Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8646418
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 40 of 43
Found at i:8031930 original size:21 final size:19
Alignment explanation
Indices: 8031889--8031926 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
8031879 CGAAATATAC
*
8031889 ATATATATTTTTATATATT
1 ATATATATTATTATATATT
8031908 ATATATATGTATTAT-TATT
1 ATATATAT-TATTATATATT
8031927 TTATTAACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (19 bp):
ATATATATTATTATATATT
Found at i:8032975 original size:10 final size:9
Alignment explanation
Indices: 8032960--8033022 Score: 76
Period size: 10 Copynumber: 6.8 Consensus size: 9
8032950 TTTCCCCCAA
8032960 ATATTATAGT
1 ATATTATA-T
8032970 ATATTATAT
1 ATATTATAT
8032979 ATA-TATAT
1 ATATTATAT
8032987 ATATATATAT
1 ATAT-TATAT
8032997 ATATATATAT
1 ATAT-TATAT
8033007 ATATTAT-T
1 ATATTATAT
8033015 AGTATTAT
1 A-TATTAT
8033023 TTTCTTTTTC
Statistics
Matches: 50, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
8 10 0.20
9 13 0.26
10 27 0.54
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.52
Consensus pattern (9 bp):
ATATTATAT
Found at i:8032981 original size:2 final size:2
Alignment explanation
Indices: 8032960--8033010 Score: 79
Period size: 2 Copynumber: 26.0 Consensus size: 2
8032950 TTTCCCCCAA
8032960 AT AT -T AT AGT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8033001 AT AT AT AT AT
1 AT AT AT AT AT
8033011 TATTAGTATT
Statistics
Matches: 46, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.04
2 42 0.91
3 2 0.04
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
AT
Found at i:8033279 original size:66 final size:67
Alignment explanation
Indices: 8033209--8033347 Score: 146
Period size: 66 Copynumber: 2.1 Consensus size: 67
8033199 ATATCCTATA
*
8033209 TATATGTATA-TATATATA-TAT-ATGTGTTTTTCTATTATTTT-TTCTATTTTCATTTATTATT
1 TATATGTATACTATATATATTATCAT-T-TTTTACTATT-TTTTATTCT-TTTTCATTTATTATT
8033270 ATTA-T
62 ATTATT
* * * * *
8033275 TATAT-CATACTATTTTTATTTTCATTTTTTACTATTTTTTATTCTTTTTCCTTTATTATTATTA
1 TATATGTATACTATATATATTATCATTTTTTACTATTTTTTATTCTTTTTCATTTATTATTATTA
8033339 TT
66 TT
8033341 TATATGT
1 TATATGT
8033348 TTTTATTAGT
Statistics
Matches: 60, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
65 25 0.42
66 30 0.50
67 3 0.05
68 2 0.03
ACGTcount: A:0.24, C:0.07, G:0.03, T:0.65
Consensus pattern (67 bp):
TATATGTATACTATATATATTATCATTTTTTACTATTTTTTATTCTTTTTCATTTATTATTATTA
TT
Found at i:8033361 original size:29 final size:30
Alignment explanation
Indices: 8033328--8033384 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
8033318 CTTTTTCCTT
*
8033328 TATTATTATTAT-TTATATGTTT-TTATTAG
1 TATTATTA-TATGTTATATATTTATTATTAG
8033357 TATTATTATATGTTATATATTTATTATT
1 TATTATTATATGTTATATATTTATTATT
8033385 TTGTAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 3 0.12
29 17 0.68
30 5 0.20
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (30 bp):
TATTATTATATGTTATATATTTATTATTAG
Found at i:8033470 original size:2 final size:2
Alignment explanation
Indices: 8033463--8033491 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8033453 TTTTATGCAT
8033463 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8033492 TTCTTTATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8039923 original size:21 final size:21
Alignment explanation
Indices: 8039899--8039948 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
8039889 ACAATTGAAC
8039899 AATATAAGATCGTATTTTCTT
1 AATATAAGATCGTATTTTCTT
8039920 AATATAAGATCGTATTTTCTT
1 AATATAAGATCGTATTTTCTT
8039941 AATATAAG
1 AATATAAG
8039949 TTCAAATGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (21 bp):
AATATAAGATCGTATTTTCTT
Found at i:8047466 original size:14 final size:14
Alignment explanation
Indices: 8047447--8047473 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8047437 GATCAGAACT
8047447 TCAAGATTCCAGAA
1 TCAAGATTCCAGAA
8047461 TCAAGATTCCAGA
1 TCAAGATTCCAGA
8047474 CATGCAACCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (14 bp):
TCAAGATTCCAGAA
Found at i:8047916 original size:43 final size:43
Alignment explanation
Indices: 8047840--8047921 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
8047830 ATGAAGGGGC
* ** * *
8047840 CATCCGCGATTTCAACTCCATGACGGAGGATATCGTACCCACA
1 CATCCACGATTTCAACTCCACAACAGAGAATATCGTACCCACA
*
8047883 CATCCACGATTTCAACTCCACAATAGAGAATATCGTACC
1 CATCCACGATTTCAACTCCACAACAGAGAATATCGTACC
8047922 ATTTGAGGCT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.32, C:0.32, G:0.15, T:0.22
Consensus pattern (43 bp):
CATCCACGATTTCAACTCCACAACAGAGAATATCGTACCCACA
Found at i:8048158 original size:110 final size:110
Alignment explanation
Indices: 8047960--8048159 Score: 265
Period size: 110 Copynumber: 1.8 Consensus size: 110
8047950 GCTTCCTAGT
* * * * * *
8047960 TTCAGAGTCAATTTCAACTTCATAGCGAAGGATATTGGACTCAAGACATCCCAATCTCAACTTCA
1 TTCAGAGTCAATTTCAACTTCACAACGAAGGATATTAGACTCAAGACAGCACAAGCTCAACTTCA
* * *
8048025 CAATGAAGGGGTGACTGATTGTCAATAAATAACTTTTCAGTTTCA
66 CAACGAAGGGGCGACTGACTGTCAATAAATAACTTTTCAGTTTCA
* * *
8048070 TTCAGAGTCAATTTCAACTTCACAATGAAGGATATTAGACTCGAGACAGCACAAGCTTAACTTCA
1 TTCAGAGTCAATTTCAACTTCACAACGAAGGATATTAGACTCAAGACAGCACAAGCTCAACTTCA
** *
8048135 CGGCGAAGGGGCGACTGGCTGTCAA
66 CAACGAAGGGGCGACTGACTGTCAA
8048160 CAAACCATTT
Statistics
Matches: 75, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
110 75 1.00
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.27
Consensus pattern (110 bp):
TTCAGAGTCAATTTCAACTTCACAACGAAGGATATTAGACTCAAGACAGCACAAGCTCAACTTCA
CAACGAAGGGGCGACTGACTGTCAATAAATAACTTTTCAGTTTCA
Found at i:8048996 original size:2 final size:2
Alignment explanation
Indices: 8048983--8049033 Score: 68
Period size: 2 Copynumber: 26.0 Consensus size: 2
8048973 TATAACCGAA
* * *
8048983 AT AT AC AT AT AT AT TT TT AT AT -T AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8049024 AT AT AT AT AT
1 AT AT AT AT AT
8049034 TATTTTATTA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
1 1 0.02
2 43 0.98
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:8050127 original size:2 final size:2
Alignment explanation
Indices: 8050115--8050144 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8050105 ATTTAATTAC
*
8050115 AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8050145 TAGTATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8050447 original size:14 final size:15
Alignment explanation
Indices: 8050428--8050470 Score: 70
Period size: 14 Copynumber: 2.9 Consensus size: 15
8050418 ACATTACCCG
8050428 CCCCGCATCCGCCC-
1 CCCCGCATCCGCCCA
8050442 CCCCGCATCCGCCCA
1 CCCCGCATCCGCCCA
*
8050457 CCCCACATCCGCCC
1 CCCCGCATCCGCCC
8050471 GCCCAGCTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
14 14 0.52
15 13 0.48
ACGTcount: A:0.12, C:0.70, G:0.12, T:0.07
Consensus pattern (15 bp):
CCCCGCATCCGCCCA
Found at i:8051382 original size:29 final size:29
Alignment explanation
Indices: 8051350--8051414 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 29
8051340 TTCTTTTGCC
* *
8051350 TTTATTACTATTATTATTAT-TTATATGTT
1 TTTATTACTATTATTA-TATGTTATATATA
8051379 TTTATTACTATTATTATATGTTATATATA
1 TTTATTACTATTATTATATGTTATATATA
8051408 TTTATTA
1 TTTATTA
8051415 TTTTGTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (29 bp):
TTTATTACTATTATTATATGTTATATATA
Found at i:8051384 original size:23 final size:22
Alignment explanation
Indices: 8051358--8051417 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 22
8051348 CCTTTATTAC
*
8051358 TATTATTATTATTTATATGTTTT
1 TATTATTATTATTTATATG-TTA
*
8051381 TATTACTATTA-TTATATGTTA
1 TATTATTATTATTTATATGTTA
8051402 TATATATTTATTATTT
1 TAT-TA-TTATTATTT
8051418 TGTAAATTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 5 0.16
22 9 0.29
23 15 0.48
24 2 0.06
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (22 bp):
TATTATTATTATTTATATGTTA
Found at i:8055588 original size:2 final size:2
Alignment explanation
Indices: 8055581--8055637 Score: 107
Period size: 2 Copynumber: 29.0 Consensus size: 2
8055571 ATTTTATTAA
8055581 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8055623 CT CT CT CT -T CT CT CT
1 CT CT CT CT CT CT CT CT
8055638 TCCTACTTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 53 0.98
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
CT
Found at i:8056037 original size:5 final size:5
Alignment explanation
Indices: 8056027--8056065 Score: 57
Period size: 5 Copynumber: 8.4 Consensus size: 5
8056017 AATATGACTA
8056027 AAAAT AAAAT -AAAT AAAAT -AAAT AAAAT -AAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA
8056066 TTTCTTTAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 12 0.39
5 19 0.61
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:8056042 original size:9 final size:9
Alignment explanation
Indices: 8056028--8056065 Score: 76
Period size: 9 Copynumber: 4.2 Consensus size: 9
8056018 ATATGACTAA
8056028 AAATAAAAT
1 AAATAAAAT
8056037 AAATAAAAT
1 AAATAAAAT
8056046 AAATAAAAT
1 AAATAAAAT
8056055 AAATAAAAT
1 AAATAAAAT
8056064 AA
1 AA
8056066 TTTCTTTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
AAATAAAAT
Found at i:8056699 original size:53 final size:53
Alignment explanation
Indices: 8056619--8056726 Score: 198
Period size: 53 Copynumber: 2.0 Consensus size: 53
8056609 AACATTTCGC
*
8056619 ATTTCTCCATGTTCTTCCTTTTATTAAAGCTTAAAACACTATATTTTATATTG
1 ATTTCTCCATGTTCTTCCTTTTATTAAAGCTTAAAACACTATATTTTACATTG
*
8056672 ATTTCTCTATGTTCTTCCTTTTATTAAAGCTTAAAACACTATATTTTACATTG
1 ATTTCTCCATGTTCTTCCTTTTATTAAAGCTTAAAACACTATATTTTACATTG
8056725 AT
1 AT
8056727 ACATGCAAGA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.29, C:0.17, G:0.06, T:0.49
Consensus pattern (53 bp):
ATTTCTCCATGTTCTTCCTTTTATTAAAGCTTAAAACACTATATTTTACATTG
Found at i:8058846 original size:2 final size:2
Alignment explanation
Indices: 8058839--8058884 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
8058829 AAAATGCCAT
8058839 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8058881 TA TA
1 TA TA
8058885 CCTATTGCGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8059341 original size:3 final size:3
Alignment explanation
Indices: 8059333--8059359 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8059323 CATGAGAAAA
8059333 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
8059360 GTTTAGTGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8061103 original size:15 final size:15
Alignment explanation
Indices: 8061085--8061124 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
8061075 TAAGTTAGGG
*
8061085 GTTAGTTAGTTAGAA
1 GTTAGTTAATTAGAA
*
8061100 GTTAGTAAATTAGAA
1 GTTAGTTAATTAGAA
