Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8646418
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 37 of 43
Found at i:7466423 original size:43 final size:43
Alignment explanation
Indices: 7466362--7466471 Score: 220
Period size: 43 Copynumber: 2.6 Consensus size: 43
7466352 TGGAAACAGG
7466362 AGACAACTTTATTGTTAAAAAGATTAAAATATATATAAAAAAA
1 AGACAACTTTATTGTTAAAAAGATTAAAATATATATAAAAAAA
7466405 AGACAACTTTATTGTTAAAAAGATTAAAATATATATAAAAAAA
1 AGACAACTTTATTGTTAAAAAGATTAAAATATATATAAAAAAA
7466448 AGACAACTTTATTGTTAAAAAGAT
1 AGACAACTTTATTGTTAAAAAGAT
7466472 AAAGAAAAAA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.55, C:0.05, G:0.08, T:0.31
Consensus pattern (43 bp):
AGACAACTTTATTGTTAAAAAGATTAAAATATATATAAAAAAA
Found at i:7466466 original size:23 final size:23
Alignment explanation
Indices: 7466397--7466468 Score: 69
Period size: 23 Copynumber: 3.3 Consensus size: 23
7466387 AAAATATATA
7466397 TAAAAAAAAGACAACTTTATTGT
1 TAAAAAAAAGACAACTTTATTGT
* ** * * *
7466420 TAAAAAGATTA-AAATATA-T-A
1 TAAAAAAAAGACAACTTTATTGT
7466440 TAAAAAAAAGACAACTTTATTGT
1 TAAAAAAAAGACAACTTTATTGT
7466463 TAAAAA
1 TAAAAA
7466469 GATAAAGAAA
Statistics
Matches: 34, Mismatches: 12, Indels: 6
0.65 0.23 0.12
Matches are distributed among these distances:
20 8 0.24
21 6 0.18
22 6 0.18
23 14 0.41
ACGTcount: A:0.58, C:0.06, G:0.07, T:0.29
Consensus pattern (23 bp):
TAAAAAAAAGACAACTTTATTGT
Found at i:7466469 original size:20 final size:20
Alignment explanation
Indices: 7466401--7466470 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
7466391 TATATATAAA
7466401 AAAAAGACAACTTTATTGTT
1 AAAAAGACAACTTTATTGTT
* * * ***
7466421 AAAAAGATTAAAATATATATAAA
1 AAAAAGA--CAACTTTAT-TGTT
7466444 AAAAAGACAACTTTATTGTT
1 AAAAAGACAACTTTATTGTT
7466464 AAAAAGA
1 AAAAAGA
7466471 TAAAGAAAAA
Statistics
Matches: 35, Mismatches: 12, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
20 15 0.43
21 6 0.17
22 6 0.17
23 8 0.23
ACGTcount: A:0.57, C:0.06, G:0.09, T:0.29
Consensus pattern (20 bp):
AAAAAGACAACTTTATTGTT
Found at i:7468189 original size:160 final size:160
Alignment explanation
Indices: 7467730--7468215 Score: 864
Period size: 161 Copynumber: 3.0 Consensus size: 160
7467720 AAGGATGATC
*
7467730 AAAATACTCGAATCTAACGAATCTCGACCCGACCTTACAAAAGCAGTTTTTTTAAAATTTTAAAA
1 AAAATACTCGAATCTAACGAATCTCGACCCGACCTTACAAAAGCAGTTTTTTT-TAATTTTAAAA
*
7467795 AATCAATCCGACACAACCTGATATAAATTATTATTCTATCTATATATATATACACGTATATACCC
65 AATCAATCCGACCCAACCTGATATAAATTATTATTCTATCTATATATATATACACGTATATACCC
*
7467860 GGCTCCGTCCCACCTTGATCCCTAAAATTTT
130 GGCTCCGTCCCACCCTGATCCCTAAAATTTT
*
7467891 AAAATACTCGAATCTAACGAATCTCAACCCGACCTTACAAAAGCAGTTTTTTTTAAATTTTAAAA
1 AAAATACTCGAATCTAACGAATCTCGACCCGACCTTACAAAAGCAGTTTTTTTT-AATTTTAAAA
** *
7467956 AATCAATCAAACCCAACCTGGTATAAATTATTATTCTATCTATATATATATACACGTATATACCC
65 AATCAATCCGACCCAACCTGATATAAATTATTATTCTATCTATATATATATACACGTATATACCC
*
7468021 GACTCCGTCCCACCCTGATCCCTAAAATTTT
130 GGCTCCGTCCCACCCTGATCCCTAAAATTTT
*
7468052 AAAATACTCGAATCTAACGAATCTCGACCCGACCTTACAAAAGTAGTTTTTTTTAATTTTAAAAA
1 AAAATACTCGAATCTAACGAATCTCGACCCGACCTTACAAAAGCAGTTTTTTTTAATTTTAAAAA
7468117 ATCAATCCGACCCAACCTGATATAAATTATTATTCTATCTATATATATATACACGTATATACCCG
66 ATCAATCCGACCCAACCTGATATAAATTATTATTCTATCTATATATATATACACGTATATACCCG
*
7468182 GCTCCGTCCCACCCTGAACCCTAAAATTTT
131 GCTCCGTCCCACCCTGATCCCTAAAATTTT
7468212 AAAA
1 AAAA
7468216 AAAACTGCTT
Statistics
Matches: 309, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
160 105 0.34
161 204 0.66
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.31
Consensus pattern (160 bp):
AAAATACTCGAATCTAACGAATCTCGACCCGACCTTACAAAAGCAGTTTTTTTTAATTTTAAAAA
ATCAATCCGACCCAACCTGATATAAATTATTATTCTATCTATATATATATACACGTATATACCCG
GCTCCGTCCCACCCTGATCCCTAAAATTTT
Found at i:7468748 original size:50 final size:51
Alignment explanation
Indices: 7468626--7468752 Score: 139
Period size: 50 Copynumber: 2.5 Consensus size: 51
7468616 AGATATCCAA
* * * * *
7468626 ATATAACGCGCTGCAGGGGTCGCGCTATACCCACGTGTATGCCAGATCACC
1 ATATAACGCGGTACAGGGGGCGCGCTATACCCACGTGTACGCCAAATCACC
* * * * * * *
7468677 GTATAGCGCGGGATAGGGGGCGCGCTATACCCATGTG-GCGCCAAATCATC
1 ATATAACGCGGTACAGGGGGCGCGCTATACCCACGTGTACGCCAAATCACC
7468727 ATATAACGCGGTACAGGGGGCGCGCT
1 ATATAACGCGGTACAGGGGGCGCGCT
7468753 TTACTGCTAA
Statistics
Matches: 60, Mismatches: 16, Indels: 1
0.78 0.21 0.01
Matches are distributed among these distances:
50 31 0.52
51 29 0.48
ACGTcount: A:0.23, C:0.28, G:0.31, T:0.18
Consensus pattern (51 bp):
ATATAACGCGGTACAGGGGGCGCGCTATACCCACGTGTACGCCAAATCACC
Found at i:7468903 original size:16 final size:17
Alignment explanation
Indices: 7468876--7468911 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
7468866 TCCTTTCTTT
7468876 TATTTTTATAAAAATAA
1 TATTTTTATAAAAATAA
*
7468893 TATTTTT-TAAATATAA
1 TATTTTTATAAAAATAA
7468909 TAT
1 TAT
7468912 AAAAAATAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TATTTTTATAAAAATAA
Found at i:7482847 original size:26 final size:26
Alignment explanation
Indices: 7482804--7482858 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 26
7482794 TCTAGTTGGT
7482804 CTGGGCCGGTTCTATTTTGTTTGTAA
1 CTGGGCCGGTTCTATTTTGTTTGTAA
7482830 CTGGGCCGG-TCTAGTTTTGTTTGTAA
1 CTGGGCCGGTTCTA-TTTTGTTTGTAA
7482856 CTG
1 CTG
7482859 TTTGTAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 4 0.14
26 24 0.86
ACGTcount: A:0.11, C:0.16, G:0.29, T:0.44
Consensus pattern (26 bp):
CTGGGCCGGTTCTATTTTGTTTGTAA
Found at i:7482873 original size:3 final size:3
Alignment explanation
Indices: 7482865--7482923 Score: 66
Period size: 3 Copynumber: 19.7 Consensus size: 3
7482855 ACTGTTTGTA
* * **
7482865 AAT AAT AAT TAT AAT -AT AAT AAT ATTT AAT AAT AAT AAT AAT TTT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
7482910 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
7482924 AAACAAAAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
2 2 0.04
3 42 0.91
4 2 0.04
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
AAT
Found at i:7482898 original size:18 final size:19
Alignment explanation
Indices: 7482865--7482923 Score: 88
Period size: 18 Copynumber: 3.3 Consensus size: 19
7482855 ACTGTTTGTA
*
7482865 AATAATAATT-ATAAT-AT
1 AATAATATTTAATAATAAT
7482882 AATAATATTTAATAATAAT
1 AATAATATTTAATAATAAT
7482901 AATAAT-TTTAATAATAAT
1 AATAATATTTAATAATAAT
7482919 AATAA
1 AATAA
7482924 AAACAAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
17 9 0.23
18 22 0.56
19 8 0.21
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
AATAATATTTAATAATAAT
Found at i:7483236 original size:75 final size:76
Alignment explanation
Indices: 7483082--7483285 Score: 338
Period size: 75 Copynumber: 2.7 Consensus size: 76
7483072 GAGGTCTTAA
* *
7483082 AAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
7483147 AGGCTTTTTGG
66 AGGCTTTTTGG
*
7483158 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGG-TTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
7483222 AGGCTTTTTGG
66 AGGCTTTTTGG
* * * *
7483233 AAACATCCTGCACTGCAGGGCTTACGGATGACCCGAAGGCTTTAAAAACATCA
1 AAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCA
7483286 TGCACTGAAG
Statistics
Matches: 120, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
75 71 0.59
76 49 0.41
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (76 bp):
AAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGG
Found at i:7483290 original size:45 final size:45
Alignment explanation
Indices: 7483233--7483329 Score: 149
Period size: 45 Copynumber: 2.2 Consensus size: 45
7483223 GGCTTTTTGG
* * * *
7483233 AAACATCCTGCACTGCAGGGCTTACGGATGACCCGAAGGCTTTAA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAA
*
7483278 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAA
7483323 AAACATC
1 AAACATC
7483330 CAAAAGCTCC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.34, C:0.25, G:0.22, T:0.20
Consensus pattern (45 bp):
AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTAA
Found at i:7483306 original size:120 final size:120
Alignment explanation
Indices: 7483158--7483405 Score: 417
Period size: 121 Copynumber: 2.1 Consensus size: 120
7483148 GGCTTTTTGG
*
7483158 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGG-TTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
* * *
7483222 AGGCTTTTTGGAAACATCCTGCACTGCAGGGCTTACGGATGACCCGAAGGCTTTAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGG-TTTAA
*
7483278 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCCAAAAGCTCCCGA
1 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
* *
7483343 AGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGTTTGA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGTTTAA
7483398 AAACATCA
1 AAACATCA
7483406 AAATGCTCCC
Statistics
Matches: 120, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
120 50 0.42
121 70 0.58
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.21
Consensus pattern (120 bp):
AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGTTTAA
Found at i:7483358 original size:76 final size:76
Alignment explanation
Indices: 7483278--7483610 Score: 578
Period size: 76 Copynumber: 4.4 Consensus size: 76
7483268 AAGGCTTTAA
* *
7483278 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCCAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
7483343 AGGCTTTTTGG
66 AGGCTTTTTGG
*
7483354 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGG-TTTGAAAACATCAAAATGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
7483418 AGGCTTTTTGG
66 AGGCTTTTTGG
*
7483429 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
7483494 AGGCTTTTTGG
66 AGGCTTTTTGG
* * * *
7483505 AAACATCCTGCACTGCAGGGCTTACGGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
7483570 AGGCTTTTTGG
66 AGGCTTTTTGG
*
7483581 AAACATCATTCACTGTAGGACTTACAGATG
1 AAACATCATGCACTGTAGGACTTACAGATG
7483611 TGGGAAATAG
Statistics
Matches: 241, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
75 72 0.30
76 169 0.70
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (76 bp):
AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGG
Found at i:7483416 original size:196 final size:196
Alignment explanation
Indices: 7483078--7483481 Score: 709
Period size: 196 Copynumber: 2.1 Consensus size: 196
7483068 TCCAGAGGTC
* * *
7483078 TTAAAAACATCATGCACTGCAGGACTTACAGATGACCCTAAGGTTTTGAAAACATCAAAAAGCTC
1 TTAAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTC
7483143 CCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGTTTGAAAACAT
66 CCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGTTTGAAAACAT
* * *
7483208 CAAAAAGCTCCCGAAGGCTTTTTGGAAACATCCTGCACTGCAGGGCTTACGGATGACCCGAAGGC
131 CAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGC
7483273 T
196 T
*
7483274 TTAAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCCAAAAGCTC
1 TTAAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTC
7483339 CCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGTTTGAAAACAT
66 CCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGTTTGAAAACAT
* * *
7483404 CAAAATGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGC
131 CAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGC
7483469 T
196 T
*
7483470 TTGAAAACATCA
1 TTAAAAACATCA
7483482 AAAAGCTCCC
Statistics
Matches: 197, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
196 197 1.00
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.23
Consensus pattern (196 bp):
TTAAAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTC
CCGAAGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGTTTGAAAACAT
CAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGC
T
Found at i:7483468 original size:151 final size:152
Alignment explanation
Indices: 7483278--7483610 Score: 578
Period size: 151 Copynumber: 2.2 Consensus size: 152
7483268 AAGGCTTTAA
* *
7483278 AAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCCAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
*
7483343 AGGCTTTTTGGAAACATCATGCACTGTAGGACTTACAGATGACCCGAAGG-TTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAA
*
7483407 AATGCTCCCGAAGGCTTTTTGG
131 AAAGCTCCCGAAGGCTTTTTGG
*
7483429 AAACATCATGCACTGTAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGA
1 AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
* * *
7483494 AGGCTTTTTGGAAACATCCTGCACTGCAGGGCTTACGGATGACCCGAAGGCTTTGAAAACATCAA
66 AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAA
7483559 AAAGCTCCCGAAGGCTTTTTGG
131 AAAGCTCCCGAAGGCTTTTTGG
*
7483581 AAACATCATTCACTGTAGGACTTACAGATG
1 AAACATCATGCACTGTAGGACTTACAGATG
7483611 TGGGAAATAG
Statistics
Matches: 172, Mismatches: 9, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
151 108 0.63
152 64 0.37
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (152 bp):
AAACATCATGCACTGTAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGA
AGGCTTTTTGGAAACATCATGCACTGCAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAA
AAAGCTCCCGAAGGCTTTTTGG
Found at i:7484309 original size:22 final size:22
Alignment explanation
Indices: 7484284--7484338 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
7484274 CATAAAGCTT
*
7484284 TCATCTTTGAAAAGATAATCTA
1 TCATCTTTGAAAAGAGAATCTA
* *
7484306 TCATCTTTAAAAAGAGAATTTA
1 TCATCTTTGAAAAGAGAATCTA
7484328 TCATCTTTGAA
1 TCATCTTTGAA
7484339 GAGTGTAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:7485858 original size:77 final size:76
Alignment explanation
Indices: 7485682--7485858 Score: 196
Period size: 77 Copynumber: 2.3 Consensus size: 76
7485672 AGGATGTTGT
* * * * * * *
7485682 GGGCCTTCAGCATGCCCCAATA-TTTGCTGATATGAGCGTTCAAAATACATCAATATTCTTCATT
1 GGGCTTTCAGCATGCCCCAACATTTTGCTGATATAAACATTCAAAATACATCAACATTCCTCATT
7485746 CTGATTGAAAG
66 CTGATTGAAAG
* * ** * *
7485757 GGGCTTTCAGCATGCCCTAGCATTTTGCTGATATAAACATTCAGGATTCATCAACCATTCCTGAT
1 GGGCTTTCAGCATGCCCCAACATTTTGCTGATATAAACATTCAAAATACATCAA-CATTCCTCAT
7485822 TCTGATTGACAA-
65 TCTGATTGA-AAG
*
7485834 GGGTTTTCAGCATGCCCCAACATTT
1 GGGCTTTCAGCATGCCCCAACATTT
7485859 GTTTCTTGTT
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
75 18 0.22
76 25 0.30
77 38 0.46
78 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (76 bp):
GGGCTTTCAGCATGCCCCAACATTTTGCTGATATAAACATTCAAAATACATCAACATTCCTCATT
CTGATTGAAAG
Found at i:7487005 original size:114 final size:114
Alignment explanation
Indices: 7486805--7487024 Score: 370
Period size: 114 Copynumber: 1.9 Consensus size: 114
7486795 GATCATGCAG
* *
7486805 TTCATCTTTCAATTCCAATGATTGGTTCTGGGGTTTCTACCGAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTTCTACCAAACCAGATCAGATAACTCAAAGA
*
7486870 ACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGAGCAAA
66 ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
* * *
7486919 TTCATCTTTCAAATCCAATGATTGGTTTTGGGG-TTCATACCAAATCAGATCAGATAACTTAAAG
1 TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTTC-TACCAAACCAGATCAGATAACTCAAAG
7486983 AACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTA
65 AACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTA
7487025 CGAGAACGTG
Statistics
Matches: 99, Mismatches: 6, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
113 3 0.03
114 96 0.97
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (114 bp):
TTCATCTTTCAAATCCAATGATTGGTTCTGGGGTTTCTACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCAAA
Found at i:7487662 original size:24 final size:24
Alignment explanation
Indices: 7487635--7487683 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
7487625 AATTGATGAG
7487635 TAGATTTGTCGAATTCGACCTTGT
1 TAGATTTGTCGAATTCGACCTTGT
*
7487659 TAGATTTGTGGAATTCGACCTTGT
1 TAGATTTGTCGAATTCGACCTTGT
7487683 T
1 T
7487684 GTCAGTGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.20, C:0.14, G:0.22, T:0.43
Consensus pattern (24 bp):
TAGATTTGTCGAATTCGACCTTGT
Found at i:7495803 original size:3 final size:3
Alignment explanation
Indices: 7495795--7495859 Score: 78
Period size: 3 Copynumber: 21.7 Consensus size: 3
7495785 ACTGTTTGTA
* *
7495795 AAT AAT AAT TAT AAT -AT AAT AAT AAT ATTT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT
**
7495840 TTT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
7495860 CAAAAAATGG
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
2 2 0.04
3 48 0.92
4 2 0.04
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (3 bp):
AAT
Found at i:7500242 original size:12 final size:13
Alignment explanation
Indices: 7500212--7500246 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
7500202 ATAATAATTT
7500212 AAAAAATTTATCC
1 AAAAAATTTATCC
7500225 AAAAAATTTAT-C
1 AAAAAATTTATCC
*
7500237 ATAAAATTTA
1 AAAAAATTTA
7500247 AACTTAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (13 bp):
AAAAAATTTATCC
Found at i:7519446 original size:23 final size:23
Alignment explanation
Indices: 7519399--7519446 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
7519389 AATAACATAT
* **
7519399 TAGGTAACGCTTATATAATGTAA
1 TAGGTAACACTTATATAATAAAA
*
7519422 TAGGTAGCACTTATATAATAAAA
1 TAGGTAACACTTATATAATAAAA
7519445 TA
1 TA
7519447 AGCATTTAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (23 bp):
TAGGTAACACTTATATAATAAAA
Found at i:7523103 original size:197 final size:199
Alignment explanation
Indices: 7522658--7523490 Score: 1098
Period size: 197 Copynumber: 4.2 Consensus size: 199
7522648 AGATATTTGG
* * * *
7522658 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACAATTGTTATACATGTATCGAAACTTTGTT-
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTT-TTA
* * * * * *
7522722 GTGCACTTGGTTTTTAAATATAGTCTGGACAAAAATGTATCGAAACTTGATGTATTTGTGTCGAT
65 GTGCACTTGGTTTTGAAATACAGTCTGGA-AAAAAAGTATCGACACTTGTTATATTTGTGTCGAT
** * * * *
7522787 ACTTCATGTATATA-TGTTTTCTCATAAACCGGTACATTTAGA-CGGTTACATTGTTAATTTACC
129 ACTTTTTG-ATACACTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTGATAATTTACC
7522850 TATTACA
193 TATTACA
*
7522857 TTATAATTATAG-TTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTTA
1 TTATAATTAT-GTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTTTA
* *
7522921 GTGCACTTGGTTTTGAAATACATTATGGAAAAAAAGTATC-ACACTTGTTATATTTGTGTCGATA
65 GTGCACTTGGTTTTGAAATACAGTCTGGAAAAAAAGTATCGACACTTGTTATATTTGTGTCGATA
* **
7522985 CTTTTTGA-ACACTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACA-TGAATAATTTATTT
130 CTTTTTGATACACTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTG-ATAATTTACCT
7523048 ATTACA
194 ATTACA
* * * * *
7523054 TTATAATTATGTTTTTCGATATTTTCGGGATTGACATTTGTTTTAAATGTATTGACAC-TTTTAC
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTTTA-
* * ** * *
7523118 GTGCACTTGGTTCTGAAATACATTCTGGACCAAAAGTATCTACACTTGTTCTATTTGTGTCGATA
65 GTGCACTTGGTTTTGAAATACAGTCTGGAAAAAAAGTATCGACACTTGTTATATTTGTGTCGATA
* * * *
7523183 CTGTCT-ATACACTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCTA
130 CTTTTTGATACACTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTGATAATTTACCTA
7523247 TTACA
195 TTACA
* *
7523252 TTATAATTATGGTTTT-GATGTTTT-GGGATCGACACTTGTTATATATGTATCGACACTTTTTAG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAG
* *
7523315 TGCACTTGGTTTTGAAATACAGTCTGGAGAAAAAGTATCGACACTTGTTAGATTTGTGTCGATAC
66 TGCACTTGGTTTTGAAATACAGTCTGGAAAAAAAGTATCGACACTTGTTATATTTGTGTCGATAC
** **
7523380 TTTTTG-TACACCTGTTTTCTCAAAAATTGGTATATTTAGACCTTTTACA-TGAATAATTTACCT
131 TTTTTGATACA-CTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTG-ATAATTTACCT
7523443 ATTACA
194 ATTACA
7523449 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTT
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTT
7523491 TTATTTGTAT
Statistics
Matches: 557, Mismatches: 61, Indels: 32
0.86 0.09 0.05
Matches are distributed among these distances:
195 2 0.00
196 130 0.23
197 210 0.38
198 115 0.21
199 99 0.18
200 1 0.00
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.43
Consensus pattern (199 bp):
TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTATAAATGTATCGACACTTTTTAG
TGCACTTGGTTTTGAAATACAGTCTGGAAAAAAAGTATCGACACTTGTTATATTTGTGTCGATAC
TTTTTGATACACTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTACATTGATAATTTACCTAT
TACA
Found at i:7523429 original size:395 final size:394
Alignment explanation
Indices: 7522658--7523503 Score: 1243
Period size: 395 Copynumber: 2.1 Consensus size: 394
7522648 AGATATTTGG
* * * *
7522658 TTATAATTATGTTTTTCGATGTTTTTGGGATCGACAATTGTTATACATGTATCGAAACTTTGTTG
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACAATTGTTTTAAATGTATCGAAACTTTGTCG
* * * *
7522723 TGCACTTGGTTTTTAAATATAGTCTGGACAAAAATGTATCGAAACTTGATGTATTTGTGTCGATA
66 TGCACTTGGTTCTGAAATACAGTCTGGACAAAAATGTATCGAAACTTGATCTATTTGTGTCGATA
* * *
7522788 CTTCATGTATATATGTTTTCTCATAAACCGGTACATTTAGACGGTTACATTGTTAATTTACCTAT
131 CTTCA--TATACATGTTTTCTCAAAAACCGGTACATTTAGACGGTTACATTGCTAATTTACCTAT
7522853 TACATTATAATTATAGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTT
194 TACATTATAATTATAGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTT
* *
7522918 TTAGTGCACTTGGTTTTGAAATACATTATGGAAAAAAAGTATCACACTTGTTATATTTGTGTCGA
259 TTAGTGCACTTGGTTTTGAAATACAGTATGGAAAAAAAGTATCACACTTGTTAGATTTGTGTCGA
**
7522983 TACTTTTTGAACACTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTATTT
324 TACTTTTTGAACACTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTACCT
7523048 ATTACA
389 ATTACA
* * * * *
7523054 TTATAATTATGTTTTTCGATATTTTCGGGATTGACATTTGTTTTAAATGTATTGACACTTT-TAC
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACAATTGTTTTAAATGTATCGAAACTTTGT-C
* * * * *
7523118 GTGCACTTGGTTCTGAAATACATTCTGGACCAAAA-GTATCTACACTTGTTCTATTTGTGTCGAT
65 GTGCACTTGGTTCTGAAATACAGTCTGGACAAAAATGTATCGAAACTTGATCTATTTGTGTCGAT
* *
7523182 ACTGTC-TATACACTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCTAATTTACCT
130 ACT-TCATATACA-TGTTTTCTCAAAAACCGGTACATTTAGA-CGGTTACATTGCTAATTTACCT
* *
7523246 ATTACATTATAATTATGGTTTT-GATG-TTTTGGGATCGACACTTGTTATATATGTATCGACACT
192 ATTACATTATAATTATAGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACT
* *
7523309 TTTTAGTGCACTTGGTTTTGAAATACAGTCTGGAGAAAAAGTATCGACACTTGTTAGATTTGTGT
257 TTTTAGTGCACTTGGTTTTGAAATACAGTATGGAAAAAAAGTATC-ACACTTGTTAGATTTGTGT
* ** *
7523374 CGATACTTTTTGTACACCTGTTTTCTCAAAAATTGGTATATTTAGACCTTTTACATGAATAATTT
321 CGATACTTTTTGAACA-CTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTT
7523439 ACCTATTACA
385 ACCTATTACA
* **
7523449 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACACTTGTTTTATTTGTATCGA
1 TTATAATTATGTTTTTCGATGTTTTCGGGATCGACAATTGTTTTAAATGTATCGA
7523504 TACATTTTGT
Statistics
Matches: 403, Mismatches: 41, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
393 83 0.21
394 63 0.16
395 172 0.43
396 85 0.21
ACGTcount: A:0.28, C:0.13, G:0.16, T:0.43
Consensus pattern (394 bp):
TTATAATTATGTTTTTCGATGTTTTCGGGATCGACAATTGTTTTAAATGTATCGAAACTTTGTCG
TGCACTTGGTTCTGAAATACAGTCTGGACAAAAATGTATCGAAACTTGATCTATTTGTGTCGATA
CTTCATATACATGTTTTCTCAAAAACCGGTACATTTAGACGGTTACATTGCTAATTTACCTATTA
CATTATAATTATAGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGTATCGACACTTTTT
AGTGCACTTGGTTTTGAAATACAGTATGGAAAAAAAGTATCACACTTGTTAGATTTGTGTCGATA
CTTTTTGAACACTGTTTTCTCAAAAACCGGTATATTTAGACCGTTTACATGAATAATTTACCTAT
TACA
Found at i:7526112 original size:15 final size:15
Alignment explanation
Indices: 7526055--7526112 Score: 62
Period size: 15 Copynumber: 3.7 Consensus size: 15
7526045 GGGCGATTGT
7526055 TTGAGAAGGAGGTTGTGG
1 TTGAGAA-GAGG-TG-GG
**
7526073 TTGAGAAGAACTGGG
1 TTGAGAAGAGGTGGG
*
7526088 TTGGGAAGAGGTGGG
1 TTGAGAAGAGGTGGG
7526103 TTGAGAAGAG
1 TTGAGAAGAG
7526113 ATCTGAGAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
15 23 0.68
16 2 0.06
17 2 0.06
18 7 0.21
ACGTcount: A:0.28, C:0.02, G:0.48, T:0.22
Consensus pattern (15 bp):
TTGAGAAGAGGTGGG
Found at i:7526855 original size:169 final size:170
Alignment explanation
Indices: 7526556--7527110 Score: 628
Period size: 169 Copynumber: 3.1 Consensus size: 170
7526546 TTATAAATGT
*
7526556 ATCGACACTTTTTAGTACACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTGTTC
1 ATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACA------C
*
7526621 GATTTGTGTCGATACTTTTTGTACACCGGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATAT
60 --TTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATAT
* * *
7526686 TGTTAATTTACCTATTATATTATAATTATAGTTTTCGATGTTTTTGGG
123 TGCTAATTTACCTATTACATTATAATTATGGTTTTCGATGTTTTTGGG
*
7526734 ATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACAC-TTGTG
1 ATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTTGTG
*
7526798 TCGATACTTTTTGTACACCTGTTTTCTCAAAAATCGGTATATTTAGACCGGTTATATTGCTAATT
66 TCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCTAATT
7526863 TACCTATTACATTATAATTATGGTTTTCGATGTTTTTGGG
131 TACCTATTACATTATAATTATGGTTTTCGATGTTTTTGGG
7526903 ATCGACACTTGTTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGAC
1 ATCGACAC----------T-T-T------TT---AGTGCACTTGGTTTTGAAATACATTCTGGAC
* * * * *
7526968 CAAAAGTATTGACACTTGTTTGATTTGTGTCGGTACTTTTT-TTCACCTGTTTTCTCAAAAGCTG
45 CAAAAGTATCGACAC--------TTTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAACCG
* * *
7527032 CTATATTTAGACCGATTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGAAGTTTT
102 GTATATTTAGACCGGTTATATTGCTAATTTACCTATTACATTATAATTATGGTTTTCGATGTTTT
7527097 TGGG
167 TGGG
7527101 ATCGACACTT
1 ATCGACACTT
7527111 GTTATAAATG
Statistics
Matches: 330, Mismatches: 17, Indels: 51
0.83 0.04 0.13
Matches are distributed among these distances:
169 113 0.34
172 1 0.00
178 56 0.17
179 1 0.00
180 1 0.00
181 1 0.00
187 3 0.01
188 1 0.00
190 44 0.13
198 93 0.28
199 16 0.05
ACGTcount: A:0.26, C:0.15, G:0.16, T:0.42
Consensus pattern (170 bp):
ATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATCGACACTTTGTG
TCGATACTTTTTGTACACCTGTTTTCTCAAAAACCGGTATATTTAGACCGGTTATATTGCTAATT
TACCTATTACATTATAATTATGGTTTTCGATGTTTTTGGG
Found at i:7527077 original size:198 final size:190
Alignment explanation
Indices: 7526734--7527129 Score: 616
Period size: 198 Copynumber: 2.0 Consensus size: 190
7526724 TGTTTTTGGG
7526734 ATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTGT
1 ATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTGT
* *
7526799 CGATACTTTTTGTACACCTGTTTTCTCAAAAATCGGTATATTTAGACCGGTTATATTGCTAATTT
66 CGATACTTTTTGTACACCTGTTTTCTCAAAAATCGCTATATTTAGACCGATTATATTGCTAATTT
*
7526864 ACCTATTACATTATAATTATGGTTTTCGATGTTTTTGGGATCGACACTTGTTATAAATGT
131 ACCTATTACATTATAATTATGGTTTTCGAAGTTTTTGGGATCGACACTTGTTATAAATGT
* *
7526924 ATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACCAAAAGTATTGACACTTGTTT
1 ATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACAC------
* * *
7526989 GATTTGTGTCGGTACTTTTT-TTCACCTGTTTTCTC-AAAAGCTGCTATATTTAGACCGATTATA
60 ---TTGTGTCGATACTTTTTGTACACCTGTTTTCTCAAAAATC-GCTATATTTAGACCGATTATA
7527052 TTGCTAATTTACCTATTACATTATAATTATGGTTTTCGAAGTTTTTGGGATCGACACTTGTTATA
121 TTGCTAATTTACCTATTACATTATAATTATGGTTTTCGAAGTTTTTGGGATCGACACTTGTTATA
7527117 AATGT
186 AATGT
7527122 ATCGACAC
1 ATCGACAC
7527130 ATAAGTTTAC
Statistics
Matches: 188, Mismatches: 8, Indels: 12
0.90 0.04 0.06
Matches are distributed among these distances:
190 57 0.30
197 5 0.03
198 110 0.59
199 16 0.09
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (190 bp):
ATCGACACTTTTTAGTGCACTTGGTTTTGAAATACATTCTGGACAAAAAGTATCGACACTTGTGT
CGATACTTTTTGTACACCTGTTTTCTCAAAAATCGCTATATTTAGACCGATTATATTGCTAATTT
ACCTATTACATTATAATTATGGTTTTCGAAGTTTTTGGGATCGACACTTGTTATAAATGT
Found at i:7527383 original size:18 final size:19
Alignment explanation
Indices: 7527336--7527384 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
7527326 TTACATTCAG
*
7527336 ATACAAAATTATAAATTGT
1 ATACAAAATTAAAAATTGT
7527355 ATACAAAATTAAAAATCT-T
1 ATACAAAATTAAAAAT-TGT
7527374 ATAC-AAATTAA
1 ATACAAAATTAA
7527385 CCATGCATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 7 0.25
19 20 0.71
20 1 0.04
ACGTcount: A:0.57, C:0.08, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTAAAAATTGT
Found at i:7528873 original size:18 final size:18
Alignment explanation
Indices: 7528837--7528875 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
7528827 TTCTCCTCAT
* *
7528837 TTCCTCCATCTTTTTTTC
1 TTCCTCCATCTTCTCTTC
7528855 TTCCTCCATCTTCTCTTC
1 TTCCTCCATCTTCTCTTC
7528873 TTC
1 TTC
7528876 AAATTTTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.05, C:0.38, G:0.00, T:0.56
Consensus pattern (18 bp):
TTCCTCCATCTTCTCTTC
Found at i:7529542 original size:19 final size:19
Alignment explanation
Indices: 7529514--7529577 Score: 65
Period size: 24 Copynumber: 3.1 Consensus size: 19
7529504 GCAACCTGCA
7529514 TTTATAATAAAAGTTATCAT
1 TTTAT-ATAAAAGTTATCAT
*
7529534 TTTATATAATAACTATATTATCAT
1 TTTATAT-A-AA--A-GTTATCAT
7529558 TTTATATAAAAGTTATCAT
1 TTTATATAAAAGTTATCAT
7529577 T
1 T
7529578 CTTCAACTCA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
19 10 0.27
20 7 0.19
21 2 0.05
22 2 0.05
23 2 0.05
24 14 0.38
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.48
Consensus pattern (19 bp):
TTTATATAAAAGTTATCAT
Found at i:7529544 original size:22 final size:21
Alignment explanation
Indices: 7529514--7529577 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 21
7529504 GCAACCTGCA
7529514 TTTATAATAAAAGTTATCATT
1 TTTATAATAAAAGTTATCATT
7529535 TTATATAATAACTATA-TTATCA-T
1 TT-TATAATAA--A-AGTTATCATT
7529558 TTTAT-ATAAAAGTTATCATT
1 TTTATAATAAAAGTTATCATT
7529578 CTTCAACTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 13
0.74 0.00 0.26
Matches are distributed among these distances:
18 1 0.03
19 7 0.19
20 1 0.03
21 6 0.16
22 11 0.30
23 3 0.08
24 7 0.19
25 1 0.03
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.48
Consensus pattern (21 bp):
TTTATAATAAAAGTTATCATT
Found at i:7530546 original size:18 final size:18
Alignment explanation
Indices: 7530523--7530561 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7530513 TACTGTCAAT
7530523 ATTTAAAATTTGTAAT-CA
1 ATTTAAAATTT-TAATCCA
*
7530541 ATTTAAAGTTTTAATCCA
1 ATTTAAAATTTTAATCCA
7530559 ATT
1 ATT
7530562 ACCATTTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (18 bp):
ATTTAAAATTTTAATCCA
Found at i:7530859 original size:19 final size:20
Alignment explanation
Indices: 7530812--7530860 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
7530802 CATTTATACA
7530812 ACCTA-AAATATCATTTTCT
1 ACCTATAAATATCATTTTCT
7530831 ACCTAT-AATATCATTTT-T
1 ACCTATAAATATCATTTTCT
7530849 ACCTATAAATAT
1 ACCTATAAATAT
7530861 TAACTAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.25
19 21 0.75
ACGTcount: A:0.39, C:0.18, G:0.00, T:0.43
Consensus pattern (20 bp):
ACCTATAAATATCATTTTCT
Found at i:7531450 original size:182 final size:181
Alignment explanation
Indices: 7531243--7532342 Score: 1107
Period size: 182 Copynumber: 6.2 Consensus size: 181
7531233 TACGCGTACT
* * *
7531243 TATTAAAGTATCGACACTCTCAACATATATGGTATCTATTTATCGGTTTTGTCA-TTTTGAGACC
1 TATTAAATTATCGACACTTTCAACATATATGGTAACT-TTT-TCGGTTTTGTCATTTTTGAGACC
* * *
7531307 GGTTTTATCATATTTTTACCTGTTATATTGTTCTGGATCGATACATTTTCATAAAGTGTCGACAC
64 AGTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTAATAAAGTGTCGACAC
* * *
7531372 TTTTTAAGTGTTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
129 TTTTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTAA
** *
7531425 TATTAAATTATCGACACTTTCAACATATCCGGTAACTTTTTCCGGTTTTGTCATTTTTGAGACCT
1 TATTAAATTATCGACACTTTCAACATATATGGTAACTTTTT-CGGTTTTGTCATTTTTGAGACCA
* *
7531490 GTTTTATCATATTTTTACCTGTTATATTGGTAAGGATCGATACATTTTAATAAAGTGTCGACACT
65 GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTAATAAAGTGTCGACACT
7531555 TTTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTAA
130 TTTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTAA
* *
7531607 TATTAAATTATCAACACTTTC-A-ATATATCGATAACTTTTTCTGGTTTTGTCATTTTTGAGACC
1 TATTAAATTATCGACACTTTCAACATATAT-GGTAACTTTTTC-GGTTTTGTCATTTTTGAGACC
* * *
7531670 AATTTTATCATATTTTTACATGTTATATTGTTATGGATCGATACATTTTTAT-AAGTGTCGACAC
64 AGTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTAATAAAGTGTCGACAC
* * ***** * * * * * * *
7531734 TTTTT-A--G-TTTAATTTCAGAAAGTGTTGATACTTATATTAAATTATCGACACT--
129 TTTTTAAGCGCTATAACTTC-TTCTCT-TTTA-AATT-CA-GAAAGTGTCGATACTAA
* * * ****
7531786 T-TCAACA-TATCCGATATCGTTT-GAC-----TGG----TTTTCAATTTTTG--------G-GA
1 TATTAA-ATTAT-CGACA-C-TTTCAACATATATGGTAACTTTTTCGGTTTTGTCATTTTTGAGA
* * * ** ** *
7531830 CCTGTTTTATTATATTTTTACCTGTTATATTGTTGTGGATCGATATTTTTTTTTAAAGTATCGAC
62 CCAGTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTAATAAAGTGTCGAC
* * * * *
7531895 ACTTTATAGGCACTATAACTTCTTCTCTTTTAAATTCAGAAAGTTTCGATACTTA
127 ACTTTTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTAA
* *** * * *
7531950 TATTAAATTATCGACACTTTCAATATATCCAGTAGCGTTTTATTGGTTTTGTCAATTTTGAGA-C
1 TATTAAATTATCGACACTTTCAACATATATGGTAAC-TTTT-TCGGTTTTGTCATTTTTGAGACC
*
7532014 ATGTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTCATAAAGTGTCGACA
64 A-GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTAATAAAGTGTCGACA
* * *
7532079 CTTTTTAACCG-TAATAACTTTTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
128 CTTTTTAAGCGCT-ATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTAA
* **
7532133 TATTAAATTATCGACACTTTTAACATATCCGGTAACTTTTCTCGGTTTTGTCATTTTTGAGA-CA
1 TATTAAATTATCGACACTTTCAACATATATGGTAACTTTT-TCGGTTTTGTCATTTTTGAGACCA
* * * * *
7532197 TGTTTTATCATATTTTTACCTGTTACATTGGTAAGGATCGATTCATTTTCATAAAGTGTCGACAC
65 -GTTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTAATAAAGTGTCGACAC
*
7532262 TTTTTAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTAA
129 TTTTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTAA
* *
7532315 TATTAAATTATCGGCACTTTCAATATAT
1 TATTAAATTATCGACACTTTCAACATAT
7532343 CCAGTAACTT
Statistics
Matches: 757, Mismatches: 113, Indels: 96
0.78 0.12 0.10
Matches are distributed among these distances:
162 62 0.08
163 19 0.03
164 9 0.01
165 9 0.01
166 1 0.00
167 7 0.01
168 1 0.00
171 5 0.01
172 4 0.01
173 4 0.01
174 5 0.01
176 8 0.01
177 3 0.00
178 9 0.01
179 9 0.01
180 25 0.03
181 107 0.14
182 333 0.44
183 137 0.18
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (181 bp):
TATTAAATTATCGACACTTTCAACATATATGGTAACTTTTTCGGTTTTGTCATTTTTGAGACCAG
TTTTATCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTAATAAAGTGTCGACACTT
TTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTAA
Found at i:7531773 original size:161 final size:163
Alignment explanation
Indices: 7531580--7531899 Score: 432
Period size: 162 Copynumber: 2.0 Consensus size: 163
7531570 CTTCTTCTCT
