Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8646418
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 39 of 43
Found at i:7857159 original size:19 final size:20
Alignment explanation
Indices: 7857135--7857188 Score: 67
Period size: 19 Copynumber: 2.7 Consensus size: 20
7857125 AAATCGCAAC
7857135 GCGATTTTAGTTTT-GTGTT
1 GCGATTTTAGTTTTCGTGTT
7857154 GCGATTTTCA-TTTTCGTGTT
1 GCGATTTT-AGTTTTCGTGTT
*
7857174 GCGAATTTAAGTTTT
1 GCG-ATTTTAGTTTT
7857189 AGAAACTGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 12 0.40
20 10 0.33
21 8 0.27
ACGTcount: A:0.15, C:0.09, G:0.22, T:0.54
Consensus pattern (20 bp):
GCGATTTTAGTTTTCGTGTT
Found at i:7859038 original size:24 final size:24
Alignment explanation
Indices: 7859004--7859057 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
7858994 CCATCACATC
7859004 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
7859028 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
7859052 ATCAAA
1 ATCAAA
7859058 TTTCAAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:7859821 original size:17 final size:18
Alignment explanation
Indices: 7859799--7859832 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
7859789 GAAATCATTG
7859799 AAAAATTATAT-AGAAAT
1 AAAAATTATATAAGAAAT
7859816 AAAAATTATATAAGAAA
1 AAAAATTATATAAGAAA
7859833 ATTAGAGATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (18 bp):
AAAAATTATATAAGAAAT
Found at i:7860016 original size:19 final size:18
Alignment explanation
Indices: 7859973--7860019 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7859963 CAAAACATTT
7859973 GTGTTGCGAAACTAAAAC
1 GTGTTGCGAAACTAAAAC
* * *
7859991 CTGTTGCGAAATTAAATTC
1 GTGTTGCGAAACTAAA-AC
7860010 GTGTTGCGAA
1 GTGTTGCGAA
7860020 TTCGAAAATC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (18 bp):
GTGTTGCGAAACTAAAAC
Found at i:7860053 original size:19 final size:19
Alignment explanation
Indices: 7859993--7860124 Score: 113
Period size: 19 Copynumber: 6.7 Consensus size: 19
7859983 ACTAAAACCT
* *
7859993 GTTGCGAAATT-AAATTCGT
1 GTTGCGAATTTGAAATTC-A
* *
7860012 GTTGCGAATTCGAAAATCTA
1 GTTGCGAATTTGAAATTC-A
*
7860032 GTTACGAATTTGAAATTCA
1 GTTGCGAATTTGAAATTCA
*
7860051 GTTGCGGATTTGAAATTCA
1 GTTGCGAATTTGAAATTCA
*
7860070 ATTGCGAATTTGAAATTCTA
1 GTTGCGAATTTGAAATTC-A
* * *
7860090 CATTGCAAATTTGAAATTCC
1 -GTTGCGAATTTGAAATTCA
7860110 GCATTGCGAATTTGA
1 G--TTGCGAATTTGA
7860125 CTTTTGTTTT
Statistics
Matches: 92, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
19 43 0.47
20 21 0.23
21 28 0.30
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.36
Consensus pattern (19 bp):
GTTGCGAATTTGAAATTCA
Found at i:7860201 original size:40 final size:39
Alignment explanation
Indices: 7860097--7860206 Score: 112
Period size: 40 Copynumber: 2.7 Consensus size: 39
7860087 CTACATTGCA
* * *
7860097 AATTTGAAATTCCGCATTGCGAATTTGACTTTTGTTTTGCG
1 AATTT-AAATT-CGCATTGCGAATTTGACTTCTGTGTTACG
** * *
7860138 AATTTAGCTATCGCGTTGTGAATTTGACTTCTGTGTTACG
1 AATTTAAAT-TCGCATTGCGAATTTGACTTCTGTGTTACG
*
7860178 ATTTATAAATTCGCATTGCGAATTTGACT
1 AATT-TAAATTCGCATTGCGAATTTGACT
7860207 ATCGTATTGC
Statistics
Matches: 55, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
40 46 0.84
41 9 0.16
ACGTcount: A:0.24, C:0.15, G:0.19, T:0.43
Consensus pattern (39 bp):
AATTTAAATTCGCATTGCGAATTTGACTTCTGTGTTACG
Found at i:7860216 original size:100 final size:100
Alignment explanation
Indices: 7860112--7860299 Score: 254
Period size: 100 Copynumber: 1.9 Consensus size: 100
7860102 GAAATTCCGC
* * * * * *
7860112 ATTGCGAATTTGACTTTTGTTTTGCGAATTT-AGCTATCGCGTTGTGAATTTGA-CTTCTGTGTT
1 ATTGCGAATTTAACTTTTGTGTTACAAATTTGA-CTATCGCGTTGCGAATTT-ACCTTATGTGTT
*
7860175 ACGATTTATAAATTCGCATTGCGAATTTGACTATCGT
64 ACGATTTACAAATTCGCATTGCGAATTTGACTATCGT
*
7860212 ATTGCTAATTTAACTTTTGTGTTACAAATTTGACTATCGCGTTGCGAATTTACCTTATGTGTTAC
1 ATTGCGAATTTAACTTTTGTGTTACAAATTTGACTATCGCGTTGCGAATTTACCTTATGTGTTAC
* *
7860277 GATTTACATATTCGCGTTGCGAA
66 GATTTACAAATTCGCATTGCGAA
7860300 ATTAAAAATT
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
99 1 0.01
100 74 0.97
101 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.19, T:0.43
Consensus pattern (100 bp):
ATTGCGAATTTAACTTTTGTGTTACAAATTTGACTATCGCGTTGCGAATTTACCTTATGTGTTAC
GATTTACAAATTCGCATTGCGAATTTGACTATCGT
Found at i:7860261 original size:20 final size:20
Alignment explanation
Indices: 7860113--7860262 Score: 81
Period size: 20 Copynumber: 7.5 Consensus size: 20
7860103 AAATTCCGCA
* * *
7860113 TTGCGAATTTGACTTTTGTT
1 TTGCGAATTTGACTATCGTG
*
7860133 TTGCGAATTT-AGCTATCGCG
1 TTGCGAATTTGA-CTATCGTG
*
7860153 TTGTGAATTTGACT-TCTGTG
1 TTGCGAATTTGACTATC-GTG
* * * * **
7860173 TTACGATTTATAAAT-TCGCA
1 TTGCGAATT-TGACTATCGTG
*
7860193 TTGCGAATTTGACTATCGTA
1 TTGCGAATTTGACTATCGTG
* * * *
7860213 TTGCTAATTTAACTTTTGTG
1 TTGCGAATTTGACTATCGTG
* * *
7860233 TTACAAATTTGACTATCGCG
1 TTGCGAATTTGACTATCGTG
7860253 TTGCGAATTT
1 TTGCGAATTT
7860263 ACCTTATGTG
Statistics
Matches: 94, Mismatches: 31, Indels: 10
0.70 0.23 0.07
Matches are distributed among these distances:
19 6 0.06
20 82 0.87
21 6 0.06
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.45
Consensus pattern (20 bp):
TTGCGAATTTGACTATCGTG
Found at i:7860292 original size:40 final size:40
Alignment explanation
Indices: 7860198--7860304 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 40
7860188 TCGCATTGCG
** * *
7860198 AATTTGACTATCGTATTGCTAATTTAACTTTTGTGTTACA
1 AATTTGACTATCGCGTTGCGAATTTAACTTATGTGTTACA
*
7860238 AATTTGACTATCGCGTTGCGAATTTACCTTATGTGTTAC-
1 AATTTGACTATCGCGTTGCGAATTTAACTTATGTGTTACA
* *
7860277 GATTT-ACATATTCGCGTTGCGAAATTAA
1 AATTTGAC-TA-TCGCGTTGCGAATTTAA
7860305 AAATTGGGTT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
38 2 0.04
39 6 0.11
40 49 0.86
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (40 bp):
AATTTGACTATCGCGTTGCGAATTTAACTTATGTGTTACA
Found at i:7863944 original size:24 final size:24
Alignment explanation
Indices: 7863917--7863963 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7863907 TATATTGAAG
7863917 AAATAAATATAAAAAAT-AAAAATT
1 AAATAAATA-AAAAAATCAAAAATT
* *
7863941 AAATTACTAAAAAAATCAAAAAT
1 AAATAAATAAAAAAATCAAAAAT
7863964 ATATATATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.23
Consensus pattern (24 bp):
AAATAAATAAAAAAATCAAAAATT
Found at i:7864559 original size:20 final size:21
Alignment explanation
Indices: 7864534--7864573 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7864524 CCATCTGTCA
* *
7864534 CGTCAT-TCACTATTATGAAT
1 CGTCATGTCAATATCATGAAT
7864554 CGTCATGTCAATATCATGAA
1 CGTCATGTCAATATCATGAA
7864574 ATGATACGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (21 bp):
CGTCATGTCAATATCATGAAT
Found at i:7865343 original size:15 final size:16
Alignment explanation
Indices: 7865325--7865357 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7865315 AATATTCAAA
7865325 TTAAAAATAT-AAATT
1 TTAAAAATATAAAATT
*
7865340 TTAAAAATCTAAAATT
1 TTAAAAATATAAAATT
7865356 TT
1 TT
7865358 TAATATAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TTAAAAATATAAAATT
Found at i:7873102 original size:39 final size:35
Alignment explanation
Indices: 7873040--7873119 Score: 88
Period size: 39 Copynumber: 2.2 Consensus size: 35
7873030 ATTTAGTTAA
*
7873040 TAATAAAAACATAAATAACAATAAACATATAATTATAT
1 TAATAAAAACATAAATAAAAATAAA-ATA-AATTAT-T
** *
7873078 TAATATAAAACATATTTAAAAATAAATTAAATTATT
1 TAATA-AAAACATAAATAAAAATAAAATAAATTATT
7873114 TAATAA
1 TAATAA
7873120 GTCAACCTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
35 1 0.03
36 6 0.16
37 6 0.16
38 7 0.19
39 17 0.46
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (35 bp):
TAATAAAAACATAAATAAAAATAAAATAAATTATT
Found at i:7880227 original size:16 final size:16
Alignment explanation
Indices: 7880206--7880236 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7880196 AAAAAAATCA
*
7880206 GATATCCGAATTTTCG
1 GATATCCGAAATTTCG
7880222 GATATCCGAAATTTC
1 GATATCCGAAATTTC
7880237 TGATCGGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (16 bp):
GATATCCGAAATTTCG
Found at i:7881489 original size:7 final size:7
Alignment explanation
Indices: 7881471--7881504 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
7881461 TAAAAATTAA
7881471 AAAATAT
1 AAAATAT
7881478 AAAATAT
1 AAAATAT
7881485 AAAATAT
1 AAAATAT
7881492 AAAATAT
1 AAAATAT
7881499 AAAATA
1 AAAATA
7881505 ATATTATAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
AAAATAT
Found at i:7881550 original size:29 final size:27
Alignment explanation
Indices: 7881493--7881566 Score: 80
Period size: 29 Copynumber: 2.7 Consensus size: 27
7881483 ATAAAATATA
*
7881493 AAATATAAAATAA-TATTA-TAATTTAT
1 AAATATAAAA-AATTATAATTAATTTAT
* *
7881519 AAATATTAAATATCTATAATTAATATTAT
1 AAATATAAAAAAT-TATAATTAAT-TTAT
7881548 AAATATAAAAAATTATAAT
1 AAATATAAAAAATTATAAT
7881567 ATATTAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
25 1 0.03
26 9 0.23
27 4 0.10
28 10 0.26
29 15 0.38
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (27 bp):
AAATATAAAAAATTATAATTAATTTAT
Found at i:7883686 original size:56 final size:56
Alignment explanation
Indices: 7883595--7883711 Score: 173
Period size: 56 Copynumber: 2.1 Consensus size: 56
7883585 CTTAACGGTG
* * *
7883595 ATGTCAATATCTGACTGGATTGAGAATAAAATAACAGTAAGAAAAAATCT-TCAATC
1 ATGTTAATATCTAACTGGATGGAGAATAAAATAACAGTAAGAAAAAATCTCT-AATC
* *
7883651 ATGTTAATATCTAATTGGATGGAGAATAAAATAACATTAAGAAAAAATCTCTAATC
1 ATGTTAATATCTAACTGGATGGAGAATAAAATAACAGTAAGAAAAAATCTCTAATC
7883707 ATGTT
1 ATGTT
7883712 GTGTCACTTA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
56 54 0.98
57 1 0.02
ACGTcount: A:0.46, C:0.10, G:0.14, T:0.30
Consensus pattern (56 bp):
ATGTTAATATCTAACTGGATGGAGAATAAAATAACAGTAAGAAAAAATCTCTAATC
Found at i:7886383 original size:7 final size:7
Alignment explanation
