Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007960.1 Hibiscus syriacus cultivar Beakdansim tig00110387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7905731
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 23 of 39
Found at i:4608017 original size:8 final size:8
Alignment explanation
Indices: 4607342--4609580 Score: 1527
Period size: 8 Copynumber: 281.4 Consensus size: 8
4607332 AAGTTGCTAT
4607342 ATACATAC
1 ATACATAC
4607350 ATACATAC
1 ATACATAC
4607358 ATACATAC
1 ATACATAC
4607366 ATACATAC
1 ATACATAC
4607374 ATACATAC
1 ATACATAC
4607382 ATACATAC
1 ATACATAC
4607390 ATACATAC
1 ATACATAC
4607398 ATACATAC
1 ATACATAC
4607406 ATACATAC
1 ATACATAC
4607414 ATACATAC
1 ATACATAC
4607422 ATACATAC
1 ATACATAC
4607430 ATACATAC
1 ATACATAC
4607438 ATACATAC
1 ATACATAC
4607446 ATACATAC
1 ATACATAC
4607454 ATACATAC
1 ATACATAC
4607462 ATACATAC
1 ATACATAC
4607470 ATACATAC
1 ATACATAC
4607478 ATACATAC
1 ATACATAC
4607486 ATACATAC
1 ATACATAC
4607494 ATACATAC
1 ATACATAC
4607502 ATACATAC
1 ATACATAC
4607510 ATACATAC
1 ATACATAC
4607518 ATACATAC
1 ATACATAC
4607526 ATACATAC
1 ATACATAC
4607534 ATAC--AC
1 ATACATAC
4607540 ATACA-AC
1 ATACATAC
4607547 ATACATAC
1 ATACATAC
4607555 ATACATAC
1 ATACATAC
4607563 ATACATAC
1 ATACATAC
4607571 ATACATAC
1 ATACATAC
4607579 ATACATAC
1 ATACATAC
4607587 ATACATAC
1 ATACATAC
4607595 ATACATAC
1 ATACATAC
4607603 ATACATAC
1 ATACATAC
4607611 ATACATAC
1 ATACATAC
4607619 ATACATAC
1 ATACATAC
4607627 ATACATAC
1 ATACATAC
4607635 ATACATAC
1 ATACATAC
4607643 ATACATAC
1 ATACATAC
4607651 ATACATAC
1 ATACATAC
4607659 ATACATAC
1 ATACATAC
*
4607667 AACACATAC
1 -ATACATAC
4607676 ATACATAC
1 ATACATAC
4607684 ATACATAC
1 ATACATAC
4607692 ATACATAC
1 ATACATAC
4607700 ATACATAC
1 ATACATAC
4607708 -TACATAC
1 ATACATAC
4607715 ATACATAC
1 ATACATAC
4607723 ATACATAC
1 ATACATAC
4607731 ATACATAC
1 ATACATAC
4607739 ATACATAC
1 ATACATAC
4607747 ATACATAC
1 ATACATAC
4607755 ATACATAC
1 ATACATAC
4607763 ATACATAC
1 ATACATAC
4607771 --ACATAC
1 ATACATAC
4607777 ATACATAC
1 ATACATAC
4607785 ATACATAC
1 ATACATAC
4607793 ATACATAC
1 ATACATAC
4607801 ATACATAC
1 ATACATAC
4607809 ATACATAC
1 ATACATAC
4607817 ATACATAC
1 ATACATAC
4607825 ATACATAC
1 ATACATAC
4607833 ATACATAC
1 ATACATAC
4607841 ATACATAC
1 ATACATAC
4607849 ATACATAC
1 ATACATAC
4607857 ATACATAC
1 ATACATAC
4607865 ATACATAC
1 ATACATAC
4607873 ATACATAC
1 ATACATAC
4607881 ATACATAC
1 ATACATAC
4607889 ATACATAC
1 ATACATAC
4607897 ATACATAC
1 ATACATAC
4607905 ATACATAC
1 ATACATAC
4607913 ATACATAC
1 ATACATAC
4607921 ATACATAC
1 ATACATAC
4607929 ATACATAC
1 ATACATAC
4607937 ATACATAC
1 ATACATAC
4607945 ATACATAC
1 ATACATAC
4607953 ATACATAC
1 ATACATAC
4607961 ATACATAC
1 ATACATAC
4607969 ATACATAC
1 ATACATAC
4607977 ATACATAC
1 ATACATAC
4607985 ATACATAC
1 ATACATAC
4607993 ATACATAC
1 ATACATAC
4608001 ATACATAC
1 ATACATAC
*
4608009 ATACCTAC
1 ATACATAC
4608017 ATACAATAC
1 ATAC-ATAC
*
4608026 ATAC-CAC
1 ATACATAC
4608033 ATAC--AC
1 ATACATAC
*
4608039 ATAC-CAC
1 ATACATAC
**
4608046 CCACATAC
1 ATACATAC
4608054 ATACATAC
1 ATACATAC
4608062 ATACATAC
1 ATACATAC
*
4608070 CTACATAC
1 ATACATAC
4608078 ATACATAC
1 ATACATAC
*
4608086 AT-CATCC
1 ATACATAC
*
4608093 ATACACAC
1 ATACATAC
*
4608101 A-CCATACC
1 ATACATA-C
4608109 ATAC--AC
1 ATACATAC
*
4608115 ATCCATAC
1 ATACATAC
* *
4608123 ATCCATCC
1 ATACATAC
* *
4608131 ATCCATCC
1 ATACATAC
* *