8061115 GTTAGTTAAT
1 GTTAGTTAAT
8061125 AATGAAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.40
Consensus pattern (15 bp):
GTTAGTTAATTAGAA
Found at i:8068739 original size:36 final size:36
Alignment explanation
Indices: 8068692--8068765 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
8068682 CTTTGAACCA
8068692 CCAGCATAAGAGGAATAAGGCAGAGGTTAGAGTGAT
1 CCAGCATAAGAGGAATAAGGCAGAGGTTAGAGTGAT
8068728 CCAGCATAAGAGGAATAAGGCAGAGGTTAGAGTGAT
1 CCAGCATAAGAGGAATAAGGCAGAGGTTAGAGTGAT
8068764 CC
1 CC
8068766 CATATATAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.38, C:0.14, G:0.32, T:0.16
Consensus pattern (36 bp):
CCAGCATAAGAGGAATAAGGCAGAGGTTAGAGTGAT
Found at i:8069510 original size:20 final size:20
Alignment explanation
Indices: 8069485--8069522 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8069475 TGGTTTTATG
**
8069485 TCTTCAAAGGTCTTCAAGCC
1 TCTTCAAACCTCTTCAAGCC
8069505 TCTTCAAACCTCTTCAAG
1 TCTTCAAACCTCTTCAAG
8069523 AACAATTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.32, G:0.11, T:0.32
Consensus pattern (20 bp):
TCTTCAAACCTCTTCAAGCC
Found at i:8069599 original size:15 final size:15
Alignment explanation
Indices: 8069579--8069706 Score: 131
Period size: 15 Copynumber: 8.5 Consensus size: 15
8069569 TAATAAGGTT
8069579 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
8069594 ATTTATTTTAAAATA
1 ATTTATTTTAAAATA
*
8069609 ATTTATTATAAAAT-
1 ATTTATTTTAAAATA
*
8069623 A-TTA-TATAAAATA
1 ATTTATTTTAAAATA
*
8069636 ACTTATTTT-AAATA
1 ATTTATTTTAAAATA
*
8069650 ATTTATTATAAATATGGA
1 ATTTATTTTAAA-AT--A
8069668 TTGATTTATTTTAAAATA
1 ---ATTTATTTTAAAATA
8069686 ATTTATTTT-AAATA
1 ATTTATTTTAAAATA
8069700 ATTTATT
1 ATTTATT
8069707 AGTATGGATT
Statistics
Matches: 98, Mismatches: 5, Indels: 21
0.79 0.04 0.17
Matches are distributed among these distances:
12 8 0.08
13 4 0.04
14 28 0.29
15 41 0.42
16 2 0.02
18 2 0.02
20 2 0.02
21 11 0.11
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (15 bp):
ATTTATTTTAAAATA
Found at i:8069674 original size:21 final size:21
Alignment explanation
Indices: 8069650--8069752 Score: 64
Period size: 21 Copynumber: 4.7 Consensus size: 21
8069640 ATTTTAAATA
8069650 ATTTATTATAAATATGGATTG
1 ATTTATTATAAATATGGATTG
* ** *
8069671 ATTTATTTTAAAATAATTTATTTTA
1 ATTTATTAT-AAAT-ATGGA--TTG
* * * *
8069696 AATAATTTATTAGTATGGATTG
1 ATTTA-TTATAAATATGGATTG
8069718 ATTTATT-TAAAATATGGATTG
1 ATTTATTAT-AAATATGGATTG
*
8069739 ATTTATTTTAAATA
1 ATTTATTATAAATA
8069753 ATTTATTAGC
Statistics
Matches: 59, Mismatches: 16, Indels: 14
0.66 0.18 0.16
Matches are distributed among these distances:
20 1 0.02
21 32 0.54
22 10 0.17
23 3 0.05
24 3 0.05
25 7 0.12
26 3 0.05
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (21 bp):
ATTTATTATAAATATGGATTG
Found at i:8069757 original size:31 final size:31
Alignment explanation
Indices: 8069722--8069781 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
8069712 GGATTGATTT
*
8069722 ATTTA-AAATATGGATTGATTTATTTTAAATA
1 ATTTATAAACATGGATTGA-TTATTTTAAATA
* *
8069753 ATTTATTAGCATGGATTGATTATTTTAAA
1 ATTTATAAACATGGATTGATTATTTTAAA
8069782 ATATGAATTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 15 0.60
32 10 0.40
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (31 bp):
ATTTATAAACATGGATTGATTATTTTAAATA
Found at i:8069757 original size:53 final size:54
Alignment explanation
Indices: 8069686--8070179 Score: 365
Period size: 53 Copynumber: 9.4 Consensus size: 54
8069676 TTTTAAAATA
8069686 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-TTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* *
8069739 ATTTATTTTAAATAATTTATTAGCATGGATTGA-TTATTTTAAAATATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
8069792 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-TTTAAAATATGAATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
8069845 ATTTA---T--AT--TGTAGTT-GTATGGA-TGATTTATTTTAAATATTTATTAGTAGGATTG
1 ATTTATTTTAAATAATTTA-TTAGTATGGATTGATTTATTTT-AA-A---A-TA-T-GGATTG
** * * ** * * *
8069899 ATTTATTTTAAA-ATATGGATT-G-AT-TATTTAAATAATTTATTAGTATGGATTG
1 ATTTATTTTAAATA-ATTTATTAGTATGGATTGATTTATTTTA-AAATATGGATTG
* * *
8069951 ATTTATTTTAAA-CACTTATTAGTATAGATTGATTTATTTTAAAATA-GGATTG
1 ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
* * * *
8070003 ATTTA--TT--AT--TGTAGTT-GTATGAATTGATTTATTTTAAATAATCTATTAGTATGG
1 ATTTATTTTAAATAATTTA-TTAGTATGGATTGATTTATTTT-AA-AA--TA-T-GGATTG
8070057 ATGATTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
1 AT--TTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
*
8070113 ATTTA--TT--AT--TGTAGTT-G--TGGATTGA-TTATTTTAAAATATGGATTG
1 ATTTATTTTAAATAATTTA-TTAGTATGGATTGATTTATTTTAAAATATGGATTG
8070158 ATTTATTTTAAATAATTTATTA
1 ATTTATTTTAAATAATTTATTA
8070180 TTGTAGTTGT
Statistics
Matches: 354, Mismatches: 36, Indels: 104
0.72 0.07 0.21
Matches are distributed among these distances:
45 32 0.09
46 21 0.06
47 25 0.07
48 12 0.03
49 6 0.02
50 7 0.02
51 10 0.03
52 37 0.10
53 107 0.30
54 34 0.10
56 9 0.03
57 2 0.01
58 7 0.02
59 10 0.03
60 7 0.02
61 7 0.02
62 21 0.06
ACGTcount: A:0.35, C:0.01, G:0.14, T:0.51
Consensus pattern (54 bp):
ATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTG
Found at i:8069767 original size:32 final size:31
Alignment explanation
Indices: 8069731--8069837 Score: 117
Period size: 32 Copynumber: 3.7 Consensus size: 31
8069721 TATTTAAAAT
8069731 ATGGATTGATTTATTTTAAATAATTTATTAG
1 ATGGATTGATTTATTTTAAATAATTTATTAG
8069762 CATGGATTGA-TTATTTT-AA-AA--TA-T-G
1 -ATGGATTGATTTATTTTAAATAATTTATTAG
8069787 A---ATTGATTTATTTTAAATAATTTATTAG
1 ATGGATTGATTTATTTTAAATAATTTATTAG
*
8069815 TATGGATTGATTTATTTAAAATA
1 -ATGGATTGATTTATTTTAAATA
8069838 TGAATTGATT
Statistics
Matches: 63, Mismatches: 1, Indels: 22
0.73 0.01 0.26
Matches are distributed among these distances:
21 5 0.08
22 7 0.11
23 2 0.03
24 3 0.05
25 1 0.02
26 3 0.05
27 3 0.05
28 1 0.02
29 3 0.05
30 2 0.03
31 7 0.11
32 26 0.41
ACGTcount: A:0.37, C:0.01, G:0.12, T:0.50
Consensus pattern (31 bp):
ATGGATTGATTTATTTTAAATAATTTATTAG
Found at i:8069937 original size:51 final size:52
Alignment explanation
Indices: 8069861--8069962 Score: 165
Period size: 52 Copynumber: 2.0 Consensus size: 52
8069851 ATTGTAGTTG
8069861 TATGGATGATTTATTTTAAATATTTATTAGTA-GGATTGATTTATTTTAAAA
1 TATGGATGATTTATTTTAAATATTTATTAGTATGGATTGATTTATTTTAAAA
8069912 TATGGATTGA-TTA-TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA
1 TATGGA-TGATTTATTTTAAAT-ATTTATTAGTATGGATTGATTTATTTTAAA
8069963 CACTTATTAG
Statistics
Matches: 48, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
50 7 0.15
51 20 0.42
52 21 0.44
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (52 bp):
TATGGATGATTTATTTTAAATATTTATTAGTATGGATTGATTTATTTTAAAA
Found at i:8069970 original size:31 final size:32
Alignment explanation
Indices: 8069912--8069993 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 32
8069902 TATTTTAAAA
*
8069912 TATGGATTGA-TTA-TTTAAATAATTTATTAG
1 TATGGATTGATTTATTTTAAATAACTTATTAG
*
8069942 TATGGATTGATTTATTTTAAA-CACTTATTAG
1 TATGGATTGATTTATTTTAAATAACTTATTAG
*
8069973 TATAGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
8069994 ATAGGATTGA
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
30 10 0.21
31 31 0.66
32 6 0.13
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.50
Consensus pattern (32 bp):
TATGGATTGATTTATTTTAAATAACTTATTAG
Found at i:8069970 original size:82 final size:80
Alignment explanation
Indices: 8069783--8070070 Score: 348
Period size: 82 Copynumber: 3.6 Consensus size: 80
8069773 TATTTTAAAA
*
8069783 TATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTA-TTTAAAATATGAATTG--
1 TATGAATTGATTTATTTTAAAT-ATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGAT
8069845 -ATTTATATTGTAGTTG
65 TATTTATATT-TAGTTG
*
8069861 TATGGA-TGATTTATTTTAAATATTTATTAGTA-GGATTGATTTATTTTAAAATATGGATTGATT
1 TATGAATTGATTTATTTTAAATATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATT
8069924 ATTTAAATAATTTA-TTAG
66 ATTT--AT-ATTTAGTT-G
* * * *
8069942 TATGGATTGATTTATTTTAAACACTTATTAGTATAGATTGATTTATTTTAAAATA-GGATTGATT
1 TATGAATTGATTTATTTTAAATATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATT
*
8070006 -TATTAT-TGTAGTTG
66 AT-TTATATTTAGTTG
*
8070020 TATGAATTGATTTATTTTAAATAATCTATTAGTATGGA-TGA-TTATTTTAAA
1 TATGAATTGATTTATTTTAAAT-ATTTATTAGTATGGATTGATTTATTTTAAA
8070071 TAATTTATTA
Statistics
Matches: 186, Mismatches: 11, Indels: 27
0.83 0.05 0.12
Matches are distributed among these distances:
75 11 0.06
76 26 0.14
77 25 0.13
78 32 0.17
79 18 0.10
80 4 0.02
81 12 0.06
82 38 0.20
83 20 0.11
ACGTcount: A:0.35, C:0.01, G:0.14, T:0.50
Consensus pattern (80 bp):
TATGAATTGATTTATTTTAAATATTTATTAGTATGGATTGATTTATTTTAAAATATGGATTGATT
ATTTATATTTAGTTG
Found at i:8070055 original size:110 final size:109
Alignment explanation
Indices: 8069912--8070147 Score: 365
Period size: 110 Copynumber: 2.2 Consensus size: 109
8069902 TATTTTAAAA
* *
8069912 TATGGATTGATTA-TTTAAATAATTTATTAGTATGGATTGATTTATTTTAAA-CACTTATTAGTA
1 TATGGATTGATTATTTTAAATAATCTATTAGTATGGA-TGA-TTATTTTAAATAACTTATTAGTA
8069975 TAGATTGATTTATTTTAAAATA-GGATTGATTTATTATTGTAGTTG
64 TAGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTG
* *
8070020 TATGAATTGATTTATTTTAAATAATCTATTAGTATGGATGATTATTTTAAATAATTTATTAGTAT
1 TATGGATTGA-TTATTTTAAATAATCTATTAGTATGGATGATTATTTTAAATAACTTATTAGTAT
*
8070085 GGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTG
65 AGATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTG
8070130 --TGGATTGATTATTTTAAA
1 TATGGATTGATTATTTTAAA
8070148 ATATGGATTG
Statistics
Matches: 118, Mismatches: 6, Indels: 9
0.89 0.05 0.07
Matches are distributed among these distances:
107 10 0.08
108 26 0.22
109 37 0.31
110 45 0.38
ACGTcount: A:0.33, C:0.01, G:0.15, T:0.50
Consensus pattern (109 bp):
TATGGATTGATTATTTTAAATAATCTATTAGTATGGATGATTATTTTAAATAACTTATTAGTATA
GATTGATTTATTTTAAAATATGGATTGATTTATTATTGTAGTTG
Found at i:8070065 original size:30 final size:32
Alignment explanation
Indices: 8070019--8070102 Score: 136
Period size: 30 Copynumber: 2.7 Consensus size: 32
8070009 TATTGTAGTT
*
8070019 GTATGAATTGATTTATTTTAAATAATCTATTA
1 GTATGGATTGATTTATTTTAAATAATCTATTA
*
8070051 GTATGGA-TGA-TTATTTTAAATAATTTATTA
1 GTATGGATTGATTTATTTTAAATAATCTATTA
8070081 GTATGGATTGATTTATTTTAAA
1 GTATGGATTGATTTATTTTAAA
8070103 ATATGGATTG
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
30 26 0.54
31 6 0.12
32 16 0.33
ACGTcount: A:0.36, C:0.01, G:0.13, T:0.50
Consensus pattern (32 bp):
GTATGGATTGATTTATTTTAAATAATCTATTA
Found at i:8070072 original size:159 final size:159
Alignment explanation
Indices: 8069783--8070070 Score: 440
Period size: 159 Copynumber: 1.8 Consensus size: 159