*
7531580 TTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCAACACTTTCAATATAT-CGATAAC-T
1 TTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCAACACTTTCAACATATCCGATAACGT
**
7531643 TTTTCTGGTTTTGTC-ATTTTTGAGACCAATTTTATCATATTTTTACATGTTATATTGTTATGGA
66 TTGACTGG-TTT-TCAATTTTTGAGACCAATTTTATCATATTTTTACATGTTATATTGTTATGGA
*
7531707 TCGATACATTTTTAT-AAGTGTCGACACTTTTTAG
129 TCGATACATTTTTATAAAGTATCGACACTTTTTAG
* * * * *
7531741 TTTAATTTCAGAAAGTGTTGATACTTATATTAAATTATCGACACTTTCAACATATCCGATATCGT
1 TTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCAACACTTTCAACATATCCGATAACGT
* ** * * *
7531806 TTGACTGGTTTTCAATTTTTGGGACCTGTTTTATTATATTTTTACCTGTTATATTGTTGTGGATC
66 TTGACTGGTTTTCAATTTTTGAGACCAATTTTATCATATTTTTACATGTTATATTGTTATGGATC
** *
7531871 GATATTTTTTTTTAAAGTATCGACACTTT
131 GATACATTTTTATAAAGTATCGACACTTT
7531900 ATAGGCACTA
Statistics
Matches: 137, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
161 52 0.38
162 64 0.47
163 21 0.15
ACGTcount: A:0.28, C:0.12, G:0.13, T:0.47
Consensus pattern (163 bp):
TTTAAATTCAGAAAGTGTCGATACTAATATTAAATTATCAACACTTTCAACATATCCGATAACGT
TTGACTGGTTTTCAATTTTTGAGACCAATTTTATCATATTTTTACATGTTATATTGTTATGGATC
GATACATTTTTATAAAGTATCGACACTTTTTAG
Found at i:7532374 original size:13 final size:14
Alignment explanation
Indices: 7532346--7532376 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7532336 AATATATCCA
7532346 GTAACTTTTTTCCG
1 GTAACTTTTTTCCG
7532360 GTAACTTTTTT-CG
1 GTAACTTTTTTCCG
7532373 GTAA
1 GTAA
7532377 GGAGCGATCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.48
Consensus pattern (14 bp):
GTAACTTTTTTCCG
Found at i:7533398 original size:263 final size:261
Alignment explanation
Indices: 7532922--7533866 Score: 1191
Period size: 263 Copynumber: 3.6 Consensus size: 261
7532912 TTAAAATCAC
* *
7532922 GTTGCAATCTGAAATATTATCATTTTAAAAATTAAAAGTGATTACGCCTAAAATATTATGAAATT
1 GTTGCAATCTGAAATATTATCATTTTAAAAAATAAAAGTGATTACGCCTAAAATATTATGAAAGT
** ** * *
7532987 TTTAGTCGACAAAGTCTTGGTGTTCCTCACGACAATCAAATAGGTTAAGAGCACAAAGTATTACG
66 TTTAACCGATGAAGCCTTGGCGTTCCTCACGACAATCAAATAGGTTAAGAGCACAAAGTATTACG
** * * *
7533052 ATTATG-CAAAATAGAAATGGTTGCGCCCCAGAATATTACGGTTCTAGAGAAAATAGGTTGCGAC
131 ATTA-GACAAAATAGAAACAGTTGCGCCCCAAAATATCACGGTTCTAAAG-AAATAGGTTGCGAC
* * *
7533116 TTATAATGACAACTTGTGTATTAATAGAATAGATTGCACCCATAGTGTCATGACTCCTAAAGAAA
194 TTATAATGTCAACTTGTGTATTAATAGAATAGATTGCGCCCAGAGTGTCATGACTCC-AAAGAAA
7533181 GCAT
258 GCAT
* *
7533185 GTTGCAATCTTG-AATATTATCATTTTAAAAAATAAAAGTGATTGCGCTTAAAATATTATGAAAG
1 GTTGCAATC-TGAAATATTATCATTTTAAAAAATAAAAGTGATTACGCCTAAAATATTATGAAAG
* * * * *
7533249 TTTTAATCGATGGAGCCTTGGCGTTACTCATGACAATCAAATAGGTTAAGAGCACAAAATATTAC
65 TTTTAACCGATGAAGCCTTGGCGTTCCTCACGACAATCAAATAGGTTAAGAGCACAAAGTATTAC
* * * *
7533314 GATTAGACAAAATAAAAATAGTTGCGCCCCAAAATATCATGGTTTTAATAGAAATAGGTTGCGAC
130 GATTAGACAAAATAGAAACAGTTGCGCCCCAAAATATCACGGTTCTAA-AGAAATAGGTTGCGAC
* * * *
7533379 TTATAATGTCAAGTTGTGTATTAATATAATAGATTGCGCCCAGAGTGTCATGACCCCCAAATAAA
194 TTATAATGTCAACTTGTGTATTAATAGAATAGATTGCGCCCAGAGTGTCATGA-CTCCAAAGAAA
7533444 GCAT
258 GCAT
* * ** * *
7533448 ATTGCAATCTGGAATATTATCATTTT-AAAAATAAAAGCAATTAAGCCTAAAGTATTATGAAAGT
1 GTTGCAATCTGAAATATTATCATTTTAAAAAATAAAAGTGATTACGCCTAAAATATTATGAAAGT
* * * * *
7533512 TTTAACCGATGAAGTCTTGACATTCCTCGCGATAATCAAATAGGTTAAGAGCACAAAGTATTACG
66 TTTAACCGATGAAGCCTTGGCGTTCCTCACGACAATCAAATAGGTTAAGAGCACAAAGTATTACG
* * * * *
7533577 ATTAAGA-AAAATAGGAACAGTTGCG-CCCAAAATATCACAGCTCTAAAGGAAATAGATCGCGAC
131 ATT-AGACAAAATAGAAACAGTTGCGCCCCAAAATATCACGGTTCTAAA-GAAATAGGTTGCGAC
* * *
7533640 TTGTAATGTCAACTTGTGTATTAATAGAATAGATTACGCCCAGAGTGTCATGGTCTCCAAAGAAA
194 TTATAATGTCAACTTGTGTATTAATAGAATAGATTGCGCCCAGAGTGTCAT-GACTCCAAAGAAA
*
7533705 GCAC
258 GCAT
* * * * *
7533709 GTTACAATCTGAAATATTATCATTTTAAAAAATAAAAGTGATTGCACCTAAAGTATTAAGAAAGT
1 GTTGCAATCTGAAATATTATCATTTTAAAAAATAAAAGTGATTACGCCTAAAATATTATGAAAGT
* * * * * *
7533774 TTTAGCCGATGAAGCATTGGTGTTCCCCGCGACAATCAAATAGGTTAAGAGCACAAAGTATTGCG
66 TTTAACCGATGAAGCCTTGGCGTTCCTCACGACAATCAAATAGGTTAAGAGCACAAAGTATTACG
*
7533839 ATTA-ATCAAAATAGAAACGGTTGCGCCC
131 ATTAGA-CAAAATAGAAACAGTTGCGCCC
7533867 ATAATATATG
Statistics
Matches: 589, Mismatches: 81, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
260 2 0.00
261 113 0.19
262 216 0.37
263 251 0.43
264 7 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.29
Consensus pattern (261 bp):
GTTGCAATCTGAAATATTATCATTTTAAAAAATAAAAGTGATTACGCCTAAAATATTATGAAAGT
TTTAACCGATGAAGCCTTGGCGTTCCTCACGACAATCAAATAGGTTAAGAGCACAAAGTATTACG
ATTAGACAAAATAGAAACAGTTGCGCCCCAAAATATCACGGTTCTAAAGAAATAGGTTGCGACTT
ATAATGTCAACTTGTGTATTAATAGAATAGATTGCGCCCAGAGTGTCATGACTCCAAAGAAAGCA
T
Found at i:7535012 original size:27 final size:28
Alignment explanation
Indices: 7534970--7535032 Score: 110
Period size: 27 Copynumber: 2.3 Consensus size: 28
7534960 ATTTAAAACA
*
7534970 TTTAAAAAATAAATCAAATTAAAATCTT
1 TTTAATAAATAAATCAAATTAAAATCTT
7534998 TTTAATAAA-AAATCAAATTAAAATCTT
1 TTTAATAAATAAATCAAATTAAAATCTT
7535025 TTTAATAA
1 TTTAATAA
7535033 TGTGACTAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 26 0.76
28 8 0.24
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (28 bp):
TTTAATAAATAAATCAAATTAAAATCTT
Found at i:7539355 original size:18 final size:21
Alignment explanation
Indices: 7539332--7539373 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7539322 GACGCCATCT
7539332 AAAATATT-T-AA-AAATAAA
1 AAAATATTATAAACAAATAAA
7539350 AAAATATTATAAACAAATAAA
1 AAAATATTATAAACAAATAAA
7539371 AAA
1 AAA
7539374 TAAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 1 0.05
20 2 0.10
21 10 0.48
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAATATTATAAACAAATAAA
Found at i:7540802 original size:13 final size:13
Alignment explanation
Indices: 7540764--7540794 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
7540754 TTTATATTTA
7540764 ATTATATAGTTTT
1 ATTATATAGTTTT
7540777 ATTATATAGTTTT
1 ATTATATAGTTTT
7540790 ATTAT
1 ATTAT
7540795 TTATTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.61
Consensus pattern (13 bp):
ATTATATAGTTTT
Found at i:7540914 original size:23 final size:22
Alignment explanation
Indices: 7540825--7540916 Score: 71
Period size: 23 Copynumber: 3.9 Consensus size: 22
7540815 TACCATTCGG
*
7540825 TATTTTAATATATATACATGTTTA
1 TATTTTATTATATATAC-T-TTTA
7540849 TATTCTATATTACTACTATA-TTTTA
1 TATT-T-TATTA-TA-TATACTTTTA
* *
7540874 T-TATTATCTATATGTACTTTTAA
1 TATTTTAT-TATATATACTTTT-A
7540897 TATTTTATTATATATACTTT
1 TATTTTATTATATATACTTT
7540917 AGTTATTTGT
Statistics
Matches: 55, Mismatches: 5, Indels: 17
0.71 0.06 0.22
Matches are distributed among these distances:
21 3 0.05
22 9 0.16
23 16 0.29
24 10 0.18
25 6 0.11
26 5 0.09
27 2 0.04
28 4 0.07
ACGTcount: A:0.33, C:0.08, G:0.02, T:0.58
Consensus pattern (22 bp):
TATTTTATTATATATACTTTTA
Found at i:7540923 original size:23 final size:24
Alignment explanation
Indices: 7540871--7540924 Score: 58
Period size: 23 Copynumber: 2.2 Consensus size: 24
7540861 CTACTATATT
*
7540871 TTATTATTATCTATATGTACTTTTA
1 TTATT-TTATCTATATATACTTTTA
*
7540896 ATATTTTAT-TATATATAC-TTTA
1 TTATTTTATCTATATATACTTTTA
7540918 GTTATTT
1 -TTATTT
7540925 GTCACTTGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
22 4 0.16
23 13 0.52
24 4 0.16
25 4 0.16
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.61
Consensus pattern (24 bp):
TTATTTTATCTATATATACTTTTA
Found at i:7546935 original size:37 final size:37
Alignment explanation
Indices: 7546851--7546939 Score: 97
Period size: 37 Copynumber: 2.4 Consensus size: 37
7546841 ATTGAAAACA
* ** * * *
7546851 TTTCCCTTGAAATGAATTTTTTTTCTCTCTTGAGATAG
1 TTTCCCTTGAAA-CAAAATTTTGTCTCCCTTGAGACAG
*
7546889 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAT
1 TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
*
7546926 TTTCTCTTGAAACA
1 TTTCCCTTGAAACA
7546940 TAAACATTGA
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 31 0.72
38 12 0.28
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.44
Consensus pattern (37 bp):
TTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAG
Found at i:7547002 original size:36 final size:36
Alignment explanation
Indices: 7546955--7547036 Score: 119
Period size: 36 Copynumber: 2.3 Consensus size: 36
7546945 ATTGAAAACA
** * *
7546955 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAG
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
7546991 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
1 TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
*
7547027 TTTCTCTTGA
1 TTTCCCTTGA
7547037 GACATAAACT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.22, C:0.21, G:0.15, T:0.43
Consensus pattern (36 bp):
TTTCCCTTGAAACAAATTTTGTCTCCCTTGAGACAG
Found at i:7547064 original size:102 final size:103
Alignment explanation
Indices: 7546777--7547068 Score: 473
Period size: 104 Copynumber: 2.8 Consensus size: 103
7546767 ATCTTGCTTA
*
7546777 AGATAGTTTCCCTCGAAACAGAAAATTTCT-TCTCCCTTGAGACAGTTTCTCTTGAAACATAAAC
1 AGATAGTTTCCCTTGAAAC--AAAATTT-TGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAAC
*
7546841 ATTGAAAACATTTCCCTTGAAATGAATTTTTTTTCTCTCTTG
63 ATTGAAAACATTTCCCTTGAAATGAA-TTTTTGTCTCTCTTG
*
7546883 AGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACATTTTCTCTTGAAACATAAACATT
1 AGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATT
7546948 GAAAACATTTCCCTTGAAATGAA-TTTTGTCTCTCTTG
66 GAAAACATTTCCCTTGAAATGAATTTTTGTCTCTCTTG
* *
7546985 AGATAGTTTCCCTTGAAAC-AAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAGACATAAACTTT
1 AGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATT
7547049 GAAAACAATTTCCCTTGAAA
66 GAAAAC-ATTTCCCTTGAAA
7547069 CAAAATCTTT
Statistics
Matches: 178, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
101 48 0.27
102 45 0.25
103 1 0.01
104 66 0.37
106 18 0.10
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (103 bp):
AGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATT
GAAAACATTTCCCTTGAAATGAATTTTTGTCTCTCTTG
Found at i:7547201 original size:91 final size:91
Alignment explanation
Indices: 7547070--7547244 Score: 266
Period size: 91 Copynumber: 1.9 Consensus size: 91
7547060 CCCTTGAAAC
7547070 AAAATCTTTGAATATGTTTTACATTAAACTAATTTCGTCTCCCTTGAGACAGTTTCTTTTAG-AA
1 AAAATCTTTGAATATGTTTTACATTAAACTAATTTCGTCTCCCTTGAGACAGTTTCTTTTAGAAA
*
7547134 CAAAGTTTTGTCTCTCTTGAAACAAAA
66 CAAA-TTTTGTCTCCCTTGAAACAAAA
* * *
7547161 AAAATCTTTGAATATGTTTT-CCTTAAAAC-AAGTTTTGTCTCCCTTGAGACAGTTTCTTTTGGA
1 AAAATCTTTGAATATGTTTTACATT-AAACTAA-TTTCGTCTCCCTTGAGACAGTTTCTTTTAGA
7547224 AACAAATTTTGTCTCCCTTGA
64 AACAAATTTTGTCTCCCTTGA
7547245 GACAGTTTCT
Statistics
Matches: 77, Mismatches: 4, Indels: 6
0.89 0.05 0.07
Matches are distributed among these distances:
90 5 0.06
91 66 0.86
92 6 0.08
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (91 bp):
AAAATCTTTGAATATGTTTTACATTAAACTAATTTCGTCTCCCTTGAGACAGTTTCTTTTAGAAA
CAAATTTTGTCTCCCTTGAAACAAAA
Found at i:7547721 original size:107 final size:106
Alignment explanation
Indices: 7547321--7547843 Score: 735
Period size: 106 Copynumber: 4.9 Consensus size: 106
7547311 TAGTTCGAAG
* * * * *
7547321 CGAGACAACGCAAGTTGAACTTCACGACGAAGGGACCACTGGTTGTCAACAAACAACTTCTCAAT
1 CGAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAAT
*
7547386 TTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGGCT
66 TTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACT
* ** * * *
