Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8646418
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 43
Found at i:692109 original size:19 final size:19
Alignment explanation
Indices: 692087--692127 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
692077 GAAAGACTCC
692087 CAACGGCTAGAAACGACCA
1 CAACGGCTAGAAACGACCA
692106 CAACGGCTAGAAACGACCA
1 CAACGGCTAGAAACGACCA
692125 CAA
1 CAA
692128 ATTCATTCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.44, C:0.32, G:0.20, T:0.05
Consensus pattern (19 bp):
CAACGGCTAGAAACGACCA
Found at i:693147 original size:23 final size:24
Alignment explanation
Indices: 693106--693152 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
693096 TTACAAATAT
* *
693106 ATGAATTTTTTAAATATATTTTTA
1 ATGAATTTTATAAAAATATTTTTA
693130 ATGAA-TTTATAAAAATATTTTTA
1 ATGAATTTTATAAAAATATTTTTA
693153 TATTTTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 16 0.76
24 5 0.24
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (24 bp):
ATGAATTTTATAAAAATATTTTTA
Found at i:694660 original size:16 final size:16
Alignment explanation
Indices: 694593--694661 Score: 61
Period size: 16 Copynumber: 4.3 Consensus size: 16
694583 ACTATGATAA
*
694593 AAAAATCTAAGAAATT
1 AAAAATCTAAAAAATT
**
694609 AAAAATCTAAAAAGCT
1 AAAAATCTAAAAAATT
**
694625 -AAAATGGATAAAAA-T
1 AAAAATCTA-AAAAATT
694640 AAAAATCTAAAAAATTT
1 AAAAATCTAAAAAA-TT
694657 AAAAA
1 AAAAA
694662 AATAATGGAT
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
15 12 0.29
16 23 0.56
17 6 0.15
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.22
Consensus pattern (16 bp):
AAAAATCTAAAAAATT
Found at i:703557 original size:22 final size:22
Alignment explanation
Indices: 703530--703580 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
703520 TTTTTACTTA
703530 TATTTAAATGATTAAAAATGTT
1 TATTTAAATGATTAAAAATGTT
703552 TATTTAAATGATTAAAAATGTT
1 TATTTAAATGATTAAAAATGTT
703574 TATTTAA
1 TATTTAA
703581 TTCATGTCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (22 bp):
TATTTAAATGATTAAAAATGTT
Found at i:727465 original size:21 final size:21
Alignment explanation
Indices: 727436--727475 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
727426 TAGGAGGCAC
* *
727436 CTTTTTTCCCCTACCTTAGGA
1 CTTTATTCCACTACCTTAGGA
*
727457 CTTTATTCCACTTCCTTAG
1 CTTTATTCCACTACCTTAG
727476 ATAATCAAAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.33, G:0.07, T:0.45
Consensus pattern (21 bp):
CTTTATTCCACTACCTTAGGA
Found at i:732911 original size:22 final size:23
Alignment explanation
Indices: 732877--732925 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
732867 ATTTGAATTT
* *
732877 TATGCAGGTAGTATCAATACCCC
1 TATGAAGGTAGTATCAATACCCA
*
732900 TATGAAGG-AGTATCGATACCCA
1 TATGAAGGTAGTATCAATACCCA
732922 TATG
1 TATG
732926 CTCCCAATAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (23 bp):
TATGAAGGTAGTATCAATACCCA
Found at i:738891 original size:12 final size:12
Alignment explanation
Indices: 738864--738898 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
738854 ACATAATAAT
*
738864 TTTTCAAACTTAG
1 TTTTCAAA-ATAG
738877 TTTTCAAAATAG
1 TTTTCAAAATAG
738889 TTTTCAAAAT
1 TTTTCAAAAT
738899 TTTGCCCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 13 0.62
13 8 0.38
ACGTcount: A:0.37, C:0.11, G:0.06, T:0.46
Consensus pattern (12 bp):
TTTTCAAAATAG
Found at i:742678 original size:55 final size:55
Alignment explanation
Indices: 742601--743406 Score: 815
Period size: 55 Copynumber: 14.8 Consensus size: 55
742591 AAAACGTGTC
* * * * *** *
742601 CGCTCCTTCTTGGTTTATGGAGTA-AGGAACTCGAACAATCTTCTAAAAATGGGTT
1 CGCTCCCTCTTGCTTCAGGGAGTATA-GAACTCGAACAATCTTCTGCCAACGGGTT
* * * * * * * *
742656 TGCTCCCTCTTTCTTCCGGGAGTATAGAACTCGAACGATTTTCTACGAACGAGTT
1 CGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
* * ** * *** *
742711 CACTCCCTATTATTTTTAGGGAGTATAGAACTCGAACAATCTTCTATGAACGAGTT
1 CGCTCCCTCTT-GCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
* * * ***
742767 CACCCCCTATT-CTTTTCAGGGAGTATAGAACTCGAACAATCTTCTAAAAACGGGTT
1 CGCTCCCTCTTGC--TTCAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
* * * * * * * *
742823 CGCTCCCTCTTGCTTCAGGAAGTATGGAACTCGAATAATTTTCTACGAACCGATT
1 CGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
* ** ** *
742878 CTCTCTATTCTT--TTCAGGGAGTATAGAACTCGAACAATCTTCTGAAAATGGGTT
1 CGCTC-CCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
* * *
742932 CTCTCCCTATTGCTTAAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
1 CGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
* * *
742987 CGCTCCCTCTTACTTCAGGGAGTATAAAACTCGAACAATCTTCTGCCAATGGGTT
1 CGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
* * **
743042 CTCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAATCTTCTGCCAATAGGTT
1 CGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
* *
743097 CGCTCCCTTTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTACCAACGGGTT
1 CGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
* *
743152 TGCTCCATCTTGC-TCAGGGAGTATAGAACTC-AA-AATCTTCTGCCAACGGGTT
1 CGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
* * * ** * *
743204 CGCTCCCTCTTGCTTCA-GAAGTATGGAACTCG-A-AATCTTTTGAAAATGGGAT
1 CGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
* *
743256 CTCTCCCTATTGCTTCA-GGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
1 CGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
* * * * *
743310 CGCTCCTTCTTTCTTCAGGGAGTATAAAACTCGAAAAATCTTTTGCCAACGGGTT
1 CGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
* *
743365 CGCTCTCTCTTGCTTCAGGGAGTATAGAACTCGAAAAATCTT
1 CGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTT
743407 GATTTGCTTC
Statistics
Matches: 629, Mismatches: 109, Indels: 26
0.82 0.14 0.03
Matches are distributed among these distances:
52 84 0.13
53 9 0.01
54 82 0.13
55 354 0.56
56 99 0.16
57 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (55 bp):
CGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTT
Found at i:743063 original size:165 final size:165
Alignment explanation
Indices: 742619--743406 Score: 898
Period size: 165 Copynumber: 4.8 Consensus size: 165
742609 CTTGGTTTAT
** * * * *
742619 GGAGTA-AGGAACTCGAACAATCTTCTAAAAATGGGTTTGCTCCCTCTTTCTTCCGGGAGTATAG
1 GGAGTATA-GAACTCGAACAATCTTCTACCAACGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAG
* * * * * * * ** *
742683 AACTCGAACGATTTTCTACGAACGAGTTCACTCCCTATTATTTTTAGGGAGTATAGAACTCGAAC
65 AACTCGAACAATCTTCTGCCAACGGGTTCGCTCCCTCTT-GCTTCAGGGAGTATAGAACTCGAAC
* * * * *
742748 AATCTTCT-ATGAACGAGTTCACCCCCTATT-CTTTTCAG
129 AATCTTCTGA-AAATGGGTTCTCTCCCTATTGC--TTCAG
** * *
742786 GGAGTATAGAACTCGAACAATCTTCTAAAAACGGGTTCGCTCCCTCTTGCTTCAGGAAGTATGGA
1 GGAGTATAGAACTCGAACAATCTTCTACCAACGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGA
* * * * * * * **
742851 ACTCGAATAATTTTCTACGAACCGATTCTCTCTATTCTT--TTCAGGGAGTATAGAACTCGAACA
66 ACTCGAACAATCTTCTGCCAACGGGTTCGCTC-CCTCTTGCTTCAGGGAGTATAGAACTCGAACA
*
742914 ATCTTCTGAAAATGGGTTCTCTCCCTATTGCTTAAG
130 ATCTTCTGAAAATGGGTTCTCTCCCTATTGCTTCAG
* * *
742950 GGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTTCGCTCCCTCTTACTTCAGGGAGTATAAA
1 GGAGTATAGAACTCGAACAATCTTCTACCAACGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGA
* * *
743015 ACTCGAACAATCTTCTGCCAATGGGTTCTCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAATAA
66 ACTCGAACAATCTTCTGCCAACGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAA
** * * *
743080 TCTTCTGCCAATAGGTTCGCTCCCTTTTGCTTCAG
131 TCTTCTGAAAATGGGTTCTCTCCCTATTGCTTCAG
* *
743115 GGAGTATAGAACTCGAACAATCTTCTACCAACGGGTTTGCTCCATCTTGC-TCAGGGAGTATAGA
1 GGAGTATAGAACTCGAACAATCTTCTACCAACGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGA
* *
743179 ACTC-AA-AATCTTCTGCCAACGGGTTCGCTCCCTCTTGCTTCA-GAAGTATGGAACTCG-A-AA
66 ACTCGAACAATCTTCTGCCAACGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAA
* *
743239 TCTTTTGAAAATGGGATCTCTCCCTATTGCTTCA-
131 TCTTCTGAAAATGGGTTCTCTCCCTATTGCTTCAG
* * * *
743273 GGAGTATAGAACTCGAACAATCTTCTGCCAACGGGTTCGCTCCTTCTTTCTTCAGGGAGTATAAA
1 GGAGTATAGAACTCGAACAATCTTCTACCAACGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGA
* * * *
743338 ACTCGAAAAATCTTTTGCCAACGGGTTCGCTCTCTCTTGCTTCAGGGAGTATAGAACTCGAAAAA
66 ACTCGAACAATCTTCTGCCAACGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAA
743403 TCTT
131 TCTT
743407 GATTTGCTTC
Statistics
Matches: 539, Mismatches: 70, Indels: 27
0.85 0.11 0.04
Matches are distributed among these distances:
158 46 0.09
159 46 0.09
160 3 0.01
161 47 0.09
162 47 0.09
163 7 0.01
164 110 0.20
165 144 0.27
166 2 0.00
167 83 0.15
168 4 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (165 bp):
GGAGTATAGAACTCGAACAATCTTCTACCAACGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGA
ACTCGAACAATCTTCTGCCAACGGGTTCGCTCCCTCTTGCTTCAGGGAGTATAGAACTCGAACAA
TCTTCTGAAAATGGGTTCTCTCCCTATTGCTTCAG
Found at i:743485 original size:37 final size:36
Alignment explanation
Indices: 743405--743489 Score: 102
Period size: 37 Copynumber: 2.3 Consensus size: 36
743395 TCGAAAAATC
743405 TTGATTTGCTTCACTACTTTCTGTGAAGGCTTATAG
1 TTGATTTGCTTCACTACTTTCTGTGAAGGCTTATAG
* * *
743441 ATAATTTGCTTCATTACTCTT-TCGTGAAGGCTTA-AG
1 TTGATTTGCTTCACTACT-TTCT-GTGAAGGCTTATAG
743477 TTTGATTTGCTTC
1 -TTGATTTGCTTC
743490 GAAGGTTGAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
36 18 0.44
37 23 0.56
ACGTcount: A:0.20, C:0.16, G:0.18, T:0.46
Consensus pattern (36 bp):
TTGATTTGCTTCACTACTTTCTGTGAAGGCTTATAG
Found at i:750613 original size:22 final size:24
Alignment explanation
Indices: 750585--750629 Score: 67
Period size: 22 Copynumber: 1.9 Consensus size: 24
750575 TGTGTAAGAA
750585 AATAAAA-ATGCAT-TGAAAAAAT
1 AATAAAAGATGCATATGAAAAAAT
750607 AATAAAATGATGCATATGAAAAA
1 AATAAAA-GATGCATATGAAAAA
750630 TTCAGGGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
24 6 0.30
25 7 0.35
ACGTcount: A:0.62, C:0.04, G:0.11, T:0.22
Consensus pattern (24 bp):
AATAAAAGATGCATATGAAAAAAT
Found at i:751369 original size:151 final size:154
Alignment explanation
Indices: 751094--751399 Score: 539
Period size: 151 Copynumber: 2.0 Consensus size: 154
751084 TAATGCATCC
* *
751094 TCTAAACTCGAAATCTTCCCCTTCAGTTTCTCGCTCTGGGCTTGACCTTCTTGTAATTGTTGCTC
1 TCTAAACTCGAAATCTTCCCCTTCAGTTTCTCGCTCTGGGCTTGACCTTATTGTAATTGCTGCTC
751159 TAAACAACTCTTTTCCTTTGACAAAATCTTAATTTGATGCCTGCTTTGCTTGAGCTCTTCTTGAG
66 TAAACAACTCTTTTCCTTTGACAAAATCTTAATTTGATGCCTGCTTTGCTTGAGCTCTTCTTGAG
751224 TCT-CCA-CTTCTCTCTTTAAGCT
131 TCTCCCAGCTTCTCTCTTTAAGCT
751246 TCTAAACTCGAAATCTTCCCCTTCA-TTTCTCGCTCTGGGCTTGACCTTATTGTAATTTGCT-CT
1 TCTAAACTCGAAATCTTCCCCTTCAGTTTCTCGCTCTGGGCTTGACCTTATTGTAA-TTGCTGCT
*
751309 CTAAACAACTCTTTTCTTTTGACAAAATCTTAATTTGATGCCTGCTTTGCTTGAGCTCTTCTTGA
65 CTAAACAACTCTTTTCCTTTGACAAAATCTTAATTTGATGCCTGCTTTGCTTGAGCTCTTCTTGA
751374 GTCTCCCCAGCTTCTCTCTTTAAGCT