8069773 TATTTTAAAA
* *
8069783 TATGAATTGATTTATTTTAAATAATTTATTAGTATGGATTGATTTATTTAAAATATGAATTGATT
1 TATGAATTGATTTATTTTAAATAACTTATTAGTATAGATTGATTTATTTAAAATATGAATTGATT
* *
8069848 TATATTGTAGTTGTATGGATGATTTATTTTAAATATTTATTAGTAGGATTGATTTATTTTAAAAT
66 TATATTGTAGTTGTATGAATGATTTATTTTAAATATCTATTAGTAGGATTGATTTATTTTAAAAT
8069913 ATGGATTGATTATTTAAATAATTTATTAG
131 ATGGATTGATTATTTAAATAATTTATTAG
* * *
8069942 TATGGATTGATTTATTTTAAA-CACTTATTAGTATAGATTGATTTATTTTAAAATA-GGATTGAT
1 TATGAATTGATTTATTTTAAATAACTTATTAGTATAGATTGATTTA-TTTAAAATATGAATTGAT
8070005 TTATTATTGTAGTTGTATGAATTGATTTATTTTAAATAATCTATTAGTATGGA-TGA-TTATTTT
65 TTA-TATTGTAGTTGTATGAA-TGATTTATTTTAAAT-ATCTATTAGTA-GGATTGATTTATTTT
8070068 AAA
126 AAA
8070071 TAATTTATTA
Statistics
Matches: 117, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
158 31 0.26
159 45 0.38
160 25 0.21
161 13 0.11
162 3 0.03
ACGTcount: A:0.35, C:0.01, G:0.14, T:0.50
Consensus pattern (159 bp):
TATGAATTGATTTATTTTAAATAACTTATTAGTATAGATTGATTTATTTAAAATATGAATTGATT
TATATTGTAGTTGTATGAATGATTTATTTTAAATATCTATTAGTAGGATTGATTTATTTTAAAAT
ATGGATTGATTATTTAAATAATTTATTAG
Found at i:8070096 original size:18 final size:18
Alignment explanation
Indices: 8070073--8070120 Score: 51
Period size: 22 Copynumber: 2.4 Consensus size: 18
8070063 ATTTTAAATA
*
8070073 ATTTATTAGTATGGATTG
1 ATTTATTAATATGGATTG
8070091 ATTTATTTTAAAATATGGATTG
1 ATTTA--TT--AATATGGATTG
8070113 ATTTATTA
1 ATTTATTA
8070121 TTGTAGTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
18 6 0.24
20 4 0.16
22 15 0.60
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (18 bp):
ATTTATTAATATGGATTG
Found at i:8070107 original size:22 final size:22
Alignment explanation
Indices: 8070082--8070169 Score: 115
Period size: 22 Copynumber: 4.0 Consensus size: 22
8070072 AATTTATTAG
8070082 TATGGATTGATTTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
* **
8070104 TATGGATTGATTTATTATTGTAGT
1 TATGGATTGATTTATT-TT-AAAA
*
8070128 TGTGGATTGA-TTATTTTAAAA
1 TATGGATTGATTTATTTTAAAA
8070149 TATGGATTGATTTATTTTAAA
1 TATGGATTGATTTATTTTAAA
8070170 TAATTTATTA
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
21 10 0.18
22 28 0.51
23 7 0.13
24 10 0.18
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (22 bp):
TATGGATTGATTTATTTTAAAA
Found at i:8074003 original size:16 final size:15
Alignment explanation
Indices: 8073963--8074005 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 15
8073953 CTAATTCAGG
8073963 TTACACATATACATA
1 TTACACATATACATA
8073978 TGCATACACATATACATAA
1 T---TACACATATACAT-A
8073997 TTACACATA
1 TTACACATA
8074006 CAAAGCAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
15 1 0.04
16 8 0.33
18 13 0.54
19 2 0.08
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (15 bp):
TTACACATATACATA
Found at i:8082780 original size:17 final size:17
Alignment explanation
Indices: 8082758--8082798 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
8082748 ATGAACCAAT
8082758 TCTAGAACATGTTTGCC
1 TCTAGAACATGTTTGCC
8082775 TCTAGAACATGTTTGCC
1 TCTAGAACATGTTTGCC
8082792 TCTAGAA
1 TCTAGAA
8082799 TTTGACGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (17 bp):
TCTAGAACATGTTTGCC
Found at i:8085346 original size:16 final size:17
Alignment explanation
Indices: 8085308--8085353 Score: 67
Period size: 18 Copynumber: 2.7 Consensus size: 17
8085298 TGTTTATGAG
*
8085308 GGAATTAGAATCTGTGAA
1 GGAATTGGAATCTGT-AA
8085326 GGAATTGGAATCTGT-A
1 GGAATTGGAATCTGTAA
8085342 GGAATTGGAATC
1 GGAATTGGAATC
8085354 CAATTCCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 13 0.48
18 14 0.52
ACGTcount: A:0.35, C:0.07, G:0.30, T:0.28
Consensus pattern (17 bp):
GGAATTGGAATCTGTAA
Found at i:8086506 original size:23 final size:23
Alignment explanation
Indices: 8086480--8086527 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
8086470 ATAAAGTACA
*
8086480 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
8086503 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
8086526 AT
1 AT
8086528 TGACTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:8087067 original size:23 final size:23
Alignment explanation
Indices: 8086995--8087067 Score: 110
Period size: 23 Copynumber: 3.2 Consensus size: 23
8086985 ATACTTTACA
8086995 ATATAAGCACTACCTATTACATT
1 ATATAAGCACTACCTATTACATT
* * *
8087018 ATACAAACGCTACCTATTACATT
1 ATATAAGCACTACCTATTACATT
*
8087041 ATATAAGCACTACCTATTACATC
1 ATATAAGCACTACCTATTACATT
8087064 ATAT
1 ATAT
8087068 TTTTACCTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.40, C:0.23, G:0.04, T:0.33
Consensus pattern (23 bp):
ATATAAGCACTACCTATTACATT
Found at i:8087520 original size:23 final size:23
Alignment explanation
Indices: 8087492--8087554 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
8087482 ATATAAGCAC
8087492 TACCTATTACATTATATAAACGA
1 TACCTATTACATTATATAAACGA
* * *
8087515 TGCCTATTACATTATATAAGCGC
1 TACCTATTACATTATATAAACGA
*
8087538 TACCTATTACATCATAT
1 TACCTATTACATTATAT
8087555 TTTTACCTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.37, C:0.21, G:0.06, T:0.37
Consensus pattern (23 bp):
TACCTATTACATTATATAAACGA
Found at i:8087563 original size:487 final size:487
Alignment explanation
Indices: 8086601--8088376 Score: 3140
Period size: 480 Copynumber: 3.7 Consensus size: 487
8086591 TTATAATATG
* * *
8086601 TTGAAAGTGTCTATATTTTTTTATAAAAAAGATTGATACTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCTATA-CTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
8086666 TTCAA-TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
65 TTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
* * *
8086730 TAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATAT
130 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
8086795 TAACCAAAGATAATAA-AAATATGT-A-ATATATGTTTA-T-TTTTTAATTTAATAATAATATAT
195 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
8086855 --CGTAACGT-AAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
260 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
* *
8086917 CAAAAGATAACCTTAAATTAATATTTTCCACAATGAAAAAAGTATGGACACTTTTATAAAAAGGA
325 C--AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGA
*
8086982 TAGATACTTTACAATATAAGCACTACCTATTACATTATACAAACGCTACCTATTACATTATATAA
388 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
*
8087047 GCACTACCTATTACATCATATTTTTACCTATTATA
453 GCGCTACCTATTACATCATATTTTTACCTATTATA
8087082 TTGAAAGTGTCTATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCTATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
8087147 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
* *
8087212 CAAAATATTATTTGATTTTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
130 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
8087277 TAACCAAAGATAATAAT-AATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
195 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
8087341 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
260 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
8087406 CAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATA
325 CAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATA
* *
8087471 GATACTTTACAATATAAGCACTACCTATTACATTATATAAACGATGCCTATTACATTATATAAGC
390 GATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGC
8087536 GCTACCTATTACATCATATTTTTACCTATTATA
455 GCTACCTATTACATCATATTTTTACCTATTATA
*
8087569 TTGAAAGTGTATATACTTTTTATAAAAAGGATCGATAC-TTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCTATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
8087633 TCAATTTTGTTTTAATAGTGTTTCATGTTTTCCACCTAAAATATTAATTTAATAATTTCATTTGC
66 TCAA-TTT-TTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGC
8087698 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
129 ACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATA
8087763 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
194 TTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATA
*
8087828 TACCGTAACGTAAAAAATATATCA-T-------TATAATTACTAAATTAATATCTTAAAACTCAC
259 TACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCAC
* * * **
8087885 TCAAGATAACCTTAAATTAATGTTTTCCATAGTGAAAAAAGTATGAACACTTTTTTAAATCGGAT
324 TCAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGAT
8087950 AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
389 AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAG
8088015 CGCTACCTATTACATCATATTTTTACCTATTATA
454 CGCTACCTATTACATCATATTTTTACCTATTATA
*
8088049 TTGAAAGTGTCTATACTTTTTATAAAAAGGATTGATACTTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCTATACTTTTTATAAAAAGGATCGATAC-TTTTTTTAAAGTTATGTAATTTATGT
8088114 TTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
65 TTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
8088179 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
130 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
8088244 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
195 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
8088309 ACCGTAACGTAAAAAATAAATCATTGGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
260 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
8088374 CAA
325 CAA
8088377 AAGATGTACA
Statistics
Matches: 1243, Mismatches: 30, Indels: 37
0.95 0.02 0.03
Matches are distributed among these distances:
480 484 0.39
481 19 0.02
482 172 0.14
483 1 0.00
484 11 0.01
485 1 0.00
486 57 0.05
487 330 0.27
488 113 0.09
489 55 0.04
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (487 bp):
TTGAAAGTGTCTATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATATT
AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
CCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
AAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGGATAG
ATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAGCG
CTACCTATTACATCATATTTTTACCTATTATA
Found at i:8087997 original size:23 final size:23
Alignment explanation
Indices: 8087962--8088034 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
8087952 ATACTTTACA
*
8087962 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
8087985 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
8088008 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
8088031 ATAT
1 ATAT
8088035 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:8091590 original size:183 final size:183
Alignment explanation
Indices: 8090879--8092000 Score: 1943
Period size: 183 Copynumber: 6.1 Consensus size: 183
8090869 TACTTAAAAT
*
8090879 TACCGACACAATATTAAAAAGTGTCGATATAAGTTGTAGACCTATTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
*
8090944 TTTATACCGATTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