7547427 TGAGGTAACACAAGTTTAACTTCACGATGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAGT
1 CGAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAAT
* *
7547492 TTTAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGGCT
66 TTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACT
* * * * *
7547533 CGAGGCAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAATAATTTCCCAGT
1 CGAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAAT
* * *
7547598 TTTAGAGCCAATTTCAACTTCACAGCGAAAGATCTTGGACT
66 TTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACT
* * *
7547639 CGAGACAACACAAGTTCAAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAATAATTTCCCAA
1 CGAGACAACACAAGTTC-AACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAA
7547704 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACT
65 TTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACT
* * * *
7547746 CGAGACAGCACAAGTTC-ACTTCACGACGAAGGGACCACTGGTTGTCAATATACAATTTCCC-AT
1 CGAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAAT
* *
7547809 TTCCAGAACCAATTTCAACTTCATAGCGAAGGATA
66 TT-CAGAGCCAATTTCAACTTCACAGCGAAGGATA
7547844 GACTCGATAG
Statistics
Matches: 380, Mismatches: 35, Indels: 5
0.90 0.08 0.01
Matches are distributed among these distances:
104 4 0.01
105 68 0.18
106 207 0.54
107 101 0.27
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.24
Consensus pattern (106 bp):
CGAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCCAAT
TTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACT
Found at i:7549526 original size:28 final size:30
Alignment explanation
Indices: 7549501--7549555 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
7549491 ATGTTTATAT
7549501 TCTATAT-TACTACT-ATATTTTATTATTA
1 TCTATATGTACTACTAATATTTTATTATTA
**
7549529 TCTATATGTACTTTTAATATTTTATTA
1 TCTATATGTACTACTAATATTTTATTA
7549556 CTATATACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 7 0.30
29 5 0.22
30 11 0.48
ACGTcount: A:0.31, C:0.09, G:0.02, T:0.58
Consensus pattern (30 bp):
TCTATATGTACTACTAATATTTTATTATTA
Found at i:7555523 original size:17 final size:17
Alignment explanation
Indices: 7555501--7555539 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
7555491 TTTTCTTTCA
7555501 ATTAAAGATCAGTTTTG
1 ATTAAAGATCAGTTTTG
7555518 ATTAAAGATCAGTTTTG
1 ATTAAAGATCAGTTTTG
7555535 ATTAA
1 ATTAA
7555540 TAGAGCAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.41
Consensus pattern (17 bp):
ATTAAAGATCAGTTTTG
Found at i:7557176 original size:13 final size:13
Alignment explanation
Indices: 7557158--7557204 Score: 51
Period size: 13 Copynumber: 3.7 Consensus size: 13
7557148 TATAGTCAGG
7557158 TGAAATTATTATA
1 TGAAATTATTATA
*
7557171 TGAAATTAGTATA
1 TGAAATTATTATA
** *
7557184 TGGTATTACTATA
1 TGAAATTATTATA
7557197 T-AAATTAT
1 TGAAATTAT
7557205 ATGAAAGAGT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
12 4 0.15
13 23 0.85
ACGTcount: A:0.43, C:0.02, G:0.11, T:0.45
Consensus pattern (13 bp):
TGAAATTATTATA
Found at i:7558804 original size:23 final size:23
Alignment explanation
Indices: 7558771--7558814 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7558761 GAGTCGAGGG
7558771 TCTACGCGGTCCTTCGGGACAAT
1 TCTACGCGGTCCTTCGGGACAAT
* *
7558794 TCTACGTGGTCTTTCGGGACA
1 TCTACGCGGTCCTTCGGGACA
7558815 TATATGTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.16, C:0.27, G:0.27, T:0.30
Consensus pattern (23 bp):
TCTACGCGGTCCTTCGGGACAAT
Found at i:7558989 original size:47 final size:47
Alignment explanation
Indices: 7558895--7558989 Score: 111
Period size: 47 Copynumber: 2.0 Consensus size: 47
7558885 TTCTTAAGGA
* ** * * *
7558895 ATTTCTATGTGGTCCTTTTGGACAAATCTTATATGTCACTACGGTGC
1 ATTTCTATGCGGTCCTTCGGGACAAATCTTACATGACACTACAGTGC
*
7558942 ATTTCTATGCGGTCCTTCGGGACAAAT-TCTACATGACACTTCAGTGC
1 ATTTCTATGCGGTCCTTCGGGACAAATCT-TACATGACACTACAGTGC
7558989 A
1 A
7558990 AATTTATACC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
46 1 0.03
47 39 0.98
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.36
Consensus pattern (47 bp):
ATTTCTATGCGGTCCTTCGGGACAAATCTTACATGACACTACAGTGC
Found at i:7559106 original size:2 final size:2
Alignment explanation
Indices: 7559099--7559160 Score: 124
Period size: 2 Copynumber: 31.0 Consensus size: 2
7559089 ATCAAATACA
7559099 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7559141 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
7559161 GATTATATGT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 60 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7559806 original size:21 final size:21
Alignment explanation
Indices: 7559776--7559816 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7559766 GTAACAGTAA
7559776 TGTAGAAGGGTATCGATACCT
1 TGTAGAAGGGTATCGATACCT
* *
7559797 TGTAGCAGGGTATCGGTACC
1 TGTAGAAGGGTATCGATACC
7559817 CCTCTAGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.27
Consensus pattern (21 bp):
TGTAGAAGGGTATCGATACCT
Found at i:7571023 original size:22 final size:21
Alignment explanation
Indices: 7570981--7571020 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7570971 GAGTTTATTT
*
7570981 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
7571002 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
7571021 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:7573995 original size:17 final size:15
Alignment explanation
Indices: 7573962--7573992 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7573952 CATGAAAATG
7573962 TGTATAGGTGTCATA
1 TGTATAGGTGTCATA
7573977 TGTATAGGTGTCATA
1 TGTATAGGTGTCATA
7573992 T
1 T
7573993 ATGAAAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.26, T:0.42
Consensus pattern (15 bp):
TGTATAGGTGTCATA
Found at i:7575869 original size:17 final size:16
Alignment explanation
Indices: 7575847--7575903 Score: 62
Period size: 17 Copynumber: 3.5 Consensus size: 16
7575837 CCGTGTCCCG
7575847 ACCCGGATGTTCCGGGT
1 ACCCGGATGTT-CGGGT
*
7575864 ACCCGGATTTTACGGGT
1 ACCCGGATGTT-CGGGT
* *
7575881 ACCCGTATG-TCAGGT
1 ACCCGGATGTTCGGGT
7575896 ACCCGGAT
1 ACCCGGAT
7575904 ACCCGGTTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
15 11 0.32
16 1 0.03
17 22 0.65
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.25
Consensus pattern (16 bp):
ACCCGGATGTTCGGGT
Found at i:7581206 original size:2 final size:2
Alignment explanation
Indices: 7581199--7581230 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7581189 ATTTATTTTA
7581199 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7581231 TTAATAGTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7581579 original size:31 final size:32
Alignment explanation
Indices: 7581543--7581616 Score: 98
Period size: 31 Copynumber: 2.3 Consensus size: 32
7581533 CTTATTTTTG
7581543 AAATATTTAATGATG-TATTTAT-GTTTTGATA
1 AAATATTTAAT-ATGTTATTTATAGTTTTGATA
* *
7581574 AAATATTTGATATGTTATTTATATTTTTGATA
1 AAATATTTAATATGTTATTTATAGTTTTGATA
*
7581606 AAATAGTTAAT
1 AAATATTTAAT
7581617 TTGATATATA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
30 3 0.08
31 17 0.46
32 17 0.46
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (32 bp):
AAATATTTAATATGTTATTTATAGTTTTGATA
Found at i:7595106 original size:39 final size:41
Alignment explanation
Indices: 7595061--7595138 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 41
7595051 TAAGGACACA
* * *
7595061 TATATGTTCC-AGATGATCAAATAT-GTCTCGAAGGACCGC
1 TATATGTTCCAAAAGGATCAAATATAGTCCCGAAGGACCGC
*
7595100 TATATGTTCCAAAAGGATCACATATAGTCCCGAAGGACC
1 TATATGTTCCAAAAGGATCAAATATAGTCCCGAAGGACC
7595139 ACATAGAACC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 10 0.30
40 11 0.33
41 12 0.36
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (41 bp):
TATATGTTCCAAAAGGATCAAATATAGTCCCGAAGGACCGC
Found at i:7595204 original size:53 final size:54
Alignment explanation
Indices: 7595124--7595229 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 54
7595114 GGATCACATA
7595124 TAGTCCCGAAGGACCACATAGAACCCTCGACTC-TGGCATGCCAACTATACCCC
1 TAGTCCCGAAGGACCACATAGAACCCTCGACTCTTGGCATGCCAACTATACCCC
7595177 TAGTCCCGAAGGACCACATAGAACCCTCGACTCTTGGCATGCCAACTATACCC
1 TAGTCCCGAAGGACCACATAGAACCCTCGACTCTTGGCATGCCAACTATACCC
7595230 TAGCTCTCAT
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
53 33 0.63
54 19 0.37
ACGTcount: A:0.28, C:0.37, G:0.17, T:0.18
Consensus pattern (54 bp):
TAGTCCCGAAGGACCACATAGAACCCTCGACTCTTGGCATGCCAACTATACCCC
Found at i:7595850 original size:3 final size:3
Alignment explanation
Indices: 7595842--7595948 Score: 129
Period size: 3 Copynumber: 37.0 Consensus size: 3
7595832 ATATCGCTCA
7595842 TAT TAT TA- TAT TAT TAT TAGT TAT TAT TAT TA- TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
*
7595886 TAT T-T TAT TAT ATAT GA- TAT TAT TA- TAT TAT TA- TAT TAT GTAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
7595929 TAT TAT TAT TAT TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
7595949 ATATCAATGC
Statistics
Matches: 92, Mismatches: 2, Indels: 20
0.81 0.02 0.18
Matches are distributed among these distances:
2 13 0.14
3 70 0.76
4 9 0.10
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:7595874 original size:24 final size:24
Alignment explanation
Indices: 7595842--7595948 Score: 161
Period size: 24 Copynumber: 4.6 Consensus size: 24
7595832 ATATCGCTCA
7595842 TATTATTATATTAT-TATTAGTTAT
1 TATTATTATATTATGTATTA-TTAT
7595866 TATTATTATATTAT-TATTATTAT
1 TATTATTATATTATGTATTATTAT
7595889 T-TTATTATA-TATGATATTATTA-
1 TATTATTATATTATG-TATTATTAT
7595911 TATTATTATATTATGTATTATTAT
1 TATTATTATATTATGTATTATTAT
7595935 TATTATTATATTAT
1 TATTATTATATTAT
7595949 ATATCAATGC
Statistics
Matches: 78, Mismatches: 0, Indels: 10
0.89 0.00 0.11
Matches are distributed among these distances:
21 3 0.04
22 9 0.12
23 29 0.37
24 37 0.47
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.63
Consensus pattern (24 bp):
TATTATTATATTATGTATTATTAT
Found at i:7599235 original size:43 final size:43
Alignment explanation
Indices: 7599186--7599582 Score: 471
Period size: 43 Copynumber: 9.2 Consensus size: 43
7599176 TGAGAACAAA
* * * * * *
7599186 AAACGCCGCCATAGGTCAATATCTATAACAGCGTTTTTGGAAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGAAC
* **
7599229 AAACGCCGCAAAAGGTCGATATCTATAGCGGCGTTTTTATAAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGAAC
*
7599272 AAACGCCGCAAAAGGTCGAGATATATAGCGGCGTTTTTGGAAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGAAC
* * *
7599315 AAACGCCGCAAAATGTCGAGATTTATAGTGGCGTTTTTGGAAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGAAC
* ** *
7599358 AAACGTCGCAAAAGGTCGAGATCTATAGCGGTATTATTGGACAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGA-AC
* * *
7599402 AAACGTCGTAAAAAGTC-AGATCTATAGCGGCGTTTTTGGAAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGAAC
* * *
7599444 AAACGCCGCAAAAGGT-TAGAT-TATTTGCGGCGCTTTTGGATAC
1 AAACGCCGCAAAAGGTCGAGATCTA-TAGCGGCGTTTTTGGA-AC
*
7599487 AAACGCCGCAAAAAGGTC-AGATCTATAGCGGCATTTTTGGACAC
1 AAACGCCGC-AAAAGGTCGAGATCTATAGCGGCGTTTTTGGA-AC
* *
7599531 AAACGCCGCGAAAGGTC-AGATCTATAGCGGCGTTTTTGGGTAC
1 AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTT-GGAAC
7599574 AAACGCCGC
1 AAACGCCGC
7599583 TAATTACCAT
Statistics
Matches: 308, Mismatches: 38, Indels: 16
0.85 0.10 0.04
Matches are distributed among these distances:
41 2 0.01
42 33 0.11
43 217 0.70
44 54 0.18
45 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (43 bp):
AAACGCCGCAAAAGGTCGAGATCTATAGCGGCGTTTTTGGAAC
Found at i:7602346 original size:41 final size:41