130 GTCT-CCCAGCTTCTCTCTTTAAGCT
751400 CGCCACTTCC
Statistics
Matches: 147, Mismatches: 3, Indels: 6
0.94 0.02 0.04
Matches are distributed among these distances:
151 99 0.67
152 29 0.20
153 3 0.02
154 16 0.11
ACGTcount: A:0.19, C:0.27, G:0.13, T:0.42
Consensus pattern (154 bp):
TCTAAACTCGAAATCTTCCCCTTCAGTTTCTCGCTCTGGGCTTGACCTTATTGTAATTGCTGCTC
TAAACAACTCTTTTCCTTTGACAAAATCTTAATTTGATGCCTGCTTTGCTTGAGCTCTTCTTGAG
TCTCCCAGCTTCTCTCTTTAAGCT
Found at i:754584 original size:45 final size:45
Alignment explanation
Indices: 754460--755087 Score: 640
Period size: 45 Copynumber: 14.0 Consensus size: 45
754450 GAAACTTCAA
* * * * * *
754460 CTTGACTTTCCCGTGAAGAGGAGTCAA--TTTCAGTGGTATCCTT
1 CTTGACTTTCTCGCGAAGAGGAGTCAACCTTTTAGTGTTGTCATT
* * * *
754503 CTTGACTTTCTCGCGAAAAAGGAGTCAACGTTTTAGTGTTTTCTTT
1 CTTGACTTTCTCGCG-AAGAGGAGTCAACCTTTTAGTGTTGTCATT
* * * * *
754549 ATTGACTTTCTCGTGAAGAGAAATCAACCTTTTAGTATTGTCATT
1 CTTGACTTTCTCGCGAAGAGGAGTCAACCTTTTAGTGTTGTCATT
* * * * * *
754594 CTTGAATTTATCGTGAAGAGGAGTTAA-TTGTTTAGTGTTGTCCTT
1 CTTGACTTTCTCGCGAAGAGGAGTCAACCT-TTTAGTGTTGTCATT
* * *
754639 CTTGATTTTCTCACGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
1 CTTGACTTTCTCGCGAAGAGGAGTCAACCTTTTAGTGTTGTCATT
* *
754684 CTTGACTTTCTCGCGAAGAGGAGTCAATCTTTTAGTGTTGTCCTT
1 CTTGACTTTCTCGCGAAGAGGAGTCAACCTTTTAGTGTTGTCATT
* * ** * *
754729 CTTGACTTTATCACGAAGAGGAGTTGATCTTTTAGTGTTGTCCTT
1 CTTGACTTTCTCGCGAAGAGGAGTCAACCTTTTAGTGTTGTCATT
* * *
754774 CTTGACTTTCTC-CAGAAGAGGAGTCAACCTTTTAGTGATATGATT
1 CTTGACTTTCTCGC-GAAGAGGAGTCAACCTTTTAGTGTTGTCATT
* * * * *
754819 CTTGATTTTCTCGCGAAGAGGATTCAACCTTTTATTGATGTTATT
1 CTTGACTTTCTCGCGAAGAGGAGTCAACCTTTTAGTGTTGTCATT
* * * ** *
754864 ATTGAATTTATCATGAAGAGGAGTCAATCTTTTAGTGTTGTCATT
1 CTTGACTTTCTCGCGAAGAGGAGTCAACCTTTTAGTGTTGTCATT
* * * * *
754909 CTTGACTTTCTCACGAAGAGGAATCAACCTTTTAATTTTGTC-CT
1 CTTGACTTTCTCGCGAAGAGGAGTCAACCTTTTAGTGTTGTCATT
* *
754953 C-TAACTTTCTCGCG-AGAGGAGTCAACCTTTTAGTGATGTCATT
1 CTTGACTTTCTCGCGAAGAGGAGTCAACCTTTTAGTGTTGTCATT
* * * *
754996 CTTGACTTTCTCACGAAGAAGAGTCAACCTTTTAGTGATGTGATT
1 CTTGACTTTCTCGCGAAGAGGAGTCAACCTTTTAGTGTTGTCATT
* * *
755041 CTTGACTTTCTCGGGAAGAGGAGTTAACCTTTTAGTGATGTCATT
1 CTTGACTTTCTCGCGAAGAGGAGTCAACCTTTTAGTGTTGTCATT
755086 CT
1 CT
755088 CAGCTTGACT
Statistics
Matches: 488, Mismatches: 87, Indels: 18
0.82 0.15 0.03
Matches are distributed among these distances:
42 22 0.05
43 26 0.05
44 26 0.05
45 387 0.79
46 27 0.06
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (45 bp):
CTTGACTTTCTCGCGAAGAGGAGTCAACCTTTTAGTGTTGTCATT
Found at i:755523 original size:45 final size:44
Alignment explanation
Indices: 755466--755696 Score: 161
Period size: 45 Copynumber: 5.2 Consensus size: 44
755456 CACCGATTCA
*
755466 ATCTTCCTTGAAGAGCAATGAAATGAATCAACGTTTCCAGATTTG
1 ATCTTCCCTGAAGAGCAATGAAATGAATCAAC-TTTCCAGATTTG
* *
755511 ATCTTCCCTGAAGAGCAAT-AAATTGAATCAACGTTTCTAGATCTG
1 ATCTTCCCTGAAGAGCAATGAAA-TGAATCAAC-TTTCCAGATTTG
* * * * *
755556 ATCTACCCTGAAGAGTAGT-AGAAT-AGATC-CCTTTTTTCAGATTTG
1 ATCTTCCCTGAAGAGCAATGA-AATGA-ATCAAC--TTTCCAGATTTG
* * * * * * *
755601 ATATTCCCTAAAGAGCAGTGAAGTAAATCAAC-CT-C-GATTTA
1 ATCTTCCCTGAAGAGCAATGAAATGAATCAACTTTCCAGATTTG
* * * *
755642 ATCTTCCTTGAAGAGAAATGAAGTGAATCAAACTTTCCAGATCTG
1 ATCTTCCCTGAAGAGCAATGAAATGAATC-AACTTTCCAGATTTG
*
755687 ATCTACCCTG
1 ATCTTCCCTG
755697 GAATACAATA
Statistics
Matches: 145, Mismatches: 30, Indels: 22
0.74 0.15 0.11
Matches are distributed among these distances:
41 28 0.19
42 4 0.03
43 2 0.01
44 6 0.04
45 100 0.69
46 5 0.03
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.31
Consensus pattern (44 bp):
ATCTTCCCTGAAGAGCAATGAAATGAATCAACTTTCCAGATTTG
Found at i:755640 original size:41 final size:41
Alignment explanation
Indices: 755595--755672 Score: 93
Period size: 41 Copynumber: 1.9 Consensus size: 41
755585 CCTTTTTTCA
* * *
755595 GATTTGATATTCCCTAAAGAGCAGTGAAGTAAATCAACCTC
1 GATTTAATATTCCCTAAAGAGAAATGAAGTAAATCAACCTC
* * * *
755636 GATTTAATCTTCCTTGAAGAGAAATGAAGTGAATCAA
1 GATTTAATATTCCCTAAAGAGAAATGAAGTAAATCAA
755673 ACTTTCCAGA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 30 1.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.28
Consensus pattern (41 bp):
GATTTAATATTCCCTAAAGAGAAATGAAGTAAATCAACCTC
Found at i:755646 original size:131 final size:130
Alignment explanation
Indices: 755505--755823 Score: 363
Period size: 131 Copynumber: 2.4 Consensus size: 130
755495 AACGTTTCCA
* * * *
755505 GATTTGATCTTCCCTGAAGAGCAATAAATTGAATC-AACGTTTCTAGATCTGATCTACCCT-GAA
1 GATTTAATCTTCCCTGAAGAGAAATAAAGTGAATCAAAC-TTTCCAGATCTGATCTACCCTGGAA
* * * **
755568 GAGTAGTAGAATAGATCCCTTTTTTCAGATTTGATATTCCCTAAAGAGCAGTGAAGTAAATCAAC
65 GA-CAATAGAACAGATCCCTTTTTTCAGATTTGATATTCCCT-AAGAGCAGTGAAACAAATCAAC
755633 CTC
128 CTC
* * *
755636 GATTTAATCTTCCTTGAAGAGAAATGAAGTGAATCAAACTTTCCAGATCTGATCTACCCTGGAAT
1 GATTTAATCTTCCCTGAAGAGAAATAAAGTGAATCAAACTTTCCAGATCTGATCTACCCTGGAAG
* * * * * *
755701 ACAATAGAGCAGATCCCTTTTTTCAGATTTGATCTTCCCTGAGAGTAGTGAAACAATTCTACCTC
66 ACAATAGAACAGATCCCTTTTTTCAGATTTGATATTCCCTAAGAGCAGTGAAACAAATCAACCTC
* *** * * * *
755766 GATTCAATCTTCCCTGAAGAGTGGTGAAGTAAATCAAAGTTTCCAGATATGATCTACC
1 GATTTAATCTTCCCTGAAGAGAAATAAAGTGAATCAAACTTTCCAGATCTGATCTACC
755824 ATAGAGAACA
Statistics
Matches: 160, Mismatches: 26, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
130 69 0.43
131 84 0.52
132 7 0.04
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (130 bp):
GATTTAATCTTCCCTGAAGAGAAATAAAGTGAATCAAACTTTCCAGATCTGATCTACCCTGGAAG
ACAATAGAACAGATCCCTTTTTTCAGATTTGATATTCCCTAAGAGCAGTGAAACAAATCAACCTC
Found at i:757814 original size:2 final size:2
Alignment explanation
Indices: 757807--757845 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
757797 ACATGTTCAT
* *
757807 TA TA TA TA TA TA TA TA TA AA TA TA TA TA TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
757846 TTTAAATACA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:762927 original size:17 final size:19
Alignment explanation
Indices: 762905--762951 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 19
762895 TTGGAAGAGT
*
762905 GTTTTGGGATATAT-C-GG
1 GTTTTGGGATATATACTAG
* *
762922 GTTTTGGTATCTATACTAG
1 GTTTTGGGATATATACTAG
762941 GTTTTGGGATA
1 GTTTTGGGATA
762952 CATATGATAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 12 0.52
18 1 0.04
19 10 0.43
ACGTcount: A:0.19, C:0.06, G:0.30, T:0.45
Consensus pattern (19 bp):
GTTTTGGGATATATACTAG
Found at i:763920 original size:20 final size:20
Alignment explanation
Indices: 763895--763965 Score: 74
Period size: 20 Copynumber: 3.5 Consensus size: 20
763885 TCTGGACAAG
763895 TAGTATCGATATTGTTCATA
1 TAGTATCGATATTGTTCATA
*
763915 TAGTATCGATA--GCTCATGAA
1 TAGTATCGATATTGTTCAT--A
* *
763935 CAATATCGATATTGTTCATA
1 TAGTATCGATATTGTTCATA
*
763955 TGGTATCGATA
1 TAGTATCGATA
763966 CCAAAGGTAA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
18 5 0.12
20 30 0.75
22 5 0.12
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (20 bp):
TAGTATCGATATTGTTCATA
Found at i:767094 original size:19 final size:19
Alignment explanation
Indices: 767058--767094 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
767048 TGAAAATGAT
*
767058 TTGATTTTGAAAGCCAAAG
1 TTGATTTTGAAAACCAAAG
*
767077 TTGATTTTGAAAATCAAA
1 TTGATTTTGAAAACCAAA
767095 ATAAAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.08, G:0.16, T:0.35
Consensus pattern (19 bp):
TTGATTTTGAAAACCAAAG
Found at i:770650 original size:32 final size:32
Alignment explanation
Indices: 770614--770674 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
770604 TCCAAATGTA
*
770614 ACACTGACACTCTTGTGCATTATCTGAATACT
1 ACACTAACACTCTTGTGCATTATCTGAATACT
** * *
770646 ACACTAACTTTGTTGTGCATTGTCTGAAT
1 ACACTAACACTCTTGTGCATTATCTGAAT
770675 GCACCCCTGA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (32 bp):
ACACTAACACTCTTGTGCATTATCTGAATACT
Found at i:773393 original size:15 final size:14
Alignment explanation
Indices: 773361--773433 Score: 60
Period size: 15 Copynumber: 4.9 Consensus size: 14
773351 ATTTCTATTA
773361 TTTATTTATT-TTTAT
1 TTTATTT-TTCTTT-T
773376 TTTACTTTTTCTTTT
1 TTTA-TTTTTCTTTT
*
773391 TTT-TCTTTCTATTT
1 TTTATTTTTCT-TTT
773405 TTCTATTTTTCTATTT
1 TT-TATTTTTCT-TTT
*
773421 TTTATTCTTCTTT
1 TTTATTTTTCTTT
773434 AGAAATGATA
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
13 6 0.12
14 7 0.14
15 19 0.38
16 18 0.36
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTATTTTTCTTTT
Found at i:773405 original size:21 final size:21
Alignment explanation
Indices: 773348--773420 Score: 76
Period size: 22 Copynumber: 3.3 Consensus size: 21
773338 TGTCTATGTA
*
773348 TTTATTTCTATTATTTATTTATT
1 TTTATTTCTATT-TTTCTTT-TT
773371 TTTATTT-TACTTTTTCTTTTT
1 TTTATTTCTA-TTTTTCTTTTT
*
773392 TTTCTTTCTATTTTTCTATTTT
1 TTTATTTCTATTTTTCT-TTTT
*
773414 TCTATTT
1 TTTATTT
773421 TTTATTCTTC
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
21 15 0.35
22 19 0.44
23 9 0.21
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.77
Consensus pattern (21 bp):
TTTATTTCTATTTTTCTTTTT
Found at i:773406 original size:16 final size:16
Alignment explanation
Indices: 773387--773429 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
773377 TTACTTTTTC
773387 TTTTTT-TTCTTTCTA
1 TTTTTTATTCTTTCTA
773402 TTTTTCTATT-TTTCTA
1 TTTTT-TATTCTTTCTA
773418 TTTTTTATTCTT
1 TTTTTTATTCTT
773430 CTTTAGAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 9 0.36
16 14 0.56
17 2 0.08
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTTATTCTTTCTA
Found at i:773407 original size:8 final size:8
Alignment explanation
Indices: 773396--773431 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
773386 CTTTTTTTTC
773396 TTTCTATT
1 TTTCTATT
773404 TTTCTATT
1 TTTCTATT
773412 TTTCTATT
1 TTTCTATT
773420 TTT-TATT
1 TTTCTATT
*
773427 CTTCT
1 TTTCT
773432 TTAGAAATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTCTATT
Found at i:773413 original size:20 final size:21
Alignment explanation
Indices: 773366--773416 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
773356 TATTATTTAT
*
773366 TTATTTTTATTTTACTTTTTC
1 TTATTTTTCTTTTACTTTTTC
*
773387 TTTTTTTTCTTTCTA-TTTTTC
1 TTATTTTTCTTT-TACTTTTTC
773408 -TATTTTTCT
1 TTATTTTTCT
773417 ATTTTTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 8 0.31
21 16 0.62
22 2 0.08
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (21 bp):
TTATTTTTCTTTTACTTTTTC
Found at i:773763 original size:104 final size:103
Alignment explanation
Indices: 773615--774057 Score: 384
Period size: 104 Copynumber: 4.3 Consensus size: 103
773605 CTTAAGTGAC
* ** * * *
773615 ACGAAA-TTTGTTTCAAGAGAAACAATATCAAGTG-GTATACATTTTTCT-TTTTGAGTGAAATG
1 ACGAAATTTTGTTTCAAGGGAAACAACCTCAAGTGAG-ATAAATTTTT-TATTTCGAGTGAAATA
* * * * *
773677 ATC-CTGAAGTTTGTATTTCGATGGAAACTGTCTTGAGCGAG