8091009 CGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
8091062 TACCGACACAATATTAAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTAT
1 TACCGACACAATATT-AAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTAT
8091127 ATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATG
65 ATTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATG
* *
8091192 TCGAAACTTTTTTA-AATGGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
130 TCGACACTTTTTGACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAG
*
8091246 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCAT-AAACCGGTATA
1 TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
8091310 -TTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
*
8091374 CGACACTTTTTGACAATGTATCGACACATTTTTCTTCCATTCTGGACATAAAG
131 CGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
** *
8091427 TTTCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGATCATAAAACCGGTATA
1 TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
8091492 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
* *
8091557 CGACACTTTTTTA-AATGGTATGGACACATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTGACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAG
*
8091610 TACCGACACAATATTAGAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
1 TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
8091675 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
8091740 CGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
131 CGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
* *
8091793 TTCCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGATATA
1 TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
* * * *
8091858 TTTATACTGGTTATATTACAAAATTATCTATTACATTATAATTATGGGTTCCGATGTTTTTTCAA
66 TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATG---TGTAAA
* *
8091923 --TCGACACTTTTTTA-AATGGTATCGACACATTTTTCTTCCATTCTGGACATAAAG
128 TGTCGACACTTTTTGACAAT-GTATCGACACATTTTTCTTCCAATCTGGACATAAAG
*
8091977 TACAGACACAATATTAAAAAGTGT
1 TACCGACACAATATTAAAAAGTGT
8092001 GAAAACTTTG
Statistics
Matches: 896, Mismatches: 32, Indels: 21
0.94 0.03 0.02
Matches are distributed among these distances:
181 159 0.18
182 28 0.03
183 457 0.51
184 248 0.28
186 4 0.00
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.36
Consensus pattern (183 bp):
TACCGACACAATATTAAAAAGTGTCGATATAGGTTGTAGACCTATTCGCTCATAAAACCGGTATA
TTTATACCGGTTATATTACAAAATTATCTATTACATTATAATTCTGGGTTCCGATGTGTAAATGT
CGACACTTTTTGACAATGTATCGACACATTTTTCTTCCAATCTGGACATAAAG
Found at i:8093308 original size:12 final size:12
Alignment explanation
Indices: 8093211--8093316 Score: 122
Period size: 12 Copynumber: 8.8 Consensus size: 12
8093201 CTTGTTTGGA
* *
8093211 TCATCATCATCA
1 TCATCGTCATCT
* *
8093223 TCATCATCATCA
1 TCATCGTCATCT
* *
8093235 TCGTCATCATCT
1 TCATCGTCATCT
*
8093247 TCATCGTCAGCT
1 TCATCGTCATCT
*
8093259 TCATCGTCATCA
1 TCATCGTCATCT
8093271 TCATCGTCATCT
1 TCATCGTCATCT
8093283 TCATCGTCATCT
1 TCATCGTCATCT
*
8093295 TCATCGTCAGCT
1 TCATCGTCATCT
*
8093307 TCATCTTCAT
1 TCATCGTCAT
8093317 TGACCACTTG
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 83 1.00
ACGTcount: A:0.22, C:0.33, G:0.08, T:0.38
Consensus pattern (12 bp):
TCATCGTCATCT
Found at i:8093316 original size:6 final size:6
Alignment explanation
Indices: 8093210--8093299 Score: 90
Period size: 6 Copynumber: 15.0 Consensus size: 6
8093200 ACTTGTTTGG
* * * *
8093210 ATCATC ATCATC ATCATC ATCATC ATCGTC ATCATC TTCATC GTCAGC
1 ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC
* * * * * *
8093258 TTCATC GTCATC ATCATC GTCATC TTCATC GTCATC TTCATC
1 ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC ATCATC
8093300 GTCAGCTTCA
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 71 1.00
ACGTcount: A:0.23, C:0.33, G:0.07, T:0.37
Consensus pattern (6 bp):
ATCATC
Found at i:8095123 original size:200 final size:200
Alignment explanation
Indices: 8094780--8095962 Score: 2039
Period size: 200 Copynumber: 5.9 Consensus size: 200
8094770 TTTAAATTAG
* * * *
8094780 TATCGACA-AAACATTAAACAGTGTCGATACA-TATTATATACCA-ATTCTCTCATAAAACCGGT
1 TATCGACACAAAC-TAAAAAAGTGTCGACACATTATT-TAGA-CATATTCTCTCATAAAACCGGT
* *
8094842 ATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTTTACTTTTGGTTTTCGATGTTTATG
63 ATACTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTG
*
8094907 GGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCAGCCTGTTTGCCATTCATTCTGG
128 GGATCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGG
8094972 ACCAAAAA
193 ACCAAAAA
* *
8094980 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACCTATTATCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* * *
8095045 ATTGTATCGGTTAGATTGAAAATTTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
* * *
8095110 TCGACACTTTTTATATATGGATCGACACTTTACGGTTGCACCATGTTTGCCATTAATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACC
8095175 AAAAA
196 AAAAA
8095180 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
8095245 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTAGTTTTCAATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
* *
8095310 TCGACATTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTGGCCATTCATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACC
8095375 AAAAA
196 AAAAA
8095380 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
8095445 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
* *
8095510 TCGACACTTTTTATATATGGATCGACTCTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACC
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACC
8095575 AAAAA
196 AAAAA
* *
8095580 TATCGACACAAACTAAAAAAGTGTCGATACATTATTTAGACATATTCTCTTATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
* *
8095645 CTTGTACCAGTTAGATTGAAAAATTACATATTACATTATACTTTTGTTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
* *
8095710 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTTCCATTCATTCTGGACA
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACC
8095775 AAAAA
196 AAAAA
*
8095780 TATCGACACAAACTAAAAAAGTGACGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
1 TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
*
8095845 CTTGTACCAGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
66 CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
* *
8095910 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGTACCCTGTTGGCCAT
131 TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTGCCAT
8095963 ATTGTAAATT
Statistics
Matches: 934, Mismatches: 46, Indels: 6
0.95 0.05 0.01
Matches are distributed among these distances:
199 1 0.00
200 925 0.99
201 8 0.01
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (200 bp):
TATCGACACAAACTAAAAAAGTGTCGACACATTATTTAGACATATTCTCTCATAAAACCGGTATA
CTTGTACCGGTTAGATTGAAAAATTACATATTACATTATACTTTTGGTTTTCGATGTTTTTGGGA
TCGACACTTTTTATATATGGATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACC
AAAAA
Found at i:8096086 original size:18 final size:18
Alignment explanation
Indices: 8096063--8096107 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
8096053 TCTCATTCAT
*
8096063 AATTATATTCACATACAA
1 AATTATAATCACATACAA
**
8096081 AATTATAAATCGTATACAA
1 AATTAT-AATCACATACAA
8096100 AATTATAA
1 AATTATAA
8096108 ATATTATACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.53, C:0.11, G:0.02, T:0.33
Consensus pattern (18 bp):
AATTATAATCACATACAA
Found at i:8096099 original size:19 final size:19
Alignment explanation
Indices: 8096075--8096122 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
8096065 TTATATTCAC
*
8096075 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATAGT
*
8096094 ATACAAAATTATAAATATT
1 ATACAAAATTATAAATAGT
8096113 ATACAAAATT
1 ATACAAAATT
8096123 TACCCTACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATAGT
Found at i:8096712 original size:4 final size:4
Alignment explanation
Indices: 8096703--8096727 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
8096693 AATGTCCTTT
8096703 CATA CATA CATA CATA CATA CATA C
1 CATA CATA CATA CATA CATA CATA C
8096728 CAATCTCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:8097942 original size:33 final size:33
Alignment explanation
Indices: 8097905--8097973 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
8097895 CATCTTAATA
*
8097905 TCACCCCTTAACACCCCA-ACTTCTTTCACCACT
1 TCACCCCTCAACA-CCCATACTTCTTTCACCACT
*
8097938 TCACCCCTCAACACCTATACTTCTTTCACCACT
1 TCACCCCTCAACACCCATACTTCTTTCACCACT
8097971 TCA
1 TCA
8097974 TCTATTTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 3 0.09
33 30 0.91
ACGTcount: A:0.25, C:0.46, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCATACTTCTTTCACCACT
Found at i:8098029 original size:21 final size:21
Alignment explanation
Indices: 8098004--8098068 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
8097994 CCCCTTATGC
* *
8098004 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
8098025 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
*
8098046 CTATCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
8098067 CT
1 CT
8098069 TGATTGTCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.17, C:0.31, G:0.11, T:0.42
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:8100351 original size:20 final size:19
Alignment explanation
Indices: 8100296--8100342 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
8100286 TCCGGTATCA
8100296 TTTTACCAGTTTTATCATT
1 TTTTACCAGTTTTATCATT
* *
8100315 TTGATACCGGTTTTATCATAT
1 TT-TTACCAGTTTTATCAT-T
8100336 TTTTACC
1 TTTTACC
8100343 TGTTATATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.21, C:0.17, G:0.09, T:0.53
Consensus pattern (19 bp):
TTTTACCAGTTTTATCATT
Found at i:8100504 original size:20 final size:20
Alignment explanation
Indices: 8100477--8100523 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
8100467 TCCGGTAACG
8100477 TTTTACCGGTTTTATCAT-T
1 TTTTACCGGTTTTATCATAT
8100496 TTGTTACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCATAT
8100517 TTTTACC
1 TTTTACC
8100524 TGGTATATCG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.55
Consensus pattern (20 bp):
TTTTACCGGTTTTATCATAT
Found at i:8100567 original size:181 final size:182
Alignment explanation
Indices: 8100263--8100736 Score: 707
Period size: 181 Copynumber: 2.6 Consensus size: 182
8100253 AGTACTTACG
* * *
8100263 AAAGTATCGACACTTTCAATATATCCGGTATCATTTTACCAGTTTTATCATTTTGATACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* ** *
8100328 TATCATATTTTTACCTGTTATATCGTTGTGGATCGATATTTTTTTTTAAAGTATCGACACATTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
*
8100393 AGGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATA-T