4608139 ATCCATCC
1 ATACATAC
* *
4608147 ATCCATCC
1 ATACATAC
* *
4608155 ATCCATCC
1 ATACATAC
* *
4608163 ATCCATCC
1 ATACATAC
* *
4608171 ATCCATCC
1 ATACATAC
* *
4608179 ATCCATCC
1 ATACATAC
* *
4608187 ATCCATCC
1 ATACATAC
* *
4608195 ATCCATCCCC
1 ATACAT--AC
*
4608205 ATCCAT-C
1 ATACATAC
* * *
4608212 CTCCATCC
1 ATACATAC
* *
4608220 ATCCATCC
1 ATACATAC
* *
4608228 ATCCATCC
1 ATACATAC
* *
4608236 ATCCATCC
1 ATACATAC
* *
4608244 ATCCATCC
1 ATACATAC
* *
4608252 ATCCATCC
1 ATACATAC
* *
4608260 AT-CCTCC
1 ATACATAC
* *
4608267 ATCCATCC
1 ATACATAC
* *
4608275 ATCCATCC
1 ATACATAC
* *
4608283 ATCCATCC
1 ATACATAC
* *
4608291 ATCCATCCC
1 ATACAT-AC
* *
4608300 ATCCATCC
1 ATACATAC
* *
4608308 ATCCATCC
1 ATACATAC
* *
4608316 ATCCATCC
1 ATACATAC
* *
4608324 ATCCATCC
1 ATACATAC
* *
4608332 ATCCATCC
1 ATACATAC
*
4608340 ATCCAT-C
1 ATACATAC
* * *
4608347 CTCCATCC
1 ATACATAC
* *
4608355 ATCCATCC
1 ATACATAC
* *
4608363 ATCCATCC
1 ATACATAC
* *
4608371 ATCCATCC
1 ATACATAC
* *
4608379 ATCCATCC
1 ATACATAC
* *
4608387 ATCCATCC
1 ATACATAC
* *
4608395 ATCCATCC
1 ATACATAC
* *
4608403 ATCCATCC
1 ATACATAC
*
4608411 AT-CATCC
1 ATACATAC
* *
4608418 ATCCATCC
1 ATACATAC
* *
4608426 ATCCATCC
1 ATACATAC
* *
4608434 ATCCATCC
1 ATACATAC
* *
4608442 ATCCATCC
1 ATACATAC
* *
4608450 ATCCATCC
1 ATACATAC
* *
4608458 ATCCATCC
1 ATACATAC
* *
4608466 ATCCATCC
1 ATACATAC
* *
4608474 ATCCATCC
1 ATACATAC
* *
4608482 ATCCATCC
1 ATACATAC
*
4608490 ATCCAT-C
1 ATACATAC
* * *
4608497 CTCCATCC
1 ATACATAC
* *
4608505 ATCCATCC
1 ATACATAC
* *
4608513 ATCCATCC
1 ATACATAC
* *
4608521 ATCCATCC
1 ATACATAC
* *
4608529 ATCCATCC
1 ATACATAC
* *
4608537 ATCCATCC
1 ATACATAC
* *
4608545 ATCCATCC
1 ATACATAC
* *
4608553 ATCCATCC
1 ATACATAC
* *
4608561 ATCCATCC
1 ATACATAC
* *
4608569 ATCCATCC
1 ATACATAC
* *
4608577 ATCCATCC
1 ATACATAC
* *
4608585 ATCCATCC
1 ATACATAC
* *
4608593 ATCCATCC
1 ATACATAC
* *
4608601 ATCCATCC
1 ATACATAC
* *
4608609 ATCCATCC
1 ATACATAC
* *
4608617 ATCCATCC
1 ATACATAC
* *
4608625 ATCCATCC
1 ATACATAC
* *
4608633 AT-CCTCC
1 ATACATAC
* *
4608640 ATCCATCC
1 ATACATAC
* *
4608648 ATCCATCC
1 ATACATAC
* *
4608656 ATCCATCC
1 ATACATAC
* *
4608664 ATCCATCC
1 ATACATAC
* *
4608672 ATCCATCC
1 ATACATAC
* *
4608680 ATCCATCC
1 ATACATAC
* * *
4608688 CTCCATCC
1 ATACATAC
* *
4608696 ATCCATCC
1 ATACATAC
* *
4608704 ATCCATCC
1 ATACATAC
* *
4608712 ATCCATCC
1 ATACATAC
* *
4608720 ATCCATCC
1 ATACATAC
* *
4608728 ATCCATCC
1 ATACATAC
* *
4608736 ATCCATCC
1 ATACATAC
* *
4608744 ATCCATCC
1 ATACATAC
* * *
4608752 ATCCCTCC
1 ATACATAC
* *
4608760 ATCCATCC
1 ATACATAC
* *
4608768 ATCCATCC
1 ATACATAC
* *
4608776 ATCCATCC
1 ATACATAC
* *
4608784 ATCCATCC
1 ATACATAC
* *
4608792 ATCCATCC
1 ATACATAC
* *
4608800 ATCCATCC
1 ATACATAC
* *
4608808 ATCCATCC
1 ATACATAC
* *
4608816 ATCCATCC
1 ATACATAC
* *
4608824 ATCCATCC
1 ATACATAC
* *
4608832 ATCCATCC
1 ATACATAC
* *
4608840 ATCCATCC
1 ATACATAC
* *
4608848 ATCCATCC
1 ATACATAC
* *
4608856 ATCCATCC
1 ATACATAC
* *
4608864 ATCCATCC
1 ATACATAC
* *
4608872 ATCCATCC
1 ATACATAC
* *
4608880 ATCCATCC
1 ATACATAC
* *
4608888 ATCCATCC
1 ATACATAC
* *
4608896 ATCCATCC
1 ATACATAC
* *
4608904 ATCCATCC
1 ATACATAC
* *
4608912 ATCCATCC
1 ATACATAC
* *
4608920 ATCCATCC
1 ATACATAC
* *
4608928 ATCCATCC
1 ATACATAC
* *
4608936 ATCCATCC
1 ATACATAC
* *
4608944 ATCCATCC
1 ATACATAC
* *