64 ATCTC-AAAGTTTGTGTTTCAAGGGAAACTGTCTCGAG-GAG
* * **
773718 A-GAAAATTTTGTTTCAAGGGAAACAACCTCAAGCGAGATAAATTTTTTGTTTCGAGTGAAGCAA
1 ACG-AAATTTTGTTTCAAGGGAAACAACCTCAAGTGAGATAAATTTTTTATTTCGAGTGAAATAA
* * * * * * *
773782 ACTGAAAGTTTGTGTTTCAAAGGATATTCTCTCAAGAGAG
65 TCTCAAAGTTTGTGTTTCAAGGGAAACTGTCTCGAG-GAG
* * * * * *
773822 ATGAAATTTT-TCTTTAAGGGAAACAACCTCAAGTGAGATAATTTTTTTGTTTCGAGTGTAACAA
1 ACGAAATTTTGT-TTCAAGGGAAACAACCTCAAGTGAGATAAATTTTTTATTTCGAGTGAAATAA
**
773886 TCTCAAAGTTTACGTTTCAAGGGAAACTGTCTCGAGTGAG
65 TCTCAAAGTTTGTGTTTCAAGGGAAACTGTCTCGAG-GAG
* * *
773926 AC---ATTTTTTTTCAAGAGAAACAACCTCAAGTGAGATAAATTTTTTATTTCAAGTGAAATAAT
1 ACGAAATTTTGTTTCAAGGGAAACAACCTCAAGTGAGATAAATTTTTTATTTCGAGTGAAATAAT
* * * * *
773988 CTCAAAATTTTTGTTTCAAGGGAAACTATATTGAGTGAG
66 CTCAAAGTTTGTGTTTCAAGGGAAACTGTCTCGAG-GAG
*
774027 ACGAAA-TTTGTTTCAAGGGAAACAATCTCAA
1 ACGAAATTTTGTTTCAAGGGAAACAACCTCAA
774058 TGTTTTGAAA
Statistics
Matches: 276, Mismatches: 53, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
101 86 0.31
102 2 0.01
103 28 0.10
104 158 0.57
105 2 0.01
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34
Consensus pattern (103 bp):
ACGAAATTTTGTTTCAAGGGAAACAACCTCAAGTGAGATAAATTTTTTATTTCGAGTGAAATAAT
CTCAAAGTTTGTGTTTCAAGGGAAACTGTCTCGAGGAG
Found at i:773989 original size:101 final size:101
Alignment explanation
Indices: 773723--774057 Score: 366
Period size: 101 Copynumber: 3.3 Consensus size: 101
773713 GCGAGAGAAA
* * * *
773723 ATTTTGTTTCAAGGGAAACAACCTCAAGCGAGATAAATTTTTTGTTTCGAGTGAAGCAAACTGAA
1 ATTTTGTTTCAAGGGAAACAACCTCAAGTGAGATAAATTTTTTGTTTCGAGTGAAACAATCTCAA
* * * * * * *
773788 AGTTTGTGTTTCAAAGGATATTCTCTCAAGAGAGATGAA
66 AGTTTATGTTTCAAGGGAAACTATCTC--GAGTGA-GAC
* * *
773827 ATTTT-TCTTTAAGGGAAACAACCTCAAGTGAGATAATTTTTTTGTTTCGAGTGTAACAATCTCA
1 ATTTTGT-TTCAAGGGAAACAACCTCAAGTGAGATAAATTTTTTGTTTCGAGTGAAACAATCTCA
* *
773891 AAGTTTACGTTTCAAGGGAAACTGTCTCGAGTGAGAC
65 AAGTTTATGTTTCAAGGGAAACTATCTCGAGTGAGAC
* * * * *
773928 ATTTTTTTTCAAGAGAAACAACCTCAAGTGAGATAAATTTTTTATTTCAAGTGAAATAATCTCAA
1 ATTTTGTTTCAAGGGAAACAACCTCAAGTGAGATAAATTTTTTGTTTCGAGTGAAACAATCTCAA
* * * *
773993 AATTTTTGTTTCAAGGGAAACTATATTGAGTGAGAC
66 AGTTTATGTTTCAAGGGAAACTATCTCGAGTGAGAC
* *
774029 GAAATTTGTTTCAAGGGAAACAATCTCAA
1 --ATTTTGTTTCAAGGGAAACAACCTCAA
774058 TGTTTTGAAA
Statistics
Matches: 195, Mismatches: 32, Indels: 9
0.83 0.14 0.04
Matches are distributed among these distances:
101 88 0.45
102 6 0.03
103 24 0.12
104 77 0.39
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.34
Consensus pattern (101 bp):
ATTTTGTTTCAAGGGAAACAACCTCAAGTGAGATAAATTTTTTGTTTCGAGTGAAACAATCTCAA
AGTTTATGTTTCAAGGGAAACTATCTCGAGTGAGAC
Found at i:783327 original size:20 final size:18
Alignment explanation
Indices: 783287--783360 Score: 67
Period size: 20 Copynumber: 3.9 Consensus size: 18
783277 AAACAAACTA
**
783287 AAAGTATCGATACTAGCGT
1 AAAGTATCGATACT-TTGT
783306 AAGAGTATCGATACTCTTGT
1 AA-AGTATCGATACT-TTGT
* *
783326 AAAAGTTTCGATACTTTAT
1 -AAAGTATCGATACTTTGT
*
783345 AAAGTACCGATACTTT
1 AAAGTATCGATACTTT
783361 AAACATTTGT
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
18 14 0.30
19 5 0.11
20 25 0.54
21 2 0.04
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (18 bp):
AAAGTATCGATACTTTGT
Found at i:785784 original size:19 final size:16
Alignment explanation
Indices: 785739--785795 Score: 82
Period size: 16 Copynumber: 3.6 Consensus size: 16
785729 ATTGGTTTTC
785739 AAGTCTTCAACAACTT
1 AAGTCTTCAACAACTT
785755 AAGTCTTCAACAACTT
1 AAGTCTTCAACAACTT
785771 AAGTCTAT-AACAACTT
1 AAGTCT-TCAACAACTT
785787 CAA-TCTTCA
1 -AAGTCTTCA
785796 CGTAAGCTGC
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
15 1 0.03
16 34 0.89
17 3 0.08
ACGTcount: A:0.39, C:0.25, G:0.05, T:0.32
Consensus pattern (16 bp):
AAGTCTTCAACAACTT
Found at i:787197 original size:120 final size:119
Alignment explanation
Indices: 786977--787216 Score: 455
Period size: 120 Copynumber: 2.0 Consensus size: 119
786967 TTCTCGCGTT
786977 GAGATCCATCCGCATGAGTCATGAAGGCTCCTATTACTTGGTGCTCAAGAATCAACACTTGTGGT
1 GAGATCCATCCGCATGAGTCATGAAGGCTCCTATTACTTGGTGCTCAAGAATCAACACTTGTGGT
787042 GCCCATCCCCTTATTATAACTCCTTTGCCTTCATTTTCTTTTCAAATCCTTCAG
66 GCCCATCCCCTTATTATAACTCCTTTGCCTTCATTTTCTTTTCAAATCCTTCAG
787096 GAGATCCATCCGCAATGAGTCATGAAGGCTCCTATTACTTGGTGCTCAAGAATCAACACTTGTGG
1 GAGATCCATCCGC-ATGAGTCATGAAGGCTCCTATTACTTGGTGCTCAAGAATCAACACTTGTGG
787161 TGCCCATCCCCTTATTATAACTCC-TTGCCTTCCATTTTCTTTTCAAATCCTTCAG
65 TGCCCATCCCCTTATTATAACTCCTTTGCCTT-CATTTTCTTTTCAAATCCTTCAG
787216 G
1 G
787217 TAACCAGTCC
Statistics
Matches: 119, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
119 20 0.17
120 99 0.83
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (119 bp):
GAGATCCATCCGCATGAGTCATGAAGGCTCCTATTACTTGGTGCTCAAGAATCAACACTTGTGGT
GCCCATCCCCTTATTATAACTCCTTTGCCTTCATTTTCTTTTCAAATCCTTCAG
Found at i:789264 original size:18 final size:19
Alignment explanation
Indices: 789241--789280 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
789231 TGCAAAAATG
789241 GTATTGATA-CATATTAGA
1 GTATTGATACCATATTAGA
* *
789259 GTATTGGTACCATATTATA
1 GTATTGATACCATATTAGA
789278 GTA
1 GTA
789281 GTATCGATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.40
Consensus pattern (19 bp):
GTATTGATACCATATTAGA
Found at i:789588 original size:54 final size:54
Alignment explanation
Indices: 789504--789696 Score: 269
Period size: 54 Copynumber: 3.6 Consensus size: 54
789494 GTACCTAAGT
* * *
789504 ATGAATAACCATTTCGACACTCAGTGTGCAAAGTACGAAATTCATCATATGTTG
1 ATGAATAACCGTTTCGGCACTAAGTGTGCAAAGTACGAAATTCATCATATGTTG
* * *
789558 ATGAATAGCCGTTTAGGCACTAAGTGTGCAAAGTATGAAATTCATCATATGTTG
1 ATGAATAACCGTTTCGGCACTAAGTGTGCAAAGTACGAAATTCATCATATGTTG
* * * **
789612 ATGAATAACTGTTTCGGAACTACGTGTGCAAAGTACTTAATTCATCATATGTTG
1 ATGAATAACCGTTTCGGCACTAAGTGTGCAAAGTACGAAATTCATCATATGTTG
* *
789666 ATGAATAACCATTTCGGCACTATGTGTGCAA
1 ATGAATAACCGTTTCGGCACTAAGTGTGCAA
789697 CCCATAGAAT
Statistics
Matches: 121, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 121 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (54 bp):
ATGAATAACCGTTTCGGCACTAAGTGTGCAAAGTACGAAATTCATCATATGTTG
Found at i:789749 original size:108 final size:108
Alignment explanation
Indices: 789529--789749 Score: 248
Period size: 108 Copynumber: 2.0 Consensus size: 108
789519 GACACTCAGT
* * **
789529 GTGCAAAGTACGAAATTCATCATATGTTGATGAATAGCCGTTTAGGCACTAAGTGTGCAAAGTAT
1 GTGCAAAGTACGAAATTCATCATATGTTGATGAATAACCATTTAGGCACTAAGTGTGCAAACCAT
* * * * * *
789594 GAAATTCATCATATGTTGATGAATAACTGTTTCGGAACTACGT
66 GAAATTCATAATATGTTGATGAATAACCGTATAGGAACCACGG
** * * *
789637 GTGCAAAGTACTTAATTCATCATATGTTGATGAATAACCATTTCGGCACTATGTGTGCAACCCAT
1 GTGCAAAGTACGAAATTCATCATATGTTGATGAATAACCATTTAGGCACTAAGTGTGCAAACCAT
* * *
789702 -AGAATTCATAATGA-GTTTATGAATGACCGTATAGGCACCACGG
66 GA-AATTCATAAT-ATGTTGATGAATAACCGTATAGGAACCACGG
789745 GTGCA
1 GTGCA
789750 TCATAATGAA
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
107 1 0.01
108 91 0.98
109 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (108 bp):
GTGCAAAGTACGAAATTCATCATATGTTGATGAATAACCATTTAGGCACTAAGTGTGCAAACCAT
GAAATTCATAATATGTTGATGAATAACCGTATAGGAACCACGG
Found at i:802749 original size:54 final size:54
Alignment explanation
Indices: 802686--803004 Score: 460
Period size: 54 Copynumber: 5.9 Consensus size: 54
802676 TTACCAAATA
*
802686 GACACTAAGTGTGCAAAGTACGGAATTCATCATATGTTGATGAATAACCATTTC
1 GACACTAAGTGTGCAAAGTACGAAATTCATCATATGTTGATGAATAACCATTTC
* * *
802740 GACACTAAGTGTGCAAAGTACGAAATTCATCATATGTTGATAAATAACCGTTTT
1 GACACTAAGTGTGCAAAGTACGAAATTCATCATATGTTGATGAATAACCATTTC
* * * * * * *
802794 GGCACCAAGTGTGAAAAGTAAGGAATTCATCATATGTTGATGAATAACCGTTTT
1 GACACTAAGTGTGCAAAGTACGAAATTCATCATATGTTGATGAATAACCATTTC
*
802848 GGCACTAAGTGTGCAAAGTACGAAATTCATCATATGTTGATGAATAACCGATTT-
1 GACACTAAGTGTGCAAAGTACGAAATTCATCATATGTTGATGAATAACC-ATTTC
** *
802902 GGTACTAAGTGTGTAAAGTACGAAATTCATCATATGTTGATGAATAACCATTTC
1 GACACTAAGTGTGCAAAGTACGAAATTCATCATATGTTGATGAATAACCATTTC
* * *
802956 TACACTAAGTGTCCAAAGTACAAAATTCATCATATGTTGATGAATAACC
1 GACACTAAGTGTGCAAAGTACGAAATTCATCATATGTTGATGAATAACC
803005 GTTCGGCACT
Statistics
Matches: 240, Mismatches: 23, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
53 4 0.02
54 233 0.97
55 3 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (54 bp):
GACACTAAGTGTGCAAAGTACGAAATTCATCATATGTTGATGAATAACCATTTC
Found at i:803984 original size:14 final size:15
Alignment explanation
Indices: 803965--803993 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
803955 CATCTATAAT
803965 CATAAC-AAAATATG
1 CATAACTAAAATATG
803979 CATAACTAAAATATG
1 CATAACTAAAATATG
803994 ATTCATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.14, G:0.07, T:0.24
Consensus pattern (15 bp):
CATAACTAAAATATG
Found at i:807191 original size:35 final size:36
Alignment explanation
Indices: 807131--807237 Score: 132
Period size: 39 Copynumber: 3.0 Consensus size: 36
807121 ATTAATCTTC
807131 AATAA-AAAAA-ACCCCAAATTT-TTATGAAACCT-T
1 AATAAGAAAAATA-CCCAAATTTCTTATGAAACCTAT
*
807164 AATAAGAAAAATACTCAAATTTCTTATGAAACCTTTAAT
1 AATAAGAAAAATACCCAAATTTCTTATGAAACC--T-AT
*
807203 AATAATAAAAATACCCAAATTTCTTATGAAACCTA
1 AATAAGAAAAATACCCAAATTTCTTATGAAACCTA
807238 AATTGGTGAT
Statistics
Matches: 64, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
33 5 0.08
34 13 0.20
35 11 0.17
36 1 0.02
37 2 0.03
39 32 0.50
ACGTcount: A:0.50, C:0.16, G:0.04, T:0.30
Consensus pattern (36 bp):
AATAAGAAAAATACCCAAATTTCTTATGAAACCTAT
Found at i:810860 original size:4 final size:4
Alignment explanation
Indices: 810851--810979 Score: 82
Period size: 4 Copynumber: 31.8 Consensus size: 4
810841 GGCGGTAATT
** * * ** * *
810851 TTTA TTTA TTTA TTTA TTT- TGGA TTAA TTTG TGGA TTGA TTTG TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
** ** * *
810898 TTTA TTTA TTTA GGTA TTT- TAAA TTTA TTTA TCTTT TTTG TTTCAAA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTT---A
810945 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
810980 GATGGGAAAT
Statistics
Matches: 95, Mismatches: 24, Indels: 12
0.73 0.18 0.09
Matches are distributed among these distances:
3 2 0.02
4 87 0.92
5 3 0.03
7 3 0.03
ACGTcount: A:0.23, C:0.02, G:0.08, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:812644 original size:27 final size:26
Alignment explanation
Indices: 812614--812666 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
812604 CACCAACTCT
812614 ACTCAGTCAGT-ATTTCAACATATGGCG
1 ACTCAGTCA-TCATTTCAACAT-TGGCG
* *
812641 ACTCTGTCATCATTTCAGCATTGGCG
1 ACTCAGTCATCATTTCAACATTGGCG
812667 CCATCAACGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.32
Consensus pattern (26 bp):
ACTCAGTCATCATTTCAACATTGGCG
Found at i:813213 original size:17 final size:17
Alignment explanation