Indices: 7886361--7886407 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
7886351 TTGGGCTTAA
7886361 AATAAA-
1 AATAAAG
*
7886367 AAGAAA-
1 AATAAAG
7886373 AATAAAG
1 AATAAAG
*
7886380 AATAAAAA
1 AAT-AAAG
7886388 AATAAAG
1 AATAAAG
7886395 AATAAAG
1 AATAAAG
7886402 AATAAA
1 AATAAA
7886408 CAAAACAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
6 10 0.29
7 19 0.54
8 6 0.17
ACGTcount: A:0.79, C:0.00, G:0.09, T:0.13
Consensus pattern (7 bp):
AATAAAG
Found at i:7886390 original size:15 final size:15
Alignment explanation
Indices: 7886370--7886421 Score: 63
Period size: 14 Copynumber: 3.6 Consensus size: 15
7886360 AAATAAAAAG
7886370 AAAAATAAAGAATAA
1 AAAAATAAAGAATAA
7886385 AAAAATAAAGAAT-A
1 AAAAATAAAGAATAA
* *
7886399 AAGAATAAACAA-AA
1 AAAAATAAAGAATAA
*
7886413 CAAAATAAA
1 AAAAATAAA
7886422 TAAATAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
14 19 0.59
15 13 0.41
ACGTcount: A:0.79, C:0.04, G:0.06, T:0.12
Consensus pattern (15 bp):
AAAAATAAAGAATAA
Found at i:7886398 original size:22 final size:21
Alignment explanation
Indices: 7886364--7886421 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
7886354 GGCTTAAAAT
7886364 AAAAAGAAAAATAAAGAATAA
1 AAAAAGAAAAATAAAGAATAA
*
7886385 AAAAATAAAGAATAAAGAATAA
1 AAAAAGAAA-AATAAAGAATAA
*
7886407 ACAAAA-CAAAATAAA
1 A-AAAAGAAAAATAAA
7886422 TAAATAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.42
22 15 0.45
23 4 0.12
ACGTcount: A:0.79, C:0.03, G:0.07, T:0.10
Consensus pattern (21 bp):
AAAAAGAAAAATAAAGAATAA
Found at i:7886424 original size:4 final size:4
Alignment explanation
Indices: 7886415--7886444 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
7886405 AAACAAAACA
7886415 AAAT AAAT AAAT AAAT ACAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT A-AAT AAAT AAAT A
7886445 TAATGTAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:7886438 original size:13 final size:12
Alignment explanation
Indices: 7886415--7886444 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
7886405 AAACAAAACA
7886415 AAATAAATAAAT
1 AAATAAATAAAT
7886427 AAATACAATAAAT
1 AAATA-AATAAAT
7886440 AAATA
1 AAATA
7886445 TAATGTAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATAAATAAAT
Found at i:7886562 original size:38 final size:36
Alignment explanation
Indices: 7886519--7886696 Score: 130
Period size: 38 Copynumber: 4.9 Consensus size: 36
7886509 AAAAATCGTT
*
7886519 TTTAAAAATTTTATATTATACGTTTTCAAAAATATCC
1 TTTAAAAATTATATATTATACGTTTTCAAAAA-ATCC
* * *
7886556 TATTAAAGATTATATATTATATACGTTTT-TAAAAATGC
1 T-TTAAAAATTATATA-T-TATACGTTTTCAAAAAATCC
* * * **
7886594 TTTCAAAACTATATATTATATGTTTTC--AAAATGT
1 TTTAAAAATTATATATTATACGTTTTCAAAAAATCC
* ** **
7886628 TTTAAAAACTATATATTATATATATTTTCAAAAAATGT
1 TTTAAAAATTATATA-T-TATACGTTTTCAAAAAATCC
* *
7886666 TTTCAAAATTATATATTATATGTTTT-AAAAA
1 TTTAAAAATTATATATTATACGTTTTCAAAAA
7886697 CTATATATTA
Statistics
Matches: 119, Mismatches: 14, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
34 20 0.17
35 15 0.13
36 20 0.17
37 13 0.11
38 36 0.30
39 5 0.04
40 10 0.08
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (36 bp):
TTTAAAAATTATATATTATACGTTTTCAAAAAATCC
Found at i:7886692 original size:61 final size:60
Alignment explanation
Indices: 7886624--7886746 Score: 201
Period size: 61 Copynumber: 2.0 Consensus size: 60
7886614 TGTTTTCAAA
* *
7886624 ATGTTTTAAAAACTATATATTATATATATTTTCAAAAAATGTTTTCAAAATTATATATTAT
1 ATGTTTTAAAAACTATATATTATATATATTTT-AAAAAATATTTTCAAAACTATATATTAT
* *
7886685 ATGTTTTAAAAACTATATATTATATATATTTTTAAAAATATTTTCGAAACTATATATTAT
1 ATGTTTTAAAAACTATATATTATATATATTTTAAAAAATATTTTCAAAACTATATATTAT
7886745 AT
1 AT
7886747 ATGTTATATA
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
60 26 0.45
61 32 0.55
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (60 bp):
ATGTTTTAAAAACTATATATTATATATATTTTAAAAAATATTTTCAAAACTATATATTAT
Found at i:7886711 original size:25 final size:23
Alignment explanation
Indices: 7886662--7886709 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
7886652 TTTTCAAAAA
* *
7886662 ATGTTTTCAAAATTATATATTAT
1 ATGTTTTAAAAACTATATATTAT
7886685 ATGTTTTAAAAACTATATATTAT
1 ATGTTTTAAAAACTATATATTAT
7886708 AT
1 AT
7886710 ATATTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (23 bp):
ATGTTTTAAAAACTATATATTAT
Found at i:7886716 original size:25 final size:24
Alignment explanation
Indices: 7886665--7886722 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
7886655 TCAAAAAATG
* * *
7886665 TTTTCAAAATTATATATTATAT-G
1 TTTTAAAAACTATATATTATATAT
7886688 TTTTAAAAACTATATATTATATATAT
1 TTTTAAAAACTATATA-T-TATATAT
7886714 TTTTAAAAA
1 TTTTAAAAA
7886723 TATTTTCGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 14 0.48
24 1 0.03
25 5 0.17
26 9 0.31
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (24 bp):
TTTTAAAAACTATATATTATATAT
Found at i:7887250 original size:15 final size:15
Alignment explanation
Indices: 7887226--7887272 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
7887216 TTATTTAATA
*
7887226 TATATATATATATAT
1 TATATTTATATATAT
*
7887241 TATATTTATA-ATGT
1 TATATTTATATATAT
*
7887255 GTATATTTATTTATAT
1 -TATATTTATATATAT
7887271 TA
1 TA
7887273 ATGTTGTCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 3 0.12
15 20 0.77
16 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.57
Consensus pattern (15 bp):
TATATTTATATATAT
Found at i:7890490 original size:20 final size:20
Alignment explanation
Indices: 7890465--7890519 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
7890455 GAGGGTTCAT
7890465 AGGTCCTTCGGGACATACAG
1 AGGTCCTTCGGGACATACAG
*
7890485 AGGTCCTTCGGGACATACAT
1 AGGTCCTTCGGGACATACAG
* *
7890505 AGGTCATTCGAGACA
1 AGGTCCTTCGGGACA
7890520 ATTTTCACAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (20 bp):
AGGTCCTTCGGGACATACAG
Found at i:7892080 original size:24 final size:24
Alignment explanation
Indices: 7892020--7892080 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
7892010 AAAGAAATAT
7892020 GTTTCTTACTTTT-AATCAAACTAG
1 GTTTCTTA-TTTTCAATCAAACTAG
* * *
7892044 ATTTCTTAGTTTCAATCAAATTAG
1 GTTTCTTATTTTCAATCAAACTAG
*
7892068 GTTTCATATTTTC
1 GTTTCTTATTTTC
7892081 TTCAATTATC
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
23 3 0.10
24 27 0.90
ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49
Consensus pattern (24 bp):
GTTTCTTATTTTCAATCAAACTAG
Found at i:7893428 original size:22 final size:21
Alignment explanation
Indices: 7893394--7893443 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
7893384 ATAATCATTT
7893394 AAAAA-ATTAAATAAAAATACC
1 AAAAACATTAAATAAAAA-ACC
* *
7893415 AAAAACATTTAATAAAAAACT
1 AAAAACATTAAATAAAAAACC
7893436 AAAAACAT
1 AAAAACAT
7893444 CCCCACAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.70, C:0.10, G:0.00, T:0.20
Consensus pattern (21 bp):
AAAAACATTAAATAAAAAACC
Found at i:7894159 original size:27 final size:26
Alignment explanation
Indices: 7894107--7894161 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
7894097 TGTTACCTAC
*
7894107 AATATTATTTTTCTACCAGAACTGTT
1 AATATTATTTTTCTACCAGAAATGTT
*
7894133 AATATTATATATTT-TACTAGAAATGTT
1 AATATTAT-T-TTTCTACCAGAAATGTT
7894160 AA
1 AA
7894162 AAAATATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 8 0.32
27 14 0.56
28 3 0.12
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.45
Consensus pattern (26 bp):
AATATTATTTTTCTACCAGAAATGTT
Found at i:7894192 original size:20 final size:22
Alignment explanation
Indices: 7894159--7894199 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
7894149 CTAGAAATGT
*
7894159 TAAAAAATATTAATGTTTTAGG
1 TAAAAAATATTAATATTTTAGG
7894181 TAAAAAA-A-TAATATTTTAG
1 TAAAAAATATTAATATTTTAG
7894200 ATAATATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 1 0.06
22 7 0.39
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (22 bp):
TAAAAAATATTAATATTTTAGG
Found at i:7907612 original size:18 final size:16
Alignment explanation
Indices: 7907573--7907603 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7907563 TTTATCTTAA
7907573 ATTTTAAAATATATTG
1 ATTTTAAAATATATTG
7907589 ATTTTAAAATATATT
1 ATTTTAAAATATATT
7907604 TTATTTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (16 bp):
ATTTTAAAATATATTG
Found at i:7907657 original size:44 final size:43
Alignment explanation
Indices: 7907508--7907679 Score: 163
Period size: 44 Copynumber: 3.9 Consensus size: 43
7907498 CATTAAAAAT
*
7907508 ATATATTTTATTTTTATCTTAATTTTAAATATT--A-TAAGAATAA
1 ATATATTTTATTTTTATCTTAATTTT-AAT-TTAAATTAA-ATTAA
** * **
7907551 AGTATA-TTTATTTTTATCTTAAATTTTAAAATATATTGATTTTAAA
1 A-TATATTTTATTTTTATCTT-AATTTTAATTTAAATT-AAATT-AA
* *
7907597 ATATATTTTATTTTTATCTTACTTTTGATTTAAATTAAATTAA
1 ATATATTTTATTTTTATCTTAATTTTAATTTAAATTAAATTAA
*
7907640 ATATATTTTATTTTTTATCTTAATTTTAATTTAACTTAAA
1 ATATATTTTA-TTTTTATCTTAATTTTAATTTAAATTAAA
7907680 AATGTATTTT
Statistics
Matches: 105, Mismatches: 15, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
42 1 0.01
43 29 0.28
44 40 0.38
45 17 0.16
46 18 0.17
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.56
Consensus pattern (43 bp):
ATATATTTTATTTTTATCTTAATTTTAATTTAAATTAAATTAA
Found at i:7907714 original size:21 final size:22
Alignment explanation
Indices: 7907689--7907734 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
7907679 AAATGTATTT
7907689 TTTATTACTTTAA-CTTA-AATA
1 TTTATT-CTTTAATCTTATAATA
*
7907710 TTTATTTTTTAATCTTATAATA
1 TTTATTCTTTAATCTTATAATA
7907732 TTT
1 TTT
7907735 TAAAATTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 5 0.23
21 10 0.45
22 7 0.32
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTATTCTTTAATCTTATAATA
Found at i:7907779 original size:16 final size:16
Alignment explanation
Indices: 7907728--7907786 Score: 63
Period size: 16 Copynumber: 3.9 Consensus size: 16
7907718 TTAATCTTAT
7907728 AATATTTTAAAATTAA
1 AATATTTTAAAATTAA