4608952 ATCCATCC
1 ATACATAC
* *
4608960 ATCCATCC
1 ATACATAC
* *
4608968 ATCCATCC
1 ATACATAC
* *
4608976 ATCCATCC
1 ATACATAC
* *
4608984 ATCCATCC
1 ATACATAC
* *
4608992 ATCCATCC
1 ATACATAC
* *
4609000 ATCCATCC
1 ATACATAC
* *
4609008 ATCCATCC
1 ATACATAC
* *
4609016 ATCCATCC
1 ATACATAC
* *
4609024 ATCCATCC
1 ATACATAC
* *
4609032 ATCCATCC
1 ATACATAC
* *
4609040 ATCCATCC
1 ATACATAC
* *
4609048 ATCCATCC
1 ATACATAC
* *
4609056 ATCCATCC
1 ATACATAC
* *
4609064 ATCCATCC
1 ATACATAC
* *
4609072 ATCCATCC
1 ATACATAC
* *
4609080 ATCCATCC
1 ATACATAC
* *
4609088 ATCCATCC
1 ATACATAC
* *
4609096 ATCCATCC
1 ATACATAC
* *
4609104 ATCCATCC
1 ATACATAC
* *
4609112 ATCCATCC
1 ATACATAC
* *
4609120 ATCCATCC
1 ATACATAC
* *
4609128 ATCCCATCC
1 AT-ACATAC
* *
4609137 ATCCATCC
1 ATACATAC
* *
4609145 ATCCATCC
1 ATACATAC
* *
4609153 ATCCATCC
1 ATACATAC
* *
4609161 ATCCATCC
1 ATACATAC
* *
4609169 ATCCATCC
1 ATACATAC
* *
4609177 ATCCATCC
1 ATACATAC
*
4609185 ATCCCATATCC
1 AT-ACATA--C
* *
4609196 ATCCATCC
1 ATACATAC
* *
4609204 ATCCATCC
1 ATACATAC
* *
4609212 ATCCATCC
1 ATACATAC
* *
4609220 ATCCATCC
1 ATACATAC
* *
4609228 ATCCATCC
1 ATACATAC
*
4609236 AT-C-TCC
1 ATACATAC
* *
4609242 ATCCATCC
1 ATACATAC
* *
4609250 ATCCATCC
1 ATACATAC
* *
4609258 ATCCATCC
1 ATACATAC
* *
4609266 ATCCATCC
1 ATACATAC
*
4609274 ATCCATACC
1 ATACATA-C
4609283 ATACATAC
1 ATACATAC
4609291 ATACATAC
1 ATACATAC
4609299 ATACATAC
1 ATACATAC
4609307 ATACATAC
1 ATACATAC
4609315 ATACATAC
1 ATACATAC
4609323 ATACATAC
1 ATACATAC
4609331 ATACATAC
1 ATACATAC
4609339 ATACATAC
1 ATACATAC
4609347 ATACATAC
1 ATACATAC
4609355 ATACATAC
1 ATACATAC
4609363 ATACATAC
1 ATACATAC
4609371 ATACATAC
1 ATACATAC
4609379 ATACATAC
1 ATACATAC
4609387 ATACATAC
1 ATACATAC
4609395 ATACATAC
1 ATACATAC
4609403 ATACATAC
1 ATACATAC
4609411 ATACATAC
1 ATACATAC
4609419 ATACATAC
1 ATACATAC
4609427 ATACATAC
1 ATACATAC
4609435 -TACATAC
1 ATACATAC
4609442 ATACATAC
1 ATACATAC
4609450 ATACATAC
1 ATACATAC
4609458 ATACATAC
1 ATACATAC
4609466 ATACATAC
1 ATACATAC
4609474 ATACATAC
1 ATACATAC
4609482 ATACATAC
1 ATACATAC
4609490 ATACATAC
1 ATACATAC
4609498 ATACATAC
1 ATACATAC
4609506 ATACATAC
1 ATACATAC
4609514 ATACATAC
1 ATACATAC
4609522 ATACATAC
1 ATACATAC
4609530 ATACATAC
1 ATACATAC
4609538 ATACATAC
1 ATACATAC
4609546 ATACATAC
1 ATACATAC
4609554 ATACATAC
1 ATACATAC
4609562 ATACATAC
1 ATACATAC
4609570 ATACATAC
1 ATACATAC
4609578 ATA
1 ATA
4609581 TTGTCAAGAT
Statistics
Matches: 2162, Mismatches: 38, Indels: 62
0.96 0.02 0.03
Matches are distributed among these distances:
6 27 0.01
7 80 0.04
8 1998 0.92
9 42 0.02
10 12 0.01
11 3 0.00
ACGTcount: A:0.36, C:0.39, G:0.00, T:0.25
Consensus pattern (8 bp):
ATACATAC
Found at i:4608017 original size:12 final size:12
Alignment explanation
Indices: 4607342--4609580 Score: 1527
Period size: 12 Copynumber: 187.6 Consensus size: 12
4607332 AAGTTGCTAT
4607342 ATACATACATAC
1 ATACATACATAC
4607354 ATACATACATAC
1 ATACATACATAC
4607366 ATACATACATAC
1 ATACATACATAC
4607378 ATACATACATAC
1 ATACATACATAC
4607390 ATACATACATAC
1 ATACATACATAC
4607402 ATACATACATAC
1 ATACATACATAC
4607414 ATACATACATAC
1 ATACATACATAC
4607426 ATACATACATAC
1 ATACATACATAC
4607438 ATACATACATAC
1 ATACATACATAC
4607450 ATACATACATAC
1 ATACATACATAC
4607462 ATACATACATAC
1 ATACATACATAC
4607474 ATACATACATAC
1 ATACATACATAC
4607486 ATACATACATAC
1 ATACATACATAC