Indices: 813168--813213 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
813158 TTTTTTTAAA
*
813168 AATTTGTTTAAATTATT
1 AATTTCTTTAAATTATT
**
813185 AATCAACTTTAAATTATT
1 AAT-TTCTTTAAATTATT
813203 AATTTCTTTAA
1 AATTTCTTTAA
813214 GTTTTCCTTG
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (17 bp):
AATTTCTTTAAATTATT
Found at i:813812 original size:18 final size:18
Alignment explanation
Indices: 813763--813812 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
813753 AATGTTGCTT
* *
813763 CCACATCAGGAATATCTG
1 CCACATCAGGAATCTCTA
* *
813781 CCACGTCAAGAATCTCTA
1 CCACATCAGGAATCTCTA
*
813799 CCATATCAGGAATC
1 CCACATCAGGAATC
813813 CCTTAGTAAC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.34, C:0.30, G:0.14, T:0.22
Consensus pattern (18 bp):
CCACATCAGGAATCTCTA
Found at i:815112 original size:32 final size:32
Alignment explanation
Indices: 815068--815143 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
815058 TAGTGGGTGT
* * *
815068 GGGGATGAATTTAATAATGTACCCGTATGAGC
1 GGGGATGGATTTAAGAATGTACCCGCATGAGC
* *
815100 GGGGATGGATTTAAGAATGTAGCCGCATGTGC
1 GGGGATGGATTTAAGAATGTACCCGCATGAGC
815132 GGGTG-TGGATTT
1 GGG-GATGGATTT
815144 GAAAAAAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
32 37 0.97
33 1 0.03
ACGTcount: A:0.25, C:0.11, G:0.36, T:0.29
Consensus pattern (32 bp):
GGGGATGGATTTAAGAATGTACCCGCATGAGC
Found at i:816008 original size:41 final size:41
Alignment explanation
Indices: 815929--816009 Score: 108
Period size: 42 Copynumber: 2.0 Consensus size: 41
815919 AAATAAAGAA
*
815929 TAAACGTAATAAAAATGACATAAAAATATAATATTTTTTAT
1 TAAACGTAATAAAAATGACATAAAAATATAACATTTTTTAT
* ** *
815970 TAAACGTAATCTAAAATGTTATAAAAATGTAACATTTTTT
1 TAAACGTAAT-AAAAATGACATAAAAATATAACATTTTTT
816010 GATGAACCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
41 10 0.29
42 24 0.71
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.38
Consensus pattern (41 bp):
TAAACGTAATAAAAATGACATAAAAATATAACATTTTTTAT
Found at i:820205 original size:27 final size:26
Alignment explanation
Indices: 820172--820230 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
820162 TGTCTAATTT
*
820172 TTATTTACATTTTA-TATTAATATTTTA
1 TTATTTA-ATTTTACTAATAAT-TTTTA
* *
820199 TTATTTATTTTTACTAATAATTTTTT
1 TTATTTAATTTTACTAATAATTTTTA
820225 TTATTT
1 TTATTT
820231 TTTTAAGTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 15 0.54
27 13 0.46
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (26 bp):
TTATTTAATTTTACTAATAATTTTTA
Found at i:820415 original size:19 final size:18
Alignment explanation
Indices: 820386--820425 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
820376 CTCACGCCTA
820386 AATTTGTTTC-AATCTCGC
1 AATTTGTTTCAAAT-TCGC
820404 AATTTCGTTTCAAATTCGC
1 AATTT-GTTTCAAATTCGC
820423 AAT
1 AAT
820426 GTCATAGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 5 0.25
19 12 0.60
20 3 0.15
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.42
Consensus pattern (18 bp):
AATTTGTTTCAAATTCGC
Found at i:820438 original size:20 final size:20
Alignment explanation
Indices: 820413--820564 Score: 86
Period size: 20 Copynumber: 7.6 Consensus size: 20
820403 CAATTTCGTT
*
820413 TCAAATTCGCAATGTCATAG
1 TCAAATTCGCAACGTCATAG
*
820433 TCAAATTCACAACG-CGATAG
1 TCAAATTCGCAACGTC-ATAG
* *
820453 TTAAATTCGCAACGCTGA-AG
1 TCAAATTCGCAACG-TCATAG
*
820473 TCAAATTCGCAACGTGAATATG
1 TCAAATTCGCAACGT-CATA-G
* * *
820495 T-AAA-TCGCAACTTGAATTTG
1 TCAAATTCGCAACGT-CA-TAG
*
820515 T-AAA-TCGCAAC-TCAGAAG
1 TCAAATTCGCAACGTCA-TAG
*
820533 TCAAATTCGCAACG-CGAAAG
1 TCAAATTCGCAACGTC-ATAG
820553 TCAAATTCGCAA
1 TCAAATTCGCAA
820565 AGCGCGTTTA
Statistics
Matches: 108, Mismatches: 13, Indels: 22
0.76 0.09 0.15
Matches are distributed among these distances:
18 3 0.03
19 6 0.06
20 90 0.83
21 7 0.06
22 2 0.02
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.24
Consensus pattern (20 bp):
TCAAATTCGCAACGTCATAG
Found at i:820563 original size:40 final size:41
Alignment explanation
Indices: 820413--820564 Score: 106
Period size: 40 Copynumber: 3.8 Consensus size: 41
820403 CAATTTCGTT
* * * *
820413 TCAAATTCGCAATGTC-ATAGTCAAATTCACAACGC-GATAG
1 TCAAATTCGCAACG-CGAAAGTCAAATTCGCAACTCAGATAG
* *
820453 TTAAATTCGCAACGCTG-AAGTCAAATTCGCAACGTGA-ATATG
1 TCAAATTCGCAACGC-GAAAGTCAAATTCGCAAC-TCAGATA-G
** *
820495 T-AAA-TCGCAACTTGAATTTGT-AAA-TCGCAACTCAGA-AG
1 TCAAATTCGCAACGCGAA--AGTCAAATTCGCAACTCAGATAG
820533 TCAAATTCGCAACGCGAAAGTCAAATTCGCAA
1 TCAAATTCGCAACGCGAAAGTCAAATTCGCAA
820565 AGCGCGTTTA
Statistics
Matches: 86, Mismatches: 13, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
38 4 0.05
39 11 0.13
40 58 0.67
41 9 0.10
42 4 0.05
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.24
Consensus pattern (41 bp):
TCAAATTCGCAACGCGAAAGTCAAATTCGCAACTCAGATAG
Found at i:820592 original size:13 final size:13
Alignment explanation
Indices: 820574--820598 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
820564 AAGCGCGTTT
820574 ATTTTCGCAACAA
1 ATTTTCGCAACAA
820587 ATTTTCGCAACA
1 ATTTTCGCAACA
820599 TTGTTTACCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (13 bp):
ATTTTCGCAACAA
Found at i:820752 original size:74 final size:75
Alignment explanation
Indices: 820624--820807 Score: 235
Period size: 74 Copynumber: 2.4 Consensus size: 75
820614 GGTAATTAGA
* * * * * * *
820624 GTTGCGAATTTGAAAATCGCGTTGCGATAGTACTGTTTACCTATATCAGTAATTAGCGTTGCGAA
1 GTTGAGAATTTGTAAACCGCGTTGCTA-ATTACCGATTACCTATATCAGTAATTAGCGTTGCGAA
820689 TTTGAAAA-TC
65 TTTGAAAACTC
* *
820699 GTTGATAATTTGTAAACCGCGTTGCTAATTACCGATTACCTATATCGGTAATTAGCGTTGCGAAT
1 GTTGAGAATTTGTAAACCGCGTTGCTAATTACCGATTACCTATATCAGTAATTAGCGTTGCGAAT
820764 TTGAAAATCTC
66 TTGAAAA-CTC
* **
820775 GTTGCGAATTTGTAAATTGCGTTGCTAATTACC
1 GTTGAGAATTTGTAAACCGCGTTGCTAATTACC
820808 TATATAGGTA
Statistics
Matches: 94, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
74 41 0.44
75 22 0.23
76 31 0.33
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (75 bp):
GTTGAGAATTTGTAAACCGCGTTGCTAATTACCGATTACCTATATCAGTAATTAGCGTTGCGAAT
TTGAAAACTC
Found at i:820779 original size:20 final size:20
Alignment explanation
Indices: 820748--820804 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 20
820738 CTATATCGGT
820748 AATTAGCGTTGCGAATTTGAA
1 AATT-GCGTTGCGAATTTGAA
*
820769 AATCT-CGTTGCGAATTTGTA
1 AAT-TGCGTTGCGAATTTGAA
*
820789 AATTGCGTTGCTAATT
1 AATTGCGTTGCGAATT
820805 ACCTATATAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 1 0.03
20 27 0.84
21 3 0.09
22 1 0.03
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.39
Consensus pattern (20 bp):
AATTGCGTTGCGAATTTGAA
Found at i:820855 original size:20 final size:20
Alignment explanation
Indices: 820830--820876 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
820820 CAGTACTATT
820830 GCAACGCGATTTACAAATTC
1 GCAACGCGATTTACAAATTC
* *
820850 GCAACGAGATTTTCAAATTC
1 GCAACGCGATTTACAAATTC
820870 GCAACGC
1 GCAACGC
820877 TAATTACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (20 bp):
GCAACGCGATTTACAAATTC
Found at i:820925 original size:77 final size:77
Alignment explanation
Indices: 820798--821086 Score: 506
Period size: 77 Copynumber: 3.8 Consensus size: 77
820788 AAATTGCGTT
* *
820798 GCTAATTACCTATATAGGTAAACAGTACTATTGCAACGCGATTTACAAATTCGCAACGAGATTTT
1 GCTAATTACCGATATAGGTAAACAGTACTATCGCAACGCGATTTACAAATTCGCAACGAGATTTT
820863 CAAATTCGCAAC
66 CAAATTCGCAAC
*
820875 GCTAATTACCGATATAGGTAAACAGTACTATCGCAACGCAATTTACAAATTCGCAACGAGATTTT
1 GCTAATTACCGATATAGGTAAACAGTACTATCGCAACGCGATTTACAAATTCGCAACGAGATTTT
*
820940 CAAATTTGCAAC
66 CAAATTCGCAAC
* * *
820952 GCTAATTACCGATATAGGTAAACAGTACTATCGCAACGCGATTTACAAATTCGCAATGCGATTTA
1 GCTAATTACCGATATAGGTAAACAGTACTATCGCAACGCGATTTACAAATTCGCAACGAGATTTT
821017 CAAATTCGCAAC
66 CAAATTCGCAAC
*
821029 GCTAATTACCGTTATAGGTAAACAGTACTATCGCAACGCGATTTACAAATTCGCAACG
1 GCTAATTACCGATATAGGTAAACAGTACTATCGCAACGCGATTTACAAATTCGCAACG
821087 CTAATTACCG
Statistics
Matches: 201, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 201 1.00
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.27
Consensus pattern (77 bp):
GCTAATTACCGATATAGGTAAACAGTACTATCGCAACGCGATTTACAAATTCGCAACGAGATTTT
CAAATTCGCAAC
Found at i:820930 original size:20 final size:20
Alignment explanation
Indices: 820905--820958 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
820895 AACAGTACTA
820905 TCGCAACGCAATTTACAAAT
1 TCGCAACGCAATTTACAAAT
*
820925 TCGCAACG-AGATTTTCAAAT
1 TCGCAACGCA-ATTTACAAAT
*
820945 TTGCAACGCTAATT
1 TCGCAACGC-AATT
820959 ACCGATATAG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
19 1 0.03
20 24 0.83
21 3 0.10
22 1 0.03
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (20 bp):
TCGCAACGCAATTTACAAAT
Found at i:821037 original size:20 final size:20
Alignment explanation
Indices: 820982--821030 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
820972 AACAGTACTA
820982 TCGCAACGCGATTTACAAAT
1 TCGCAACGCGATTTACAAAT
*
821002 TCGCAATGCGATTTACAAAT
1 TCGCAACGCGATTTACAAAT
821022 TCGCAACGC
1 TCGCAACGC
821031 TAATTACCGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (20 bp):
TCGCAACGCGATTTACAAAT
Found at i:821090 original size:57 final size:57
Alignment explanation
Indices: 821002--821111 Score: 202
Period size: 57 Copynumber: 1.9 Consensus size: 57
820992 ATTTACAAAT
* *
821002 TCGCAATGCGATTTACAAATTCGCAACGCTAATTACCGTTATAGGTAAACAGTACTA
1 TCGCAACGCGATTTACAAATTCGCAACGCTAATTACCGATATAGGTAAACAGTACTA
821059 TCGCAACGCGATTTACAAATTCGCAACGCTAATTACCGATATAGGTAAACAGT
1 TCGCAACGCGATTTACAAATTCGCAACGCTAATTACCGATATAGGTAAACAGT
821112 GTTGCGAAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 51 1.00
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.26
Consensus pattern (57 bp):
TCGCAACGCGATTTACAAATTCGCAACGCTAATTACCGATATAGGTAAACAGTACTA
Found at i:821170 original size:20 final size:20
Alignment explanation
Indices: 821145--821375 Score: 213
Period size: 20 Copynumber: 11.6 Consensus size: 20
821135 TAAACGCGCT
821145 TTGCGAATTTGACTTTCGCG
1 TTGCGAATTTGACTTTCGCG
* * *
821165 TTGCGAATTTTACTTTTGTG
1 TTGCGAATTTGACTTTCGCG
* ** *
821185 TTGCGAATTTAAAATTCAGTG
1 TTGCGAATTTGACTTTC-GCG
*
821206 TTGCGAATTTGACTATCGCG
1 TTGCGAATTTGACTTTCGCG
*
821226 TTGCGAATTTGAC-TTCTGTG
1 TTGCGAATTTGACTTTC-GCG
821246 TTGCGAATTTGAC-TTCAGCG
1 TTGCGAATTTGACTTTC-GCG
* *
821266 TTGCGAATTTGACTATCACG
1 TTGCGAATTTGACTTTCGCG
* *
821286 TTGCGAATTTGACTATCACG
1 TTGCGAATTTGACTTTCGCG
*
821306 TTGCGAATTTGACTTAT-GTG
1 TTGCGAATTTGACTT-TCGCG
* *
821326 TTGCGAATTTGACTCT-GTG
1 TTGCGAATTTGACTTTCGCG
*
821345 TTGCG-ATTT-ACATATTCGCA
1 TTGCGAATTTGAC-T-TTCGCG
821365 TTGCGAATTTG
1 TTGCGAATTTG
821376 GAAACTGGGT
Statistics
Matches: 177, Mismatches: 25, Indels: 16
0.81 0.11 0.07
Matches are distributed among these distances:
17 2 0.01
18 5 0.03
19 12 0.07
20 135 0.76
21 23 0.13
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.41