* *
7907744 GATA----AAAATAAA
1 AATATTTTAAAATTAA
7907756 ATATATTTTAAAATTAA
1 A-ATATTTTAAAATTAA
7907773 AATATTTTAAAATT
1 AATATTTTAAAATT
7907787 TAAGATAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
12 7 0.21
13 3 0.09
16 16 0.47
17 8 0.24
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (16 bp):
AATATTTTAAAATTAA
Found at i:7907800 original size:23 final size:23
Alignment explanation
Indices: 7907728--7907800 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 23
7907718 TTAATCTTAT
7907728 AATATTTTAAAA-TTAAGATAAA
1 AATATTTTAAAATTTAAGATAAA
*** * * * *
7907750 AATAAAATATATTTTAAAATTAA
1 AATATTTTAAAATTTAAGATAAA
7907773 AATATTTTAAAATTTAAGATAAA
1 AATATTTTAAAATTTAAGATAAA
7907796 AATAT
1 AATAT
7907801 ATTTTATTCT
Statistics
Matches: 36, Mismatches: 14, Indels: 1
0.71 0.27 0.02
Matches are distributed among these distances:
22 7 0.19
23 29 0.81
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (23 bp):
AATATTTTAAAATTTAAGATAAA
Found at i:7907818 original size:41 final size:40
Alignment explanation
Indices: 7907716--7907839 Score: 149
Period size: 41 Copynumber: 3.0 Consensus size: 40
7907706 AATATTTATT
7907716 TTTTAATCTTATAATATTTTAAAATTAAGATAAAAATAAAATATA
1 TTTTAATCTTATAATATTTTAAAATTAAGAT----A-AAAATATA
** *
7907761 TTTTAAAATTAAAATATTTTAAAATTTAAGATAAAAATATA
1 TTTTAATCTTATAATATTTTAAAA-TTAAGATAAAAATATA
* *
7907802 TTTTATTCTTATAATATTTTAAAATTAAGATATAAATA
1 TTTTAATCTTATAATATTTTAAAATTAAGATAAAAATA
7907840 AAATATATAT
Statistics
Matches: 70, Mismatches: 8, Indels: 7
0.82 0.09 0.08
Matches are distributed among these distances:
40 13 0.19
41 28 0.40
42 1 0.01
45 21 0.30
46 7 0.10
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (40 bp):
TTTTAATCTTATAATATTTTAAAATTAAGATAAAAATATA
Found at i:7908169 original size:19 final size:19
Alignment explanation
Indices: 7908145--7908187 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
7908135 TGCTGATTTG
7908145 GCGCCACGTGGAGTATAAC
1 GCGCCACGTGGAGTATAAC
*
7908164 GCGCCACGTGGAGTATAGC
1 GCGCCACGTGGAGTATAAC
7908183 GCGCC
1 GCGCC
7908188 CCCTGTACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.21, C:0.30, G:0.35, T:0.14
Consensus pattern (19 bp):
GCGCCACGTGGAGTATAAC
Found at i:7908655 original size:3 final size:3
Alignment explanation
Indices: 7908647--7908695 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
7908637 CGGGAGCATA
** * * *
7908647 CGT CGT CGT CGT CGT CAC CAT CGT CAT CGT CGT CAT CGT CGT CGT CGT
1 CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT
7908695 C
1 C
7908696 ATCTTGAGCA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.08, C:0.37, G:0.24, T:0.31
Consensus pattern (3 bp):
CGT
Found at i:7908661 original size:9 final size:9
Alignment explanation
Indices: 7908647--7908695 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
7908637 CGGGAGCATA
*
7908647 CGTCGTCGT
1 CGTCGTCAT
*
7908656 CGTCGTCAC
1 CGTCGTCAT
*
7908665 CATCGTCAT
1 CGTCGTCAT
7908674 CGTCGTCAT
1 CGTCGTCAT
*
7908683 CGTCGTCGT
1 CGTCGTCAT
7908692 CGTC
1 CGTC
7908696 ATCTTGAGCA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.08, C:0.37, G:0.24, T:0.31
Consensus pattern (9 bp):
CGTCGTCAT
Found at i:7909054 original size:18 final size:18
Alignment explanation
Indices: 7909031--7909066 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7909021 GCGATGGCGT
*
7909031 CATCATATATGGTTGCGG
1 CATCATATATGGCTGCGG
7909049 CATCATATATGGCTGCGG
1 CATCATATATGGCTGCGG
7909067 TGGCTGCTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (18 bp):
CATCATATATGGCTGCGG
Found at i:7910702 original size:111 final size:111
Alignment explanation
Indices: 7910562--7910894 Score: 603
Period size: 111 Copynumber: 3.0 Consensus size: 111
7910552 ATTACAAAAA
7910562 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
*
7910627 AATTAAAACATTAAAATATTACCGTATCAGCAAAGTGTCGAGATAT
66 AATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTCGAGATAT
* *
7910673 TTAATTCTTAATTTAATAATCATGTATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
* *
7910738 AATTAAAACGTTAAAATGTTACCGTATCAGCAAAATGTCGAGATAT
66 AATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTCGAGATAT
*
7910784 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAAATATTACTAATAATTTAAATTA
1 TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
*
7910849 AATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTAGAGATAT
66 AATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTCGAGATAT
7910895 ATGATTTCCA
Statistics
Matches: 211, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
111 211 1.00
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.36
Consensus pattern (111 bp):
TTAATTCTTAATCTAATAATCATGCATTAAATAAATCAACTAATTATTACTAATAATTTAAATTA
AATTAAAACGTTAAAATATTACCGTATCAGCAAAGTGTCGAGATAT
Found at i:7910999 original size:17 final size:18
Alignment explanation
Indices: 7910956--7910996 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
7910946 TAATTATATT
7910956 AGTAAAATA-TTAAATAA
1 AGTAAAATACTTAAATAA
7910973 AGTAAAATACTTAAATAA
1 AGTAAAATACTTAAATAA
*
7910991 ATTAAA
1 AGTAAA
7910997 TACATAATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.29
Consensus pattern (18 bp):
AGTAAAATACTTAAATAA
Found at i:7911050 original size:12 final size:10
Alignment explanation
Indices: 7911036--7911076 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
7911026 ACCTTAAAAA
*
7911036 GAGAGTATTT
1 GAGAGAATTT
7911046 GAGAGAAATTT
1 GAGAG-AATTT
7911057 -AGAGAATTT
1 GAGAGAATTT
7911066 GAGAGAATTT
1 GAGAGAATTT
7911076 G
1 G
7911077 GTGTGATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 5 0.18
10 19 0.68
11 4 0.14
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32
Consensus pattern (10 bp):
GAGAGAATTT
Found at i:7911257 original size:40 final size:42
Alignment explanation
Indices: 7911199--7911314 Score: 155
Period size: 42 Copynumber: 2.8 Consensus size: 42
7911189 AGATACCCAT
* * *
7911199 GTATAGCGCGGATCA-GGGG-GCGTTATACCCACGTGTCACC
1 GTATATCGCGGATCAGGGGGTGCGCTATACCCACATGTCACC
*
7911239 GTATATCGCGGATTAGGGGGTGCGCTATACCCACATGTCACC
1 GTATATCGCGGATCAGGGGGTGCGCTATACCCACATGTCACC
** *
7911281 GTATATCGCGGGGCAGGGGGCGCGCTATACCCAC
1 GTATATCGCGGATCAGGGGGTGCGCTATACCCAC
7911315 GTGGCGCCAA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
40 13 0.20
41 4 0.06
42 49 0.74
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.20
Consensus pattern (42 bp):
GTATATCGCGGATCAGGGGGTGCGCTATACCCACATGTCACC
Found at i:7911410 original size:29 final size:29
Alignment explanation
Indices: 7911368--7911445 Score: 140
Period size: 29 Copynumber: 2.7 Consensus size: 29
7911358 ACTGCTACAG
7911368 GTGTTAGATCGTGAAATATAATCTGACCA
1 GTGTTAGATCGTGAAATATAATCTGACCA
7911397 GTGTTAGATCGTGAAATATAATCTGACCA
1 GTGTTAGATCGTGAAATATAATCTGACCA
7911426 GTGTTAGATCG-GTAAATATA
1 GTGTTAGATCGTG-AAATATA
7911446 CCGATCACCG
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
28 1 0.02
29 47 0.98
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.32
Consensus pattern (29 bp):
GTGTTAGATCGTGAAATATAATCTGACCA
Found at i:7912105 original size:90 final size:89
Alignment explanation
Indices: 7911973--7912150 Score: 275
Period size: 90 Copynumber: 2.0 Consensus size: 89
7911963 TGAAAATTTT
*
7911973 TGATAAATGCATATGTTTTTTTTCTCGACAAAAGAAGATTTTATTAATATAGAAGGTTAAGAATT
1 TGATAAATGCATATGTTTTTTTTCTCGACAAAAGAAGATTTTATTAATATAGAAGGATAAGAATT
**
7912038 AAAATGTATGTCTTATTAAAAACC
66 AAAATGTATACCTTATTAAAAACC
* * * *
7912062 TGATAAATGCATATGTTTTTTTTTTCAGGCAAAAGAAGATTTTATTAATATCGAAGGATCAGAAT
1 TGATAAATGCATATGTTTTTTTTCTC-GACAAAAGAAGATTTTATTAATATAGAAGGATAAGAAT
*
7912127 TAAAATGTATACCTTGTTAAAAAC
65 TAAAATGTATACCTTATTAAAAAC
7912151 ACCTCTAGTT
Statistics
Matches: 80, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
89 25 0.31
90 55 0.69
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.38
Consensus pattern (89 bp):
TGATAAATGCATATGTTTTTTTTCTCGACAAAAGAAGATTTTATTAATATAGAAGGATAAGAATT
AAAATGTATACCTTATTAAAAACC
Found at i:7914475 original size:60 final size:60
Alignment explanation
Indices: 7914367--7914484 Score: 139
Period size: 60 Copynumber: 2.0 Consensus size: 60
7914357 TCGGGTGACC
* * ** *
7914367 ATTTTATAACTTTTAATTGTCAAAGGACTTAACAAAGCAACATTCTATAGTTGGAGGATA
1 ATTTTATAACTTTTAATAGTCAAAGAACTTAACAAAGCAACACCCTATAGTCGGAGGATA
* * **
7914427 ATTTTGTAACTTTTAATAGTC-AAGAAACTTAATAAAGCAGTACCCTATAGTCGGAGGA
1 ATTTTATAACTTTTAATAGTCAAAG-AACTTAACAAAGCAACACCCTATAGTCGGAGGA
7914485 CCATTTGTGT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
59 3 0.06
60 45 0.94
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (60 bp):
ATTTTATAACTTTTAATAGTCAAAGAACTTAACAAAGCAACACCCTATAGTCGGAGGATA
Found at i:7915107 original size:31 final size:32
Alignment explanation
Indices: 7915056--7915119 Score: 103
Period size: 31 Copynumber: 2.0 Consensus size: 32
7915046 GGAGAAGAGA
*
7915056 AGGAAAACTGGTAAACTACACCATGAGTCATT
1 AGGAAAACGGGTAAACTACACCATGAGTCATT
*
7915088 AGGAAAA-GGGTAAATTACACCATGAGTCATT
1 AGGAAAACGGGTAAACTACACCATGAGTCATT
7915119 A
1 A
7915120 AACTTTACTC
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 23 0.77
32 7 0.23
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (32 bp):
AGGAAAACGGGTAAACTACACCATGAGTCATT
Found at i:7918679 original size:31 final size:31
Alignment explanation
Indices: 7918641--7918702 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
7918631 TCAATGAGTC
7918641 ACTTGTCTTGAAGTACTTGATCTATTTCTTT
1 ACTTGTCTTGAAGTACTTGATCTATTTCTTT
7918672 ACTTGTCTTGAAGTACTTGATCTATTTCTTT
1 ACTTGTCTTGAAGTACTTGATCTATTTCTTT
7918703 TTCTTTTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.19, C:0.16, G:0.13, T:0.52
Consensus pattern (31 bp):
ACTTGTCTTGAAGTACTTGATCTATTTCTTT
Found at i:7918735 original size:11 final size:11
Alignment explanation
Indices: 7918706--7918735 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7918696 TTTCTTTTTC