4607498 ATACATACATAC
1 ATACATACATAC
4607510 ATACATACATAC
1 ATACATACATAC
4607522 ATACATACATAC
1 ATACATACATAC
4607534 ATAC--ACATAC
1 ATACATACATAC
4607544 A-ACATACATAC
1 ATACATACATAC
4607555 ATACATACATAC
1 ATACATACATAC
4607567 ATACATACATAC
1 ATACATACATAC
4607579 ATACATACATAC
1 ATACATACATAC
4607591 ATACATACATAC
1 ATACATACATAC
4607603 ATACATACATAC
1 ATACATACATAC
4607615 ATACATACATAC
1 ATACATACATAC
4607627 ATACATACATAC
1 ATACATACATAC
4607639 ATACATACATAC
1 ATACATACATAC
4607651 ATACATACATAC
1 ATACATACATAC
*
4607663 ATACAACACATAC
1 ATAC-ATACATAC
4607676 ATACATACATAC
1 ATACATACATAC
4607688 ATACATACATAC
1 ATACATACATAC
4607700 ATACATAC-TAC
1 ATACATACATAC
4607711 ATACATACATAC
1 ATACATACATAC
4607723 ATACATACATAC
1 ATACATACATAC
4607735 ATACATACATAC
1 ATACATACATAC
4607747 ATACATACATAC
1 ATACATACATAC
4607759 ATACATACATAC
1 ATACATACATAC
4607771 --ACATACATAC
1 ATACATACATAC
4607781 ATACATACATAC
1 ATACATACATAC
4607793 ATACATACATAC
1 ATACATACATAC
4607805 ATACATACATAC
1 ATACATACATAC
4607817 ATACATACATAC
1 ATACATACATAC
4607829 ATACATACATAC
1 ATACATACATAC
4607841 ATACATACATAC
1 ATACATACATAC
4607853 ATACATACATAC
1 ATACATACATAC
4607865 ATACATACATAC
1 ATACATACATAC
4607877 ATACATACATAC
1 ATACATACATAC
4607889 ATACATACATAC
1 ATACATACATAC
4607901 ATACATACATAC
1 ATACATACATAC
4607913 ATACATACATAC
1 ATACATACATAC
4607925 ATACATACATAC
1 ATACATACATAC
4607937 ATACATACATAC
1 ATACATACATAC
4607949 ATACATACATAC
1 ATACATACATAC
4607961 ATACATACATAC
1 ATACATACATAC
4607973 ATACATACATAC
1 ATACATACATAC
4607985 ATACATACATAC
1 ATACATACATAC
4607997 ATACATACATAC
1 ATACATACATAC
*
4608009 ATACCTACATAC
1 ATACATACATAC
*
4608021 AATACATAC-CAC
1 -ATACATACATAC
4608033 ATAC--ACATAC
1 ATACATACATAC
* **
4608043 -CACCCACATAC
1 ATACATACATAC
4608054 ATACATACATAC
1 ATACATACATAC
*
4608066 ATACCTACATAC
1 ATACATACATAC
4608078 ATACATACAT-C
1 ATACATACATAC
* *
4608089 ATCCATACACAC
1 ATACATACATAC
*
4608101 A-CCATACCATAC
1 ATACATA-CATAC
*
4608113 --ACATCCATAC
1 ATACATACATAC
* * *
4608123 ATCCATCCATCC
1 ATACATACATAC
* * *
4608135 ATCCATCCATCC
1 ATACATACATAC
* * *
4608147 ATCCATCCATCC
1 ATACATACATAC
* * *
4608159 ATCCATCCATCC
1 ATACATACATAC
* * *
4608171 ATCCATCCATCC
1 ATACATACATAC
* * *
4608183 ATCCATCCATCC
1 ATACATACATAC
* * *
4608195 ATCCATCCCCATCC
1 ATACAT--ACATAC
* * *
4608209 AT-CCTCCATCC
1 ATACATACATAC
* * *
4608220 ATCCATCCATCC
1 ATACATACATAC
* * *
4608232 ATCCATCCATCC
1 ATACATACATAC
* * *
4608244 ATCCATCCATCC
1 ATACATACATAC
* * *
4608256 ATCCAT-CCTCC
1 ATACATACATAC
* * *
4608267 ATCCATCCATCC
1 ATACATACATAC
* * *
4608279 ATCCATCCATCC
1 ATACATACATAC
* * *
4608291 ATCCATCCCATCC
1 ATACAT-ACATAC
* * *
4608304 ATCCATCCATCC
1 ATACATACATAC
* * *
4608316 ATCCATCCATCC
1 ATACATACATAC
* * *
4608328 ATCCATCCATCC
1 ATACATACATAC
* * *
4608340 ATCCAT-CCTCC
1 ATACATACATAC
* * *
4608351 ATCCATCCATCC
1 ATACATACATAC
* * *
4608363 ATCCATCCATCC
1 ATACATACATAC
* * *
4608375 ATCCATCCATCC
1 ATACATACATAC
* * *
4608387 ATCCATCCATCC
1 ATACATACATAC
* * *
4608399 ATCCATCCATCC
1 ATACATACATAC
* *
4608411 AT-CATCCATCC
1 ATACATACATAC
* * *
4608422 ATCCATCCATCC
1 ATACATACATAC
* * *
4608434 ATCCATCCATCC
1 ATACATACATAC
* * *
4608446 ATCCATCCATCC
1 ATACATACATAC
* * *
4608458 ATCCATCCATCC
1 ATACATACATAC
* * *
4608470 ATCCATCCATCC
1 ATACATACATAC
* * *
4608482 ATCCATCCATCC
1 ATACATACATAC
* * *
4608494 AT-CCTCCATCC
1 ATACATACATAC