Consensus pattern (20 bp):
TTGCGAATTTGACTTTCGCG
Found at i:821289 original size:60 final size:60
Alignment explanation
Indices: 821145--821339 Score: 268
Period size: 60 Copynumber: 3.2 Consensus size: 60
821135 TAAACGCGCT
* * * * *
821145 TTGCGAATTTGACTTTCGCGTTGCGAATTTTACTTTTGTGTTGCGAATTTAAAATTCAGTG
1 TTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCTGTGTTGCGAATTT-GACTTCAGTG
*
821206 TTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCTGTGTTGCGAATTTGACTTCAGCG
1 TTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCTGTGTTGCGAATTTGACTTCAGTG
* **
821266 TTGCGAATTTGACTATCACGTTGCGAATTTGACTATC-ACGTTGCGAATTTGACTT-ATGTG
1 TTGCGAATTTGACTATCGCGTTGCGAATTTGACT-TCTGTGTTGCGAATTTGACTTCA-GTG
821326 TTGCGAATTTGACT
1 TTGCGAATTTGACT
821340 CTGTGTTGCG
Statistics
Matches: 122, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
59 1 0.01
60 72 0.59
61 49 0.40
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.41
Consensus pattern (60 bp):
TTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCTGTGTTGCGAATTTGACTTCAGTG
Found at i:825516 original size:39 final size:39
Alignment explanation
Indices: 825436--825519 Score: 123
Period size: 39 Copynumber: 2.2 Consensus size: 39
825426 TTTTCACCAT
* *
825436 GCTCCTCGGCTTTGTGCTCAAGGTAAGTCCTTATCATAG
1 GCTCCTCGGCTTTGTGCTCAAGGTAAGTCCTTACCACAG
* * *
825475 GCTCCTCGGCTTTGTGCTCAGGGTAAGTCTTTACCGCAG
1 GCTCCTCGGCTTTGTGCTCAAGGTAAGTCCTTACCACAG
825514 GCTCCT
1 GCTCCT
825520 TTGCTATGTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.14, C:0.29, G:0.25, T:0.32
Consensus pattern (39 bp):
GCTCCTCGGCTTTGTGCTCAAGGTAAGTCCTTACCACAG
Found at i:825530 original size:39 final size:39
Alignment explanation
Indices: 825436--825547 Score: 111
Period size: 39 Copynumber: 2.9 Consensus size: 39
825426 TTTTCACCAT
* * *
825436 GCTCCTCGGCTTTGTGCTCAAGGTAAGTCCTTATCATAG
1 GCTCCTCGGCTATGTGCTCAAGGTAAGTCCTTACCACAG
* * * *
825475 GCTCCTCGGCTTTGTGCTCAGGGTAAGTCTTTACCGCAG
1 GCTCCTCGGCTATGTGCTCAAGGTAAGTCCTTACCACAG
** *
825514 GCTCCTTTGCTATGTG--CAAGGATAAGACCTTACC
1 GCTCCTCGGCTATGTGCTCAAGG-TAAGTCCTTACC
825548 GTTTCACAGG
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
37 4 0.07
38 10 0.16
39 47 0.77
ACGTcount: A:0.18, C:0.27, G:0.24, T:0.31
Consensus pattern (39 bp):
GCTCCTCGGCTATGTGCTCAAGGTAAGTCCTTACCACAG
Found at i:825559 original size:43 final size:43
Alignment explanation
Indices: 825511--825852 Score: 486
Period size: 43 Copynumber: 8.0 Consensus size: 43
825501 GTCTTTACCG
*
825511 CAGGCTCCTTTGCTATGTGCAAGGATAAGACCTTACCGTTTCA
1 CAGGCTCCTTTGCTATGTGCAAGGATAAGACCTTACCGTTTCC
** *
825554 CAGGCTCCTTTGCTATGTGCAAGGATAAGACCTTATTGTTTAC
1 CAGGCTCCTTTGCTATGTGCAAGGATAAGACCTTACCGTTTCC
*
825597 CAGGCTCCTTTGCTATGTGCAATGATAAGACCTTACCGTTTCC
1 CAGGCTCCTTTGCTATGTGCAAGGATAAGACCTTACCGTTTCC
* * * *
825640 CAGGCTTCTTTTCTATGTACAAGGATAAGACCTTACAGTTTCC
1 CAGGCTCCTTTGCTATGTGCAAGGATAAGACCTTACCGTTTCC
* * * *
825683 CAGGCTCATTTGCTATGTGTAAGGCTAAGAACTTACCGTTTCC
1 CAGGCTCCTTTGCTATGTGCAAGGATAAGACCTTACCGTTTCC
* * * *
825726 CAGGCTTCTTTGCTATATGCAAGGATAAGACCTTACCATTTCT
1 CAGGCTCCTTTGCTATGTGCAAGGATAAGACCTTACCGTTTCC
* *
825769 CAGGCTCCTTTACTATGTGTAAGGATAAGACCTTACCGTTTCC
1 CAGGCTCCTTTGCTATGTGCAAGGATAAGACCTTACCGTTTCC
* * *
825812 CAGGCTCTTTTGCTATGTGTAAGGGTAAGACCTTACCGTTT
1 CAGGCTCCTTTGCTATGTGCAAGGATAAGACCTTACCGTTT
825853 TTGCAGGCTC
Statistics
Matches: 261, Mismatches: 38, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 261 1.00
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.34
Consensus pattern (43 bp):
CAGGCTCCTTTGCTATGTGCAAGGATAAGACCTTACCGTTTCC
Found at i:826692 original size:2 final size:2
Alignment explanation
Indices: 826685--826710 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
826675 TGTAGTTTTA
826685 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
826711 TAGTTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:827798 original size:30 final size:29
Alignment explanation
Indices: 827764--827829 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 29
827754 AGGATTTTTT
*
827764 TAAAAACAATATAAGAAATTCTTTTAGAAA
1 TAAAAAAAAT-TAAGAAATTCTTTTAGAAA
* *
827794 TAAAAAAAATTAAGACATTTTTTTAGAAA
1 TAAAAAAAATTAAGAAATTCTTTTAGAAA
827823 TAAAAAA
1 TAAAAAA
827830 TCAACAAAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 24 0.73
30 9 0.27
ACGTcount: A:0.59, C:0.05, G:0.06, T:0.30
Consensus pattern (29 bp):
TAAAAAAAATTAAGAAATTCTTTTAGAAA
Found at i:827842 original size:27 final size:28
Alignment explanation
Indices: 827785--827843 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
827775 TAAGAAATTC
* * * *
827785 TTTTAGAAATAAAAAAAATTAAGACATTT
1 TTTTAGAAAT-AAAAAAATCAACAAAGTT
827814 TTTTAGAAAT-AAAAAATCAACAAAGTT
1 TTTTAGAAATAAAAAAATCAACAAAGTT
827841 TTT
1 TTT
827844 ATAAATTTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 16 0.62
29 10 0.38
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.36
Consensus pattern (28 bp):
TTTTAGAAATAAAAAAATCAACAAAGTT
Found at i:827969 original size:15 final size:16
Alignment explanation
Indices: 827938--827971 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
827928 ATTTGTTAGA
827938 AATTTAAAAAATCTAAT
1 AATTTAAAAAA-CTAAT
827955 AATTTAAAAAA-TAAT
1 AATTTAAAAAACTAAT
827970 AA
1 AA
827972 AGGAATTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
17 11 0.65
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
AATTTAAAAAACTAAT
Found at i:828580 original size:114 final size:113
Alignment explanation
Indices: 828415--828877 Score: 452
Period size: 114 Copynumber: 4.1 Consensus size: 113
828405 GAAAAGGACA
* * *
828415 TGAATTGTTAAGATTCTCTGTCGTTTGAAATTATTATCGTCTAGGATCATCATTTTCTTACAGTA
1 TGAATAGTTAAGATTCTCTGTCATTTGAAATTATTAT-GTCTAGGATCATCATTTTCTTATAGT-
* * * *
828480 AT-CAGAAAGTTC-ATATTTGAATTGATGTTTCACTGCACATAAAATA-AAG
64 ATGAAGAAAGTTCTA-ATATGAAGTGATGTTTCACTGCAAATAAAA-AGAAG
* * * * *
828529 TGAATAGTTAATATTCTCTTTCATTTGAAATTATTACTGTCTCGGGTCATCATTTTCTTGTAGTA
1 TGAATAGTTAAGATTCTCTGTCATTTGAAATTATTA-TGTCTAGGATCATCATTTTCTTATAGTA
* * * * **
828594 TGAAGAATGTTTTAATATGAAGTGATGTTTCACTACAAAGAAAAAGACC
65 TGAAGAAAGTTCTAATATGAAGTGATGTTTCACTGCAAATAAAAAGAAG
*
828643 TGAATAGTTAGGATTCTCTGTCATTTGAAATTATTATTGTCTTA-GATCATCATTTTCTTATAGT
1 TGAATAGTTAAGATTCTCTGTCATTTGAAATTATTA-TGTC-TAGGATCATCATTTTCTTATAGT
* * * * * * *
828707 ATGAAGAAAGTTCTAATATGAGGTGATGTTTTATTGTAGATAAAAATATG
64 ATGAAGAAAGTTCTAATATGAAGTGATGTTTCACTGCAAATAAAAAGAAG
* * * * * * *
828757 TGAATAGTTAAGATTCTATATCATTTGAAATTATTATCGCCTCA-AATTATCATTTTCTTCTAAT
1 TGAATAGTTAAGATTCTCTGTCATTTGAAATTATTAT-GTCT-AGGATCATCATTTTCTTATAGT
* * * * *
828821 ATGAAGAAAGTTCTGATATGAGGTGATGTTTTACTGTAAA-GAAAAGAAAG
64 ATGAAGAAAGTTCTAATATGAAGTGATGTTTCACTGCAAATAAAAAG-AAG
828871 TGAATAG
1 TGAATAG
828878 GCTTGGATCA
Statistics
Matches: 290, Mismatches: 51, Indels: 16
0.81 0.14 0.04
Matches are distributed among these distances:
113 9 0.03
114 278 0.96
115 3 0.01
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (113 bp):
TGAATAGTTAAGATTCTCTGTCATTTGAAATTATTATGTCTAGGATCATCATTTTCTTATAGTAT
GAAGAAAGTTCTAATATGAAGTGATGTTTCACTGCAAATAAAAAGAAG
Found at i:828811 original size:228 final size:228
Alignment explanation
Indices: 828385--828865 Score: 558
Period size: 228 Copynumber: 2.1 Consensus size: 228
828375 ATGATTTGAG
* * * *
828385 GTGATGTTTCACGACTAAAAGAAAAGGACATGAATTGTTAAGATTCTCTGTCGTTTGAAATTATT
1 GTGATGTTTCACTAC--AAAGAAAAAGACATGAATAGTTAAGATTCTCTGTCATTTGAAATTATT
* * *
828450 ATCGTCTAGGATCATCATTTTCTTACAGTAATCAGAAAGTTCATATTTGAATTGATGTTTCACTG
64 ATCGTCTAGGATCATCATTTTCTTACAGTAATAAGAAAGTTCATATATGAAGTGATGTTTCACTG
* * * * ***
828515 CACATAAAATAAAGTGAATAGTTAATATTCTCTTTCATTTGAAATTATTACTGTCTCGGGTCATC
129 CACATAAAATAAAGTGAATAGTTAAGATTCTATATCATTTGAAATTATTACTGCCTCAAATCATC
* * * *
828580 ATTTTCTTGTAGTATGAAGAATGTTTTAATATGAA
194 ATTTTCTTCTAATATGAAGAAAGTTCTAATATGAA
* *
828615 GTGATGTTTCACTACAAAGAAAAAGACCTGAATAGTTAGGATTCTCTGTCATTTGAAATTATTAT
1 GTGATGTTTCACTACAAAGAAAAAGACATGAATAGTTAAGATTCTCTGTCATTTGAAATTATTAT
* * * * *
828680 TGTCTTA-GATCATCATTTTCTTATAGT-ATGAAGAAAGTTC-TAATATGAGGTGATGTTTTATT
66 CGTC-TAGGATCATCATTTTCTTACAGTAAT-AAGAAAGTTCAT-ATATGAAGTGATGTTTCACT
* * * *
828742 GTAGATAAAA-ATATGTGAATAGTTAAGATTCTATATCATTTGAAATTATTA-TCGCCTCAAATT
128 GCACATAAAATA-AAGTGAATAGTTAAGATTCTATATCATTTGAAATTATTACT-GCCTCAAATC
* *
828805 ATCATTTTCTTCTAATATGAAGAAAGTTCTGATATGAG
191 ATCATTTTCTTCTAATATGAAGAAAGTTCTAATATGAA
* **
828843 GTGATGTTTTACTGTAAAGAAAA
1 GTGATGTTTCACTACAAAGAAAA
828866 GAAAGTGAAT
Statistics
Matches: 212, Mismatches: 34, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
227 5 0.02
228 191 0.90
229 2 0.01
230 14 0.07
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (228 bp):
GTGATGTTTCACTACAAAGAAAAAGACATGAATAGTTAAGATTCTCTGTCATTTGAAATTATTAT
CGTCTAGGATCATCATTTTCTTACAGTAATAAGAAAGTTCATATATGAAGTGATGTTTCACTGCA
CATAAAATAAAGTGAATAGTTAAGATTCTATATCATTTGAAATTATTACTGCCTCAAATCATCAT
TTTCTTCTAATATGAAGAAAGTTCTAATATGAA
Found at i:835316 original size:18 final size:18
Alignment explanation
Indices: 835293--835337 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 18
835283 ATTTGAACAT
835293 ATAATATAAATAA-AATG
1 ATAATATAAATAATAATG
835310 --AATA-ATAATAATAATG
1 ATAATATA-AATAATAATG
835326 ATAATATAAATA
1 ATAATATAAATA
835338 TAAAAACATA
Statistics
Matches: 23, Mismatches: 0, Indels: 9
0.72 0.00 0.28
Matches are distributed among these distances:
14 1 0.04
15 9 0.39
16 4 0.17
18 8 0.35
19 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (18 bp):
ATAATATAAATAATAATG
Found at i:835361 original size:2 final size:2
Alignment explanation
Indices: 835354--835397 Score: 65
Period size: 2 Copynumber: 22.5 Consensus size: 2
835344 CATATAAAAC
835354 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TCA TA T- TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA
835395 TA T
1 TA T
835398 TTACATAGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
1 2 0.05
2 35 0.90
3 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:835466 original size:37 final size:36
Alignment explanation
Indices: 835425--835509 Score: 100
Period size: 35 Copynumber: 2.4 Consensus size: 36
835415 ACCTGCATAT
* * * * *
835425 TATATTATATATCCATGTATATATGTATTTTTAATAC
1 TATATTATATAT-CATATATATATATATATTCAAAAC
*
835462 TATATTATATAT-ATATATATATATATATTCAAAAT
1 TATATTATATATCATATATATATATATATTCAAAAC
835497 TATATTATATATC
1 TATATTATATATC
835510 TACTTATAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
35 29 0.71
37 12 0.29
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.51
Consensus pattern (36 bp):
TATATTATATATCATATATATATATATATTCAAAAC
Found at i:835548 original size:28 final size:27
Alignment explanation
Indices: 835469--835568 Score: 91
Period size: 28 Copynumber: 3.7 Consensus size: 27
835459 TACTATATTA
*