7918706 TTTTTTATTAT
1 TTTTTTATTAT
*
7918717 TTTATTATTAT
1 TTTTTTATTAT
7918728 TTTTTTAT
1 TTTTTTAT
7918736 CGTTTATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTTTATTAT
Found at i:7919429 original size:20 final size:20
Alignment explanation
Indices: 7919404--7919443 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7919394 CTACCTGAGA
7919404 AGGTAAAGGTATGAATTTGG
1 AGGTAAAGGTATGAATTTGG
* *
7919424 AGGTAAGGGTATGACTTTGG
1 AGGTAAAGGTATGAATTTGG
7919444 GGTCTCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.03, G:0.38, T:0.30
Consensus pattern (20 bp):
AGGTAAAGGTATGAATTTGG
Found at i:7921704 original size:17 final size:18
Alignment explanation
Indices: 7921682--7921722 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7921672 CATATTTTTC
* *
7921682 ATTTTAA-TAAAATATTA
1 ATTTTAATTAAAACAATA
7921699 ATTTTAATTAAAACAATA
1 ATTTTAATTAAAACAATA
7921717 ATTTTA
1 ATTTTA
7921723 TGGTCTATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTTTAATTAAAACAATA
Found at i:7922176 original size:50 final size:51
Alignment explanation
Indices: 7922087--7922333 Score: 300
Period size: 50 Copynumber: 4.8 Consensus size: 51
7922077 TCATACTACA
* * * *
7922087 AAAAAAATGTAGCACTTAACACATACTTACTCCAATGTAAGTGAATAAAAT
1 AAAAAAGTATAGCACTTAACACATACTTACACCAGTGTAAGTGAATAAAAT
* * *
7922138 AAACAAGTATAGCACTTAA-ACATACTTACACTAGTGTAAGTGAATAAAAC
1 AAAAAAGTATAGCACTTAACACATACTTACACCAGTGTAAGTGAATAAAAT
* * *
7922188 AAAAAAGTGTAGCACTTAATACATAC-TACACCAGTGTAATTGAATAAAAT
1 AAAAAAGTATAGCACTTAACACATACTTACACCAGTGTAAGTGAATAAAAT
* * * *
7922238 AAAAAAGTGTAGCACTTAACACATACTTACAACGGTGTAAGTAAATAAAAT
1 AAAAAAGTATAGCACTTAACACATACTTACACCAGTGTAAGTGAATAAAAT
* * *
7922289 AAAATAAAAATATATCACTTAACACATACTTACACCAATGTAAGT
1 --AA-AAAAGTATAGCACTTAACACATACTTACACCAGTGTAAGT
7922334 ATGTACATCT
Statistics
Matches: 168, Mismatches: 23, Indels: 7
0.85 0.12 0.04
Matches are distributed among these distances:
50 90 0.54
51 42 0.25
53 2 0.01
54 34 0.20
ACGTcount: A:0.49, C:0.15, G:0.11, T:0.25
Consensus pattern (51 bp):
AAAAAAGTATAGCACTTAACACATACTTACACCAGTGTAAGTGAATAAAAT
Found at i:7922203 original size:101 final size:104
Alignment explanation
Indices: 7922086--7922333 Score: 335
Period size: 101 Copynumber: 2.4 Consensus size: 104
7922076 TTCATACTAC
* *
7922086 AAAAAAAATGTAGCACTTAACACATACTTACTCCAATGTAAGTGAATAAAATAAACAAGTATAGC
1 AAAAAAAATGTAGCACTTAACACATACTTACACCAATGTAAGTGAATAAAATAAAAAAGTATAGC
*
7922151 ACTTAA-ACATACTTAC-ACTAGTGTAAGTGAAT-AAA-A
66 ACTTAACACATACTTACAAC-AGTGTAAGTAAATAAAATA
* * * * * *
7922187 CAAAAAAGTGTAGCACTTAATACATAC-TACACCAGTGTAATTGAATAAAATAAAAAAGTGTAGC
1 AAAAAAAATGTAGCACTTAACACATACTTACACCAATGTAAGTGAATAAAATAAAAAAGTATAGC
*
7922251 ACTTAACACATACTTACAACGGTGTAAGTAAATAAAATA
66 ACTTAACACATACTTACAACAGTGTAAGTAAATAAAATA
* *
7922290 AAATAAAAATATATCACTTAACACATACTTACACCAATGTAAGT
1 AAA-AAAAATGTAGCACTTAACACATACTTACACCAATGTAAGT
7922334 ATGTACATCT
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
100 38 0.31
101 45 0.36
102 5 0.04
103 3 0.02
104 20 0.16
105 13 0.10
ACGTcount: A:0.49, C:0.15, G:0.10, T:0.25
Consensus pattern (104 bp):
AAAAAAAATGTAGCACTTAACACATACTTACACCAATGTAAGTGAATAAAATAAAAAAGTATAGC
ACTTAACACATACTTACAACAGTGTAAGTAAATAAAATA
Found at i:7925884 original size:653 final size:652
Alignment explanation
Indices: 7924639--7925943 Score: 2531
Period size: 653 Copynumber: 2.0 Consensus size: 652
7924629 ACCTCAAATG
7924639 TTCTTGGATTTTAGGGATTCGATTTATTTTTTATATTGGGTTTGATAGATTTGTCACTTTTGATG
1 TTCTTGGATTTTAGGGATTCGATTTATTTTTTATATTGGGTTTGATAGATTTGTCACTTTTGATG
7924704 ATGATTTTCTATGATTTTTCTTATTTTTCTTGAATATGTTGAATTAGCTGAAACAGAGGTAAAAA
66 ATGATTTTCTATGATTTTTCTTATTTTTCTTGAATATGTTGAATTAGCTGAAACAGAGGTAAAAA
*
7924769 TTTGAGGACTATAAAGATAATTTTACCCTTTGTTGGATAAATTTGAGTTTAAACCCCCACTTACC
131 TTTGAGGACTATAAAGATAATTTTACCCTTTATTGGATAAATTTGAGTTTAAACCCCCACTTACC
7924834 TGGAGCATTCTATTTTTAGAAACCCATAGCTTTCATCTCTTTATGTTTTTCTCTTTCTTTTTAAG
196 TGGAGCATTCTATTTTTAGAAACCCATAGCTTTCATCTCTTTATGTTTTTCTCTTTCTTTTTAAG
7924899 TTTTTCTTTCCAAGATGTTTCCATCGTCGTTTCGATGTTGTTGAGTGCTCCGTTCATCTCACCAT
261 TTTTTCTTTCCAAGATGTTTCCATCGTCGTTTCGATGTTGTTGAGTGCTCCGTTCATCTCACCAT
7924964 CGATATCATTGTGTTCATGGCATAGAGAGGAGTTGATCGGTGGTCGACTTGTCATTGGTAGCCTT
326 CGATATCATTGTGTTCATGGCATAGAGAGGAGTTGATCGGTGGTCGACTTGTCATTGGTAGCCTT
*
7925029 GGCGTGACAAGGGGTGAAGCGAAGAAAGTTTTGGTCGTGGCAAAAAGCTCTTCTCCATTGTTTTT
391 GGCGTGACAAGGGGTGAAGCGAAGAAAGTTTTGGTCGTGGCAAAAAGCTCTTCTCCATCGTTTTT
*
7925094 TTCGCAAAGTAACACCGATAAGCAATTCTCGTGCCCTTGAAACGCAAATCTAGAATTTTTTGTGG
456 TTCGCAAAGTAACACCGATAAGCAATTCTCGTGCCCTTGAAACGCAAATATAGAATTTTTTGTGG
7925159 TCGTCTGACCATCGTAGCCTGCCTCACACGCCCCATGTCTCCCCTCTTGTGCATGGATGTTGTTA
521 TCGTCTGACCATCGTAGCCTGCCTCACACGCCCCATGTCTCCCCTCTTGTGCATGGATGTTGTTA
7925224 TTCATTTGGGACTTTCTAGAACCGGTCCAGAACCGCTCAAGCCGCCTAAGTCAAACCGCTTGAGT
586 TTCATTTGGGACTTTCTAGAACCGGTCCAG-ACCGCTCAAGCCGCCTAAGTCAAACCGCTTGAGT
7925289 CAC
650 CAC
7925292 TTCTTGGATTTTAGGGATTCGATTTA-TTTTTATATTGGGTTTGATAGATTTGTCACTTTTGATG
1 TTCTTGGATTTTAGGGATTCGATTTATTTTTTATATTGGGTTTGATAGATTTGTCACTTTTGATG
7925356 ATGATTTTCTATGATTTTTCTTATTTTTCTTGAATATGTTGAATTAGCTGAAACAGAGGTAAAAA
66 ATGATTTTCTATGATTTTTCTTATTTTTCTTGAATATGTTGAATTAGCTGAAACAGAGGTAAAAA
7925421 TTTGAGGACTATAAAGATAATTTTACCCTTTATTGGATAAATTTGAGTTTAAACCCCCCACTTAC
131 TTTGAGGACTATAAAGATAATTTTACCCTTTATTGGATAAATTTGAGTTTAAA-CCCCCACTTAC
*
7925486 CTGGAGCATTCTATTTTTAGAAACCCATAGCTTTCATCTCTTTATGTTTTTCTCTTTTTTTTTAA
195 CTGGAGCATTCTATTTTTAGAAACCCATAGCTTTCATCTCTTTATGTTTTTCTCTTTCTTTTTAA
7925551 GTTTTTCTTTCCAAGATGTTTCCATCGTCGTTTCGATGTTGTTGAGTGCTCCGTTCATCTCACCA
260 GTTTTTCTTTCCAAGATGTTTCCATCGTCGTTTCGATGTTGTTGAGTGCTCCGTTCATCTCACCA
*
7925616 TCGATATCATTGTGTTCATGGCATAGAGAGGAGTTGATCGGTGGTCGACTTGTCATTGGTAGGCT
325 TCGATATCATTGTGTTCATGGCATAGAGAGGAGTTGATCGGTGGTCGACTTGTCATTGGTAGCCT
7925681 TGGCGTGACAAGGGGTGAAGCGAAGAAAGTTTTGGTCGTGGCAAAAAGCTCTTCTCCATCGTTTT
390 TGGCGTGACAAGGGGTGAAGCGAAGAAAGTTTTGGTCGTGGCAAAAAGCTCTTCTCCATCGTTTT
*
7925746 TTTCGCAAAGTAACACCGATAAGCAATTCTCGTGCCCTTGAAACGCAAATATATAATTTTTTGTG
455 TTTCGCAAAGTAACACCGATAAGCAATTCTCGTGCCCTTGAAACGCAAATATAGAATTTTTTGTG
7925811 GTCGTCTGACCATCGTAGCCTGCCTCACACGCCCCATGTCTCCCCTCTTGTGCATGGATGTTGTT
520 GTCGTCTGACCATCGTAGCCTGCCTCACACGCCCCATGTCTCCCCTCTTGTGCATGGATGTTGTT
7925876 ATTCATTTGGGACTTTCTAGAACCGGTCCAGACCGCTCAAGCCGCCTAAGTCAAACCGCTTGAGT
585 ATTCATTTGGGACTTTCTAGAACCGGTCCAGACCGCTCAAGCCGCCTAAGTCAAACCGCTTGAGT
7925941 CAC
650 CAC
7925944 CTAAGCCAAA
Statistics
Matches: 645, Mismatches: 6, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
652 192 0.30
653 453 0.70
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (652 bp):
TTCTTGGATTTTAGGGATTCGATTTATTTTTTATATTGGGTTTGATAGATTTGTCACTTTTGATG
ATGATTTTCTATGATTTTTCTTATTTTTCTTGAATATGTTGAATTAGCTGAAACAGAGGTAAAAA
TTTGAGGACTATAAAGATAATTTTACCCTTTATTGGATAAATTTGAGTTTAAACCCCCACTTACC
TGGAGCATTCTATTTTTAGAAACCCATAGCTTTCATCTCTTTATGTTTTTCTCTTTCTTTTTAAG
TTTTTCTTTCCAAGATGTTTCCATCGTCGTTTCGATGTTGTTGAGTGCTCCGTTCATCTCACCAT
CGATATCATTGTGTTCATGGCATAGAGAGGAGTTGATCGGTGGTCGACTTGTCATTGGTAGCCTT
GGCGTGACAAGGGGTGAAGCGAAGAAAGTTTTGGTCGTGGCAAAAAGCTCTTCTCCATCGTTTTT
TTCGCAAAGTAACACCGATAAGCAATTCTCGTGCCCTTGAAACGCAAATATAGAATTTTTTGTGG
TCGTCTGACCATCGTAGCCTGCCTCACACGCCCCATGTCTCCCCTCTTGTGCATGGATGTTGTTA
TTCATTTGGGACTTTCTAGAACCGGTCCAGACCGCTCAAGCCGCCTAAGTCAAACCGCTTGAGTC
AC
Found at i:7927917 original size:32 final size:32
Alignment explanation
Indices: 7927861--7927929 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 32
7927851 CCTAAGGTAA
* * * *
7927861 CCCTTGGGTAGCCTCTTAGGCCCCAAGATACT
1 CCCTTGAGTAGCCTCTAAGACCCCAAGACACT
* *
7927893 CCCTTGAGTAGGCTCTAAGACCCCAAGGCACT
1 CCCTTGAGTAGCCTCTAAGACCCCAAGACACT
7927925 CCCTT
1 CCCTT
7927930 AGGTTGACTC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.20, C:0.36, G:0.20, T:0.23
Consensus pattern (32 bp):
CCCTTGAGTAGCCTCTAAGACCCCAAGACACT
Found at i:7928214 original size:32 final size:32
Alignment explanation
Indices: 7928173--7928234 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
7928163 ACCTAAGTGA
*
7928173 CCCTTGGGTAGGCTCTTAGGCCCCAATGTACT
1 CCCTTGGGTAGGCTCTGAGGCCCCAATGTACT
* *
7928205 CCCTTGGGTAGTCTCTGAGGTCCCAATGTA
1 CCCTTGGGTAGGCTCTGAGGCCCCAATGTA
7928235 TTCGTTTAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.16, C:0.29, G:0.26, T:0.29
Consensus pattern (32 bp):
CCCTTGGGTAGGCTCTGAGGCCCCAATGTACT
Found at i:7929210 original size:25 final size:25
Alignment explanation
Indices: 7929181--7929236 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
7929171 GGGTCTTGAA
7929181 TGTAACTTGTAATTGGGCCAATTCT
1 TGTAACTTGTAATTGGGCCAATTCT
7929206 TGTAACTTGTAATTGGGCCAATTCT
1 TGTAACTTGTAATTGGGCCAATTCT
7929231 TGTAAC
1 TGTAAC
7929237 ATGGACCTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (25 bp):
TGTAACTTGTAATTGGGCCAATTCT
Found at i:7932609 original size:27 final size:26
Alignment explanation
Indices: 7932558--7932610 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
7932548 ATTTAAGGTT
* *
7932558 GGGTTGTAATTTAGGTTTTTTATTTA
1 GGGTTGTAATTTAGGTTTGTGATTTA
7932584 GGGTT-TAGATTTAAGGTTTGTGATTTA
1 GGGTTGTA-ATTT-AGGTTTGTGATTTA
7932611 AATTTTGAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 2 0.09
26 9 0.39
27 12 0.52
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (26 bp):
GGGTTGTAATTTAGGTTTGTGATTTA
Found at i:7934924 original size:39 final size:39
Alignment explanation
Indices: 7934876--7935052 Score: 176
Period size: 39 Copynumber: 4.5 Consensus size: 39
7934866 CTTTTAAAGT
* *
7934876 ATGTTCGACATATATTCGAATCTTAAATCTATTTAATGC
1 ATGTCCGACATATATTCGAATCTTAAATCTATTTAACGC
* * * *
7934915 GTGTCCGACATATATTCGAATCTTAGATCTATCTGACGC
1 ATGTCCGACATATATTCGAATCTTAAATCTATTTAACGC
* * * * * *
7934954 GTGTCCGACAAATATTCGAATCTCAAATTTATTTAAGGT
1 ATGTCCGACATATATTCGAATCTTAAATCTATTTAACGC
* * * * *