* * *
4608505 ATCCATCCATCC
1 ATACATACATAC
* * *
4608517 ATCCATCCATCC
1 ATACATACATAC
* * *
4608529 ATCCATCCATCC
1 ATACATACATAC
* * *
4608541 ATCCATCCATCC
1 ATACATACATAC
* * *
4608553 ATCCATCCATCC
1 ATACATACATAC
* * *
4608565 ATCCATCCATCC
1 ATACATACATAC
* * *
4608577 ATCCATCCATCC
1 ATACATACATAC
* * *
4608589 ATCCATCCATCC
1 ATACATACATAC
* * *
4608601 ATCCATCCATCC
1 ATACATACATAC
* * *
4608613 ATCCATCCATCC
1 ATACATACATAC
* *
4608625 ATCCATCCAT-C
1 ATACATACATAC
* * * *
4608636 CTCCATCCATCC
1 ATACATACATAC
* * *
4608648 ATCCATCCATCC
1 ATACATACATAC
* * *
4608660 ATCCATCCATCC
1 ATACATACATAC
* * *
4608672 ATCCATCCATCC
1 ATACATACATAC
* * * *
4608684 ATCCCTCCATCC
1 ATACATACATAC
* * *
4608696 ATCCATCCATCC
1 ATACATACATAC
* * *
4608708 ATCCATCCATCC
1 ATACATACATAC
* * *
4608720 ATCCATCCATCC
1 ATACATACATAC
* * *
4608732 ATCCATCCATCC
1 ATACATACATAC
* * *
4608744 ATCCATCCATCC
1 ATACATACATAC
* * * *
4608756 CTCCATCCATCC
1 ATACATACATAC
* * *
4608768 ATCCATCCATCC
1 ATACATACATAC
* * *
4608780 ATCCATCCATCC
1 ATACATACATAC
* * *
4608792 ATCCATCCATCC
1 ATACATACATAC
* * *
4608804 ATCCATCCATCC
1 ATACATACATAC
* * *
4608816 ATCCATCCATCC
1 ATACATACATAC
* * *
4608828 ATCCATCCATCC
1 ATACATACATAC
* * *
4608840 ATCCATCCATCC
1 ATACATACATAC
* * *
4608852 ATCCATCCATCC
1 ATACATACATAC
* * *
4608864 ATCCATCCATCC
1 ATACATACATAC
* * *
4608876 ATCCATCCATCC
1 ATACATACATAC
* * *
4608888 ATCCATCCATCC
1 ATACATACATAC
* * *
4608900 ATCCATCCATCC
1 ATACATACATAC
* * *
4608912 ATCCATCCATCC
1 ATACATACATAC
* * *
4608924 ATCCATCCATCC
1 ATACATACATAC
* * *
4608936 ATCCATCCATCC
1 ATACATACATAC
* * *
4608948 ATCCATCCATCC
1 ATACATACATAC
* * *
4608960 ATCCATCCATCC
1 ATACATACATAC
* * *
4608972 ATCCATCCATCC
1 ATACATACATAC
* * *
4608984 ATCCATCCATCC
1 ATACATACATAC
* * *
4608996 ATCCATCCATCC
1 ATACATACATAC
* * *
4609008 ATCCATCCATCC
1 ATACATACATAC
* * *
4609020 ATCCATCCATCC
1 ATACATACATAC
* * *
4609032 ATCCATCCATCC
1 ATACATACATAC
* * *
4609044 ATCCATCCATCC
1 ATACATACATAC
* * *
4609056 ATCCATCCATCC
1 ATACATACATAC
* * *
4609068 ATCCATCCATCC
1 ATACATACATAC
* * *
4609080 ATCCATCCATCC
1 ATACATACATAC
* * *
4609092 ATCCATCCATCC
1 ATACATACATAC
* * *
4609104 ATCCATCCATCC
1 ATACATACATAC
* * *
4609116 ATCCATCCATCC
1 ATACATACATAC
* * *
4609128 ATCCCATCCATCC
1 AT-ACATACATAC
* * *
4609141 ATCCATCCATCC
1 ATACATACATAC
* * *
4609153 ATCCATCCATCC
1 ATACATACATAC
* * *
4609165 ATCCATCCATCC
1 ATACATACATAC
* * *
4609177 ATCCATCCATCCC
1 ATACATACAT-AC
* *
4609190 ATATCCATCCATCC
1 ATA--CATACATAC
* * *
4609204 ATCCATCCATCC
1 ATACATACATAC
* * *
4609216 ATCCATCCATCC
1 ATACATACATAC
* *
4609228 ATCCATCCAT-C
1 ATACATACATAC
* * *
4609239 -TCCATCCATCC
1 ATACATACATAC
* * *
4609250 ATCCATCCATCC
1 ATACATACATAC
* * *
4609262 ATCCATCCATCC
1 ATACATACATAC
*
4609274 ATCCATACCATAC
1 ATACATA-CATAC
4609287 ATACATACATAC
1 ATACATACATAC
4609299 ATACATACATAC
1 ATACATACATAC
4609311 ATACATACATAC
1 ATACATACATAC
4609323 ATACATACATAC
1 ATACATACATAC
4609335 ATACATACATAC
1 ATACATACATAC
4609347 ATACATACATAC
1 ATACATACATAC
4609359 ATACATACATAC
1 ATACATACATAC
4609371 ATACATACATAC
1 ATACATACATAC
4609383 ATACATACATAC
1 ATACATACATAC
4609395 ATACATACATAC
1 ATACATACATAC
4609407 ATACATACATAC
1 ATACATACATAC
4609419 ATACATACATAC
1 ATACATACATAC
4609431 ATAC-TACATAC
1 ATACATACATAC
4609442 ATACATACATAC
1 ATACATACATAC
4609454 ATACATACATAC
1 ATACATACATAC