835469 TATATATATATATATATATATTCAAAA-
1 TATATATATATATATATAT-TTAAAAAC
* * *
835496 T-TATAT-TATATATCTACTTATAAAC
1 TATATATATATATATATATTTAAAAAC
*
835521 TATATACTATATATATTTATTTAAAAAC
1 TATATA-TATATATATATATTTAAAAAC
*
835549 CATATACTATATAT-TATATT
1 TATATA-TATATATATATATT
835569 ATATATTTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
24 5 0.08
25 10 0.17
26 9 0.15
27 7 0.12
28 29 0.48
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (27 bp):
TATATATATATATATATATTTAAAAAC
Found at i:836321 original size:134 final size:133
Alignment explanation
Indices: 836079--836434 Score: 423
Period size: 134 Copynumber: 2.7 Consensus size: 133
836069 GAAAAATGGC
* * * *
836079 TTGCTCCACTACTCTTTAGGGGAGATCAGACAC--GTAATTTTGATTCACTTTGCTGCTCTTCAA
1 TTGCTCTACTACTCTTTAGGGGAGATCAGACTCGAGAAATTTTGATCCACTTTGCTGCTCTTCAA
* * ** * *
836142 GGAAAATTGAATAAGAA-TCAATTTGCTTCGCTGCTCTTCATGAAGACCAAATCTAAAAGAA-AG
66 GGAAGATTGAAT-CGAACTTGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTAAAAGAATA-
836205 AGAAT
129 AGAAT
* *
836210 TTGCTCTACTACTCTTTAGGGGAGATCATACTCGAGAATATTTTGATCCACTTTGCTGCTCTTTA
1 TTGCTCTACTACTCTTTAGGGGAGATCAGACTCGAGAA-ATTTTGATCCACTTTGCTGCTCTTCA
* * * *
836275 GGGAAGATTGAATCGAACTTGATTTGCTTCACTGCTCTTTAGGAAGACCGAATCTGAAAGAATAA
65 AGGAAGATTGAATCGAACTTGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTAAAAGAATAA
836340 GAAT
130 GAAT
* * * * * * *
836344 CTACTTTGCTACTCTTTAGGGGATATCAGACTCGAGAAAAATTTGATCCACTTCGCTGCTCTTCA
1 TTGCTCTACTACTCTTTAGGGGAGATCAGACTCGAG-AAATTTTGATCCACTTTGCTGCTCTTCA
* *
836409 AGGAAGATTAAATCGATCTTGATTTG
65 AGGAAGATTGAATCGAACTTGATTTG
836435 TTTATCTTAT
Statistics
Matches: 191, Mismatches: 28, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
131 30 0.16
133 5 0.03
134 153 0.80
135 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (133 bp):
TTGCTCTACTACTCTTTAGGGGAGATCAGACTCGAGAAATTTTGATCCACTTTGCTGCTCTTCAA
GGAAGATTGAATCGAACTTGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTAAAAGAATAAG
AAT
Found at i:853727 original size:146 final size:146
Alignment explanation
Indices: 853551--853845 Score: 572
Period size: 146 Copynumber: 2.0 Consensus size: 146
853541 ATAAATAGAA
853551 ACCCTAATGGGTTTTAGGTTTTTTTGGGTCATGATCTGCTGGGCTTGATCCAGCTCGGGTTTAGC
1 ACCCTAATGGGTTTTAGGTTTTTTTGGGTCATGATCTGCTGGGCTTGATCCAGCTCGGGTTTAGC
853616 CACTTTTTGGATCTCTCAACCGGACTCCCTCAACCAGGCTGGCACTGCTGGGTCAGGCTTGTGAG
66 CACTTTTTGGATCTCTCAACCGGACTCCCTCAACCAGGCTGGCACTGCTGGGTCAGGCTTGTGAG
853681 CCTGGACACCTATCGT
131 CCTGGACACCTATCGT
*
853697 ACCCTAATGGGTTTTAGGTTTTTTTTGGTCATGATCTGCTGGGCTTGATCCAGCTCGGGTTTAGC
1 ACCCTAATGGGTTTTAGGTTTTTTTGGGTCATGATCTGCTGGGCTTGATCCAGCTCGGGTTTAGC
*
853762 CACTTTTTGGATCTCTCAATCGGACTCCCTCAACCAGGCTGGCACTGCTGGGTCAGGCTTGTGAG
66 CACTTTTTGGATCTCTCAACCGGACTCCCTCAACCAGGCTGGCACTGCTGGGTCAGGCTTGTGAG
853827 CCTGGACACCTATCGT
131 CCTGGACACCTATCGT
853843 ACC
1 ACC
853846 ATTGGTCTAT
Statistics
Matches: 147, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 147 1.00
ACGTcount: A:0.16, C:0.26, G:0.26, T:0.32
Consensus pattern (146 bp):
ACCCTAATGGGTTTTAGGTTTTTTTGGGTCATGATCTGCTGGGCTTGATCCAGCTCGGGTTTAGC
CACTTTTTGGATCTCTCAACCGGACTCCCTCAACCAGGCTGGCACTGCTGGGTCAGGCTTGTGAG
CCTGGACACCTATCGT
Found at i:854110 original size:32 final size:34
Alignment explanation
Indices: 854072--854143 Score: 98
Period size: 32 Copynumber: 2.2 Consensus size: 34
854062 TATATTCAAA
854072 ACTATATTATATATCTAT-TTTTAAAACTATA-T
1 ACTATATTATATATCTATATTTTAAAACTATACT
* *
854104 ACTATA-TATATATTTATATTTTTAAACTATACT
1 ACTATATTATATATCTATATTTTAAAACTATACT
854137 A-TATATT
1 ACTATATT
854144 TATTTAAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
31 10 0.29
32 22 0.63
33 3 0.09
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.51
Consensus pattern (34 bp):
ACTATATTATATATCTATATTTTAAAACTATACT
Found at i:854117 original size:27 final size:26
Alignment explanation
Indices: 853974--854118 Score: 99
Period size: 25 Copynumber: 5.7 Consensus size: 26
853964 TGATAATATA
* *
853974 TATATATATATATATCATATT-ATAA-
1 TATATATATATATAT-ATTTTCAAAAC
* *
853999 TATAT-T-TACATAGATTTTCAAAAC
1 TATATATATATATATATTTTCAAAAC
* * **
854023 T-TGTATACTATAT-TATTTATC-TATG
1 TATATATA-TATATATATTT-TCAAAAC
*
854048 TATATATATATATATATATTCAAAAC
1 TATATATATATATATATTTTCAAAAC
* *
854074 TATAT-TATATATCTATTTTTAAAAC
1 TATATATATATATATATTTTCAAAAC
854099 TATATACTATATATATATTT
1 TATATA-TATATATATATTT
854119 ATATTTTTAA
Statistics
Matches: 90, Mismatches: 19, Indels: 20
0.70 0.15 0.16
Matches are distributed among these distances:
22 4 0.04
23 10 0.11
24 3 0.03
25 40 0.44
26 21 0.23
27 12 0.13
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (26 bp):
TATATATATATATATATTTTCAAAAC
Found at i:854167 original size:32 final size:32
Alignment explanation
Indices: 854095--854181 Score: 106
Period size: 30 Copynumber: 2.8 Consensus size: 32
854085 TCTATTTTTA
* ***
854095 AAACTATATACTATATATATATTTATATTTTT
1 AAACTATATACTATATATATATTTAAATCCAT
*
854127 AAAC--TATACTATATATTTATTTAAATCCAT
1 AAACTATATACTATATATATATTTAAATCCAT
*
854157 ATACTATATACTATATATATATTTA
1 AAACTATATACTATATATATATTTA
854182 TATACTTTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
30 24 0.52
32 22 0.48
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (32 bp):
AAACTATATACTATATATATATTTAAATCCAT
Found at i:855050 original size:3 final size:3
Alignment explanation
Indices: 855042--855102 Score: 113
Period size: 3 Copynumber: 20.0 Consensus size: 3
855032 GATATTTGAT
855042 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
855090 TTA TTA TATA TTA
1 TTA TTA T-TA TTA
855103 ATTTTTTTCA
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 54 0.95
4 3 0.05
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:856477 original size:21 final size:21
Alignment explanation
Indices: 856451--856507 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
856441 CAAAGAGTTT
****
856451 GGGATCGATCCTTTTTGGTAA
1 GGGATCGATCCTTTCCCCTAA
* *
856472 GGGATCAATCATTTCCCCTAA
1 GGGATCGATCCTTTCCCCTAA
856493 GGGATCGATCCTTTC
1 GGGATCGATCCTTTC
856508 TGGAAAAATT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (21 bp):
GGGATCGATCCTTTCCCCTAA
Found at i:857376 original size:22 final size:22
Alignment explanation
Indices: 857348--857407 Score: 68
Period size: 25 Copynumber: 2.6 Consensus size: 22
857338 TAATTTTATA
857348 TATATTAACTTAAAA-ATAGTTT
1 TATATTAACTTAAAATATA-TTT
857370 TATATTAACTTATTAAATATATTT
1 TATATTAACTTA--AAATATATTT
*
857394 CATTATTAACTTAA
1 TA-TATTAACTTAA
857408 TTTATAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
22 12 0.36
23 1 0.03
24 7 0.21
25 13 0.39
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (22 bp):
TATATTAACTTAAAATATATTT
Found at i:860548 original size:3 final size:3
Alignment explanation
Indices: 860540--860564 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
860530 GAATAGGGTT
860540 TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG T
860565 ATCTAGTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:863475 original size:31 final size:31
Alignment explanation
Indices: 863432--863493 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
863422 GTTTAAATTT
*
863432 ATATTTAAAAACATTAATTCAAATAGAAATA
1 ATATTTAAAAACATTAATTCAAATACAAATA
* *
863463 ATATTTACAAACATTCATTCAAATACAAATA
1 ATATTTAAAAACATTAATTCAAATACAAATA
863494 TGCAAGAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.55, C:0.11, G:0.02, T:0.32
Consensus pattern (31 bp):
ATATTTAAAAACATTAATTCAAATACAAATA
Found at i:888544 original size:21 final size:21
Alignment explanation
Indices: 888502--888545 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
888492 ACTTCGGGAG
*
888502 CTAGTTCCTCACGAGCTGCTC
1 CTAGTTCCTCACGAGCTCCTC
* *
888523 CTAGTTCCTCTCGTGCTCCTC
1 CTAGTTCCTCACGAGCTCCTC
888544 CT
1 CT
888546 CCTCCTCCGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.09, C:0.41, G:0.16, T:0.34
Consensus pattern (21 bp):
CTAGTTCCTCACGAGCTCCTC
Found at i:889670 original size:45 final size:46
Alignment explanation
Indices: 889614--889721 Score: 134
Period size: 46 Copynumber: 2.4 Consensus size: 46
889604 TGCACTAATC
889614 CATGCATCGATGCACCATGA-ATTAAATTG-AACATCGAATGCATTT
1 CATGCATCGATGCACCATGAGATTAAA-TGAAACATCGAATGCATTT
**
889659 CATGCATCGATGCA-C-TGAGGATTTTATGAAAACATCGAATGCATTT
1 CATGCATCGATGCACCATGA-GATTAAATG-AAACATCGAATGCATTT
*
889705 GATGCATCGATGCACCA
1 CATGCATCGATGCACCA
889722 GCCATGCATC
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
43 3 0.06
44 3 0.06
45 18 0.33
46 29 0.54
47 1 0.02
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGCATCGATGCACCATGAGATTAAATGAAACATCGAATGCATTT
Found at i:889771 original size:64 final size:65
Alignment explanation
Indices: 889659--889783 Score: 191
Period size: 64 Copynumber: 1.9 Consensus size: 65
889649 GAATGCATTT
* *
889659 CATGCATCGATGCACTGAGGATTTTATGAAAACATCGAATGCATTTGATGCATCGATGCACCAGC
1 CATGCATCGATGCACTCAGGATTTTATGAAAACATCGAATGCACTTGATGCATCGATGCACCAGC
* *
889724 CATGCATCGATGCACTCTGGCTATTT-TG-AAACATCGAATGCACTTGATGCATCGATGCAC
1 CATGCATCGATGCACTCAGGAT-TTTATGAAAACATCGAATGCACTTGATGCATCGATGCAC
889784 TCTTAGTGCA
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
64 31 0.56
65 21 0.38
66 3 0.05
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (65 bp):
CATGCATCGATGCACTCAGGATTTTATGAAAACATCGAATGCACTTGATGCATCGATGCACCAGC
Found at i:889783 original size:17 final size:19
Alignment explanation
Indices: 889755--889803 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
889745 TATTTTGAAA
889755 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
889773 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
889792 CACCGATGCACT
1 CATCGATGCACT
889804 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:894622 original size:17 final size:17
Alignment explanation
Indices: 894596--894645 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 17
894586 TAATAATGTA
894596 ATATTT-ATATTTATTT
1 ATATTTAATATTTATTT
*
894612 ATATTTAATATATATTT
1 ATATTTAATATTTATTT
894629 AGTATTCATAATATTTA
1 A-TATT--TAATATTTA
894646 GTATATTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 6 0.21
17 10 0.36
18 4 0.14
20 8 0.29
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (17 bp):
ATATTTAATATTTATTT
Found at i:899483 original size:34 final size:34
Alignment explanation
Indices: 899424--899490 Score: 93
Period size: 34 Copynumber: 1.9 Consensus size: 34
899414 TTCTTGAGAG
899424 TTGTTTTCTCCTTTTTATCAAGAGAGAA-TTGTTA
1 TTGTTTTCTCCTTTTTATC-AGAGAGAAGTTGTTA
899458 TTGTTTTCTCCTTTTTAGATC-GAGAGAAGTTGT
1 TTGTTTTCTCCTTTTT--ATCAGAGAGAAGTTGT
899491 AATTCCTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
34 23 0.77
35 4 0.13
36 3 0.10
ACGTcount: A:0.21, C:0.12, G:0.18, T:0.49
Consensus pattern (34 bp):
TTGTTTTCTCCTTTTTATCAGAGAGAAGTTGTTA
Found at i:899915 original size:22 final size:22