131 AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
*
8100444 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGTTACCGGTTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
* *
8100509 TATCATATTTTTACCTGGTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACTTTAT
66 TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
** *
8100574 AGGATTTAAAACTGCTTCTCTTTTAAATTCACGAAGTGTCGATCCTTATATT
131 AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
* * * * * ** *
8100626 AAAGTACCGACACTTTAAATGTATTCGGTAGCGTTTTTACCGGTTTTATCATTTCAATACTGGTT
1 AAAGTATCGACACTTTCAATATATCCGGTAACG-TTTTACCGGTTTTATCATTTTGATACCGGTT
* * *
8100691 TTGTCATAGTTTTACCTGTTATATCGTTTTGGATCGACACATTTTT
65 TTATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTT
8100737 AATTTGGATC
Statistics
Matches: 264, Mismatches: 27, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
181 166 0.63
182 29 0.11
183 69 0.26
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (182 bp):
AAAGTATCGACACTTTCAATATATCCGGTAACGTTTTACCGGTTTTATCATTTTGATACCGGTTT
TATCATATTTTTACCTGTTATATCGTTTTGGATCGATACATTTTTTAAAAGTATCGACACATTAT
AGGAGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATCCTTATATT
Found at i:8101547 original size:15 final size:16
Alignment explanation
Indices: 8101517--8101550 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
8101507 ATATTTTATA
8101517 ATAAATAATATTAGAT
1 ATAAATAATATTAGAT
*
8101533 ATAATTAAT-TTAGAT
1 ATAAATAATATTAGAT
8101548 ATA
1 ATA
8101551 TTATTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (16 bp):
ATAAATAATATTAGAT
Found at i:8107701 original size:23 final size:23
Alignment explanation
Indices: 8107675--8107727 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
8107665 TATGGCATTA
*
8107675 CGGTGCAATTCTACGCGGCACTT
1 CGGTGCAATTCTACGCGGAACTT
* *
8107698 CGGTACAATTCTACGTGGAACTT
1 CGGTGCAATTCTACGCGGAACTT
*
8107721 CTGTGCA
1 CGGTGCA
8107728 TTTATACGAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (23 bp):
CGGTGCAATTCTACGCGGAACTT
Found at i:8108803 original size:11 final size:11
Alignment explanation
Indices: 8108787--8108811 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
8108777 TTTTTAACAC
8108787 TTAAAAATGCT
1 TTAAAAATGCT
8108798 TTAAAAATGCT
1 TTAAAAATGCT
8108809 TTA
1 TTA
8108812 TGACAAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (11 bp):
TTAAAAATGCT
Found at i:8111184 original size:52 final size:52
Alignment explanation
Indices: 8111106--8111222 Score: 225
Period size: 52 Copynumber: 2.2 Consensus size: 52
8111096 CATACCCATG
*
8111106 GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACCGTTGGACCCTTA
1 GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACCATTGGACCCTTA
8111158 GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACCATTGGACCCTTA
1 GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACCATTGGACCCTTA
8111210 GTGCATCGGTGCA
1 GTGCATCGGTGCA
8111223 CTAAGAGTGC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (52 bp):
GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACCATTGGACCCTTA
Found at i:8111263 original size:18 final size:17
Alignment explanation
Indices: 8111209--8111257 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
8111199 TTGGACCCTT
* *
8111209 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
8111227 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
8111245 AGTGCATTCGATG
1 AGTGCA-TCGATG
8111258 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:8111362 original size:65 final size:64
Alignment explanation
Indices: 8111229--8111388 Score: 198
Period size: 65 Copynumber: 2.5 Consensus size: 64
8111219 TGCACTAAGA
* * *
8111229 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATGTCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATGTATG
* * * *
8111293 GTGCATCGATGCATCAAATGCATTTGATGTTTTCATAAA-ATCCTCAGTGCATCGGTGCATGGTA
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAGCCACAGTGCATCGATGCAT-GTA
8111357 T-
63 TG
* *
8111358 GTGCATCGATGCATGAAATGCATTCTATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
8111389 GAATTTAATT
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
64 29 0.35
65 48 0.58
66 6 0.07
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATGTATG
Found at i:8113613 original size:14 final size:13
Alignment explanation
Indices: 8113589--8113629 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
8113579 GCCAATATCC
8113589 TTTTTCTTCTTCT
1 TTTTTCTTCTTCT
8113602 TTTTTCTATCTTCT
1 TTTTTCT-TCTTCT
8113616 TCTTTT-TT-TTCT
1 T-TTTTCTTCTTCT
8113628 TT
1 TT
8113630 GAAGCTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 1 0.04
12 5 0.19
13 8 0.31
14 8 0.31
15 4 0.15
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTTCTTCTTCT
Found at i:8115126 original size:65 final size:65
Alignment explanation
Indices: 8114993--8115152 Score: 209
Period size: 65 Copynumber: 2.5 Consensus size: 65
8114983 TGGACCCTTA
* * * *
8114993 GTGCATCGGTGCATCAAGTGCATTCGATG-TTTCAAAATAGCCAGAGTGCATCGATGCATGTCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATGCATGTATG
* * *
8115057 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGGTGCATGGTA
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAATAGCCACAGTGCATCGATGCAT-GTA
8115121 T-
64 TG
*
8115122 GTGCATCGATGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
8115153 CAATTTAATT
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
64 27 0.32
65 52 0.61
66 6 0.07
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATGCATGTATG
Found at i:8115193 original size:65 final size:63
Alignment explanation
Indices: 8114993--8115182 Score: 174
Period size: 65 Copynumber: 3.0 Consensus size: 63
8114983 TGGACCCTTA
* * * * *
8114993 GTGCATCGGTGCATCAAGTGCATTCGATGTTTCA-AAATAGC-CAGAGTGCATCGATGCAT-GTC
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCATAAA-ATCTC--AGTGCACCGATGCATGGTA
8115055 T
63 T
* *
8115056 GGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGGTGCATGGTA
1 -GTGCATCGATGCATCAAATGCATTCGATG-TTTCATAAAAT-CTCAGTGCACCGATGCATGGTA
8115121 T
63 T
* **
8115122 GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTAAT-TCATGGTGCACCGATGCATGG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTC-ATAAAATCTCA--GTGCACCGATGCATGG
8115183 ATTGATGCAT
Statistics
Matches: 108, Mismatches: 10, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
62 3 0.03
63 3 0.03
64 46 0.43
65 48 0.44
66 7 0.06
67 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (63 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCATAAAATCTCAGTGCACCGATGCATGGTAT
Found at i:8117478 original size:46 final size:45
Alignment explanation
Indices: 8117380--8117485 Score: 124
Period size: 45 Copynumber: 2.3 Consensus size: 45
8117370 GTGCACTAAG
* * *
8117380 AGTGCAACGATGCATCAAGTGCATTCGATGTTTCAAAATAGCCAG
1 AGTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCAC
* * *
8117425 AGTGCATCGATGCATCAAATGCATTTGATGTTTTCATAAA-ATCCTC
1 AGTGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAGCCAC
*
8117471 AGTGCATCGGTGCAT
1 AGTGCATCGATGCAT
8117486 GGTATGTGCA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
45 27 0.52
46 22 0.42
47 3 0.06
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (45 bp):
AGTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCAC
Found at i:8118373 original size:52 final size:52
Alignment explanation
Indices: 8118295--8118411 Score: 225
Period size: 52 Copynumber: 2.2 Consensus size: 52
8118285 CATACCCATG
*
8118295 GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACCGTTGGACCCTTA
1 GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACCATTGGACCCTTA
8118347 GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACCATTGGACCCTTA
1 GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACCATTGGACCCTTA
8118399 GTGCATCGGTGCA
1 GTGCATCGGTGCA
8118412 CTAAGAGTGC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (52 bp):
GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACCATTGGACCCTTA
Found at i:8118452 original size:18 final size:17
Alignment explanation
Indices: 8118398--8118446 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
8118388 TTGGACCCTT
* *
8118398 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
8118416 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
8118434 AGTGCATTCGATG
1 AGTGCA-TCGATG
8118447 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:8118551 original size:65 final size:64
Alignment explanation
Indices: 8118418--8118577 Score: 198
Period size: 65 Copynumber: 2.5 Consensus size: 64
8118408 TGCACTAAGA
* * *
8118418 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATGTCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATGTATG
* * * *
8118482 GTGCATCGATGCATCAAATGCATTTGATGTTTTCATAAA-ATCCTCAGTGCATCGGTGCATGGTA
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAGCCACAGTGCATCGATGCAT-GTA
8118546 T-
63 TG
* *
8118547 GTGCATCGATGCATGAAATGCATTCTATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
8118578 GAATTTAATT
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
64 29 0.35
65 48 0.58
66 6 0.07
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCACAGTGCATCGATGCATGTATG
Found at i:8120802 original size:16 final size:16
Alignment explanation
Indices: 8120776--8120818 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
8120766 GCCAATATCC
8120776 TTTTTCTTCTTC-TCT
1 TTTTTCTTCTTCTTCT
8120791 TTTTTCTATCTTCTTCT
1 TTTTTCT-TCTTCTTCT
*
8120808 TTTTTTTTCTT
1 TTTTTCTTCTT
8120819 TGAAGCTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 7 0.28
16 9 0.36
17 9 0.36
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTTTCTTCTTCTTCT
Found at i:8122318 original size:65 final size:65
Alignment explanation
Indices: 8122185--8122344 Score: 209
Period size: 65 Copynumber: 2.5 Consensus size: 65
8122175 TGGACCCTTA
* * * *
8122185 GTGCATCGGTGCATCAAGTGCATTCGATG-TTTCAAAATAGCCAGAGTGCATCGATGCATGTCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATGCATGTATG
* * *
8122249 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-ATCCTCAGTGCATCGGTGCATGGTA
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAATAGCCACAGTGCATCGATGCAT-GTA
8122313 T-
64 TG
*
8122314 GTGCATCGATGCATGAAATGCATTCGATGTT
1 GTGCATCGATGCATCAAATGCATTCGATGTT
8122345 CAATTTAATT
Statistics
Matches: 85, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
64 27 0.32
65 52 0.61
66 6 0.07
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGCCACAGTGCATCGATGCATGTATG
Found at i:8122386 original size:65 final size:63
Alignment explanation
Indices: 8122185--8122374 Score: 192
Period size: 65 Copynumber: 3.0 Consensus size: 63
8122175 TGGACCCTTA
* * * *