4609466 ATACATACATAC
1 ATACATACATAC
4609478 ATACATACATAC
1 ATACATACATAC
4609490 ATACATACATAC
1 ATACATACATAC
4609502 ATACATACATAC
1 ATACATACATAC
4609514 ATACATACATAC
1 ATACATACATAC
4609526 ATACATACATAC
1 ATACATACATAC
4609538 ATACATACATAC
1 ATACATACATAC
4609550 ATACATACATAC
1 ATACATACATAC
4609562 ATACATACATAC
1 ATACATACATAC
4609574 ATACATA
1 ATACATA
4609581 TTGTCAAGAT
Statistics
Matches: 2156, Mismatches: 38, Indels: 66
0.95 0.02 0.03
Matches are distributed among these distances:
9 6 0.00
10 33 0.02
11 117 0.05
12 1923 0.89
13 58 0.03
14 12 0.01
15 7 0.00
ACGTcount: A:0.36, C:0.39, G:0.00, T:0.25
Consensus pattern (12 bp):
ATACATACATAC
Found at i:4608055 original size:4 final size:4
Alignment explanation
Indices: 4608048--4608097 Score: 75
Period size: 4 Copynumber: 12.8 Consensus size: 4
4608038 CATACCACCC
* *
4608048 ACAT ACAT ACAT ACAT ACAT ACCT ACAT ACAT ACAT ACAT -CAT CCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
4608095 ACA
1 ACA
4608098 CACACCATAC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
3 3 0.07
4 39 0.93
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:4608131 original size:4 final size:4
Alignment explanation
Indices: 4608114--4609284 Score: 2195
Period size: 4 Copynumber: 294.8 Consensus size: 4
4608104 ATACCATACA
*
4608114 CATC CATA CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608162 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC C--C CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608208 CATC C-TC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608255 CATC CATC C-TC CATC CATC CATC CATC CATC CATC CATC CATCC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CAT-C CATC
4608303 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC C-TC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608350 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608398 CATC CATC CATC CAT- CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608445 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608493 CATC C-TC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608540 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608588 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608636 C-TC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
*
4608683 CATC CCTC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
*
4608731 CATC CATC CATC CATC CATC CATC CCTC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608779 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608827 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608875 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608923 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4608971 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4609019 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4609067 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4609115 CATC CATC CATC CATCC CATC CATC CATC CATC CATC CATC CATC CATC
1 CATC CATC CATC CAT-C CATC CATC CATC CATC CATC CATC CATC CATC
4609164 CATC CATC CATC CATC CATC CATCC CAT- -ATC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CAT-C CATC CATC CATC CATC CATC CATC
4609211 CATC CATC CATC CATC CATC CATC CAT- C-TC CATC CATC CATC CATC
1 CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC CATC
4609257 CATC CATC CATC CATC CATC CATAC CAT