7934993 ATGTTCGACAAATATTTGAAT-ATAAGATCTATTTAACGT
1 ATGTCCGACATATATTCGAATCTTAA-ATCTATTTAACGC
*
7935032 ATGTTCGACATATATTCGAAT
1 ATGTCCGACATATATTCGAAT
7935053 ATCGGATTTA
Statistics
Matches: 114, Mismatches: 23, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
38 2 0.02
39 112 0.98
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (39 bp):
ATGTCCGACATATATTCGAATCTTAAATCTATTTAACGC
Found at i:7935063 original size:78 final size:78
Alignment explanation
Indices: 7934868--7935052 Score: 217
Period size: 78 Copynumber: 2.4 Consensus size: 78
7934858 AATATTTACT
* * * * * *
7934868 TTTAAAGTATGTTCGACATATATTCGAATCTTAAATCTATTTAATGCGTGTCCGACATATATTCG
1 TTTAACGTATGTTCGACATATATTCGAATCTCAAATTTATTTAAGGCATGTCCGACAAATATTCG
* *
7934933 AATCTTAGATCTA
66 AATATAAGATCTA
* * ** * * * * *
7934946 TCTGACGCGTGTCCGACAAATATTCGAATCTCAAATTTATTTAAGGTATGTTCGACAAATATTTG
1 TTTAACGTATGTTCGACATATATTCGAATCTCAAATTTATTTAAGGCATGTCCGACAAATATTCG
7935011 AATATAAGATCTA
66 AATATAAGATCTA
7935024 TTTAACGTATGTTCGACATATATTCGAAT
1 TTTAACGTATGTTCGACATATATTCGAAT
7935053 ATCGGATTTA
Statistics
Matches: 84, Mismatches: 23, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
78 84 1.00
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (78 bp):
TTTAACGTATGTTCGACATATATTCGAATCTCAAATTTATTTAAGGCATGTCCGACAAATATTCG
AATATAAGATCTA
Found at i:7939181 original size:309 final size:302
Alignment explanation
Indices: 7938629--7939239 Score: 1150
Period size: 309 Copynumber: 2.0 Consensus size: 302
7938619 ATATATAATC
7938629 ATAAAACTAAATGTAAAAAGTTAAAAAATCTAGTTTAAAATATATAAAAATGTAATCTCATTTTA
1 ATAAAACTAAATGTAAAAAGTTAAAAAATCTAGTTTAAAATATATAAAAATGTAATCTCATTTTA
7938694 TTAAGAATATACATTTTTGATTTTATATAAATGTATAACTTGAGTTAATTATTTGGTTTGGCTTG
66 TTAAGAATATACATTTTTGATTTTATATAAATGTATAACTTGAGTTAATTATTTGGTTTGGCTTG
7938759 GTGTCTAATCAACTTGCACTTTCCTTGAGTTAGAATATGTTATATAAACAATGGTTTAAATACAT
131 GTGTCTAATCAACTTGCACTTTCCTTGAGTTAGAATATGTTATATAAACAATGGTTTAAATACAT
*
7938824 ACAAATTAAGAATGTTGGTTTAGTGGTTTCATGCATGAGCATTGTTCCCTTCAACTTGGGTTCAA
196 ACAAATTAAGAATGTTGGTTTAGTGGTTGCATGCATGAGCATTGTTCCCTTCAACTTGGGTTCAA
7938889 ATATTTAGCAGCATGCTCTTCTTTCTGTTATTTTATTTTATA
261 ATATTTAGCAGCATGCTCTTCTTTCTGTTATTTTATTTTATA
7938931 ATAAAACTAAATGTAAAAAGTTAAAAAATCTAGTTTAAAATATATAAAAATGTAATCTCATTTTT
1 ATAAAACTAAATGTAAAAAGTTAAAAAATCTAGTTTAAAATATATAAAAATGTAATCTCA-TTTT
7938996 ATTATAAGAATATACATTTTTGTGATTTTATATATAATGTATAAACTTGAGTTAATTATTTGGTT
65 A-T-TAAGAATATACA-TTTT-TGATTTTATATA-AATGTAT-AACTTGAGTTAATTATTTGGTT
7939061 TGGCTTGGTGTCTAATCAACTTGCACTTTCCTTGAGTTAGAATATGTTATATAAACAATGGTTTA
124 TGGCTTGGTGTCTAATCAACTTGCACTTTCCTTGAGTTAGAATATGTTATATAAACAATGGTTTA
7939126 AATACATACAAATTAAGAATGTTGGTTTAGTGGTTGCATGCATGAGCATTGTTCCCTTCAACTTG
189 AATACATACAAATTAAGAATGTTGGTTTAGTGGTTGCATGCATGAGCATTGTTCCCTTCAACTTG
7939191 GGTTCAAATATTTAGCAGCATGCTCTTCTTTCTGTTATTTTATTTTATA
254 GGTTCAAATATTTAGCAGCATGCTCTTCTTTCTGTTATTTTATTTTATA
7939240 CTCAATCAGA
Statistics
Matches: 301, Mismatches: 1, Indels: 7
0.97 0.00 0.02
Matches are distributed among these distances:
302 60 0.20
303 5 0.02
304 1 0.00
305 12 0.04
306 4 0.01
307 12 0.04
308 7 0.02
309 200 0.66
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (302 bp):
ATAAAACTAAATGTAAAAAGTTAAAAAATCTAGTTTAAAATATATAAAAATGTAATCTCATTTTA
TTAAGAATATACATTTTTGATTTTATATAAATGTATAACTTGAGTTAATTATTTGGTTTGGCTTG
GTGTCTAATCAACTTGCACTTTCCTTGAGTTAGAATATGTTATATAAACAATGGTTTAAATACAT
ACAAATTAAGAATGTTGGTTTAGTGGTTGCATGCATGAGCATTGTTCCCTTCAACTTGGGTTCAA
ATATTTAGCAGCATGCTCTTCTTTCTGTTATTTTATTTTATA
Found at i:7939930 original size:20 final size:19
Alignment explanation
Indices: 7939905--7939957 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
7939895 AACTTTAGGT
7939905 AAAGTTTTGAAACTATTGA
1 AAAGTTTTGAAACTATTGA
* * *
7939924 GATAGTTTCGAAACTCTTGA
1 -AAAGTTTTGAAACTATTGA
*
7939944 AAAGTATTGAAACT
1 AAAGTTTTGAAACT
7939958 TTTTGGGAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.40, C:0.09, G:0.17, T:0.34
Consensus pattern (19 bp):
AAAGTTTTGAAACTATTGA
Found at i:7939996 original size:19 final size:20
Alignment explanation
Indices: 7939972--7940009 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7939962 GGGAAAATGT
7939972 CTTGTA-AAGTTTCGAAACC
1 CTTGTAGAAGTTTCGAAACC
7939991 CTTGTAGAAGTTTCGAAAC
1 CTTGTAGAAGTTTCGAAAC
7940010 TTCTAGTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (20 bp):
CTTGTAGAAGTTTCGAAACC
Found at i:7944151 original size:3 final size:3
Alignment explanation
Indices: 7944143--7944173 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
7944133 ATTTTTAAAC
7944143 ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA
7944174 CCAACTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:7945427 original size:19 final size:20
Alignment explanation
Indices: 7945385--7945427 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
7945375 GATGATCAAC
* * *
7945385 ATAAAAAATCAATAATCTTC
1 ATAAAAAATAAATAATCATA
7945405 ATAAAAAATAAAT-ATCATA
1 ATAAAAAATAAATAATCATA
7945424 ATAA
1 ATAA
7945428 TTTTTCTGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.63, C:0.09, G:0.00, T:0.28
Consensus pattern (20 bp):
ATAAAAAATAAATAATCATA
Found at i:7946784 original size:18 final size:18
Alignment explanation
Indices: 7946761--7946797 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
7946751 TCCTCGATTC
7946761 ATTTCTATTATTCTATAT
1 ATTTCTATTATTCTATAT
7946779 ATTTCTATTATTCTATAT
1 ATTTCTATTATTCTATAT
7946797 A
1 A
7946798 CCAAGTAGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTCTATTATTCTATAT
Found at i:7947272 original size:68 final size:68
Alignment explanation
Indices: 7947163--7947299 Score: 256
Period size: 68 Copynumber: 2.0 Consensus size: 68
7947153 TATTAACTGT
* *
7947163 CATCAGGTAAGTGATTTAATGGAAGAACTTATGTTAGTGATCATACCTCAAGTGCATTCTGCACT
1 CATCAGGTAAGTGATTTAATGGAAGAACATATGTTAGTGATCATACCTCAAGTGCACTCTGCACT
7947228 GAA
66 GAA
7947231 CATCAGGTAAGTGATTTAATGGAAGAACATATGTTAGTGATCATACCTCAAGTGCACTCTGCACT
1 CATCAGGTAAGTGATTTAATGGAAGAACATATGTTAGTGATCATACCTCAAGTGCACTCTGCACT
7947296 GAA
66 GAA
7947299 C
1 C
7947300 TTGCATTCTC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 67 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (68 bp):
CATCAGGTAAGTGATTTAATGGAAGAACATATGTTAGTGATCATACCTCAAGTGCACTCTGCACT
GAA
Found at i:7950961 original size:30 final size:30
Alignment explanation
Indices: 7950921--7950984 Score: 110
Period size: 30 Copynumber: 2.1 Consensus size: 30
7950911 ATTTCAAAAC
*
7950921 CCATTGAATTTCTAAACCCAGAGATTAAAT
1 CCATTAAATTTCTAAACCCAGAGATTAAAT
*
7950951 CCATTAAATTTCTAAACCCAGAGATTGAAT
1 CCATTAAATTTCTAAACCCAGAGATTAAAT
7950981 CCAT
1 CCAT
7950985 AGCAAAAACG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (30 bp):
CCATTAAATTTCTAAACCCAGAGATTAAAT
Found at i:7951758 original size:64 final size:64
Alignment explanation
Indices: 7951685--7951818 Score: 259
Period size: 64 Copynumber: 2.1 Consensus size: 64
7951675 AAAAACTTAA
7951685 ATATAATAATACCAAAAATAAAAAATTATTATATTTTTAGCTAGAATTTAACTTAACTTTTATTT
1 ATAT-ATAATACCAAAAATAAAAAATTATTATATTTTTAGCTAGAATTTAACTTAACTTTTATTT
7951750 ATATATAATACCAAAAATAAAAAATTATTATATTTTTAGCTAGAATTTAACTTAACTTTTATTT
1 ATATATAATACCAAAAATAAAAAATTATTATATTTTTAGCTAGAATTTAACTTAACTTTTATTT
7951814 ATATA
1 ATATA
7951819 AATCTAAATA
Statistics
Matches: 69, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
64 65 0.94
65 4 0.06
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.43
Consensus pattern (64 bp):
ATATATAATACCAAAAATAAAAAATTATTATATTTTTAGCTAGAATTTAACTTAACTTTTATTT
Found at i:7952308 original size:23 final size:23
Alignment explanation
Indices: 7952279--7952333 Score: 110
Period size: 23 Copynumber: 2.4 Consensus size: 23
7952269 TAAAATAAAA
7952279 ACAATAAAATTTAGATAAAATTC
1 ACAATAAAATTTAGATAAAATTC
7952302 ACAATAAAATTTAGATAAAATTC
1 ACAATAAAATTTAGATAAAATTC
7952325 ACAATAAAA
1 ACAATAAAA
7952334 ATTCTCAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.60, C:0.09, G:0.04, T:0.27
Consensus pattern (23 bp):
ACAATAAAATTTAGATAAAATTC
Found at i:7952310 original size:12 final size:12
Alignment explanation
Indices: 7952279--7952347 Score: 61
Period size: 11 Copynumber: 5.8 Consensus size: 12
7952269 TAAAATAAAA
*
7952279 ACAATAAAATTT
1 ACAATAAAATTC
*
7952291 A-GATAAAATTC
1 ACAATAAAATTC
*
7952302 ACAATAAAATTT
1 ACAATAAAATTC
*
7952314 A-GATAAAATTC
1 ACAATAAAATTC
7952325 ACAATAAAAATTC
1 ACAAT-AAAATTC
* *
7952338 TCAACAAAAT
1 ACAATAAAAT
7952348 AATATATATA
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
11 18 0.40
12 17 0.38
13 10 0.22
ACGTcount: A:0.58, C:0.12, G:0.03, T:0.28
Consensus pattern (12 bp):
ACAATAAAATTC
Found at i:7952570 original size:21 final size:20
Alignment explanation
Indices: 7952546--7952604 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 20
7952536 CATCGATCAT
*
7952546 TATGAACTGTCACATCAATAC
1 TATGAA-TGTCACATCAACAC
7952567 TATGAATCGTCACATCAACAC
1 TATGAAT-GTCACATCAACAC
* *
7952588 TGTGAAGTGTTACATCA
1 TATGAA-TGTCACATCA
7952605 GTATCGTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 1 0.03
21 31 0.94
22 1 0.03
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.29
Consensus pattern (20 bp):
TATGAATGTCACATCAACAC
Found at i:7956528 original size:13 final size:13
Alignment explanation
Indices: 7956510--7956535 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7956500 AATTACTTTT
7956510 TGGTCAAAGTCAA
1 TGGTCAAAGTCAA
7956523 TGGTCAAAGTCAA
1 TGGTCAAAGTCAA
7956536 AGTTCACAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (13 bp):
TGGTCAAAGTCAA
Found at i:7958964 original size:45 final size:43
Alignment explanation
Indices: 7958900--7958986 Score: 156
Period size: 45 Copynumber: 2.0 Consensus size: 43
7958890 ATCGCTTTCT
7958900 TTTTATAGAAATAATAATTATTAGACTGCAAGGTCCTCACTCAAG
1 TTTTATAGAAATAATAATTATTAGACTGCAA-G-CCTCACTCAAG
7958945 TTTTATAGAAATAATAATTATTAGACTGCAAGCCTCACTCAA