8122185 GTGCATCGGTGCATCAAGTGCATTCGATGTTTCA-AAATAGC-CAGAGTGCATCGATGCAT-GTC
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCATAAA-ATCTC--AGTGCATCGATGCATGGTA
8122247 T
63 T
*
8122248 GGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGGTGCATGGTA
1 -GTGCATCGATGCATCAAATGCATTCGATG-TTTCATAAAAT-CTCAGTGCATCGATGCATGGTA
8122313 T
63 T
* **
8122314 GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTAAT-TCATGGTGCATCGATGCATGG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTC-ATAAAATCTCA--GTGCATCGATGCATGG
8122375 ATTGAAGCAT
Statistics
Matches: 109, Mismatches: 9, Indels: 16
0.81 0.07 0.12
Matches are distributed among these distances:
62 3 0.03
63 3 0.03
64 47 0.43
65 48 0.44
66 7 0.06
67 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (63 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCATAAAATCTCAGTGCATCGATGCATGGTAT
Found at i:8123461 original size:21 final size:21
Alignment explanation
Indices: 8123437--8123480 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
8123427 GAGCTGGAGG
* *
8123437 AGGAGGAGCACGAGAGGAGCT
1 AGGAGCAGCACGAGAGGAACT
* *
8123458 AGGAGCAGCTCGTGAGGAACT
1 AGGAGCAGCACGAGAGGAACT
8123479 AG
1 AG
8123481 CTCCCGGAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.43, T:0.09
Consensus pattern (21 bp):
AGGAGCAGCACGAGAGGAACT
Found at i:8130614 original size:52 final size:52
Alignment explanation
Indices: 8130536--8130652 Score: 225
Period size: 52 Copynumber: 2.2 Consensus size: 52
8130526 CATACCCATG
*
8130536 GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACTGTTGGACCCTTA
1 GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACCGTTGGACCCTTA
8130588 GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACCGTTGGACCCTTA
1 GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACCGTTGGACCCTTA
8130640 GTGCATCGGTGCA
1 GTGCATCGGTGCA
8130653 CTAAGAGTGC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (52 bp):
GTGCATCGGTGCATCAGTGTAAAATTCAAATATTTTGACCGTTGGACCCTTA
Found at i:8130756 original size:46 final size:45
Alignment explanation
Indices: 8130658--8130763 Score: 115
Period size: 45 Copynumber: 2.3 Consensus size: 45
8130648 GTGCACTAAG
* * *
8130658 AGTGCATCGTTGCATCAAGTGCATTCGATATTTCAAAATAGCCAG
1 AGTGCATCGATGCATCAAATGCATTCGATATTTCAAAATAGCCAC
* * * *
8130703 AGTGCATCGATGCATCAAATGCATTTGATGTTTTCATAAA-ATCCTC
1 AGTGCATCGATGCATCAAATGCATTCGAT-ATTTCA-AAATAGCCAC
*
8130749 AGTGCATCGGTGCAT
1 AGTGCATCGATGCAT
8130764 GGTATATGCA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
45 26 0.51
46 22 0.43
47 3 0.06
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (45 bp):
AGTGCATCGATGCATCAAATGCATTCGATATTTCAAAATAGCCAC
Found at i:8133028 original size:16 final size:16
Alignment explanation
Indices: 8133002--8133043 Score: 61
Period size: 15 Copynumber: 2.7 Consensus size: 16
8132992 GCCAACATCC
8133002 TTTTTCTTCTTC-TCT
1 TTTTTCTTCTTCTTCT
8133017 TTTTTCTATCTTCTTCT
1 TTTTTCT-TCTTCTTCT
8133034 TTTTT-TTCTT
1 TTTTTCTTCTT
8133044 TGAAGCTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 11 0.44
16 6 0.24
17 8 0.32
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTCTTCTTCTTCT
Found at i:8133030 original size:19 final size:19
Alignment explanation
Indices: 8133006--8133042 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8132996 ACATCCTTTT
8133006 TCTTCTTCTCTTTTTTCTA
1 TCTTCTTCTCTTTTTTCTA
*
8133025 TCTTCTTCTTTTTTTTCT
1 TCTTCTTCTCTTTTTTCT
8133043 TTGAAGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.03, C:0.24, G:0.00, T:0.73
Consensus pattern (19 bp):
TCTTCTTCTCTTTTTTCTA
Found at i:8133703 original size:94 final size:94
Alignment explanation
Indices: 8133602--8133789 Score: 376
Period size: 94 Copynumber: 2.0 Consensus size: 94
8133592 TAATTTGCAC
8133602 CATTGAAGTATGAGGGTCTTGTAATGGATTAAGAATCTTCAATATTGTAGGAGCCAGAAATTGAA
1 CATTGAAGTATGAGGGTCTTGTAATGGATTAAGAATCTTCAATATTGTAGGAGCCAGAAATTGAA
8133667 GCCATATTTATTCGGTTGATTGAATAAAT
66 GCCATATTTATTCGGTTGATTGAATAAAT
8133696 CATTGAAGTATGAGGGTCTTGTAATGGATTAAGAATCTTCAATATTGTAGGAGCCAGAAATTGAA
1 CATTGAAGTATGAGGGTCTTGTAATGGATTAAGAATCTTCAATATTGTAGGAGCCAGAAATTGAA
8133761 GCCATATTTATTCGGTTGATTGAATAAAT
66 GCCATATTTATTCGGTTGATTGAATAAAT
8133790 TGATAGAGCT
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 94 1.00
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34
Consensus pattern (94 bp):
CATTGAAGTATGAGGGTCTTGTAATGGATTAAGAATCTTCAATATTGTAGGAGCCAGAAATTGAA
GCCATATTTATTCGGTTGATTGAATAAAT
Found at i:8144159 original size:23 final size:23
Alignment explanation
Indices: 8144129--8144172 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
8144119 TTTTATTTTA
8144129 ATAATAATATATTCAATTATATT
1 ATAATAATATATTCAATTATATT
8144152 ATAATAATATATTCAATTATA
1 ATAATAATATATTCAATTATA
8144173 GTACAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (23 bp):
ATAATAATATATTCAATTATATT
Found at i:8144184 original size:23 final size:23
Alignment explanation
Indices: 8144131--8144185 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
8144121 TTATTTTAAT
* *
8144131 AATAATATATTCAATTATATTAT
1 AATAATATATTCAATTATAGTAA
8144154 AATAATATATTCAATTATAGTACA
1 AATAATATATTCAATTATAGTA-A
8144178 AAT-ATATA
1 AATAATATA
8144186 ATATTATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 26 0.90
24 3 0.10
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (23 bp):
AATAATATATTCAATTATAGTAA
Found at i:8144697 original size:47 final size:47
Alignment explanation
Indices: 8144643--8144738 Score: 167
Period size: 47 Copynumber: 2.0 Consensus size: 47
8144633 ATGAAAAAAC
8144643 AACCAAAGAACCGAAAAACATGCC-AAAAACATAAGAAAACGTGCCAT
1 AACCAAAGAACCG-AAAACATGCCAAAAAACATAAGAAAACGTGCCAT
*
8144690 AACCAAAGAACCGAAAACATGCCAAAAAACATAAGAAATCGTGCCAT
1 AACCAAAGAACCGAAAACATGCCAAAAAACATAAGAAAACGTGCCAT
8144737 AA
1 AA
8144739 AGACAGATGA
Statistics
Matches: 47, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 10 0.21
47 37 0.79
ACGTcount: A:0.55, C:0.23, G:0.12, T:0.09
Consensus pattern (47 bp):
AACCAAAGAACCGAAAACATGCCAAAAAACATAAGAAAACGTGCCAT
Found at i:8144755 original size:23 final size:22
Alignment explanation
Indices: 8144657--8144755 Score: 67
Period size: 23 Copynumber: 4.4 Consensus size: 22
8144647 AAAGAACCGA
* *
8144657 AAAACATGCC-AAAAACATAAG
1 AAAACGTGCCAAAAAACAGAAG
*
8144678 AAAACGTGCCATAACCAA-AGAACCG
1 AAAACGTGCCA-AA-AAACAGAA--G
* *
8144703 AAAACATGCCAAAAAACATAAG
1 AAAACGTGCCAAAAAACAGAAG
* * *
8144725 AAATCGTGCCATAAAGACAGATG
1 AAAACGTGCCA-AAAAACAGAAG
8144748 AAAACGTG
1 AAAACGTG
8144756 TAATGCAAAC
Statistics
Matches: 59, Mismatches: 12, Indels: 12
0.71 0.14 0.14
Matches are distributed among these distances:
21 9 0.15
22 10 0.17
23 22 0.37
24 7 0.12
25 11 0.19
ACGTcount: A:0.54, C:0.20, G:0.15, T:0.11
Consensus pattern (22 bp):
AAAACGTGCCAAAAAACAGAAG
Found at i:8145057 original size:19 final size:18
Alignment explanation
Indices: 8145033--8145100 Score: 50
Period size: 19 Copynumber: 3.6 Consensus size: 18
8145023 ATATTATTGA
8145033 ATTATTAATAGTGAATAAT
1 ATTATTAATAGT-AATAAT
* *
8145052 ATTATTTAT-GTATTTAAT
1 ATTATTAATAGTA-ATAAT
8145070 ATTAATATAATAGTCTAATAAT
1 ATT-AT-TAATAG--TAATAAT
8145092 ATT-TTAATA
1 ATTATTAATA
8145101 ACAATACTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 12
0.71 0.07 0.22
Matches are distributed among these distances:
17 1 0.03
18 9 0.23
19 15 0.38
20 4 0.10
21 1 0.03
22 7 0.18
23 2 0.05
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (18 bp):
ATTATTAATAGTAATAAT
Found at i:8150651 original size:157 final size:158
Alignment explanation
Indices: 8150364--8150673 Score: 523
Period size: 157 Copynumber: 2.0 Consensus size: 158
8150354 AAACTGATAT
* * *
8150364 TGTAACACCCATAACCCGTATAATTATTCCTATACAGATTATAGATGTCACCTGAATTTCTAAAA
1 TGTAACACCCATAACCCATATAATTATACCTATACAAATTATAGATGTCACCTGAATTTCTAAAA
*
8150429 CCTTTTCCAATTCAAAAGTGATTTAAAATTTATTTTCTTAAAGTATCAAATGATATTATAAAAAT
66 CCATTTCCAATTCAAAAGTGATTTAAAATTTATTTTCTTAAAGTATCAAATGATATTATAAAAAT
8150494 ATCATATCATATGAATTATGTTTATAAA
131 ATCATATCATATGAATTATGTTTATAAA
* * *
8150522 TGTAACACCTATAACCCATATAATTATACCTCTACAAATTATAGATGTCACTTGAATTTCT-AAA
1 TGTAACACCCATAACCCATATAATTATACCTATACAAATTATAGATGTCACCTGAATTTCTAAAA
* * *
8150586 CCATTTCCAATTCAAAAGTGATTTAAATTTTATTTTTTTAAAGTATCAAATGGTATTATAAAAAT
66 CCATTTCCAATTCAAAAGTGATTTAAAATTTATTTTCTTAAAGTATCAAATGATATTATAAAAAT
8150651 ATCATATCATATGAATTATGTTT
131 ATCATATCATATGAATTATGTTT
8150674 CGTTATAACA
Statistics
Matches: 142, Mismatches: 10, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
157 87 0.61
158 55 0.39
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.39
Consensus pattern (158 bp):
TGTAACACCCATAACCCATATAATTATACCTATACAAATTATAGATGTCACCTGAATTTCTAAAA
CCATTTCCAATTCAAAAGTGATTTAAAATTTATTTTCTTAAAGTATCAAATGATATTATAAAAAT
ATCATATCATATGAATTATGTTTATAAA
Found at i:8151220 original size:45 final size:45
Alignment explanation
Indices: 8151157--8151295 Score: 192
Period size: 45 Copynumber: 3.1 Consensus size: 45
8151147 GCATATCCAA
* *
8151157 TATTTTACC-ATATACTTACCATTTATTTTATAAGCTCATAAGCT
1 TATTTTACCAATATACTTACCATTTATTTCATAAGCTCGTAAGCT
** *
8151201 TATTTTACCAATATACTTACCATTTATCCCATAAGCTCGTAAACT
1 TATTTTACCAATATACTTACCATTTATTTCATAAGCTCGTAAGCT
* * *
8151246 TATTTTATCAATATACTTGCCA-TTATTTCATAAGCTTGTAAGCT
1 TATTTTACCAATATACTTACCATTTATTTCATAAGCTCGTAAGCT
8151290 TATTTT
1 TATTTT
8151296 CATGGTTATC
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
44 33 0.40
45 50 0.60
ACGTcount: A:0.31, C:0.19, G:0.06, T:0.45
Consensus pattern (45 bp):
TATTTTACCAATATACTTACCATTTATTTCATAAGCTCGTAAGCT
Found at i:8155640 original size:252 final size:253
Alignment explanation
Indices: 8155194--8155697 Score: 992
Period size: 252 Copynumber: 2.0 Consensus size: 253
8155184 AATTGTTTTC
8155194 AGTCAAACAAACCAACCCTAAGTATGAACCATACAAACTGTAAAGAAAGAGCCCCCAGATCATAT
1 AGTCAAACAAACCAACCCTAAGTATGAACCATACAAACTGTAAAGAAAGAGCCCCCAGATCATAT
8155259 TAAGCTTTGGCAAACACACTTCATCTTATTGATAATTTTTTATGCATATTTTCACTCCAAGCAAG
66 TAAGCTTTGGCAAACACACTTCATCTTATTGATAATTTTTTATGCATATTTTCACTCCAAGCAAG
8155324 TAGCATAATAAATGAGATCAAAGCCTTCCTTTCATTGTTTGGACTCTTTCCCCATGGATATAACC
131 TAGCATAATAAATGAGATCAAAGCCTTCCTTTCATTGTTTGGACTCTTTCCCCATGGATATAACC
*
8155389 ATTCAAAGTGGAATCATGTATCTTTCCTTTGTATTCTTATGATCTTATTGTTTTATGA
196 AATCAAAGTGGAATCATGTATCTTTCCTTTGTATTCTTATGATCTTATTGTTTTATGA
8155447 AGTCAAACAAACCAACCCTAAGTATGAACCATACAAACTGTAAAGAAAGAGCCCCCAGATCATAT
1 AGTCAAACAAACCAACCCTAAGTATGAACCATACAAACTGTAAAGAAAGAGCCCCCAGATCATAT
8155512 TAAGC-TTGGCAAACACACTTCATCTTATTGATAATTTTTTATGCATATTTTCACTCCAAGCAAG
66 TAAGCTTTGGCAAACACACTTCATCTTATTGATAATTTTTTATGCATATTTTCACTCCAAGCAAG
8155576 TAGCATAATAAATGAGATCAAAGCCTTCCTTTCATTGTTTGGACTCTTTCCCCATGGATATAACC