1 CATC CATC CATC CATC CATC CAT-C CAT
4609285 ACATACATAC
Statistics
Matches: 1145, Mismatches: 6, Indels: 31
0.97 0.01 0.03
Matches are distributed among these distances:
2 5 0.00
3 20 0.02
4 1104 0.96
5 16 0.01
ACGTcount: A:0.25, C:0.50, G:0.00, T:0.25
Consensus pattern (4 bp):
CATC
Found at i:4609289 original size:4 final size:4
Alignment explanation
Indices: 4609277--4609580 Score: 592
Period size: 4 Copynumber: 76.0 Consensus size: 4
4609267 TCCATCCATC
4609277 CATA CCATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA -CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
4609326 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
4609374 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
4609422 CATA CATA CATA C-TA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
4609469 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
4609517 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
4609565 CATA CATA CATA CATA
1 CATA CATA CATA CATA
4609581 TTGTCAAGAT
Statistics
Matches: 298, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
3 3 0.01
4 291 0.98
5 4 0.01
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:4611398 original size:42 final size:42
Alignment explanation
Indices: 4611351--4611551 Score: 160
Period size: 42 Copynumber: 4.8 Consensus size: 42
4611341 ACCGACCTTG
** * *
4611351 GCTCATCCATTGCATATGGATTTGGATCAACATCACCATTTT
1 GCTCATCCATCACATATGGATTTGGATCAACATCATCATTTC
* * *
4611393 GCTCATTCATCACATAAT-GAGTTGGATCAACATCATAATTTC
1 GCTCATCCATCACAT-ATGGATTTGGATCAACATCATCATTTC
* * *
4611435 GCTCGTCCATCACATAAGAAGTTT-GATCAACATCATCATTTC
1 GCTCATCCATCACATATGGA-TTTGGATCAACATCATCATTTC
* * * * *
4611477 GCTCGTCCATCACATAAGG-TGTTGGATCAGCATTATC--TTG
1 GCTCATCCATCACATATGGAT-TTGGATCAACATCATCATTTC
** * * *
4611517 GCTTGTCCATCACATAAGGAGTTGGATCAGCATCA
1 GCTCATCCATCACATATGGATTTGGATCAACATCA
4611552 ACTTAGGTTA
Statistics
Matches: 133, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
40 34 0.26
41 3 0.02
42 92 0.69
43 4 0.03
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
GCTCATCCATCACATATGGATTTGGATCAACATCATCATTTC
Found at i:4611475 original size:84 final size:82
Alignment explanation
Indices: 4611372--4611551 Score: 218
Period size: 84 Copynumber: 2.2 Consensus size: 82
4611362 GCATATGGAT
* * *
4611372 TTGGATCAACATCACCATTTTGCTCATTCATCACATAATGAGTTGGATCAACATCATAAT-TTCG
1 TTGGATCAACATCACCATTTCGCTCATCCATCACATAAGGAGTTGGATCAACAT--T-ATCTTCG
4611436 CTCGTCCATCACATAAGAAG
63 CTCGTCCATCACATAAGAAG
* * * * * * *
4611456 TTTGATCAACATCATCATTTCGCTCGTCCATCACATAAGGTGTTGGATCAGCATTATCTTGGCTT
1 TTGGATCAACATCACCATTTCGCTCATCCATCACATAAGGAGTTGGATCAACATTATCTTCGCTC
*
4611521 GTCCATCACATAAGGAG
66 GTCCATCACATAAGAAG
*
4611538 TTGGATCAGCATCA
1 TTGGATCAACATCA
4611552 ACTTAGGTTA
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
81 2 0.02
82 34 0.41
84 46 0.56
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (82 bp):
TTGGATCAACATCACCATTTCGCTCATCCATCACATAAGGAGTTGGATCAACATTATCTTCGCTC
GTCCATCACATAAGAAG
Found at i:4611549 original size:40 final size:40
Alignment explanation
Indices: 4611400--4611545 Score: 168
Period size: 42 Copynumber: 3.5 Consensus size: 40
4611390 TTTGCTCATT
*
4611400 CATCACATAATGAGTTGGATCAACATCATAAT-TTCGCTCGTC
1 CATCACATAAGGAGTTGGATCAACAT--T-ATCTTCGCTCGTC
* * *
4611442 CATCACATAAGAAGTTTGATCAACATCATCATTTCGCTCGTC