Alignment explanation
Indices: 899890--899940 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
899880 TGTGGAAATT
*
899890 GAAGATGAAGGTCATCCTAAGG
1 GAAGATGAAGGTCATCATAAGG
*
899912 GAAGATGAAGTTCATCATAAGG
1 GAAGATGAAGGTCATCATAAGG
899934 GAAGATG
1 GAAGATG
899941 GTTGTCTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.39, C:0.10, G:0.31, T:0.20
Consensus pattern (22 bp):
GAAGATGAAGGTCATCATAAGG
Found at i:901787 original size:24 final size:23
Alignment explanation
Indices: 901740--901802 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 23
901730 CATTTATTTT
*
901740 TTTAAATATAATAATATTACATA
1 TTTAATTATAATAATATTACATA
* *
901763 TTTAATTATTAATAATTTTATATA
1 TTTAATTA-TAATAATATTACATA
*
901787 TTAAATTA-AACTAATA
1 TTTAATTATAA-TAATA
901803 AAATTAAAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
22 2 0.06
23 11 0.33
24 20 0.61
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (23 bp):
TTTAATTATAATAATATTACATA
Found at i:902279 original size:27 final size:27
Alignment explanation
Indices: 902233--902285 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
902223 TATTCTAAAG
902233 AGAGTTTTTCTTCTTCTTGA-TCAACT
1 AGAGTTTTTCTTCTTCTTGATTCAACT
*
902259 AGAGTTTTTAC-TCTATTTTGATTCAAC
1 AGAGTTTTT-CTTCT-TCTTGATTCAAC
902286 AATTGGTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 12 0.52
27 6 0.26
28 5 0.22
ACGTcount: A:0.23, C:0.17, G:0.11, T:0.49
Consensus pattern (27 bp):
AGAGTTTTTCTTCTTCTTGATTCAACT
Found at i:905160 original size:29 final size:29
Alignment explanation
Indices: 905126--905184 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
905116 CCTAAATTAA
905126 TTTGATGTCATTGCGTACATCAATTTAGT
1 TTTGATGTCATTGCGTACATCAATTTAGT
*
905155 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCGTACATCAATTTAGT
905184 T
1 T
905185 AGGTGAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.14, G:0.15, T:0.47
Consensus pattern (29 bp):
TTTGATGTCATTGCGTACATCAATTTAGT
Found at i:907366 original size:21 final size:21
Alignment explanation
Indices: 907342--907407 Score: 86
Period size: 21 Copynumber: 3.3 Consensus size: 21
907332 TGACCGGTCA
*
907342 CGACCCGTTTACCCGTTGACT
1 CGACCCGTTTACCCGTTGACC
*
907363 CGACCCGTTTACCCGTTTACC
1 CGACCCGTTTACCCGTTGACC
907384 CGACCCG---A-CCGTTGACC
1 CGACCCGTTTACCCGTTGACC
907401 CGACCCG
1 CGACCCG
907408 ACCAGTTGAC
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
17 15 0.36
18 1 0.02
21 26 0.62
ACGTcount: A:0.15, C:0.44, G:0.20, T:0.21
Consensus pattern (21 bp):
CGACCCGTTTACCCGTTGACC
Found at i:907401 original size:17 final size:17
Alignment explanation
Indices: 907375--907418 Score: 70
Period size: 17 Copynumber: 2.5 Consensus size: 17
907365 ACCCGTTTAC
*
907375 CCGTTTACCCGACCCGA
1 CCGTTGACCCGACCCGA
907392 CCGTTGACCCGACCCGA
1 CCGTTGACCCGACCCGA
907409 CCAGTTGACC
1 CC-GTTGACC
907419 GTTGACCGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 18 0.72
18 7 0.28
ACGTcount: A:0.18, C:0.45, G:0.20, T:0.16
Consensus pattern (17 bp):
CCGTTGACCCGACCCGA
Found at i:907468 original size:29 final size:29
Alignment explanation
Indices: 907426--907586 Score: 177
Period size: 29 Copynumber: 5.7 Consensus size: 29
907416 ACCGTTGACC
* *** *
907426 GGTGCTATTCTGGGAATTAATTCGGTTTT
1 GGTGCTATTTTGGGAATTAATTCGAAATA
907455 GGTGCTATTTTGGGAATTAATTCGAAATA
1 GGTGCTATTTTGGGAATTAATTCGAAATA
* *
907484 GGTGCTATTTTGGTAATT-TTTCGAAA-A
1 GGTGCTATTTTGGGAATTAATTCGAAATA
* * *
907511 -GTGATATTCTGGGAATTAATTCGAAATT
1 GGTGCTATTTTGGGAATTAATTCGAAATA
*
907539 GGTGCTATTTTGGGAAATAATTCGAAA-A
1 GGTGCTATTTTGGGAATTAATTCGAAATA
*
907567 GGGTGCTATTTTGGTAATTA
1 -GGTGCTATTTTGGGAATTA
907587 TTTTAAAAGG
Statistics
Matches: 110, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 14 0.13
27 8 0.07
28 7 0.06
29 81 0.74
ACGTcount: A:0.27, C:0.07, G:0.25, T:0.40
Consensus pattern (29 bp):
GGTGCTATTTTGGGAATTAATTCGAAATA
Found at i:907595 original size:84 final size:84
Alignment explanation
Indices: 907431--907585 Score: 258
Period size: 84 Copynumber: 1.8 Consensus size: 84
907421 TGACCGGTGC
*** *
907431 TATTCTGGGAATTAATTCGGTTTTGGTGCTATTTTGGGAATTAATTCGAAATAGGTGCTATTTTG
1 TATTCTGGGAATTAATTCGAAATTGGTGCTATTTTGGGAAATAATTCGAAATAGGTGCTATTTTG
907496 GTAATTTTTCGAAAAGTGA
66 GTAATTTTTCGAAAAGTGA
907515 TATTCTGGGAATTAATTCGAAATTGGTGCTATTTTGGGAAATAATTCGAAA-AGGGTGCTATTTT
1 TATTCTGGGAATTAATTCGAAATTGGTGCTATTTTGGGAAATAATTCGAAATA-GGTGCTATTTT
907579 GGTAATT
65 GGTAATT
907586 ATTTTAAAAG
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
83 1 0.02
84 65 0.98
ACGTcount: A:0.28, C:0.07, G:0.24, T:0.41
Consensus pattern (84 bp):
TATTCTGGGAATTAATTCGAAATTGGTGCTATTTTGGGAAATAATTCGAAATAGGTGCTATTTTG
GTAATTTTTCGAAAAGTGA
Found at i:914156 original size:12 final size:12
Alignment explanation
Indices: 914139--914166 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
914129 TTGGAGAAGT
914139 AAAACAAAAAAC
1 AAAACAAAAAAC
914151 AAAACAAAAAAC
1 AAAACAAAAAAC
914163 AAAA
1 AAAA
914167 TGTAGCGTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAACAAAAAAC
Found at i:914818 original size:11 final size:11
Alignment explanation
Indices: 914804--914829 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
914794 AAATATTTAA
914804 TATATATTATT
1 TATATATTATT
914815 TATATATTATT
1 TATATATTATT
914826 TATA
1 TATA
914830 AATTTCAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TATATATTATT
Found at i:917184 original size:30 final size:30
Alignment explanation
Indices: 917150--917263 Score: 165
Period size: 30 Copynumber: 3.8 Consensus size: 30
917140 AGACTGCCTT
* * * *
917150 CCAGAGGGCTTAATGTTAGAGGTCATACGG
1 CCAGAGGACTTAATGCTAGAGGCCATACTG
*
917180 CCAGAGGACTTAATGCTAGAGGCCTTACTG
1 CCAGAGGACTTAATGCTAGAGGCCATACTG
* *
917210 CCAGAGGACTTGATGCTAGAAGCCATACTG
1 CCAGAGGACTTAATGCTAGAGGCCATACTG
917240 CCAGAGGACTTAATGCTAGAGGCC
1 CCAGAGGACTTAATGCTAGAGGCC
917264 TTGGGTTTCT
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 74 1.00
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (30 bp):
CCAGAGGACTTAATGCTAGAGGCCATACTG
Found at i:917200 original size:15 final size:15
Alignment explanation
Indices: 917182--917261 Score: 79
Period size: 15 Copynumber: 5.3 Consensus size: 15
917172 TCATACGGCC
917182 AGAGGACTTAATGCT
1 AGAGGACTTAATGCT
* * *
917197 AGAGGCCTTACTGCC
1 AGAGGACTTAATGCT
*
917212 AGAGGACTTGATGCT
1 AGAGGACTTAATGCT
* * * * *
917227 AGAAGCCATACTGCC
1 AGAGGACTTAATGCT
917242 AGAGGACTTAATGCT
1 AGAGGACTTAATGCT
917257 AGAGG
1 AGAGG
917262 CCTTGGGTTT
Statistics
Matches: 47, Mismatches: 18, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
15 47 1.00
ACGTcount: A:0.30, C:0.20, G:0.29, T:0.21
Consensus pattern (15 bp):
AGAGGACTTAATGCT
Found at i:922620 original size:120 final size:120
Alignment explanation
Indices: 922407--922647 Score: 446
Period size: 120 Copynumber: 2.0 Consensus size: 120
922397 GTTTGTCCTT
922407 CCCCAGAACTCTGCCCAAACTGATCAGGTCCAGGATTTGATCCTTGCCGAAAACTCTGTTCATTG
1 CCCCAGAACTCTGCCCAAACTGATCAGGTCCAGGATTTGATCCTTGCCGAAAACTCTGTTCATTG
**
922472 GCAGGATTTGCCCCTCGCTCAAAGTTCTGCCCATAGCTAGGATTCGGTCCCTGCC
66 GCAGGATTCACCCCTCGCTCAAAGTTCTGCCCATAGCTAGGATTCGGTCCCTGCC
*
922527 CCCCAGAACTCTGCCCAAACTGATCAGGTCCAGGATTTGATCCTTTCCGAAAACTCTGTTCATTG
1 CCCCAGAACTCTGCCCAAACTGATCAGGTCCAGGATTTGATCCTTGCCGAAAACTCTGTTCATTG
*
922592 GCAGGATTCACCTCTCGCTCAAAGTTCTGCCCATAGCTAGGATTCGGTCCCTGCC
66 GCAGGATTCACCCCTCGCTCAAAGTTCTGCCCATAGCTAGGATTCGGTCCCTGCC
922647 C
1 C
922648 ATATCCAGGA
Statistics
Matches: 117, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 117 1.00
ACGTcount: A:0.21, C:0.33, G:0.20, T:0.26
Consensus pattern (120 bp):
CCCCAGAACTCTGCCCAAACTGATCAGGTCCAGGATTTGATCCTTGCCGAAAACTCTGTTCATTG
GCAGGATTCACCCCTCGCTCAAAGTTCTGCCCATAGCTAGGATTCGGTCCCTGCC
Found at i:922650 original size:24 final size:24
Alignment explanation
Indices: 922618--922746 Score: 213
Period size: 24 Copynumber: 5.4 Consensus size: 24
922608 GCTCAAAGTT
* * * *
922618 CTGCCCATAGCTAGGATTCGGTCC
1 CTGCCCATATCCAGGATTTGGCCC
*
922642 CTGCCCATATCCAGGATTCGGCCC
1 CTGCCCATATCCAGGATTTGGCCC
922666 CTGCCCATATCCAGGATTTGGCCC
1 CTGCCCATATCCAGGATTTGGCCC
922690 CTGCCCATATCCAGGATTTGGCCC
1 CTGCCCATATCCAGGATTTGGCCC
922714 CTGCCCATATCCAGGATTTGGCCC
1 CTGCCCATATCCAGGATTTGGCCC
922738 CTGCCCATA
1 CTGCCCATA
922747 ATTCCCACTT
Statistics
Matches: 101, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 101 1.00
ACGTcount: A:0.17, C:0.38, G:0.21, T:0.24
Consensus pattern (24 bp):
CTGCCCATATCCAGGATTTGGCCC
Found at i:923043 original size:105 final size:104
Alignment explanation
Indices: 922847--923057 Score: 305
Period size: 105 Copynumber: 2.0 Consensus size: 104
922837 GAAGTCCCTT
* * *
922847 TGTCGTCCCGGATTATAATTTCCCTGCCCTCCTTGATTGTAACTGCCCTGGTACGAAGGAACACC
1 TGTCGTCCAGAATTATAATTTCCCTGCCCTCCTTGATTGTAACCGCCCTGGTACGAAGGAACACC
* *
922912 TCCTCTAGGAGCATAATCTCTGTTGTTAATTGGTGGCTGC
66 TCCTCTAGGAGCATAACCTCTATTGTTAA-TGGTGGCTGC
* * * *
922952 TGTCGTCCAGAATTATAATTTCCCTGCCCTCCTTGGTTGTAGCCGCCCTGGTATGAAGGATCACC
1 TGTCGTCCAGAATTATAATTTCCCTGCCCTCCTTGATTGTAACCGCCCTGGTACGAAGGAACACC
* * *
923017 TCCTCTGGGAGGATAACCTCTATTGTTCATGGTGGCTGC
66 TCCTCTAGGAGCATAACCTCTATTGTTAATGGTGGCTGC
923056 TG
1 TG
923058 CCCGTAATTT
Statistics
Matches: 94, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
104 12 0.13
105 82 0.87
ACGTcount: A:0.18, C:0.27, G:0.23, T:0.32
Consensus pattern (104 bp):
TGTCGTCCAGAATTATAATTTCCCTGCCCTCCTTGATTGTAACCGCCCTGGTACGAAGGAACACC
TCCTCTAGGAGCATAACCTCTATTGTTAATGGTGGCTGC
Found at i:924470 original size:17 final size:17
Alignment explanation
Indices: 924448--924482 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
924438 AGAAAAATCA
924448 ATTTAATTTTTTACCAT
1 ATTTAATTTTTTACCAT
924465 ATTTAATTTTTTACCAT
1 ATTTAATTTTTTACCAT
924482 A
1 A
924483 AAATTAGACG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTAATTTTTTACCAT
Found at i:925004 original size:32 final size:32
Alignment explanation
Indices: 924949--925023 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
924939 TAATAGGACT
924949 TAATTGA-TTTTTTTAATTAAGTTCGAG-GATC
1 TAATTGATTTTTTTTAATTAAGTTCGAGAG-TC
* * *
924980 TGATTGATTTTTTTTAGTTGAGTTCGAGAGTC
1 TAATTGATTTTTTTTAATTAAGTTCGAGAGTC
925012 TAATT-ATTTTTT
1 TAATTGATTTTTT
925024 ATCAAAAACT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
31 13 0.34
32 24 0.63
33 1 0.03
ACGTcount: A:0.24, C:0.05, G:0.17, T:0.53
Consensus pattern (32 bp):
TAATTGATTTTTTTTAATTAAGTTCGAGAGTC
Found at i:925713 original size:13 final size:13
Alignment explanation
Indices: 925695--925728 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
925685 TCTTTATGCC
925695 TATATATTACATG
1 TATATATTACATG
*
925708 TATATATTATATG
1 TATATATTACATG
925721 TAATATAT
1 T-ATATAT
925729 GTTTTTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (13 bp):
TATATATTACATG
Found at i:925757 original size:14 final size:14