1 TTTTATAGAAATAATAATTATTAGACTGCAAGCCTCACTCAA
7958987 AACTCCTTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
43 10 0.24
44 1 0.02
45 31 0.74
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.33
Consensus pattern (43 bp):
TTTTATAGAAATAATAATTATTAGACTGCAAGCCTCACTCAAG
Found at i:7965020 original size:2 final size:2
Alignment explanation
Indices: 7965013--7965037 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7965003 ACATACATAC
7965013 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7965038 GAGAGAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7965042 original size:2 final size:2
Alignment explanation
Indices: 7965037--7965063 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7965027 ATATATATAT
7965037 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
7965064 TTGGTCCCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7967801 original size:2 final size:2
Alignment explanation
Indices: 7967794--7967827 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7967784 ATTTTCAGTC
7967794 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7967828 GGTACAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7970063 original size:36 final size:36
Alignment explanation
Indices: 7970016--7970084 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
7970006 GATTGATGCA
* *
7970016 ATTAATAATAAGTTATGTTACTTGGTAAATAGACAT
1 ATTAATAATAAGTCATGTTACTTGATAAATAGACAT
*
7970052 ATTAATAATAAGTCATGTTAGTTGATAAATAGA
1 ATTAATAATAAGTCATGTTACTTGATAAATAGA
7970085 TTTGTGAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.43, C:0.04, G:0.14, T:0.38
Consensus pattern (36 bp):
ATTAATAATAAGTCATGTTACTTGATAAATAGACAT
Found at i:7970853 original size:29 final size:30
Alignment explanation
Indices: 7970803--7970872 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 30
7970793 AAATTTTGGC
* *
7970803 TAGTGACTAAAATGTAAGTTTT-AAAAGTT
1 TAGTGACTAAAATATAAATTTTGAAAAGTT
*
7970832 TAGTGACTAAAGTATAAATTTTGAAAAGTT
1 TAGTGACTAAAATATAAATTTTGAAAAGTT
*
7970862 TAG-GACCAAAA
1 TAGTGACTAAAA
7970873 ATTTAATTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 25 0.71
30 10 0.29
ACGTcount: A:0.44, C:0.06, G:0.17, T:0.33
Consensus pattern (30 bp):
TAGTGACTAAAATATAAATTTTGAAAAGTT
Found at i:7978228 original size:3 final size:3
Alignment explanation
Indices: 7978220--7978256 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
7978210 TTGAAAATTA
7978220 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7978257 GTAGTAGTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7981707 original size:6 final size:6
Alignment explanation
Indices: 7981696--7981725 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
7981686 GGAGGAAGAA
7981696 AGGGTG AGGGTG AGGGTG AGGGTG AGGGTG
1 AGGGTG AGGGTG AGGGTG AGGGTG AGGGTG
7981726 TGGGATATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.67, T:0.17
Consensus pattern (6 bp):
AGGGTG
Found at i:7990047 original size:21 final size:21
Alignment explanation
Indices: 7989990--7990048 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
7989980 TCGTCATGTT
*
7989990 TTTAA-TATATTATTATAATTA
1 TTTAATTATATT-TTATTATTA
* *
7990011 -TTAATAATAATATTATTATTA
1 TTTAATTAT-ATTTTATTATTA
7990032 TTTAATTATATTTTATT
1 TTTAATTATATTTTATT
7990049 TGCAGGCTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
20 4 0.13
21 17 0.57
22 9 0.30
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TTTAATTATATTTTATTATTA
Found at i:7991050 original size:23 final size:23
Alignment explanation
Indices: 7991008--7991051 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
7990998 CTCGTATAAA
* *
7991008 TGCACCTAAGTGCCATGTAGAAT
1 TGCACCGAAGTGCCACGTAGAAT
*
7991031 TGCACCGAAGTGCCGCGTAGA
1 TGCACCGAAGTGCCACGTAGA
7991052 CCCTCGACTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.27, C:0.25, G:0.27, T:0.20
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAT
Found at i:7995826 original size:81 final size:80
Alignment explanation
Indices: 7995714--7995953 Score: 311
Period size: 81 Copynumber: 3.0 Consensus size: 80
7995704 ATTTAGACTT
* * * * * * **
7995714 TTACCCAAAGGCATATAGCCTTTCATCTAACTTGCATGATTGACACTTTCCTGTCAAATGCACAG
1 TTACTCAAAGGTATTTAACCTTTCATTTAACTTGCATAATTGACACTTT-CTAACAAATGCACAG
*
7995779 TC-AGACCATTAATCTA
65 -CAAGGCCATTAATCTA
*
7995795 TTACTCAAAGGTATTTAACCTTTCATTTAACTTGCATAATTGACACATTTCTAACAAATACACAG
1 TTACTCAAAGGTATTTAACCTTTCATTTAACTTGCATAATTGACAC-TTTCTAACAAATGCACAG
* *
7995860 CTAGGCCATTAATCTT
65 CAAGGCCATTAATCTA
* *
7995876 TTACTCAAAGGTATTTAACCTTTCATTTAACTGGCATAATTGACACCTTTCTACCAAATGCACAG
1 TTACTCAAAGGTATTTAACCTTTCATTTAACTTGCATAATTGACA-CTTTCTAACAAATGCACAG
7995941 CAAGGCCATTAAT
65 CAAGGCCATTAAT
7995954 TTTTTTTATT
Statistics
Matches: 141, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
80 1 0.01
81 136 0.96
82 4 0.03
ACGTcount: A:0.33, C:0.23, G:0.11, T:0.33
Consensus pattern (80 bp):
TTACTCAAAGGTATTTAACCTTTCATTTAACTTGCATAATTGACACTTTCTAACAAATGCACAGC
AAGGCCATTAATCTA
Found at i:7996214 original size:55 final size:55
Alignment explanation
Indices: 7996108--7996379 Score: 449
Period size: 55 Copynumber: 4.9 Consensus size: 55
7996098 TCCACTACCG
* *
7996108 ATACGAAAATTCATAAACTTATTATGAA-TTCTTAGTTTTGCACACAAAGTGCCT
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
*
7996162 ATACAGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTG--CCC
* *
7996219 ATACGAAAATTCATAAACTTATTATGAA-TTCTCAGTTTTGCACACAAAGTGCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
*
7996273 ATACGGAAATTCATAAACTTATTATGATTTTCTTAGTTTTGCACACAAAGTGCCC
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
*
7996328 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACATAGTG
1 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTG
7996380 TCATTTGGTA
Statistics
Matches: 203, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
54 55 0.27
55 98 0.48
56 22 0.11
57 28 0.14
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (55 bp):
ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
Found at i:7996244 original size:111 final size:109
Alignment explanation
Indices: 7996108--7996379 Score: 463
Period size: 111 Copynumber: 2.5 Consensus size: 109
7996098 TCCACTACCG
*
7996108 ATACGAAAATTCATAAACTTATTATGAATTCTTAGTTTTGCACACAAAGTGCCTATACAGAAATT
1 ATACGAAAATTCATAAACTTATTATGAATTCTTAGTTTTGCACACAAAGTGCCCATACAGAAATT
7996173 CATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCCCC
66 CATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTG--CCC
* *
7996219 ATACGAAAATTCATAAACTTATTATGAATTCTCAGTTTTGCACACAAAGTGCCCATACGGAAATT
1 ATACGAAAATTCATAAACTTATTATGAATTCTTAGTTTTGCACACAAAGTGCCCATACAGAAATT
*
7996284 CATAAACTTATTATGATTTTCTTAGTTTTGCACACAAAGTGCCC
66 CATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
* *
7996328 ATACGGAAATTCATAAACTTATTATGAATTTCTTAGTTTTGCACACATAGTG
1 ATACGAAAATTCATAAACTTATTATGAA-TTCTTAGTTTTGCACACAAAGTG
7996380 TCATTTGGTA
Statistics
Matches: 153, Mismatches: 7, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
109 30 0.20
110 21 0.14
111 102 0.67
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (109 bp):
ATACGAAAATTCATAAACTTATTATGAATTCTTAGTTTTGCACACAAAGTGCCCATACAGAAATT
CATAAACTTATTATGAATTTCTTAGTTTTGCACACAAAGTGCCC
Found at i:7998572 original size:174 final size:170
Alignment explanation
Indices: 7998238--7998582 Score: 638
Period size: 174 Copynumber: 2.0 Consensus size: 170
7998228 AAATCATCTA
7998238 TCATTAAAGGATGATGTTATTATTAGAAGTTTTGAGTTCGAACACCATCAATTGCTACACGGATG
1 TCATTAAAGGATGATGTTATTATTAGAAGTTTTGAGTTCGAACACCATCAATTGCTACACGGATG
7998303 ATTACATTTGTTAAATGATTAAAAATATTTAAATAAATATTATTTTATAATTACTTTAACTTAAT
66 ATTACATTTGTTAAATGATTAAAAATATTTAAATAAATATTATTTTATAATTACTTTAACTTAAT
7998368 TCAAAAAAGAAATTACCTTACGGAGATGTTTGCAAAACTT
131 TCAAAAAAGAAATTACCTTACGGAGATGTTTGCAAAACTT
7998408 TCATTAAAGGAATGATGTTATTATTAGAAGTTTTGAGTTCGAACACCATCAATTGCTACACGGAT
1 TCATTAAAGG-ATGATGTTATTATTAGAAGTTTTGAGTTCGAACACCATCAATTGCTACACGGAT
7998473 GATTACACATTCATGTTAAATGATTAAAAATATTTAAAT-AATATTATTTTATAATTACTTTAAC
65 GATT--ACATT--TGTTAAATGATTAAAAATATTTAAATAAATATTATTTTATAATTACTTTAAC
7998537 TTAATTCAAAAAAGAAATTACCTTACGGAGATGTTTGCAAAACTT
126 TTAATTCAAAAAAGAAATTACCTTACGGAGATGTTTGCAAAACTT
7998582 T
1 T
7998583 TGTCACTTTT
Statistics
Matches: 170, Mismatches: 0, Indels: 6
0.97 0.00 0.03
Matches are distributed among these distances:
170 10 0.06
171 58 0.34
173 5 0.03
174 71 0.42
175 26 0.15
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.37
Consensus pattern (170 bp):
TCATTAAAGGATGATGTTATTATTAGAAGTTTTGAGTTCGAACACCATCAATTGCTACACGGATG
ATTACATTTGTTAAATGATTAAAAATATTTAAATAAATATTATTTTATAATTACTTTAACTTAAT
TCAAAAAAGAAATTACCTTACGGAGATGTTTGCAAAACTT
Found at i:7999482 original size:25 final size:24
Alignment explanation
Indices: 7999446--7999492 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
7999436 AATGTTAACA
7999446 TTTTTTAATTTAATATTTAAATAT
1 TTTTTTAATTTAATATTTAAATAT
*
7999470 TTTTTTATTTTTAATATTTAAAT
1 TTTTTTA-ATTTAATATTTAAAT
7999493 TTATATAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (24 bp):
TTTTTTAATTTAATATTTAAATAT
Found at i:7999804 original size:14 final size:14
Alignment explanation
Indices: 7999779--7999814 Score: 63
Period size: 14 Copynumber: 2.5 Consensus size: 14
7999769 CTTCTTGTGA
7999779 ACGTGAGGTAGTCTT
1 ACGTG-GGTAGTCTT
7999794 ACGTGGGTAGTCTT
1 ACGTGGGTAGTCTT
7999808 ACGTGGG
1 ACGTGGG
7999815 CAGTTTAGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.17, C:0.14, G:0.39, T:0.31
Consensus pattern (14 bp):
ACGTGGGTAGTCTT
Found at i:8000045 original size:14 final size:12
Alignment explanation
Indices: 8000018--8000042 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8000008 ATATTTATGA
8000018 TAAAATATTATT
1 TAAAATATTATT
8000030 TAAAATATTATT
1 TAAAATATTATT
8000042 T
1 T