Alignment explanation
Indices: 7602276--7602557 Score: 278
Period size: 41 Copynumber: 6.8 Consensus size: 41
7602266 TTGTAAACTT
* * *
7602276 GCGGCGTTTGTAAATACAAACACCACTAAAGTACGAGTCTATA
1 GCGGCGTTTGT--ATAAAAACGCCACTAAAGTACAAGTCTATA
** * *
7602319 GCGGCGTAAGTATATAAACGACACTAAAGTACAAG-CGTATA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACAAGTC-TATA
* * *
7602360 GCGGCATTTGTTTAAAAACGCCACTAAAGTACAAGTGTATA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACAAGTCTATA
* * * *
7602401 GCAGCGTTTGTAAAAACAAACGCCACAAAATTACAAGTCTATA
1 GCGGCGTTTGT-ATAA-AAACGCCACTAAAGTACAAGTCTATA
* * *
7602444 GCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGCCTTTA
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACAAGTCTATA
* * * * * * *
7602485 GCGGCGTTTTTATACAAACGCCGCTAAAGTACTACTCTGTT
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTACAAGTCTATA
* *
7602526 GTGGTGTTTGTATAAAAACGCCACTAAAGTAC
1 GCGGCGTTTGTATAAAAACGCCACTAAAGTAC
7602558 TACTCTGTTG
Statistics
Matches: 195, Mismatches: 40, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
40 1 0.01
41 147 0.75
42 5 0.03
43 42 0.22
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (41 bp):
GCGGCGTTTGTATAAAAACGCCACTAAAGTACAAGTCTATA
Found at i:7602535 original size:125 final size:125
Alignment explanation
Indices: 7602279--7602637 Score: 334
Period size: 125 Copynumber: 2.9 Consensus size: 125
7602269 TAAACTTGCG
* * * ** * *
7602279 GCGTTTGTAAATACAAACACCACTAAAGTACGAGTCTATAGCGGCGTAAGTATATAAACGACACT
1 GCGTTTGTAAAAACAAACGCCACTAAAGTACAAGTCTATAGCGGCGTTTGTATAAAAACGCCACT
* * * * * * *
7602344 AAAGTACAAGCGTATAGCGGCATTTGTT-TAAAAACGCCACTAAAGTACAAGTGTATAGCA
66 AAAGTACGAGCCTTTAGCGGCGTTT-TTATAAAAACGCCGCTAAAGTACAACTCTATAGCA
* *
7602404 GCGTTTGTAAAAACAAACGCCACAAAATTACAAGTCTATAGCGGCGTTTGTATAAAAACGCCACT
1 GCGTTTGTAAAAACAAACGCCACTAAAGTACAAGTCTATAGCGGCGTTTGTATAAAAACGCCACT
* * * * **
7602469 AAAGTACGAGCCTTTAGCGGCGTTTTTATACAAACGCCGCTAAAGTACTACTCTGTTGTG
66 AAAGTACGAGCCTTTAGCGGCGTTTTTATAAAAACGCCGCTAAAGTACAACTCTATAGCA
* * * * * * * *
7602529 GTGTTTGT-ATAA-AAACGCCACTAAAGTACTACTCTGTTGCGGTGTTTGT-TGAAAAAACGCCG
1 GCGTTTGTAAAAACAAACGCCACTAAAGTACAAGTCTATAGCGGCGTTTGTAT--AAAAACGCCA
* * * *
7602591 TTATAG-ATGAACCTATT-GCGGCGTTTTTATAAAAACGCCGCTAAAGT
64 CTAAAGTACGAGCCT-TTAGCGGCGTTTTTATAAAAACGCCGCTAAAGT
7602638 TACCATTTTG
Statistics
Matches: 193, Mismatches: 37, Indels: 10
0.80 0.15 0.04
Matches are distributed among these distances:
122 1 0.01
123 65 0.34
124 20 0.10
125 107 0.55
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (125 bp):
GCGTTTGTAAAAACAAACGCCACTAAAGTACAAGTCTATAGCGGCGTTTGTATAAAAACGCCACT
AAAGTACGAGCCTTTAGCGGCGTTTTTATAAAAACGCCGCTAAAGTACAACTCTATAGCA
Found at i:7602584 original size:41 final size:41
Alignment explanation
Indices: 7602274--7602637 Score: 204
Period size: 41 Copynumber: 8.8 Consensus size: 41
7602264 AATTGTAAAC
* * * * *
7602274 TTGCGGCGTTTGTAAATACAAACACCACTAAAGTACGAGTCTA
1 TTGCGGCGTTTGT--ATAAAAACGCCACTAAAGTACTACTCTG
* ** * * **
7602317 TAGCGGCGTAAGTATATAAACGACACTAAAGTAC-AAGC-G
1 TTGCGGCGTTTGTATAAAAACGCCACTAAAGTACTACTCTG
* * * * * *
7602356 TATAGCGGCATTTGTTTAAAAACGCCACTAAAGTACAAGTGTA
1 T-T-GCGGCGTTTGTATAAAAACGCCACTAAAGTACTACTCTG
* * * * * * * *
7602399 TAGCAGCGTTTGTAAAAACAAACGCCACAAAATTACAAGTCTA
1 TTGCGGCGTTTGT-ATAA-AAACGCCACTAAAGTACTACTCTG
* *
7602442 TAGCGGCGTTTGTATAAAAACGCCACTAAAGTACGAGC-CT-
1 TTGCGGCGTTTGTATAAAAACGCCACTAAAGTACTA-CTCTG
* * *
7602482 TTAGCGGCGTTTTTATACAAACGCCGCTAAAGTACTACTCTG
1 TT-GCGGCGTTTGTATAAAAACGCCACTAAAGTACTACTCTG
* *
7602524 TTGTGGTGTTTGTATAAAAACGCCACTAAAGTACTACTCTG
1 TTGCGGCGTTTGTATAAAAACGCCACTAAAGTACTACTCTG
* ** * *
7602565 TTGCGGTGTTTGT-TGAAAAAACGCCGTTATAG-A-TGAAC-CTA
1 TTGCGGCGTTTGTAT--AAAAACGCCACTAAAGTACT--ACTCTG
* *
7602606 TTGCGGCGTTTTTATAAAAACGCCGCTAAAGT
1 TTGCGGCGTTTGTATAAAAACGCCACTAAAGT
7602638 TACCATTTTG
Statistics
Matches: 252, Mismatches: 53, Indels: 34
0.74 0.16 0.10
Matches are distributed among these distances:
39 1 0.00
40 20 0.08
41 163 0.65
42 24 0.10
43 44 0.17
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (41 bp):
TTGCGGCGTTTGTATAAAAACGCCACTAAAGTACTACTCTG
Found at i:7602853 original size:41 final size:42
Alignment explanation
Indices: 7602808--7602920 Score: 140
Period size: 41 Copynumber: 2.7 Consensus size: 42
7602798 CTACAGATAG
* * * *
7602808 TACTTTAGTGACATTTTTAAACAAAAGCCGCCAGAGAAT-CT
1 TACTTTAGTGGCATTTCTAAACAAAAGCCACCACAGAATACT
* *
7602849 TACTTTAGTGGCATTTCTAAACAAACGCCACCACAGAATAGT
1 TACTTTAGTGGCATTTCTAAACAAAAGCCACCACAGAATACT
* *
7602891 TA-TTTAGTGGCGTTTCTAAACAAATGCCAC
1 TACTTTAGTGGCATTTCTAAACAAAAGCCAC
7602921 AATAGGTTGG
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 60 0.95
42 3 0.05
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (42 bp):
TACTTTAGTGGCATTTCTAAACAAAAGCCACCACAGAATACT
Found at i:7604263 original size:2 final size:2
Alignment explanation
Indices: 7604258--7604300 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
7604248 TAAAAAAAAC
7604258 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7604300 A
1 A
7604301 CCCCCATCCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7604567 original size:24 final size:24
Alignment explanation
Indices: 7604514--7604627 Score: 144
Period size: 24 Copynumber: 4.8 Consensus size: 24
7604504 CATAAATCAG
* *
7604514 GTCAAGTATCA-TTCAGAAAT-CAG
1 GTCAAGTATCAGATCAG-AATCCAT
* * *
7604537 GTTAAGTAACAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAT
7604561 GTCAAGTATCAGATCAGAATCCAT
1 GTCAAGTATCAGATCAGAATCCAT
7604585 GTC-AGATATCAGATCAGAATCCAT
1 GTCAAG-TATCAGATCAGAATCCAT
7604609 GTCAAGTATCAGATCAGAA
1 GTCAAGTATCAGATCAGAA
7604628 ATCAAATCAA
Statistics
Matches: 80, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
23 14 0.17
24 64 0.80
25 2 0.03
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAT
Found at i:7604644 original size:48 final size:48
Alignment explanation
Indices: 7604546--7604644 Score: 137
Period size: 48 Copynumber: 2.1 Consensus size: 48
7604536 GGTTAAGTAA
** * *
7604546 CAGATCAGAATCCAAGTCAAGTATCAGATCAGAATCCATGTCAGATAT
1 CAGATCAGAATCCAAGTCAAGTATCAGATCAGAATCCAAATCAAAAAT
*
7604594 CAGATCAGAATCCATGTCAAGTATCAGATCAGAAAT-CAAATCAAAAAT
1 CAGATCAGAATCCAAGTCAAGTATCAGATCAG-AATCCAAATCAAAAAT
7604642 CAG
1 CAG
7604645 GTAAAATATT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
48 42 0.93
49 3 0.07
ACGTcount: A:0.43, C:0.20, G:0.15, T:0.21
Consensus pattern (48 bp):
CAGATCAGAATCCAAGTCAAGTATCAGATCAGAATCCAAATCAAAAAT
Found at i:7613323 original size:17 final size:18
Alignment explanation
Indices: 7613301--7613334 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7613291 AAAGAATTTT
7613301 ATTCTTAAATAA-AAATG
1 ATTCTTAAATAACAAATG
*
7613318 ATTCTTACATAACAAAT
1 ATTCTTAAATAACAAAT
7613335 TTATCAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.12, G:0.03, T:0.35
Consensus pattern (18 bp):
ATTCTTAAATAACAAATG
Found at i:7616166 original size:2 final size:2
Alignment explanation
Indices: 7616161--7616202 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
7616151 TGTGGTAGAC
*
7616161 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7616203 TTCTACTTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:7618503 original size:16 final size:16
Alignment explanation
Indices: 7618479--7618552 Score: 62
Period size: 16 Copynumber: 4.6 Consensus size: 16
7618469 AATTCAAAAC
7618479 AAAGCTAACTCAAATTG
1 AAAG-TAACTCAAATTG
*
7618496 AAAGTAAC-CTGAATTG
1 AAAGTAACTC-AAATTG
* **
7618512 AAAGCAA-TCCAAATCA
1 AAAGTAACT-CAAATTG
7618528 AAAGTAACTCAAATTG
1 AAAGTAACTCAAATTG
*
7618544 AAAATAACT
1 AAAGTAACT
7618553 TGATTGAATA
Statistics
Matches: 44, Mismatches: 9, Indels: 9
0.71 0.15 0.15
Matches are distributed among these distances:
15 1 0.02
16 37 0.84
17 6 0.14
ACGTcount: A:0.51, C:0.16, G:0.11, T:0.22
Consensus pattern (16 bp):
AAAGTAACTCAAATTG
Found at i:7618511 original size:48 final size:48
Alignment explanation
Indices: 7618446--7618560 Score: 130
Period size: 48 Copynumber: 2.4 Consensus size: 48
7618436 CAATATGAGG
* *
7618446 TGAAAATAA-CAGAAATTGAAA-CTAATTCAAAAC-AAAGCTAACTCAAAT
1 TGAAAATAACCTG-AATTGAAAGC-AATCCAAAACAAAAG-TAACTCAAAT
* *
7618494 TGAAAGTAACCTGAATTGAAAGCAATCCAAATCAAAAGTAACTCAAAT
1 TGAAAATAACCTGAATTGAAAGCAATCCAAAACAAAAGTAACTCAAAT
*
7618542 TGAAAATAACTTG-ATTGAA
1 TGAAAATAACCTGAATTGAA
7618561 TAGTTTATTT
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
47 6 0.10
48 45 0.78
49 7 0.12
ACGTcount: A:0.52, C:0.14, G:0.11, T:0.23
Consensus pattern (48 bp):
TGAAAATAACCTGAATTGAAAGCAATCCAAAACAAAAGTAACTCAAAT
Found at i:7620686 original size:28 final size:27
Alignment explanation
Indices: 7620625--7620676 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
7620615 CTTCCATTAC
* *
7620625 GTAAAATTATGAAAATACCCTTATGGG
1 GTAAAATTATGAAAATACCCCTAAGGG
*
7620652 GTAAAATTATGAAAATGCCCCTAAG
1 GTAAAATTATGAAAATACCCCTAAG
7620677 TTGTAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.27
Consensus pattern (27 bp):
GTAAAATTATGAAAATACCCCTAAGGG
Found at i:7624225 original size:40 final size:40
Alignment explanation
Indices: 7624159--7624237 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
7624149 ACCGAGCTTC
* *
7624159 CTGATTGAGCCGACCAAGCCGATCGAGCCGCCTGACCGAG
1 CTGACTGAGCCGACCAAGCCGATCGAGCCGCCAGACCGAG
* * *
7624199 CTGACTGAGCCGACCGA-CCTGTTCGAGCTGCCAGACCGA
1 CTGACTGAGCCGACCAAGCC-GATCGAGCCGCCAGACCGA
7624238 TTCGAGTTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
39 2 0.06
40 31 0.94
ACGTcount: A:0.22, C:0.35, G:0.29, T:0.14
Consensus pattern (40 bp):
CTGACTGAGCCGACCAAGCCGATCGAGCCGCCAGACCGAG
Found at i:7624858 original size:27 final size:25
Alignment explanation
Indices: 7624827--7624900 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 25
7624817 CTTGGATGAG
7624827 AAATTATGAAAATACTTCCATTA-GGTA
1 AAATTATGAAAATAC--CC-TTAGGGTA
7624854 AAATTATGAAAATACCCTTATGGGGTA
1 AAATTATGAAAATACCCTTA--GGGTA
*
7624881 AAATTATGAAAATACACTTA
1 AAATTATGAAAATACCCTTA
7624901 AGTTGTAAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
24 3 0.07
25 2 0.05
27 38 0.88
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.31
Consensus pattern (25 bp):
AAATTATGAAAATACCCTTAGGGTA
Found at i:7624910 original size:27 final size:27
Alignment explanation
Indices: 7624850--7624902 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
7624840 ACTTCCATTA
* *
7624850 GGTAAAATTATGAAAATACCCTTATGG
1 GGTAAAATTATGAAAATACACTTAAGG
7624877 GGTAAAATTATGAAAATACACTTAAG
1 GGTAAAATTATGAAAATACACTTAAG
7624903 TTGTAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.28
Consensus pattern (27 bp):
GGTAAAATTATGAAAATACACTTAAGG
Found at i:7633825 original size:29 final size:29
Alignment explanation
Indices: 7633793--7633849 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
7633783 GTCCAAAACG
* *
7633793 TAAATTTTGAAAGTTTAGTGG-CCAAAGTA
1 TAAAGTTTGAAAGGTTAG-GGACCAAAGTA
*
7633822 TAAAGTTTGGAAGGTTAGGGACCAAAGT
1 TAAAGTTTGAAAGGTTAGGGACCAAAGT
7633850 GATACTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 2 0.08
29 22 0.92
ACGTcount: A:0.37, C:0.07, G:0.26, T:0.30
Consensus pattern (29 bp):
TAAAGTTTGAAAGGTTAGGGACCAAAGTA
Found at i:7634952 original size:179 final size:181
Alignment explanation
Indices: 7634652--7635011 Score: 706
Period size: 179 Copynumber: 2.0 Consensus size: 181
7634642 TTCTAAAGCA
7634652 TGTGTGATGATTAAAACAATTGAAATCGAGCTTAATCATGTTCAGCCTAAACCTAGGGTTTTGAA