131 TAGCATAATAAATGAGATCAAAGCCTTCCTTTCATTGTTTGGACTCTTTCCCCATGGATATAACC
8155641 AATCAAAGTGGAATCATGTATCTTTCCTTTGTATTCTTATGATCTTATTGTTTTATG
196 AATCAAAGTGGAATCATGTATCTTTCCTTTGTATTCTTATGATCTTATTGTTTTATG
8155698 CTTTTCTATC
Statistics
Matches: 250, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
252 180 0.72
253 70 0.28
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.34
Consensus pattern (253 bp):
AGTCAAACAAACCAACCCTAAGTATGAACCATACAAACTGTAAAGAAAGAGCCCCCAGATCATAT
TAAGCTTTGGCAAACACACTTCATCTTATTGATAATTTTTTATGCATATTTTCACTCCAAGCAAG
TAGCATAATAAATGAGATCAAAGCCTTCCTTTCATTGTTTGGACTCTTTCCCCATGGATATAACC
AATCAAAGTGGAATCATGTATCTTTCCTTTGTATTCTTATGATCTTATTGTTTTATGA
Found at i:8157326 original size:123 final size:122
Alignment explanation
Indices: 8157166--8157398 Score: 317
Period size: 123 Copynumber: 1.9 Consensus size: 122
8157156 TGATCTTAAT
** ** *
8157166 TTACGAAGGGGAGCACTTCCACCCTCAACTCACGGTGCAGAAGAACAATG-CTCCTGCTGAAGGG
1 TTACGAAAAGGAGCACCACCACCCTCAACTCACGGTGCAGAAGAAC-ATGACTCCTGCGGAAGGG
* ** * * *
8157230 TGTCCTGTGAGGAAACACGAGGTGCGAGCCACGGATGAGTTGTCTATGTCCACCATAAC
65 TG-CCCGTGAGGAAACACGAGAAGCGAGCCACAGATGAATCGTCTATGTCCACCATAAC
*
8157289 TTACGAAAAGGAGCACCACCACCCTCAAC-CAATGGTGCAGAAGAACATGACTCCTGCGGAAGGG
1 TTACGAAAAGGAGCACCACCACCCTCAACTC-ACGGTGCAGAAGAACATGACTCCTGCGGAAGGG
8157353 TGCCCGTGAGGAAACACGAGAAGCGAGCCACAGATGAATCGTCTAT
65 TGCCCGTGAGGAAACACGAGAAGCGAGCCACAGATGAATCGTCTAT
8157399 ATCGATTGTA
Statistics
Matches: 96, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
122 42 0.44
123 54 0.56
ACGTcount: A:0.30, C:0.26, G:0.27, T:0.17
Consensus pattern (122 bp):
TTACGAAAAGGAGCACCACCACCCTCAACTCACGGTGCAGAAGAACATGACTCCTGCGGAAGGGT
GCCCGTGAGGAAACACGAGAAGCGAGCCACAGATGAATCGTCTATGTCCACCATAAC
Found at i:8160638 original size:21 final size:21
Alignment explanation
Indices: 8160614--8160653 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8160604 TTTATTTTAT
8160614 AACTTTATTTCAATTATCGTA
1 AACTTTATTTCAATTATCGTA
*
8160635 AACTTTGTTTCAATTATCG
1 AACTTTATTTCAATTATCG
8160654 AACTTGAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.47
Consensus pattern (21 bp):
AACTTTATTTCAATTATCGTA
Found at i:8160701 original size:33 final size:33
Alignment explanation
Indices: 8160648--8160746 Score: 164
Period size: 33 Copynumber: 3.0 Consensus size: 33
8160638 TTTGTTTCAA
8160648 TTATCGAACTT-GAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
8160680 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
* * *
8160713 TTATCAAACTTGGAAGTATTTAAGTATTTCAAT
1 TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
8160746 T
1 T
8160747 ATGTTGAGTT
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
32 11 0.17
33 52 0.83
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.45
Consensus pattern (33 bp):
TTATCGAACTTGGAAGTTTTTAAGTATTTGAAT
Found at i:8160775 original size:13 final size:13
Alignment explanation
Indices: 8160732--8160786 Score: 58
Period size: 13 Copynumber: 4.2 Consensus size: 13
8160722 TTGGAAGTAT
8160732 TTAAGTATTTCAA
1 TTAAGTATTTCAA
* *
8160745 TTATGTTGAGTT-AA
1 TTAAG-T-ATTTCAA
8160759 TTAAGTATTTCAA
1 TTAAGTATTTCAA
*
8160772 TTAAGTATTTGAA
1 TTAAGTATTTCAA
8160785 TT
1 TT
8160787 TATCGAACTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.09
13 21 0.62
14 7 0.21
15 3 0.09
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.49
Consensus pattern (13 bp):
TTAAGTATTTCAA
Found at i:8161245 original size:21 final size:18
Alignment explanation
Indices: 8161200--8161233 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8161190 GGTTTTTTAT
8161200 AACCGG-TTTTTTAAAAA
1 AACCGGTTTTTTTAAAAA
8161217 AACCGGTTTTTTTAAAA
1 AACCGGTTTTTTTAAAA
8161234 CCGAAACCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (18 bp):
AACCGGTTTTTTTAAAAA
Found at i:8161353 original size:15 final size:17
Alignment explanation
Indices: 8161327--8161358 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
8161317 TTCTATGGGA
8161327 AAAAACCGGAT-CGGAT
1 AAAAACCGGATCCGGAT
8161343 AAAAACC-GATCCGGAT
1 AAAAACCGGATCCGGAT
8161359 CGGATTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.20
16 12 0.80
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (17 bp):
AAAAACCGGATCCGGAT
Found at i:8164178 original size:21 final size:21
Alignment explanation
Indices: 8164152--8164261 Score: 120
Period size: 21 Copynumber: 5.3 Consensus size: 21
8164142 AATTCTGACT
8164152 ATCGCAACGCGATAATACATA
1 ATCGCAACGCGATAATACATA
8164173 ATCGCAACGCGATAATACATA
1 ATCGCAACGCGATAATACATA
**
8164194 ATCGCAACGCGATTCTGAC--A
1 ATCGCAACGCGATAAT-ACATA
**
8164214 ATCGCAACGCGATTCTGAC-T-
1 ATCGCAACGCGATAAT-ACATA
* *
8164234 ATCGCAACGAGATAATACAAA
1 ATCGCAACGCGATAATACATA
8164255 ATCGCAA
1 ATCGCAA
8164262 TACGATTTTC
Statistics
Matches: 79, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
19 2 0.03
20 33 0.42
21 42 0.53
22 2 0.03
ACGTcount: A:0.39, C:0.25, G:0.16, T:0.19
Consensus pattern (21 bp):
ATCGCAACGCGATAATACATA
Found at i:8164437 original size:22 final size:22
Alignment explanation
Indices: 8164412--8164484 Score: 119
Period size: 22 Copynumber: 3.3 Consensus size: 22
8164402 CTACGGTGAC
8164412 ATCCGTCCCCATCTCCGACGAA
1 ATCCGTCCCCATCTCCGACGAA
*
8164434 ATCCATCCCCATCTCCGACGAA
1 ATCCGTCCCCATCTCCGACGAA
* *
8164456 ATCCGTCCCCATCTCTGGCGAA
1 ATCCGTCCCCATCTCCGACGAA
8164478 ATCCGTC
1 ATCCGTC
8164485 TATCTCCATC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.22, C:0.44, G:0.14, T:0.21
Consensus pattern (22 bp):
ATCCGTCCCCATCTCCGACGAA
Found at i:8164884 original size:20 final size:20
Alignment explanation
Indices: 8164859--8164980 Score: 92
Period size: 20 Copynumber: 6.2 Consensus size: 20
8164849 AAAATCGCAA
*
8164859 CGATAGTCAAATTCGCGTTG
1 CGATAGTCAATTTCGCGTTG
*
8164879 CGATAGT-AATTTTCGTGTT-
1 CGATAGTCAA-TTTCGCGTTG
*
8164898 -GATAGT-AATTTTCGTGTTG
1 CGATAGTCAA-TTTCGCGTTG
** *
8164917 CGATTTTC-ATTTCTCGTTG
1 CGATAGTCAATTTCGCGTTG
* *
8164936 CGATAGTCAAATTCACGTTG
1 CGATAGTCAATTTCGCGTTG
* *
8164956 CGATAGTCATTTTTCGTGTTG
1 CGATAGTCA-ATTTCGCGTTG
8164977 CGAT
1 CGAT
8164981 TTTAAGTTTC
Statistics
Matches: 82, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
18 18 0.22
19 16 0.20
20 37 0.45
21 11 0.13
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.42
Consensus pattern (20 bp):
CGATAGTCAATTTCGCGTTG
Found at i:8164966 original size:39 final size:39
Alignment explanation
Indices: 8164859--8164968 Score: 118
Period size: 39 Copynumber: 2.8 Consensus size: 39
8164849 AAAATCGCAA
*
8164859 CGATAGTCAAATTCGCGTTGCGATAGTAATTTTCG-TGT
1 CGATAGTCAAATTCGCGTTGCGATAGTCATTTTCGTTGT
* * * **
8164897 TGATAGT-AATTTTCGTGTTGCGATTTTCATTTCTCGTTG-
1 CGATAGTCAA-ATTCGCGTTGCGATAGTCATTT-TCGTTGT
*
8164936 CGATAGTCAAATTCACGTTGCGATAGTCATTTT
1 CGATAGTCAAATTCGCGTTGCGATAGTCATTTT
8164969 TCGTGTTGCG
Statistics
Matches: 56, Mismatches: 12, Indels: 8
0.74 0.16 0.11
Matches are distributed among these distances:
37 2 0.04
38 24 0.43
39 26 0.46
40 4 0.07
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (39 bp):
CGATAGTCAAATTCGCGTTGCGATAGTCATTTTCGTTGT
Found at i:8167065 original size:20 final size:20
Alignment explanation
Indices: 8167040--8167106 Score: 91
Period size: 20 Copynumber: 3.4 Consensus size: 20
8167030 GATTATCTCA
*
8167040 TTGCGATAGTCAAATTCGCG
1 TTGCGATAGTCAATTTCGCG
*
8167060 TTGCGATATTC-ATTTCCGCG
1 TTGCGATAGTCAATTT-CGCG
*
8167080 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCAATTTCGCG
8167100 TTGCGAT
1 TTGCGAT
8167107 TTAAGTTTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
19 3 0.07
20 35 0.85
21 3 0.07
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (20 bp):
TTGCGATAGTCAATTTCGCG
Found at i:8167115 original size:20 final size:20
Alignment explanation
Indices: 8167054--8167135 Score: 78
Period size: 20 Copynumber: 4.2 Consensus size: 20
8167044 GATAGTCAAA
*
8167054 TTCGCGTTGCGATATTCATT
1 TTCGCGTTGCGATATTAATT
* * *
8167074 TCCGCGTTGCGATAGTCATT
1 TTCGCGTTGCGATATTAATT
8167094 TTCGCGTTGCGAT-TTAAGTT
1 TTCGCGTTGCGATATTAA-TT
* * *
8167114 TT-GTGTTGCGATTTTAAGT
1 TTCGCGTTGCGATATTAATT
8167133 TTC
1 TTC
8167136 AGAAACTATT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
19 14 0.27
20 38 0.73
ACGTcount: A:0.15, C:0.17, G:0.23, T:0.45
Consensus pattern (20 bp):
TTCGCGTTGCGATATTAATT
Found at i:8167690 original size:21 final size:21
Alignment explanation
Indices: 8167619--8167722 Score: 75
Period size: 21 Copynumber: 5.0 Consensus size: 21
8167609 CACATGTCAT
* * *
8167619 CGTTCAAGAGGCCTCTCCTAT
1 CGTTCAAGAGGCCCCTCCCAC
**
8167640 CGTTCAAGAGGCCCCTATCATC
1 CGTTCAAGAGGCCCCTCCCA-C
* *
8167662 CCTT-AAGAGTCCCCTCCCAC
1 CGTTCAAGAGGCCCCTCCCAC
* ** *
8167682 CGTTCAAGAGGCCTCTGTCAT
1 CGTTCAAGAGGCCCCTCCCAC
* *
8167703 CGTTGAAGAGGTCCCTCCCA
1 CGTTCAAGAGGCCCCTCCCA
8167723 ACATTCTAGA
Statistics
Matches: 61, Mismatches: 20, Indels: 4
0.72 0.24 0.05
Matches are distributed among these distances:
20 4 0.07
21 54 0.89
22 3 0.05
ACGTcount: A:0.20, C:0.37, G:0.19, T:0.24
Consensus pattern (21 bp):
CGTTCAAGAGGCCCCTCCCAC
Found at i:8167712 original size:42 final size:41
Alignment explanation
Indices: 8167613--8167722 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 41
8167603 CCGACTCACA
* * * *
8167613 TGTCATCGTTCAAGAGGCCTCTCCTATCGTTCAAGAGGCCCC
1 TGTCATCGTT-AAGAGTCCCCTCCCACCGTTCAAGAGGCCCC
* * *
8167655 TATCATCCCTTAAGAGTCCCCTCCCACCGTTCAAGAGGCCTC
1 TGTCAT-CGTTAAGAGTCCCCTCCCACCGTTCAAGAGGCCCC
8167697 TGTCATCGTTGAAGAGGT-CCCTCCCA
1 TGTCATCGTT-AAGA-GTCCCCTCCCA
8167723 ACATTCTAGA
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
41 3 0.05
42 48 0.86
43 5 0.09
ACGTcount: A:0.20, C:0.35, G:0.19, T:0.25
Consensus pattern (41 bp):
TGTCATCGTTAAGAGTCCCCTCCCACCGTTCAAGAGGCCCC
Found at i:8169138 original size:14 final size:14
Alignment explanation
Indices: 8169119--8169155 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
8169109 TTGCTTGTTT
8169119 AATTGATTTGTAAA
1 AATTGATTTGTAAA
8169133 AATTGATTTGTAAA
1 AATTGATTTGTAAA
*
8169147 AGTTGATTT
1 AATTGATTT
8169156 ATTTAATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.46
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:8169304 original size:20 final size:20
Alignment explanation
Indices: 8169279--8169332 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
8169269 AGGTACACTT
*
8169279 TCGCAACGCTAAA-CTAAAAA
1 TCGCAACGCGAAAGC-AAAAA
* *
8169299 TCGCAATGCGAAAGCCAAAA
1 TCGCAACGCGAAAGCAAAAA
8169319 TCGCAACGCGAAAG
1 TCGCAACGCGAAAG
8169333 TCAATTTGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 28 0.97
21 1 0.03
ACGTcount: A:0.44, C:0.26, G:0.19, T:0.11
Consensus pattern (20 bp):
TCGCAACGCGAAAGCAAAAA