8000043 TTATTAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TAAAATATTATT
Found at i:8000155 original size:79 final size:75
Alignment explanation
Indices: 8000003--8000161 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 75
7999993 GTTAATATTT
* * * * *
8000003 TTTTAATATTTATGATAAAATATTATTTAAAATATTATTTTTATTAAAAATATTAATATTGAACG
1 TTTTAATATTTATGATAAAATATAATTAAAAATATTATTTTTATCAAAAATATTAATATTAAACA
8000068 CTACTTAAAA
66 CTACTTAAAA
* *
8000078 TATTTAATATTTTTGATAAAATGTAACTTAAAATATTATTATTTTTATCAAAAATATTAATATTA
1 T-TTTAATATTTATGATAAAATATAA-TTAAAA-A-TATTATTTTTATCAAAAATATTAATATTA
* *
8000143 AATACTATTTAAAA
62 AACACTACTTAAAA
8000157 TTTTA
1 TTTTA
8000162 TTTTTTCTAT
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
75 1 0.01
76 21 0.30
77 5 0.07
78 5 0.07
79 39 0.55
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.48
Consensus pattern (75 bp):
TTTTAATATTTATGATAAAATATAATTAAAAATATTATTTTTATCAAAAATATTAATATTAAACA
CTACTTAAAA
Found at i:8006138 original size:29 final size:29
Alignment explanation
Indices: 8006084--8006162 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 29
8006074 GAACCAACAT
* *
8006084 AGGTCGCCATGCACGCCCGACGTCCTTAG
1 AGGTCGCCATGCACGCCCGGCATCCTTAG
* * *
8006113 AGGTCGTCATGCACGCCCGGTATCCTTAT
1 AGGTCGCCATGCACGCCCGGCATCCTTAG
* *
8006142 AGGTCACCATGCACACCCGGC
1 AGGTCGCCATGCACGCCCGGC
8006163 GTCTAACGTT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.19, C:0.37, G:0.25, T:0.19
Consensus pattern (29 bp):
AGGTCGCCATGCACGCCCGGCATCCTTAG
Found at i:8006349 original size:11 final size:11
Alignment explanation
Indices: 8006317--8006361 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
8006307 TGAATTCAGT
8006317 TGCATTATTGC
1 TGCATTATTGC
**
8006328 AACACTTATTGC
1 TGCA-TTATTGC
*
8006340 TGCATTATTGT
1 TGCATTATTGC
8006351 TGCATTATTGC
1 TGCATTATTGC
8006362 AGTCCTTCAG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.22, C:0.18, G:0.16, T:0.44
Consensus pattern (11 bp):
TGCATTATTGC
Found at i:8009524 original size:59 final size:59
Alignment explanation
Indices: 8009389--8009524 Score: 156
Period size: 59 Copynumber: 2.3 Consensus size: 59
8009379 AATATTTAGT
* *
8009389 AATTCGACTATTTTAAATCATTAGTATCAAATAATTAAATATTAATAATAAATCATTATT
1 AATTCGACTATTATAAATCATTAGTATCAAATAATTAAATATT-ATAATAAATCATTATA
* *
8009449 AA-T--AATAATTAGTAAATCATTAGTATCAAATTATTAAATATT-TAA-AAATCATTAATA
1 AATTCGACT-ATTA-TAAATCATTAGTATCAAATAATTAAATATTATAATAAATCATT-ATA
8009506 AATTCGACTATGTATAAAT
1 AATTCGACTAT-TATAAAT
8009525 TTAAACTCGA
Statistics
Matches: 64, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
56 8 0.12
57 9 0.14
58 4 0.06
59 37 0.58
60 6 0.09
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (59 bp):
AATTCGACTATTATAAATCATTAGTATCAAATAATTAAATATTATAATAAATCATTATA
Found at i:8009608 original size:14 final size:13
Alignment explanation
Indices: 8009589--8009944 Score: 82
Period size: 14 Copynumber: 26.9 Consensus size: 13
8009579 TAGTAATAAT
8009589 TATTAAATCATTA
1 TATTAAATCATTA
8009602 GTATTAAATCATTA
1 -TATTAAATCATTA
8009616 TTATTAAATCA-T-
1 -TATTAAATCATTA
* *
8009628 TACTAAATAATTA
1 TATTAAATCATTA
8009641 CTATTAAATCA-T-
1 -TATTAAATCATTA
* *
8009653 TATTATCATTATTA
1 TATTA-AATCATTA
*
8009667 TTATTAAATTA-T-
1 -TATTAAATCATTA
*
8009679 TATTAAATTA-T-
1 TATTAAATCATTA
8009690 TATT--ATCATTA
1 TATTAAATCATTA
8009701 TTATTAAATCA-T-
1 -TATTAAATCATTA
*
8009713 TATTATAATGATTA
1 TATTA-AATCATTA
*
8009727 TTACTAAATCA-T-
1 -TATTAAATCATTA
*
8009739 TATTATAATGATTA
1 TATTA-AATCATTA
*
8009753 TTATCAAATCATTA
1 -TATTAAATCATTA
8009767 CTAAATCATCAAATCATTAAA
1 -T--AT--T-AAATCATT--A
*
8009788 TATTTAA--ATTA
1 TATTAAATCATTA
8009799 TTATTAAATCA-T-
1 -TATTAAATCATTA
*
8009811 TATTATAATGATTA
1 TATTA-AATCATTA
*
8009825 TTATCAAATCATTA
1 -TATTAAATCATTA
*
8009839 CTA-T-AATGATTA
1 -TATTAAATCATTA
*
8009851 TTATCAAATCATTA
1 -TATTAAATCATTA
8009865 CTAAATCATCAAATCATTAAA
1 -T--AT--T-AAATCATT--A
8009886 TATTAAAT--TTA
1 TATTAAATCATTA
8009897 TTATTAAATTCA-T-
1 -TATTAAA-TCATTA
8009910 TATTAAATCATTA
1 TATTAAATCATTA
*
8009923 T-TTAAATTA-T-
1 TATTAAATCATTA
8009933 TATTAAATCATT
1 TATTAAATCATT
8009945 TTTATGGTTA
Statistics
Matches: 258, Mismatches: 33, Indels: 104
0.65 0.08 0.26
Matches are distributed among these distances:
9 3 0.01
10 2 0.01
11 55 0.21
12 58 0.22
13 17 0.07
14 70 0.27
15 23 0.09
16 6 0.02
18 4 0.02
19 16 0.06
20 2 0.01
21 2 0.01
ACGTcount: A:0.44, C:0.08, G:0.01, T:0.46
Consensus pattern (13 bp):
TATTAAATCATTA
Found at i:8009666 original size:3 final size:3
Alignment explanation
Indices: 8009651--8009756 Score: 67
Period size: 3 Copynumber: 36.7 Consensus size: 3
8009641 CTATTAAATC
* * * *
8009651 ATT ATT ATC ATT ATT ATT ATT A-A ATT ATT ATT A-A ATT ATT ATT ATC
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * *
8009697 ATT ATT ATT A-A ATC ATT ATT ATA ATG ATT ATT ACT A-A ATC ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
8009743 ATA ATG ATT ATT AT
1 ATT ATT ATT ATT AT
8009757 CAAATCATTA
Statistics
Matches: 78, Mismatches: 21, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
2 4 0.05
3 74 0.95
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.53
Consensus pattern (3 bp):
ATT
Found at i:8009673 original size:26 final size:25
Alignment explanation
Indices: 8009587--8009949 Score: 197
Period size: 26 Copynumber: 14.8 Consensus size: 25
8009577 ATTAGTAATA
* *
8009587 ATTATTAAATCATTAGTATTAAATCATT
1 ATTATTAAATCATTATTA-TCAA--ATT
* *
8009615 ATTATTAAATCATTACTA-AATAATT
1 ATTATTAAATCATTATTATCA-AATT
* *
8009640 ACTATTAAATCATTATTATCATTATT
1 ATTATTAAATCATTATTATCA-AATT
*
8009666 ATTATT-AA--ATTATTATTAAATT
1 ATTATTAAATCATTATTATCAAATT
* *
8009688 ATTATT--ATCATTATTATTAAATC
1 ATTATTAAATCATTATTATCAAATT
* *
8009711 ATTATTATAATGATTATTA-CTAAATC
1 ATTATTA-AATCATTATTATC-AAATT
* *
8009737 ATTATTATAATGATTATTATCAAATC
1 ATTATTA-AATCATTATTATCAAATT
* * *
8009763 ATTACTAAATCATCA-AATC--ATT
1 ATTATTAAATCATTATTATCAAATT
* * * *
8009785 AAATATTTAA--ATTATTATTAAATC
1 -ATTATTAAATCATTATTATCAAATT
* *
8009809 ATTATTATAATGATTATTATCAAATC
1 ATTATTA-AATCATTATTATCAAATT
* * *
8009835 ATTACTATAATGATTATTATCAAATC
1 ATTATTA-AATCATTATTATCAAATT
* * *
8009861 ATTACTAAATCATCA-AATC--ATT
1 ATTATTAAATCATTATTATCAAATT
* *
8009883 AAATATTAAAT--TTATTATTAAATT
1 -ATTATTAAATCATTATTATCAAATT
8009907 CATTATTAAATCATTATT-T-AAATT
1 -ATTATTAAATCATTATTATCAAATT
*
8009931 ATTATTAAATCATTTTTAT
1 ATTATTAAATCATTATTAT
8009950 GGTTAGTTGA
Statistics
Matches: 273, Mismatches: 39, Indels: 50
0.75 0.11 0.14
Matches are distributed among these distances:
21 6 0.02
22 17 0.06
23 63 0.23
24 28 0.10
25 34 0.12
26 106 0.39
27 2 0.01
28 17 0.06
ACGTcount: A:0.44, C:0.08, G:0.01, T:0.47
Consensus pattern (25 bp):
ATTATTAAATCATTATTATCAAATT
Found at i:8009726 original size:20 final size:22
Alignment explanation
Indices: 8009680--8009726 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
8009670 TTAAATTATT
* *
8009680 ATTAAATTATTATTATCATTATT
1 ATTAAATCATTATTATCA-TATG
8009703 ATTAAATCATTATTAT-A-ATG
1 ATTAAATCATTATTATCATATG
8009723 ATTA
1 ATTA
8009727 TTACTAAATC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 6 0.27
22 1 0.05
23 15 0.68
ACGTcount: A:0.43, C:0.04, G:0.02, T:0.51
Consensus pattern (22 bp):
ATTAAATCATTATTATCATATG
Found at i:8009801 original size:98 final size:96
Alignment explanation
Indices: 8009697--8009937 Score: 396
Period size: 98 Copynumber: 2.5 Consensus size: 96
8009687 TATTATTATC
8009697 ATTATTATTAAATCATTATTATAATGATTATTACTAAATCATTATTATAATGATTATTATCAAAT
1 ATTATTATTAAATCATTATTATAATGATTATTA-TAAATCATTATTATAATGATTATTATCAAAT
8009762 CATTACTAAATCATCAAATCATTAAATATTTAA
65 CATTACTAAATCATCAAATCATTAAATA-TTAA
*
8009795 ATTATTATTAAATCATTATTATAATGATTATTATCAAATCATTACTATAATGATTATTATCAAAT
1 ATTATTATTAAATCATTATTATAATGATTATTAT-AAATCATTATTATAATGATTATTATCAAAT
8009860 CATTACTAAATCATCAAATCATTAAATATTAA
65 CATTACTAAATCATCAAATCATTAAATATTAA
* *
8009892 ATTTATTATTAAATTCATTATTA-AATCATTATT-TAAATTATTATTA
1 A-TTATTATTAAA-TCATTATTATAATGATTATTATAAATCATTATTA
8009938 AATCATTTTT
Statistics
Matches: 136, Mismatches: 4, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
96 10 0.07
97 7 0.05
98 110 0.81
99 9 0.07
ACGTcount: A:0.44, C:0.09, G:0.02, T:0.45
Consensus pattern (96 bp):
ATTATTATTAAATCATTATTATAATGATTATTATAAATCATTATTATAATGATTATTATCAAATC
ATTACTAAATCATCAAATCATTAAATATTAA
Found at i:8009903 original size:12 final size:12
Alignment explanation
Indices: 8009886--8009944 Score: 79
Period size: 12 Copynumber: 5.1 Consensus size: 12
8009876 AATCATTAAA
*
8009886 TATTAAATTTAT
1 TATTAAATTCAT
8009898 TATTAAATTCAT
1 TATTAAATTCAT
8009910 TATTAAA-TCAT
1 TATTAAATTCAT
8009921 TATTTAAATT-AT
1 TA-TTAAATTCAT
8009933 TATTAAA-TCAT
1 TATTAAATTCAT
8009944 T
1 T
8009945 TTTATGGTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
10 1 0.02
11 14 0.33
12 27 0.63
13 1 0.02
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (12 bp):
TATTAAATTCAT
Found at i:8011086 original size:21 final size:21
Alignment explanation
Indices: 8011061--8011131 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
8011051 ACGCTGCAAT
8011061 CATGCAGCTATGGATGCAACG
1 CATGCAGCTATGGATGCAACG
* *
8011082 CATGCAGCTACGGATGC-AGG
1 CATGCAGCTATGGATGCAACG
* *
8011102 AATCTCCCAGCTATGGATGCAACG
1 CA--T-GCAGCTATGGATGCAACG
8011126 CATGCA
1 CATGCA
8011132 TGAGGGATAT
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
20 3 0.08
21 18 0.47
22 2 0.05
23 12 0.32
24 3 0.08
ACGTcount: A:0.28, C:0.27, G:0.27, T:0.18
Consensus pattern (21 bp):
CATGCAGCTATGGATGCAACG
Found at i:8011435 original size:29 final size:29
Alignment explanation
Indices: 8011401--8011527 Score: 146
Period size: 29 Copynumber: 4.4 Consensus size: 29
8011391 TACATGCATT
* *
8011401 CCTCCTTGGTCGCCCCGAGTGCATGGCAA
1 CCTCCTTGGTCGCCCGGAGTGCATGGCGA
*** *
8011430 CCTCCTTGGTCGTTGGGCGTGCATGGCGA
1 CCTCCTTGGTCGCCCGGAGTGCATGGCGA