1 TGTGTGATGATTAAAACAATTGAAATCGAGCTTAATCATGTTCAGCCTAAACCTAGGGTTTTGAA
7634717 GAATTTGTGAGTTGGTTAAATTATATTAGGGGTTTAATTGGAGAAGTTTTGAAATGTTG-TTAGA
66 GAATTTGTGAGTTGGTTAAATTATATTAGGGGTTTAATTGGAGAAGTTTTGAAATGTTGTTTAGA
7634781 GGTTGAATCCATGTTTGAAAC-AAACCATGAAAACCCTACCCTATAAATTT
131 GGTTGAATCCATGTTTGAAACAAAACCATGAAAACCCTACCCTATAAATTT
7634831 TGTGTGATGATTAAAACAATTGAAATCGAGCTTAATCATGTTCAGCCTAAACCTAGGGTTTTGAA
1 TGTGTGATGATTAAAACAATTGAAATCGAGCTTAATCATGTTCAGCCTAAACCTAGGGTTTTGAA
7634896 GAATTTGTGAGTTGGTTAAATTATATTAGGGGTTTAATTGGAGAAGTTTTGAAATGTTGTTTAGA
66 GAATTTGTGAGTTGGTTAAATTATATTAGGGGTTTAATTGGAGAAGTTTTGAAATGTTGTTTAGA
7634961 GGTTGAATCCATGTTTGAAACAAAACCATGAAAACCCTACCCTATAAATTT
131 GGTTGAATCCATGTTTGAAACAAAACCATGAAAACCCTACCCTATAAATTT
7635012 CGGCCATAGT
Statistics
Matches: 179, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
179 124 0.69
180 26 0.15
181 29 0.16
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.35
Consensus pattern (181 bp):
TGTGTGATGATTAAAACAATTGAAATCGAGCTTAATCATGTTCAGCCTAAACCTAGGGTTTTGAA
GAATTTGTGAGTTGGTTAAATTATATTAGGGGTTTAATTGGAGAAGTTTTGAAATGTTGTTTAGA
GGTTGAATCCATGTTTGAAACAAAACCATGAAAACCCTACCCTATAAATTT
Found at i:7636383 original size:31 final size:29
Alignment explanation
Indices: 7636313--7636383 Score: 88
Period size: 31 Copynumber: 2.4 Consensus size: 29
7636303 AATTGGGCAG
*
7636313 TGCTCGACTCGTCTCATTAAAAAATTTGA
1 TGCTCGACTCGTCTCATTAAAAAAATTGA
* *
7636342 TGTTCGACTCGTGCTCATTAAAAAAAATTGC
1 TGCTCGACTCGT-CTCATT-AAAAAAATTGA
*
7636373 TGCTCAACTCG
1 TGCTCGACTCG
7636384 ACTCGTTGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 11 0.31
30 6 0.17
31 18 0.51
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (29 bp):
TGCTCGACTCGTCTCATTAAAAAAATTGA
Found at i:7636421 original size:20 final size:21
Alignment explanation
Indices: 7636380--7636423 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
7636370 TGCTGCTCAA
7636380 CTCGACTCGTTGCTCATTAAG
1 CTCGACTCGTTGCTCATTAAG
*
7636401 CTCGACTCGTTGCT-GTTAAG
1 CTCGACTCGTTGCTCATTAAG
7636421 CTC
1 CTC
7636424 ACTAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.16, C:0.30, G:0.20, T:0.34
Consensus pattern (21 bp):
CTCGACTCGTTGCTCATTAAG
Found at i:7636568 original size:38 final size:38
Alignment explanation
Indices: 7636498--7636590 Score: 102
Period size: 39 Copynumber: 2.4 Consensus size: 38
7636488 GTTGGTTTTT
* *
7636498 TTTATT-AAAATAATATATTAATTAATAATATTTTGTTA
1 TTTATTAAAAATAATAGATTAATTAAT-ATATTTTATTA
*
7636536 TTTATTAAAAATAATAGATTAGTTAACT-TATTTTATTA
1 TTTATTAAAAATAATAGATTAATTAA-TATATTTTATTA
7636574 -TTATTAATAAATTAATA
1 TTTATTAA-AAA-TAATA
7636591 ATATTATTTG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
37 7 0.15
38 18 0.38
39 22 0.46
40 1 0.02
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (38 bp):
TTTATTAAAAATAATAGATTAATTAATATATTTTATTA
Found at i:7640615 original size:17 final size:17
Alignment explanation
Indices: 7640593--7640626 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
7640583 CCGAAAAATT
7640593 ATTAATCTTTTT-ATTAA
1 ATTAAT-TTTTTGATTAA
7640610 ATTAATTTTTTGATTAA
1 ATTAATTTTTTGATTAA
7640627 TCTAGATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (17 bp):
ATTAATTTTTTGATTAA
Found at i:7640899 original size:15 final size:15
Alignment explanation
Indices: 7640879--7640912 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
7640869 CCTTCACACG
7640879 CATTCACGTTTTTTT
1 CATTCACGTTTTTTT
7640894 CATTCACGTTTTTTT
1 CATTCACGTTTTTTT
7640909 CATT
1 CATT
7640913 TTAAGGATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.15, C:0.21, G:0.06, T:0.59
Consensus pattern (15 bp):
CATTCACGTTTTTTT
Found at i:7651536 original size:32 final size:32
Alignment explanation
Indices: 7651468--7651545 Score: 86
Period size: 32 Copynumber: 2.4 Consensus size: 32
7651458 GGTCAATATT
* *
7651468 GGGTCAGGTCAATACCGGATCGATTGATCTTT
1 GGGTCAGGTCAATACCAGATCGATTGATCTTC
* * *
7651500 GGGTCAGGTTAATACCATATCGGTTAGAT-TTC
1 GGGTCAGGTCAATACCAGATCGATT-GATCTTC
*
7651532 GGGTCGGGTCAATA
1 GGGTCAGGTCAATA
7651546 TTGAATTGGT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
32 35 0.92
33 3 0.08
ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31
Consensus pattern (32 bp):
GGGTCAGGTCAATACCAGATCGATTGATCTTC
Found at i:7652181 original size:18 final size:19
Alignment explanation
Indices: 7652144--7652181 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
7652134 TCTTAAACTT
* *
7652144 TCTATTATTTTATTATAAA
1 TCTAATATTTTATAATAAA
7652163 TCTAATATTTT-TAATAAA
1 TCTAATATTTTATAATAAA
7652181 T
1 T
7652182 TATCAATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (19 bp):
TCTAATATTTTATAATAAA
Found at i:7652292 original size:16 final size:16
Alignment explanation
Indices: 7652273--7652386 Score: 75
Period size: 16 Copynumber: 7.1 Consensus size: 16
7652263 TGCTTTTGGG
*
7652273 TCGGGTTAAATTCGGT
1 TCGGGTTAATTTCGGT
* ** *
7652289 TCGGGGTGCTTTCGGA
1 TCGGGTTAATTTCGGT
* *
7652305 TCGGGTTAAAATTCGAT
1 TCGGGTT-AATTTCGGT
* * **
7652322 TCAGATTTCTTTCGGT
1 TCGGGTTAATTTCGGT
*
7652338 TCAGGTTAATTTCGGT
1 TCGGGTTAATTTCGGT
* ** *
7652354 CCGGGTTGCTTTTGGT
1 TCGGGTTAATTTCGGT
7652370 TCGGGTTAATTTCGGT
1 TCGGGTTAATTTCGGT
7652386 T
1 T
7652387 TCGGTTTGGG
Statistics
Matches: 68, Mismatches: 29, Indels: 2
0.69 0.29 0.02
Matches are distributed among these distances:
16 59 0.87
17 9 0.13
ACGTcount: A:0.14, C:0.15, G:0.30, T:0.41
Consensus pattern (16 bp):
TCGGGTTAATTTCGGT
Found at i:7652292 original size:32 final size:32
Alignment explanation
Indices: 7652256--7652386 Score: 136
Period size: 32 Copynumber: 4.1 Consensus size: 32
7652246 TTTTAATCTA
* *
7652256 TTCGGGTTGCTTTTGGGTCGGGTTAAATTCGG
1 TTCGGGTTGCTTTCGGTTCGGGTTAAATTCGG
* * *
7652288 TTCGGGGTGCTTTCGGATCGGGTTAAAATTCGA
1 TTCGGGTTGCTTTCGGTTCGGGTT-AAATTCGG
* * * * *
7652321 TTCAGATTTCTTTCGGTTCAGGTTAATTTCGG
1 TTCGGGTTGCTTTCGGTTCGGGTTAAATTCGG
* * *
7652353 TCCGGGTTGCTTTTGGTTCGGGTTAATTTCGG
1 TTCGGGTTGCTTTCGGTTCGGGTTAAATTCGG
7652385 TT
1 TT
7652387 TCGGTTTGGG
Statistics
Matches: 79, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
32 54 0.68
33 25 0.32
ACGTcount: A:0.12, C:0.15, G:0.31, T:0.42
Consensus pattern (32 bp):
TTCGGGTTGCTTTCGGTTCGGGTTAAATTCGG
Found at i:7653017 original size:29 final size:29
Alignment explanation
Indices: 7652985--7653040 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
7652975 CATAAATATA
*
7652985 AAATTAAA-ATTTTATGTTATAATTATACT
1 AAATCAAAGATTTTATGTTAT-ATTATACT
*
7653014 AAATCAAAGATTTTATTTTATATTATA
1 AAATCAAAGATTTTATGTTATATTATA
7653041 TATTGAATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.48
Consensus pattern (29 bp):
AAATCAAAGATTTTATGTTATATTATACT
Found at i:7655449 original size:2 final size:2
Alignment explanation
Indices: 7655442--7655467 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7655432 ATCAATTTTA
7655442 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7655468 GAACTTATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7658142 original size:31 final size:32
Alignment explanation
Indices: 7658071--7658145 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 32
7658061 CTAATGTGAC
7658071 TCTTAGGTAGG-CTCTGCGGCCATGAGATCAT
1 TCTTAGGTAGGCCTCTGCGGCCATGAGATCAT
** * **
7658102 TCTCGGGTAGGCCT-TGCGGCCCTGAGATTTT
1 TCTTAGGTAGGCCTCTGCGGCCATGAGATCAT
7658133 TCTTAGGTAGGCC
1 TCTTAGGTAGGCC
7658146 CCATCGCCCC
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 34 0.94
32 2 0.06
ACGTcount: A:0.15, C:0.24, G:0.31, T:0.31
Consensus pattern (32 bp):
TCTTAGGTAGGCCTCTGCGGCCATGAGATCAT
Found at i:7660239 original size:19 final size:19
Alignment explanation
Indices: 7660196--7660233 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7660186 AATAGAATTT
*
7660196 TCCTAATTAGAGATCCTAA
1 TCCTAATTAGAGAACCTAA
7660215 TCCTAATTAGAGAACCTAA
1 TCCTAATTAGAGAACCTAA
7660234 ATCTAAACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (19 bp):
TCCTAATTAGAGAACCTAA
Found at i:7661355 original size:16 final size:16
Alignment explanation
Indices: 7661331--7661425 Score: 57
Period size: 16 Copynumber: 5.9 Consensus size: 16
7661321 GAACCGAATT
* *
7661331 TAACCCAAACTGAAAG
1 TAACTCAAACCGAAAG
*
7661347 TAACTCAAACCAAAAG
1 TAACTCAAACCGAAAG
* * * * *
7661363 AAACTCGATCTGAAAA
1 TAACTCAAACCGAAAG
* * *
7661379 TAACCCAAACCAAAAT
1 TAACTCAAACCGAAAG
7661395 TAA-TCCAAACCGAAAG
1 TAACT-CAAACCGAAAG
* *
7661411 TAATTCAAACTGAAA
1 TAACTCAAACCGAAA
7661426 ATTTATATAT
Statistics
Matches: 57, Mismatches: 20, Indels: 4
0.70 0.25 0.05
Matches are distributed among these distances:
16 56 0.98
17 1 0.02
ACGTcount: A:0.53, C:0.23, G:0.08, T:0.16
Consensus pattern (16 bp):
TAACTCAAACCGAAAG
Found at i:7661379 original size:64 final size:64
Alignment explanation
Indices: 7661301--7661420 Score: 161
Period size: 64 Copynumber: 1.9 Consensus size: 64
7661291 ATCCAATTTT
* * * * *
7661301 ACTCGAATCGAAAATAATCCGAACCGAATTTAACCCAAACTGAAAGTAACTCAAACCAAAAGAA
1 ACTCGAATCGAAAATAACCCAAACCAAAATTAACCCAAACCGAAAGTAACTCAAACCAAAAGAA
* *
7661365 ACTCG-ATCTGAAAATAACCCAAACCAAAATTAATCCAAACCGAAAGTAATTCAAAC
1 ACTCGAATC-GAAAATAACCCAAACCAAAATTAACCCAAACCGAAAGTAACTCAAAC
7661421 TGAAAATTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
63 3 0.06
64 45 0.94
ACGTcount: A:0.50, C:0.24, G:0.09, T:0.17
Consensus pattern (64 bp):
ACTCGAATCGAAAATAACCCAAACCAAAATTAACCCAAACCGAAAGTAACTCAAACCAAAAGAA
Found at i:7672322 original size:16 final size:17
Alignment explanation
Indices: 7672288--7672326 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
7672278 TTTTAAATAA
*
7672288 AAATATTTAAAATTATT
1 AAATATTCAAAATTATT
7672305 AAATATTCAAAA-TATT
1 AAATATTCAAAATTATT
7672321 AAATAT
1 AAATAT
7672327 AAAAATAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
AAATATTCAAAATTATT
Found at i:7672709 original size:22 final size:22
Alignment explanation
Indices: 7672653--7672710 Score: 80
Period size: 23 Copynumber: 2.6 Consensus size: 22
7672643 TTGTGACATG
**
7672653 TTCTCTGCCTTCATGGCACGTT
1 TTCTCTGCCTTTTTGGCACGTT
*
7672675 TATCTCTGTCTTTTTGGCACGTT
1 T-TCTCTGCCTTTTTGGCACGTT
7672698 TTCTCTGCCTTTT
1 TTCTCTGCCTTTT
7672711 GGTAGCTTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 12 0.39
23 19 0.61
ACGTcount: A:0.07, C:0.28, G:0.16, T:0.50
Consensus pattern (22 bp):
TTCTCTGCCTTTTTGGCACGTT
Found at i:7673725 original size:22 final size:22
Alignment explanation
Indices: 7673659--7673727 Score: 63
Period size: 21 Copynumber: 3.3 Consensus size: 22
7673649 TAAGTTTAGT
*
7673659 ATTTTTAAT-A-TGAATATTTA
1 ATTTTTAATAATTTAATATTTA
* *
7673679 TTTTTTAATAATTTAAT-TTTT
1 ATTTTTAATAATTTAATATTTA
* * *
7673700 ATTTTTGATATTTTGATATTTA
1 ATTTTTAATAATTTAATATTTA
7673722 ATTTTT
1 ATTTTT
7673728 TAAATATTTG
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 8 0.21
21 17 0.45
22 13 0.34
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65
Consensus pattern (22 bp):
ATTTTTAATAATTTAATATTTA
Found at i:7674163 original size:22 final size:21
Alignment explanation
Indices: 7674134--7674175 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
7674124 TAATCAAATG
7674134 ATATTATTTTAGT-ATTTTTAT
1 ATATTATTTT-GTGATTTTTAT
7674155 ATATATATTTTGTGATTTTTA
1 ATAT-TATTTTGTGATTTTTA
7674176 GGTAGAATCC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (21 bp):
ATATTATTTTGTGATTTTTAT
Found at i:7674858 original size:14 final size:15
Alignment explanation
Indices: 7674828--7674864 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
7674818 ATAAATTAAT
7674828 TAAAA-ATTTAAAGA