Found at i:8169400 original size:20 final size:20
Alignment explanation
Indices: 8169375--8169511 Score: 202
Period size: 20 Copynumber: 6.8 Consensus size: 20
8169365 GTGATTTTCT
* * *
8169375 CGTTGCGATAGTCGAATACC
1 CGTTGCGATAGTCAAATTCG
* * *
8169395 CGTTGCGATAATCAAATACA
1 CGTTGCGATAGTCAAATTCG
8169415 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
8169435 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
8169455 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
8169475 CGTTGCGATAATCAAATTCG
1 CGTTGCGATAGTCAAATTCG
*
8169495 CGTTGCGATATTCAAAT
1 CGTTGCGATAGTCAAAT
8169512 GAATGTGTAA
Statistics
Matches: 109, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 109 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (20 bp):
CGTTGCGATAGTCAAATTCG
Found at i:8169697 original size:12 final size:12
Alignment explanation
Indices: 8169682--8169712 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8169672 AAGCCGGTTG
*
8169682 TGATTGGGATTT
1 TGATTGCGATTT
8169694 TGATTGCGATTT
1 TGATTGCGATTT
8169706 TGATTGC
1 TGATTGC
8169713 CTTTTTCTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.06, G:0.29, T:0.48
Consensus pattern (12 bp):
TGATTGCGATTT
Found at i:8172003 original size:24 final size:24
Alignment explanation
Indices: 8171969--8172022 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
8171959 CTGAAACATC
8171969 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
*
8171993 ATCAAAGTCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
8172017 ATCAAA
1 ATCAAA
8172023 TTTTGAATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:8172036 original size:24 final size:24
Alignment explanation
Indices: 8171969--8172036 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
8171959 CTGAAACATC
* * *
8171969 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* *
8171993 ATCAAAGTCCGAGTATTGACCAAG
1 ATCAAAGTCCGAATACTGACCAAG
* **
8172017 ATCAAATTTTGAATACTGAC
1 ATCAAAGTCCGAATACTGAC
8172037 TAGTACTTAC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (24 bp):
ATCAAAGTCCGAATACTGACCAAG
Found at i:8172868 original size:20 final size:20
Alignment explanation
Indices: 8172843--8172972 Score: 138
Period size: 20 Copynumber: 6.4 Consensus size: 20
8172833 GAAATTCAGT
*
8172843 GTTGCGACAGTCAGAATCGC
1 GTTGCGATAGTCAGAATCGC
8172863 GTTGCGATAGTCAGAATCGC
1 GTTGCGATAGTCAGAATCGC
* **
8172883 ATTGCGATTATGT-ATTATCGC
1 GTTGCGA-TA-GTCAGAATCGC
*
8172904 GTTGCAATAGTCAGAATCGC
1 GTTGCGATAGTCAGAATCGC
* **
8172924 GTTGTGATTATGT-ATTATCGC
1 GTTGCGA-TA-GTCAGAATCGC
8172945 GTTGCGATAGTCAGAATCGC
1 GTTGCGATAGTCAGAATCGC
8172965 GTTGCGAT
1 GTTGCGAT
8172973 TTACATATTC
Statistics
Matches: 89, Mismatches: 15, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
19 4 0.04
20 54 0.61
21 27 0.30
22 4 0.04
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (20 bp):
GTTGCGATAGTCAGAATCGC
Found at i:8172903 original size:41 final size:41
Alignment explanation
Indices: 8172858--8172973 Score: 205
Period size: 41 Copynumber: 2.8 Consensus size: 41
8172848 GACAGTCAGA
*
8172858 ATCGCGTTGCGATAGTCAGAATCGCATTGCGATTATGTATT
1 ATCGCGTTGCGATAGTCAGAATCGCGTTGCGATTATGTATT
* *
8172899 ATCGCGTTGCAATAGTCAGAATCGCGTTGTGATTATGTATT
1 ATCGCGTTGCGATAGTCAGAATCGCGTTGCGATTATGTATT
8172940 ATCGCGTTGCGATAGTCAGAATCGCGTTGCGATT
1 ATCGCGTTGCGATAGTCAGAATCGCGTTGCGATT
8172974 TACATATTCG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (41 bp):
ATCGCGTTGCGATAGTCAGAATCGCGTTGCGATTATGTATT
Found at i:8173100 original size:20 final size:19
Alignment explanation
Indices: 8173077--8173122 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
8173067 GGAAACTAAT
*
8173077 TTGCGATACTAGAGATCGCG
1 TTGCGAT-CTAGAGATCGCA
*
8173097 TTGCGATTTAGAGATCGCA
1 TTGCGATCTAGAGATCGCA
8173116 TTGCGAT
1 TTGCGAT
8173123 TTTGTTGGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.30
Consensus pattern (19 bp):
TTGCGATCTAGAGATCGCA
Found at i:8173110 original size:19 final size:19
Alignment explanation
Indices: 8173086--8173124 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
8173076 TTTGCGATAC
*
8173086 TAGAGATCGCGTTGCGATT
1 TAGAGATCGCATTGCGATT
8173105 TAGAGATCGCATTGCGATT
1 TAGAGATCGCATTGCGATT
8173124 T
1 T
8173125 TGTTGGTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (19 bp):
TAGAGATCGCATTGCGATT
Found at i:8184373 original size:165 final size:167
Alignment explanation
Indices: 8184102--8184434 Score: 620
Period size: 165 Copynumber: 2.0 Consensus size: 167
8184092 ATCACTTAAG
8184102 TTGCGTTTCATAACTTTTACTGGTACACAACATCCTGTTTATTTGGATTTCTTAATTAATCCAAG
1 TTGCGTTTCATAACTTTTACTGGTACACAACATCCTGTTTATTTGGATTTCTTAATTAATCCAAG
8184167 ACATTTACTTATTCTAGGTCATAAGGGCATTTTGGTTCTCAACGTTTTTCTATTCATTACAAAGC
66 ACATTTACTTATTCTAGGTCATAAGGGCATTTTGGTTCTCAACGTTTTTCTATTCATTACAAAGC
8184232 -TTGAGTATA-CCATTCATTCAT-AGCTTGGTGACAT
131 TTTGAGTATATCCATTCATTCATGAGCTTGGTGACAT
8184266 TTGCG-TTCATAACTTTTACTGGTAGCACAACATCCATGTTTATTTGGATTTCTTAATTAATCCA
1 TTGCGTTTCATAACTTTTACTGGTA-CACAACATCC-TGTTTATTTGGATTTCTTAATTAATCCA
8184330 AGACATTTACTTATTCTAGGTCATAAGGGCATTTTGGTTCTCAACGTTTTTCTATTCATTACAAA
64 AGACATTTACTTATTCTAGGTCATAAGGGCATTTTGGTTCTCAACGTTTTTCTATTCATTACAAA
8184395 GCTTTGAGTATATCCATTCATTCATGAGCTTGGTGACAT
129 GCTTTGAGTATATCCATTCATTCATGAGCTTGGTGACAT
8184434 T
1 T
8184435 CTTGAGTCAT
Statistics
Matches: 164, Mismatches: 0, Indels: 6
0.96 0.00 0.04
Matches are distributed among these distances:
163 19 0.12
164 15 0.09
165 95 0.58
166 9 0.05
167 12 0.07
168 14 0.09
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.41
Consensus pattern (167 bp):
TTGCGTTTCATAACTTTTACTGGTACACAACATCCTGTTTATTTGGATTTCTTAATTAATCCAAG
ACATTTACTTATTCTAGGTCATAAGGGCATTTTGGTTCTCAACGTTTTTCTATTCATTACAAAGC
TTTGAGTATATCCATTCATTCATGAGCTTGGTGACAT
Found at i:8191822 original size:3 final size:3
Alignment explanation
Indices: 8191816--8191861 Score: 51
Period size: 3 Copynumber: 16.0 Consensus size: 3
8191806 TATTATTTAA
* * *
8191816 ATT ATT AGT ATT ATT ATT ATT ATT AAT ATT -TT ATT AAT ATT -TT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8191862 TACAATTTAC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
2 4 0.11
3 31 0.89
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:8191851 original size:11 final size:11
Alignment explanation
Indices: 8191824--8191861 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
8191814 AAATTATTAG
*
8191824 TATTATTATTAT
1 TATTAATATT-T
8191836 TATTAATATTT
1 TATTAATATTT
8191847 TATTAATATTT
1 TATTAATATTT
8191858 TATT
1 TATT
8191862 TACAATTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 16 0.64
12 9 0.36
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
TATTAATATTT
Found at i:8193308 original size:30 final size:29
Alignment explanation
Indices: 8193241--8193434 Score: 128
Period size: 30 Copynumber: 6.5 Consensus size: 29
8193231 TTTATTTGTA
*
8193241 ATTACTTTAAGTCCTTTAAGTTTCTAT-TTTT
1 ATTA-TTTTAGTCCTTTAAGTTT-T-TGTTTT
* *
8193272 GTTATTTTAGTCTTTTAAGTTTTTGTTTT
1 ATTATTTTAGTCCTTTAAGTTTTTGTTTT
* * *
8193301 ATATATTTTAGCCCTTAAAGTTTCTGTTAATT
1 AT-TATTTTAGTCCTTTAAGTTTTTGTT--TT
*
8193333 ATT-GTTTAGTCCTTTAA-TTTTTGTTTCT
1 ATTATTTTAGTCCTTTAAGTTTTTGTTT-T
* * **
8193361 -TCTAATTTAGCCCTTTAAAATTTTGTTTT
1 AT-TATTTTAGTCCTTTAAGTTTTTGTTTT
* * *
8193390 ATTTATTTTAGTCC-TTAAGATTCTATTTT
1 A-TTATTTTAGTCCTTTAAGTTTTTGTTTT
*
8193419 TTTCATTTTAGTCCTT
1 ATT-ATTTTAGTCCTT
8193435 GAGGTTTCTA
Statistics
Matches: 130, Mismatches: 21, Indels: 25
0.74 0.12 0.14
Matches are distributed among these distances:
27 2 0.02
28 5 0.04
29 48 0.37
30 66 0.51
31 5 0.04
32 4 0.03
ACGTcount: A:0.21, C:0.11, G:0.09, T:0.59
Consensus pattern (29 bp):
ATTATTTTAGTCCTTTAAGTTTTTGTTTT
Found at i:8193400 original size:59 final size:60
Alignment explanation
Indices: 8193273--8193405 Score: 150
Period size: 59 Copynumber: 2.2 Consensus size: 60
8193263 TCTATTTTTG
* * *
8193273 TTATTTTAGTCTTTTAAGTTTTTGTTTTATATATTTTAGCCCTTAAAGTTTCTGTTAATTA
1 TTATTTTAGTCCTTTAAGTTTTTGTTTTATATAATTTAGCCCTTAAAATTTCTGTT-ATTA
* *
8193334 TT-GTTTAGTCCTTTAA-TTTTTGTTTCT-TCTAATTTAGCCCTTTAAAATTT-TGTT-TTA
1 TTATTTTAGTCCTTTAAGTTTTTGTTT-TATATAATTTAGCCC-TTAAAATTTCTGTTATTA
8193391 TTTATTTTAGTCCTT
1 -TTATTTTAGTCCTT
8193406 AAGATTCTAT
Statistics
Matches: 62, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
57 3 0.05
58 2 0.03
59 34 0.55
60 21 0.34
61 2 0.03
ACGTcount: A:0.20, C:0.11, G:0.09, T:0.60
Consensus pattern (60 bp):
TTATTTTAGTCCTTTAAGTTTTTGTTTTATATAATTTAGCCCTTAAAATTTCTGTTATTA
Found at i:8193448 original size:29 final size:29
Alignment explanation
Indices: 8193386--8193450 Score: 87
Period size: 29 Copynumber: 2.2 Consensus size: 29
8193376 TAAAATTTTG
8193386 TTTTATTT-ATTTTAGTCCTTAAGATTCTA
1 TTTT-TTTCATTTTAGTCCTTAAGATTCTA
* *
8193415 TTTTTTTCATTTTAGTCCTTGAGGTTTCTA
1 TTTTTTTCATTTTAGTCCTT-AAGATTCTA
8193445 TTTTTT
1 TTTTTT
8193451 ACTTTTTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
28 3 0.09
29 16 0.50
30 13 0.41
ACGTcount: A:0.17, C:0.11, G:0.09, T:0.63
Consensus pattern (29 bp):
TTTTTTTCATTTTAGTCCTTAAGATTCTA
Found at i:8193458 original size:30 final size:29
Alignment explanation
Indices: 8193394--8193463 Score: 86
Period size: 30 Copynumber: 2.4 Consensus size: 29
8193384 TGTTTTATTT
*
8193394 ATTTTAGTCCTTAAGATTCTATTTTTTTC
1 ATTTTAGTCCTTAAGATTCTATTTTTTAC
* *
8193423 ATTTTAGTCCTTGAGGTTTCTATTTTTTAC
1 ATTTTAGTCCTT-AAGATTCTATTTTTTAC
* *
8193453 TTTTTAATCCT
1 ATTTTAGTCCT
8193464 CTTAACTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
29 12 0.34
30 23 0.66
ACGTcount: A:0.19, C:0.14, G:0.09, T:0.59
Consensus pattern (29 bp):
ATTTTAGTCCTTAAGATTCTATTTTTTAC
Found at i:8193483 original size:30 final size:30
Alignment explanation
Indices: 8193449--8193506 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 30
8193439 TTTCTATTTT
8193449 TTACT-TTTTAATCC-TCTTAACTTTATGTAA
1 TTACTGTTTT-ATCCAT-TTAACTTTATGTAA
*
8193479 TTACTGTTTTATCCATTTAAGTTTATGT
1 TTACTGTTTTATCCATTTAACTTTATGT
8193507 TTTGGCCACA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.24, C:0.14, G:0.07, T:0.55
Consensus pattern (30 bp):
TTACTGTTTTATCCATTTAACTTTATGTAA
Found at i:8193604 original size:31 final size:30
Alignment explanation
Indices: 8193540--8193609 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 30
8193530 TTCCTATTTG
* * *
8193540 TACTATTTTTGTCCTTTGAGTTTATGTGTT
1 TACTATTTTGGTCCTTTAAGTTTATATGTT
8193570 TACTATTTTGGTCCTTGTAAGTTTATAT-TCT
1 TACTATTTTGGTCCTT-TAAGTTTATATGT-T
8193601 TACT-TTTTG
1 TACTATTTTG
8193610 CTCATTTGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 21 0.60
31 14 0.40
ACGTcount: A:0.16, C:0.11, G:0.14, T:0.59
Consensus pattern (30 bp):
TACTATTTTGGTCCTTTAAGTTTATATGTT
Done.