Alignment explanation
Indices: 925740--925789 Score: 57
Period size: 14 Copynumber: 3.5 Consensus size: 14
925730 TTTTTTAAAA
*
925740 TATTTTTAATTTTT
1 TATTTATAATTTTT
*
925754 TA-TTAGTAATTTAT
1 TATTTA-TAATTTTT
925768 TATTTATAATTTTT
1 TATTTATAATTTTT
925782 TATCTTAT
1 TAT-TTAT
925790 GATATATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 2 0.07
14 21 0.70
15 7 0.23
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (14 bp):
TATTTATAATTTTT
Found at i:928663 original size:30 final size:31
Alignment explanation
Indices: 928627--928703 Score: 113
Period size: 29 Copynumber: 2.5 Consensus size: 31
928617 TTGATTTTGA
928627 AAAACTTACTCCCCCTTACTATAGCACATC-
1 AAAACTTACTCCCCCTTACTATAGCACATCT
928657 AAAACTTACT-CCCCTTACTATAGCACATCT
1 AAAACTTACTCCCCCTTACTATAGCACATCT
* * *
928687 TAAATTTTCTCCCCCTT
1 AAAACTTACTCCCCCTT
928704 TTGTTAAATC
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
29 19 0.45
30 17 0.40
31 6 0.14
ACGTcount: A:0.30, C:0.35, G:0.03, T:0.32
Consensus pattern (31 bp):
AAAACTTACTCCCCCTTACTATAGCACATCT
Found at i:930813 original size:13 final size:13
Alignment explanation
Indices: 930797--930864 Score: 57
Period size: 13 Copynumber: 5.9 Consensus size: 13
930787 GCGGATGCTC
930797 GATGCATCATGCG
1 GATGCATCATGCG
930810 GATG---CAT-C-
1 GATGCATCATGCG
930818 GATGCATCATGCG
1 GATGCATCATGCG
930831 GATG---CAT-C-
1 GATGCATCATGCG
930839 GATGCATCATGCG
1 GATGCATCATGCG
930852 GATGCATCGATGC
1 GATGCATC-ATGC
930865 ACATTCAAGG
Statistics
Matches: 44, Mismatches: 0, Indels: 21
0.68 0.00 0.32
Matches are distributed among these distances:
8 8 0.18
9 2 0.05
10 6 0.14
11 6 0.14
12 2 0.05
13 16 0.36
14 4 0.09
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (13 bp):
GATGCATCATGCG
Found at i:930821 original size:21 final size:21
Alignment explanation
Indices: 930770--930865 Score: 176
Period size: 21 Copynumber: 4.6 Consensus size: 21
930760 TATTCAATGC
*
930770 ATGCATCGGTGCATCATGCGG
1 ATGCATCGATGCATCATGCGG
930791 ATGC-TCGATGCATCATGCGG
1 ATGCATCGATGCATCATGCGG
930811 ATGCATCGATGCATCATGCGG
1 ATGCATCGATGCATCATGCGG
930832 ATGCATCGATGCATCATGCGG
1 ATGCATCGATGCATCATGCGG
930853 ATGCATCGATGCA
1 ATGCATCGATGCA
930866 CATTCAAGGG
Statistics
Matches: 73, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
20 19 0.26
21 54 0.74
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (21 bp):
ATGCATCGATGCATCATGCGG
Found at i:938176 original size:14 final size:15
Alignment explanation
Indices: 938150--938178 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
938140 TCCAGTAAGC
938150 AGATTAGTACTGATA
1 AGATTAGTACTGATA
938165 AGATTA-TACTGATA
1 AGATTAGTACTGATA
938179 CTCTTGGAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.34
Consensus pattern (15 bp):
AGATTAGTACTGATA
Found at i:938351 original size:15 final size:15
Alignment explanation
Indices: 938331--938361 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
938321 TCCAGTAAGC
938331 AAGATTAGTACTGAT
1 AAGATTAGTACTGAT
938346 AAGATTAGTACTGAT
1 AAGATTAGTACTGAT
938361 A
1 A
938362 CTCTTGGAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.42, C:0.06, G:0.19, T:0.32
Consensus pattern (15 bp):
AAGATTAGTACTGAT
Found at i:938417 original size:183 final size:182
Alignment explanation
Indices: 938111--938475 Score: 705
Period size: 183 Copynumber: 2.0 Consensus size: 182
938101 ATAATATCGA
938111 TTACCTATTATTTTTCAAATTGTTCAAATTCCAGTAAGCAGATTAGTACTGATAAGATTATACTG
1 TTACCTATTATTTTTCAAATTGTTCAAATTCCAGTAAGCAGATTAGTACTGATAAGATTATACTG
938176 ATACTCTTGGAGTATCGATATTACTTTACACTGTAGTATCGATATTGGTCAAGCCGAAGGATCAC
66 ATACTCTTGGAGTATCGATATTACTTTACACTGTAGTATCGATATTGGTCAAGCCGAAGGATCAC
938241 TAATGAGTAGTTTATTT-AAAATTATAAAGGAAGTGTCGATACTCTCTTAAG
131 TAATGAGTAGTTTATTTAAAAATTATAAAGGAAGTGTCGATACTCTCTTAAG
938292 TTACCTATTATTTTTCAAATTGTTCAAATTCCAGTAAGCAAGATTAGTACTGATAAGATTAGTAC
1 TTACCTATTATTTTTCAAATTGTTCAAATTCCAGTAAGC-AGATTAGTACTGATAAGATTA-TAC
938357 TGATACTCTTGGAGTATCGATATTACTTTACACTGTAGTATCGATATTGGTCAAGCCGAAGGATC
64 TGATACTCTTGGAGTATCGATATTACTTTACACTGTAGTATCGATATTGGTCAAGCCGAAGGATC
938422 ACTAATGAGTAGTTTATTTAAAAATTATAAAGGAAGTGTCGATACTCTCTTAAG
129 ACTAATGAGTAGTTTATTTAAAAATTATAAAGGAAGTGTCGATACTCTCTTAAG
938476 AAGTACCGAT
Statistics
Matches: 181, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
181 39 0.22
182 21 0.12
183 87 0.48
184 34 0.19
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (182 bp):
TTACCTATTATTTTTCAAATTGTTCAAATTCCAGTAAGCAGATTAGTACTGATAAGATTATACTG
ATACTCTTGGAGTATCGATATTACTTTACACTGTAGTATCGATATTGGTCAAGCCGAAGGATCAC
TAATGAGTAGTTTATTTAAAAATTATAAAGGAAGTGTCGATACTCTCTTAAG
Found at i:938823 original size:27 final size:26
Alignment explanation
Indices: 938755--938836 Score: 67
Period size: 31 Copynumber: 2.9 Consensus size: 26
938745 CACTTCTCGC
*
938755 TAAATGTTAGAGTGATTAAATTAAAAA
1 TAAATTTTA-AGTGATTAAATTAAAAA
938782 TAAATTAAAAATTAAGTGATTAAATTAAAAA
1 TAAATT-----TTAAGTGATTAAATTAAAAA
* *
938813 TTAAATTTTAA-TGATCAAAATAAA
1 -TAAATTTTAAGTGATTAAATTAAA
938837 GTGAGTATAA
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
26 11 0.24
27 9 0.20
31 17 0.37
32 9 0.20
ACGTcount: A:0.56, C:0.01, G:0.09, T:0.34
Consensus pattern (26 bp):
TAAATTTTAAGTGATTAAATTAAAAA
Found at i:940502 original size:29 final size:29
Alignment explanation
Indices: 940469--940531 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
940459 ATTCTACAGT
*
940469 GACCTTGGAGGTCGCCATGGCATCCGGGC
1 GACCTTGGAGGTCGCCATGGCATCCGAGC
940498 GACCTTGGAGGTCGCCATGGCATCCGAGC
1 GACCTTGGAGGTCGCCATGGCATCCGAGC
940527 GACCT
1 GACCT
940532 GTGTGGTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.16, C:0.32, G:0.35, T:0.17
Consensus pattern (29 bp):
GACCTTGGAGGTCGCCATGGCATCCGAGC
Found at i:941162 original size:21 final size:21
Alignment explanation
Indices: 941137--941180 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
941127 AATCTAGTTA
941137 ATTAGTTTGTTAGTATAAATT
1 ATTAGTTTGTTAGTATAAATT
* *
941158 ATTAGTTTGTTAGTTTAAGTT
1 ATTAGTTTGTTAGTATAAATT
941179 AT
1 AT
941181 ATTATTAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (21 bp):
ATTAGTTTGTTAGTATAAATT
Found at i:941191 original size:26 final size:26
Alignment explanation
Indices: 941155--941212 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
941145 GTTAGTATAA
*
941155 ATTATTAGTTTGTTAGTTTAAGTTAT
1 ATTATTAGTTTATTAGTTTAAGTTAT
941181 ATTATTAGTTTATTAGTTTAAGTTAT
1 ATTATTAGTTTATTAGTTTAAGTTAT
941207 A-TATTA
1 ATTATTA
941213 TATTATATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 5 0.16
26 26 0.84
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.57
Consensus pattern (26 bp):
ATTATTAGTTTATTAGTTTAAGTTAT
Found at i:941758 original size:20 final size:21
Alignment explanation
Indices: 941714--941758 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
941704 AAATATTGTG
**
941714 TTTAAAAATATTTAGTGTTGT
1 TTTAAAAATATTTAGTGTTAA
*
941735 TTTAAAAATATTTTGT-TTAA
1 TTTAAAAATATTTAGTGTTAA
941755 TTTA
1 TTTA
941759 CATTGTTTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.56
Consensus pattern (21 bp):
TTTAAAAATATTTAGTGTTAA
Found at i:944849 original size:25 final size:26
Alignment explanation
Indices: 944821--945164 Score: 218
Period size: 25 Copynumber: 14.4 Consensus size: 26
944811 TTTGATGATT
944821 TAGT-ATGATTTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
944846 TAGTAATGATTTGATAA-AATCATT-
1 TAGTAATGATTTGATAATAATCATTA
*
944870 TAATAATGATTT-AGTAATAATCATTA
1 TAGTAATGATTTGA-TAATAATCATTA
*
944896 TA--AATGA-TT-ATAATGAT--TTA
1 TAGTAATGATTTGATAATAATCATTA
* * * * * * *
944916 -AATATTTA-ATGAT-TTGATGATT-
1 TAGTAATGATTTGATAATAATCATTA
944938 TAGTAATGA-TTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
944963 TAGTAATGATTTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
*
944989 TAGTAAT-AATTGATAATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
* *
945014 TAATAATGATTAG-TAATAATCA-TA
1 TAGTAATGATTTGATAATAATCATTA
** *
945038 TAAAAATGA-TT--TAATAATGATT-
1 TAGTAATGATTTGATAATAATCATTA
* * *
945060 TA--AAT-A-TTAATAATTTGATGATT-
1 TAGTAATGATTTGATAA--TAATCATTA
945083 TAGTAATGATTTGATAAT-A--ATTA
1 TAGTAATGATTTGATAATAATCATTA
945106 TAGTAATGATTTG---ATAATCATTA
1 TAGTAATGATTTGATAATAATCATTA
*
945129 TAATAATGATTT-AGTAATAATC-TTA
1 TAGTAATGATTTGA-TAATAATCATTA
**
945154 TAAAAATGATT
1 TAGTAATGATT
945165 AATAATGATT
Statistics
Matches: 264, Mismatches: 24, Indels: 62
0.75 0.07 0.18
Matches are distributed among these distances:
19 4 0.02
20 8 0.03
21 12 0.05
22 21 0.08
23 54 0.20
24 36 0.14
25 76 0.29
26 47 0.18
27 6 0.02
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.43
Consensus pattern (26 bp):
TAGTAATGATTTGATAATAATCATTA
Found at i:944927 original size:16 final size:18
Alignment explanation
Indices: 944886--944948 Score: 60
Period size: 19 Copynumber: 3.5 Consensus size: 18
944876 TGATTTAGTA
*
944886 ATAATCATTATAAATGATT
1 ATAATGATT-TAAATGATT
944905 ATAATGATTTAAAT-ATT
1 ATAATGATTTAAATGATT
*
944922 -TAATGATTT-GATGATTT
1 ATAATGATTTAAATGA-TT
944939 AGTAATGATT
1 A-TAATGATT
944949 GATAATAATC
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
15 2 0.05
16 10 0.26
17 5 0.13
18 5 0.13
19 16 0.42
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (18 bp):
ATAATGATTTAAATGATT
Found at i:944930 original size:8 final size:8
Alignment explanation
Indices: 944898--944939 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
944888 AATCATTATA
944898 AATGATTAT
1 AATGATT-T
944907 AATGATTT
1 AATGATTT
944915 AAAT-ATTT
1 -AATGATTT
944923 AATGATTT
1 AATGATTT
*
944931 GATGATTT
1 AATGATTT
944939 A
1 A
944940 GTAATGATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
7 3 0.10
8 16 0.55
9 10 0.34
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (8 bp):
AATGATTT
Found at i:944939 original size:57 final size:59
Alignment explanation
Indices: 944768--944944 Score: 169
Period size: 57 Copynumber: 3.0 Consensus size: 59
944758 ATGTATTTAT
944768 TAATCATTATAAAATGATTTAATAATGATTTAAATA-TTAATGATTTGATGATTTAGT-A
1 TAATCATTATAAAATGATTT-ATAATGATTTAAATATTTAATGATTTGATGATTTAGTAA
* *
944826 TGAT--TTGATAATAATCATTATAGTAATGATTTGATAAAATCATTTAAT-A----ATGATTTAG
1 TAATCATT-ATAA-AATGATT-TA-TAATGA-TT--T-AAAT-ATTTAATGATTTGATGATTTAG
944884 TAA
57 TAA
944887 TAATCATTAT-AAATGA-TTATAATGATTTAAATATTTAATGATTTGATGATTTAGTAA
1 TAATCATTATAAAATGATTTATAATGATTTAAATATTTAATGATTTGATGATTTAGTAA
944944 T
1 T
944945 GATTGATAAT
Statistics
Matches: 97, Mismatches: 4, Indels: 37
0.70 0.03 0.27
Matches are distributed among these distances:
52 7 0.07
53 5 0.05
54 1 0.01
56 4 0.04
57 23 0.24
58 12 0.12
59 8 0.08
60 16 0.16
61 5 0.05
62 3 0.03
63 6 0.06
64 2 0.02
65 5 0.05
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.45
Consensus pattern (59 bp):
TAATCATTATAAAATGATTTATAATGATTTAAATATTTAATGATTTGATGATTTAGTAA
Done.