*** * *
8011459 CCTCCTTGGTCGTTGGGCGTGTATGGCGA
1 CCTCCTTGGTCGCCCGGAGTGCATGGCGA
*
8011488 CCTCCTTGGTCGCCCAGAGTGCATGGCGA
1 CCTCCTTGGTCGCCCGGAGTGCATGGCGA
8011517 CCTCCTTGGTC
1 CCTCCTTGGTC
8011528 ACTGTAGAAT
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 85 1.00
ACGTcount: A:0.09, C:0.32, G:0.32, T:0.26
Consensus pattern (29 bp):
CCTCCTTGGTCGCCCGGAGTGCATGGCGA
Found at i:8012589 original size:2 final size:2
Alignment explanation
Indices: 8012582--8012615 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8012572 ATGCTTTCGA
8012582 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8012616 GCATGACATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8014080 original size:3 final size:3
Alignment explanation
Indices: 8014072--8014151 Score: 153
Period size: 3 Copynumber: 27.0 Consensus size: 3
8014062 GTCTCAACAC
8014072 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8014120 TAT TAT TAT TAT TAT TAT T-T TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8014152 AATTTGTTCA
Statistics
Matches: 76, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
2 2 0.03
3 74 0.97
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8017636 original size:3 final size:3
Alignment explanation
Indices: 8017628--8017654 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8017618 TTTCATTTTC
8017628 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
8017655 TTACTAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8021272 original size:15 final size:15
Alignment explanation
Indices: 8021252--8021281 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8021242 CTTTCATCGT
8021252 TGATTTTTGAAGCTC
1 TGATTTTTGAAGCTC
*
8021267 TGATTTTTGGAGCTC
1 TGATTTTTGAAGCTC
8021282 GCATCTCATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.13, G:0.23, T:0.47
Consensus pattern (15 bp):
TGATTTTTGAAGCTC
Found at i:8024616 original size:96 final size:94
Alignment explanation
Indices: 8024442--8024697 Score: 311
Period size: 96 Copynumber: 2.7 Consensus size: 94
8024432 AAATTTTAAT
* * * *
8024442 ATTATATATATACAATAAAGCTTGAATTGTCCCTCTA-AGGCAATTGTTTAAACGCCCCGACTTT
1 ATTATA-ATATACAATAAAG-TTGAGTTGTCCCTCTAGA-GCAATTGGTTAAACACCCCGGCTTT
* * *
8024506 ATGGATAGTATTCAGTTAGCCTGATAAAGGTG
63 ATGAATAATATTCAGCTAGCCTGATAAAGGTG
* * *
8024538 ATTATAATATACAATAAAGGTTGAGTTGTCCATCTAGAGTATTTGGTTAAACCACCCCGGCTTTA
1 ATTATAATATACAATAAA-GTTGAGTTGTCCCTCTAGAGCAATTGGTTAAA-CACCCCGGCTTTA
8024603 TGAATAATATTCAGCTAGCCTGATAAAGGTG
64 TGAATAATATTCAGCTAGCCTGATAAAGGTG
* * * *
8024634 ATTATAATAT-CTATACAA-TTAAGTTGTCCCTCTAGAGCAATTGGTTAAATACCCCAGCTTTAT
1 ATTATAATATACAATA-AAGTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACACCCCGGCTTTAT
8024697 G
65 G
8024698 GATTCAGCTA
Statistics
Matches: 139, Mismatches: 17, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
93 13 0.09
94 27 0.19
95 40 0.29
96 59 0.42
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Consensus pattern (94 bp):
ATTATAATATACAATAAAGTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACACCCCGGCTTTATG
AATAATATTCAGCTAGCCTGATAAAGGTG
Found at i:8025812 original size:36 final size:36
Alignment explanation
Indices: 8025740--8025915 Score: 210
Period size: 36 Copynumber: 4.9 Consensus size: 36
8025730 CAAAGGGTCA
* * *
8025740 TCTCGCTTGAGACTAATTT-ACTCAAAACAAAGTTTTG
1 TCTCTCTTGAGAC-AATTTCCCTTAAAACAAA-TTTTG
* *
8025777 TCTCTCTTAAGACAATTTCTCTTAAAACAAATTTTG
1 TCTCTCTTGAGACAATTTCCCTTAAAACAAATTTTG
* * *
8025813 TCTCTTTTGAGACAATTTCCCTTGAAATAAATTTTG
1 TCTCTCTTGAGACAATTTCCCTTAAAACAAATTTTG
* *
8025849 TCTCTCTTGAGACAGTTTCCCTTGAAACAAATTTTG
1 TCTCTCTTGAGACAATTTCCCTTAAAACAAATTTTG
* * *
8025885 TCTCTCTTGAGACAGTTTCCATTGAAACAAA
1 TCTCTCTTGAGACAATTTCCCTTAAAACAAA
8025916 ATCTTTGAAT
Statistics
Matches: 125, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
36 104 0.83
37 21 0.17
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (36 bp):
TCTCTCTTGAGACAATTTCCCTTAAAACAAATTTTG
Found at i:8026034 original size:42 final size:37
Alignment explanation
Indices: 8025974--8026089 Score: 153
Period size: 36 Copynumber: 3.0 Consensus size: 37
8025964 TGGAACTAAG
*
8025974 TTTTGTCTCTCTTGAGACAGTTTCTCTTTAAACAAATTTTA
1 TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAA----A
*
8026015 TATTTGTCTCTCTTGAGACAGTTTCTATTGAAAC-AAA
1 T-TTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAA
*
8026052 TTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAAA
1 TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAA
8026089 T
1 T
8026090 CTGTGAATAT
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
36 30 0.43
37 6 0.09
41 3 0.04
42 30 0.43
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (37 bp):
TTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAAA
Found at i:8026181 original size:21 final size:22
Alignment explanation
Indices: 8026144--8026190 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
8026134 ACAGATTCTT
*
8026144 TTGAAACTAAGTTTTGTCTCTC
1 TTGAAACTAAATTTTGTCTCTC
8026166 TTGAAAC-AAATTTTGTCTCTC
1 TTGAAACTAAATTTTGTCTCTC
8026187 TTGA
1 TTGA
8026191 GACAGTTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.45
Consensus pattern (22 bp):
TTGAAACTAAATTTTGTCTCTC
Found at i:8026188 original size:124 final size:125
Alignment explanation
Indices: 8026042--8026267 Score: 368
Period size: 125 Copynumber: 1.8 Consensus size: 125
8026032 ACAGTTTCTA
8026042 TTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACA-AAATCTGTGAATATGTTT-T
1 TTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATCTGTGAATATGTTTCT
*
8026105 CCTTGAAACA-AATTTTCGTCTCCCTTGAGACAGATTCTTTTGAAACTAAGTTTTGTCTCTC
66 -CTTGAAACACAATTTT-GCCTCCCTTGAGACAGATTCTTTTGAAACTAAGTTTTGTCTCTC
* * *
8026166 TTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACACCAATCTTTGAATATGTTTCT
1 TTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATCTGTGAATATGTTTCT
*
8026231 CTTGAAACACAATTTTGCCTCCCTTGAGACAGTTTCT
66 CTTGAAACACAATTTTGCCTCCCTTGAGACAGATTCT
8026268 CTTAAAACGC
Statistics
Matches: 94, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
124 43 0.46
125 44 0.47
126 7 0.07
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.39
Consensus pattern (125 bp):
TTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACACAAATCTGTGAATATGTTTCT
CTTGAAACACAATTTTGCCTCCCTTGAGACAGATTCTTTTGAAACTAAGTTTTGTCTCTC
Found at i:8026269 original size:67 final size:68
Alignment explanation
Indices: 8026162--8026307 Score: 197
Period size: 67 Copynumber: 2.1 Consensus size: 68
8026152 AAGTTTTGTC
* * * ** * *
8026162 TCTCTTGAAACAAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAA-C-ACCAATCTTTGAATAT
1 TCTCTTGAAACAAATTTTGCCTCCCTTGAGACAGTTTCTCTTAAAACCAAAAAAACTTTGAAAAT
8026225 GTT
66 GTT
8026228 TCTCTTGAAACACAATTTTGCCTCCCTTGAGACAGTTTCTCTTAAAACGCAAAAAAACTTTGAAA
1 TCTCTTGAAACA-AATTTTGCCTCCCTTGAGACAGTTTCTCTTAAAAC-CAAAAAAACTTTGAAA
8026293 ATGTT
64 ATGTT
8026298 TCTCTTGAAA
1 TCTCTTGAAA
8026308 TACCAAACCT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
66 12 0.17
67 31 0.45
69 1 0.01
70 25 0.36
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.37
Consensus pattern (68 bp):
TCTCTTGAAACAAATTTTGCCTCCCTTGAGACAGTTTCTCTTAAAACCAAAAAAACTTTGAAAAT
GTT
Found at i:8026472 original size:85 final size:84
Alignment explanation
Indices: 8026314--8026481 Score: 237
Period size: 85 Copynumber: 2.0 Consensus size: 84
8026304 GAAATACCAA
* * * * * *
8026314 ACCTTCGAGTTCGGTTACACTCAGCTCAAAGGCGCATCATTTGCAGCATAACTCAAGGCTAGAAT
1 ACCTTCGAGTTCGATTACACTCAGCTCAAAGACCCATCATTTACAGCATAACTCAAGGCAAGAAG
8026379 GGTTATCTGCCAACAAAAG
66 GGTTATCTGCCAACAAAAG
* *
8026398 ACCTTCGAGTTCGATTACACTCAGCTCAAAGACACCATCATTTACTGCATAGCTCAAGGCAAGAA
1 ACCTTCGAGTTCGATTACACTCAGCTCAAAGAC-CCATCATTTACAGCATAACTCAAGGCAAGAA
* *
8026463 GGGTTATCTGTCAGCAAAA
65 GGGTTATCTGCCAACAAAA
8026482 TTGTCGAGTT
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
84 31 0.42
85 42 0.58
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (84 bp):
ACCTTCGAGTTCGATTACACTCAGCTCAAAGACCCATCATTTACAGCATAACTCAAGGCAAGAAG
GGTTATCTGCCAACAAAAG
Found at i:8028575 original size:23 final size:25
Alignment explanation
Indices: 8028518--8028577 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 25
8028508 ATTTTTATTA
*
8028518 TTAATATTATTTTTACTAAATTTTAT
1 TTAATTTTATTTTTACT-AATTTTAT
*
8028544 TT-ATATTTATTTTT-CT-ATTTTCT
1 TTAAT-TTTATTTTTACTAATTTTAT
8028567 TTAATTTTATT
1 TTAATTTTATT
8028578 ATTATTATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
23 14 0.47
24 2 0.07
25 4 0.13
26 10 0.33
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (25 bp):
TTAATTTTATTTTTACTAATTTTAT
Found at i:8028706 original size:13 final size:13
Alignment explanation
Indices: 8028688--8028717 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8028678 ACGAATCGGT
8028688 TTTTAAATTTTAA
1 TTTTAAATTTTAA
*
8028701 TTTTAATTTTTAA
1 TTTTAAATTTTAA
8028714 TTTT
1 TTTT
8028718 TCGCAATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTAAATTTTAA
Found at i:8029690 original size:2 final size:2
Alignment explanation
Indices: 8029683--8029713 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8029673 AACCATTTCG
8029683 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8029714 GAAAATTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8030106 original size:16 final size:14
Alignment explanation
Indices: 8030062--8030120 Score: 59
Period size: 13 Copynumber: 4.4 Consensus size: 14
8030052 TATATTTTTT
*
8030062 AAAATAATT-TTGA
1 AAAATAATTATTAA
*
8030075 AAAATAGTTATTAA
1 AAAATAATTATTAA
* * *
8030089 ATAATTA-TGTTAA
1 AAAATAATTATTAA
8030102 AAAATAATTATTAA
1 AAAATAATTATTAA
8030116 AAAAT
1 AAAAT
8030121 TTATTACATA
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
13 18 0.51
14 17 0.49
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (14 bp):
AAAATAATTATTAA
Done.