1 TAAAATATTTAAAGA
*
7674842 TAAATTATTTAAA-A
1 TAAAATATTTAAAGA
7674856 TAAAATATT
1 TAAAATATT
7674865 AATTATTGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 13 0.65
15 7 0.35
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (15 bp):
TAAAATATTTAAAGA
Found at i:7688045 original size:133 final size:131
Alignment explanation
Indices: 7687804--7688089 Score: 376
Period size: 133 Copynumber: 2.2 Consensus size: 131
7687794 GAAGATTTGG
* * * * * *
7687804 TCTCCATGGAAGAGTAGTGGAAGCAAATCAACCTCGAATTTTATCTTCATGGAAGTAGTGAAGCA
1 TCTCCACGGAAGAGTAGTGGAAGAAAATCAACCTCGAATATGATCTTCATGAAAGTAGTGAAACA
** * *
7687869 GATTCTTTCCAAGTAAATCCAGCCTTCACAAAAGAGTAATGAAGCAGGAACATACCAAAAGTTCG
66 GATTCTTTCCAAACAAATCCAGCCTTCACAAAAGAGTAATGAAGCAAGAACAGACCAAAAGTTCG
7687934 A
131 A
* * *
7687935 TCTCCACGGAAGAGTAGTGGAAGAAAATCAATCTTGAATATGATCTTCATGAAAGAGTAGTTAAA
1 TCTCCACGGAAGAGTAGTGGAAGAAAATCAACCTCGAATATGATCTTCATG-AA-AGTAGTGAAA
* * *
7688000 CAGATTC-TTCTCAAACAAATCCAGCCTTCACAAAAGAGTAGTGAAGCAAGATCAGATCAAAAGT
64 CAGATTCTTTC-CAAACAAATCCAGCCTTCACAAAAGAGTAATGAAGCAAGAACAGACCAAAAGT
7688064 TCGA
128 TCGA
* *
7688068 TCTCTACGAAAGAGTAGTGGAA
1 TCTCCACGGAAGAGTAGTGGAA
7688090 CAAATTTTTA
Statistics
Matches: 134, Mismatches: 18, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
131 45 0.34
132 4 0.03
133 85 0.63
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (131 bp):
TCTCCACGGAAGAGTAGTGGAAGAAAATCAACCTCGAATATGATCTTCATGAAAGTAGTGAAACA
GATTCTTTCCAAACAAATCCAGCCTTCACAAAAGAGTAATGAAGCAAGAACAGACCAAAAGTTCG
A
Found at i:7689504 original size:27 final size:24
Alignment explanation
Indices: 7689445--7689505 Score: 61
Period size: 27 Copynumber: 2.4 Consensus size: 24
7689435 TTATTCCCTA
7689445 AATATATTAATATTTTAAATAAAT
1 AATATATTAATATTTTAAATAAAT
* *
7689469 -ATAGGATTATTTATATTTATAATAAAT
1 AATA-TATTA-ATAT-TTTA-AATAAAT
7689496 AATATATTAA
1 AATATATTAA
7689506 GTAATATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
23 3 0.11
24 4 0.14
25 3 0.11
26 4 0.14
27 11 0.39
28 3 0.11
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (24 bp):
AATATATTAATATTTTAAATAAAT
Found at i:7689547 original size:24 final size:24
Alignment explanation
Indices: 7689520--7689569 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
7689510 TATTTTTATT
7689520 TATATGATTTAAATTAAAATTAAA
1 TATATGATTTAAATTAAAATTAAA
7689544 TATATGATTTAAATTAAAATTAAA
1 TATATGATTTAAATTAAAATTAAA
7689568 TA
1 TA
7689570 CAAATTTGTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (24 bp):
TATATGATTTAAATTAAAATTAAA
Found at i:7696076 original size:33 final size:32
Alignment explanation
Indices: 7696039--7696101 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 32
7696029 CCAAAAAACA
*
7696039 ACCAAAGGATCGATAGAAAATAATA-AAAAATGT
1 ACCAAA-GATAGATA-AAAATAATATAAAAATGT
*
7696072 ACCAAAGATAGATAAAAATGATATAAAAAT
1 ACCAAAGATAGATAAAAATAATATAAAAAT
7696102 AGAGAAATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 8 0.30
32 13 0.48
33 6 0.22
ACGTcount: A:0.60, C:0.08, G:0.13, T:0.19
Consensus pattern (32 bp):
ACCAAAGATAGATAAAAATAATATAAAAATGT
Found at i:7709260 original size:24 final size:24
Alignment explanation
Indices: 7709233--7709339 Score: 99
Period size: 24 Copynumber: 4.5 Consensus size: 24
7709223 AAACGGAGAT
*
7709233 ATCAGAAATCAAAACATAATTCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * *
7709257 ATCAGATATCAGAACAGAATCCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * * *
7709281 GTTAGGAATCAGAAACAGATTTCAG
1 ATCAGAAATCA-AAACAGAATTCAG
** *
7709306 ATCA-ATGTCAAAACAGAATTCAA
1 ATCAGAAATCAAAACAGAATTCAG
7709329 ATCAGAAATCA
1 ATCAGAAATCA
7709340 TATAAATATT
Statistics
Matches: 61, Mismatches: 20, Indels: 4
0.72 0.24 0.05
Matches are distributed among these distances:
23 15 0.25
24 34 0.56
25 12 0.20
ACGTcount: A:0.49, C:0.17, G:0.14, T:0.21
Consensus pattern (24 bp):
ATCAGAAATCAAAACAGAATTCAG
Found at i:7711802 original size:7 final size:7
Alignment explanation
Indices: 7711790--7711821 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
7711780 TGGTCAACTC
7711790 CGGTCAA
1 CGGTCAA
7711797 CGGTCAA
1 CGGTCAA
7711804 CGGGTCAA
1 C-GGTCAA
7711812 CGGTCAA
1 CGGTCAA
7711819 CGG
1 CGG
7711822 GTCGGGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.25, C:0.28, G:0.34, T:0.12
Consensus pattern (7 bp):
CGGTCAA
Found at i:7711811 original size:15 final size:15
Alignment explanation
Indices: 7711791--7711837 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
7711781 GGTCAACTCC
7711791 GGTCAACGGTCAACG
1 GGTCAACGGTCAACG
7711806 GGTCAACGGTCAACG
1 GGTCAACGGTCAACG
*
7711821 GGTC--GGGTCAACG
1 GGTCAACGGTCAACG
7711834 GGTC
1 GGTC
7711838 GGGTCGGGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
13 12 0.39
15 19 0.61
ACGTcount: A:0.21, C:0.26, G:0.38, T:0.15
Consensus pattern (15 bp):
GGTCAACGGTCAACG
Found at i:7711842 original size:18 final size:18
Alignment explanation
Indices: 7711819--7711895 Score: 110
Period size: 18 Copynumber: 4.6 Consensus size: 18
7711809 CAACGGTCAA
7711819 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACGGGT
7711837 CGGGTCGGGTCAA-----
1 CGGGTCGGGTCAACGGGT
*
7711850 CGGGTCGGGTAAACGGGT
1 CGGGTCGGGTCAACGGGT
7711868 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACGGGT
7711886 CGGGTCGGGT
1 CGGGTCGGGT
7711896 TGTGACCGGT
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
13 12 0.23
18 40 0.77
ACGTcount: A:0.12, C:0.21, G:0.51, T:0.17
Consensus pattern (18 bp):
CGGGTCGGGTCAACGGGT
Found at i:7711851 original size:31 final size:31
Alignment explanation
Indices: 7711813--7711891 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
7711803 ACGGGTCAAC
7711813 GGTCAACGGGTCGGGTCAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCAACGGGTCGGGTCG
*
7711844 GGTCAACGGGTCGGGTAAACGGGTCGGGTCG
1 GGTCAACGGGTCGGGTCAACGGGTCGGGTCG
7711875 GGTCAACGGGTCGGGTC
1 GGTCAACGGGTCGGGTC
7711892 GGGTTGTGAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.14, C:0.22, G:0.48, T:0.16
Consensus pattern (31 bp):
GGTCAACGGGTCGGGTCAACGGGTCGGGTCG
Found at i:7711855 original size:8 final size:8
Alignment explanation
Indices: 7711791--7711837 Score: 59
Period size: 8 Copynumber: 6.5 Consensus size: 8
7711781 GGTCAACTCC
7711791 GGTCAAC-
1 GGTCAACG
7711798 GGTCAACG
1 GGTCAACG
7711806 GGTCAAC-
1 GGTCAACG
7711813 GGTCAACG
1 GGTCAACG
7711821 GGT---CG
1 GGTCAACG
7711826 GGTCAACG
1 GGTCAACG
7711834 GGTC
1 GGTC
7711838 GGGTCGGGTC
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
5 5 0.14
7 14 0.40
8 16 0.46
ACGTcount: A:0.21, C:0.26, G:0.38, T:0.15
Consensus pattern (8 bp):
GGTCAACG
Found at i:7711891 original size:13 final size:13
Alignment explanation
Indices: 7711798--7711873 Score: 71
Period size: 13 Copynumber: 5.3 Consensus size: 13
7711788 TCCGGTCAAC
*
7711798 GGTCAACGGGTCAAC
1 GGTCAACGGGTC--G
7711813 GGTCAACGGGTCG
1 GGTCAACGGGTCG
7711826 GGTCAACGGGTCGGGTCG
1 GGTCAA-----CGGGTCG
7711844 GGTCAACGGGTCG
1 GGTCAACGGGTCG
*
7711857 GGTAAACGGGTCG
1 GGTCAACGGGTCG
7711870 GGTC
1 GGTC
7711874 GGGTCAACGG
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
13 28 0.53
15 12 0.23
18 13 0.25
ACGTcount: A:0.17, C:0.22, G:0.45, T:0.16
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:7713856 original size:2 final size:2
Alignment explanation
Indices: 7713849--7713890 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
7713839 CTTTTAAAAC
7713849 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7713890 A
1 A
7713891 CCCCCATCCG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7714079 original size:24 final size:24
Alignment explanation
Indices: 7714052--7714156 Score: 79
Period size: 24 Copynumber: 4.5 Consensus size: 24
7714042 AAACGGAGAT
*
7714052 ATCAGAAATCAAAACATAATTCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * *
7714076 ATCAGATATC-AGA-AGAATCCAG
1 ATCAGAAATCAAAACAGAATTCAG
* * * * * *
7714098 GTTAGGAATCAGAGCAGATTTCAG
1 ATCAGAAATCAAAACAGAATTCAG
** *
7714122 ATCAGATGTCAAAACAGAATTCAA
1 ATCAGAAATCAAAACAGAATTCAG
7714146 ATCAGAAATCA
1 ATCAGAAATCA
7714157 GATAAAATAT
Statistics
Matches: 55, Mismatches: 24, Indels: 4
0.66 0.29 0.05
Matches are distributed among these distances:
22 13 0.24
23 2 0.04
24 40 0.73
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.21
Consensus pattern (24 bp):
ATCAGAAATCAAAACAGAATTCAG
Found at i:7716631 original size:15 final size:15
Alignment explanation
Indices: 7716611--7716644 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
7716601 GGTCAACTCC
7716611 GGTCAACGGTCAACG
1 GGTCAACGGTCAACG
7716626 GGTCAACGGTCAACG
1 GGTCAACGGTCAACG
7716641 GGTC
1 GGTC
7716645 GGGTCAAACG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.24, C:0.26, G:0.35, T:0.15
Consensus pattern (15 bp):
GGTCAACGGTCAACG
Found at i:7716644 original size:8 final size:7
Alignment explanation
Indices: 7716610--7716641 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
7716600 TGGTCAACTC
7716610 CGGTCAA
1 CGGTCAA
7716617 CGGTCAA
1 CGGTCAA
7716624 CGGGTCAA
1 C-GGTCAA
7716632 CGGTCAA
1 CGGTCAA
7716639 CGG
1 CGG
7716642 GTCGGGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.25, C:0.28, G:0.34, T:0.12
Consensus pattern (7 bp):
CGGTCAA
Found at i:7716656 original size:14 final size:13
Alignment explanation
Indices: 7716618--7716663 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 13
7716608 TCCGGTCAAC
*
7716618 GGTCAACGGGTCAAC
1 GGTCAACGGGTC--G
7716633 GGTCAACGGGTCG
1 GGTCAACGGGTCG
7716646 GGTCAAACGGGTCG
1 GGTC-AACGGGTCG
7716660 GGTC
1 GGTC
7716664 GGGTCACGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 4 0.14
14 13 0.45
15 12 0.41
ACGTcount: A:0.20, C:0.24, G:0.41, T:0.15
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:7716661 original size:5 final size:5
Alignment explanation
Indices: 7716653--7716715 Score: 54
Period size: 5 Copynumber: 11.0 Consensus size: 5
7716643 TCGGGTCAAA
7716653 CGGGT CGGGT CGGGT CACGGGT CGGGGT AACGGGT CGGGT CGGGT CAACGGGT
1 CGGGT CGGGT CGGGT --CGGGT C-GGGT --CGGGT CGGGT CGGGT ---CGGGT
7716706 CGGGT CGGGT
1 CGGGT CGGGT
7716716 TGTGACCGGT
Statistics
Matches: 50, Mismatches: 0, Indels: 16
0.76 0.00 0.24
Matches are distributed among these distances:
5 31 0.62
6 4 0.08
7 9 0.18
8 6 0.12
ACGTcount: A:0.08, C:0.21, G:0.54, T:0.17
Consensus pattern (5 bp):
CGGGT
Found at i:7716711 original size:13 final size:12
Alignment explanation
Indices: 7716658--7716693 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
7716648 TCAAACGGGT
7716658 CGGGTCGGGTCA
1 CGGGTCGGGTCA
*
7716670 CGGGTCGGGGTAA
1 CGGGTC-GGGTCA
7716683 CGGGTCGGGTC
1 CGGGTCGGGTC
7716694 GGGTCAACGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.08, C:0.22, G:0.53, T:0.17
Consensus pattern (12 bp):
CGGGTCGGGTCA
Found at i:7716715 original size:18 final size:18
Alignment explanation
Indices: 7716639--7716715 Score: 103
Period size: 18 Copynumber: 4.6 Consensus size: 18
7716629 CAACGGTCAA
7716639 CGGGTCGGGTCAAACGGGT
1 CGGGTCGGGTC-AACGGGT
7716658 CGGGTCGGGTC-ACGGGT
1 CGGGTCGGGTCAACGGGT
7716675 C--G--GGGT-AACGGGT
1 CGGGTCGGGTCAACGGGT
7716688 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACGGGT
7716706 CGGGTCGGGT
1 CGGGTCGGGT
7716716 TGTGACCGGT
Statistics
Matches: 52, Mismatches: 0, Indels: 13
0.80 0.00 0.20
Matches are distributed among these distances:
13 11 0.21
15 2 0.04
17 11 0.21
18 17 0.33
19 11 0.21
ACGTcount: A:0.10, C:0.21, G:0.52, T:0.17
Consensus pattern (18 bp):
CGGGTCGGGTCAACGGGT
Done.