1 CATCACATAAGGAGTTGGATCAACATTATC--TTCGCTCGTC
* * * *
4611484 CATCACATAAGGTGTTGGATCAGCATTATCTTGGCTTGTC
1 CATCACATAAGGAGTTGGATCAACATTATCTTCGCTCGTC
4611524 CATCACATAAGGAGTTGGATCA
1 CATCACATAAGGAGTTGGATCA
4611546 GCATCAACTT
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 29 0.33
42 58 0.65
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (40 bp):
CATCACATAAGGAGTTGGATCAACATTATCTTCGCTCGTC
Found at i:4611567 original size:40 final size:40
Alignment explanation
Indices: 4611483--4611580 Score: 110
Period size: 40 Copynumber: 2.5 Consensus size: 40
4611473 TTTCGCTCGT
* * * **
4611483 CCATCACATAAGGTGTTGGATCAGCATTATCTTGGCTTGT
1 CCATCACATAAGGAGTTGGATCAGCATCAACTTGGCTTAA
4611523 CCATCACATAAGGAGTTGGATCAGCATCAACTTAGG-TTAA
1 CCATCACATAAGGAGTTGGATCAGCATCAACTT-GGCTTAA
**
4611563 CCATCGTA-AAGGAGTTGG
1 CCATCACATAAGGAGTTGG
4611581 GTCAACATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
39 10 0.20
40 38 0.76
41 2 0.04
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (40 bp):
CCATCACATAAGGAGTTGGATCAGCATCAACTTGGCTTAA
Found at i:4611855 original size:12 final size:13
Alignment explanation
Indices: 4611838--4611874 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
4611828 TATCCCAAAA
4611838 ATAAATAAT-AAT
1 ATAAATAATAAAT
4611850 ATAAAT-ATAAAT
1 ATAAATAATAAAT
*
4611862 ATAAATAAAAAAT
1 ATAAATAATAAAT
4611875 CATCAAATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
ATAAATAATAAAT
Found at i:4616874 original size:20 final size:21
Alignment explanation
Indices: 4616849--4616900 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
4616839 TTTTCCCAAT
*
4616849 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
4616869 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
4616890 TCGCAATGCGA
1 TCGCAATGCGA
4616901 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:4616917 original size:20 final size:20
Alignment explanation
Indices: 4616889--4616982 Score: 82
Period size: 20 Copynumber: 4.7 Consensus size: 20
4616879 AATTGGGAAA
4616889 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
4616909 ATTGCAATGCGATAGTTACT
1 ATCGCAATGCGATACTGACT
* *
4616929 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
4616950 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* *
4616970 TTCGCAACGCGAT
1 ATCGCAATGCGAT
4616983 TTACATAGCG
Statistics
Matches: 59, Mismatches: 12, Indels: 6
0.77 0.16 0.08
Matches are distributed among these distances:
19 2 0.03
20 42 0.71
21 13 0.22
22 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:4617581 original size:19 final size:19
Alignment explanation
Indices: 4617537--4617581 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
4617527 GCAACGAGAG
*
4617537 AATCGCAACACGAAATAAA
1 AATCGCAACACGAAACAAA
* *
4617556 AAACGCAACGCGAAACAAA
1 AATCGCAACACGAAACAAA
*
4617575 ATTCGCA
1 AATCGCA
4617582 TTGCGATTTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.53, C:0.24, G:0.13, T:0.09
Consensus pattern (19 bp):
AATCGCAACACGAAACAAA
Found at i:4617623 original size:20 final size:19
Alignment explanation
Indices: 4617576--4617647 Score: 108
Period size: 19 Copynumber: 3.7 Consensus size: 19
4617566 CGAAACAAAA
*
4617576 TTCGCATTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
4617595 TTCGCGTTGCGATTTTTAT
1 TTCGCGTTGCGATTTTCAT
4617614 TTCGCGGTTGCGATTTTCAT
1 TTCGC-GTTGCGATTTTCAT
*
4617634 TTTGCGTTGCGATT
1 TTCGCGTTGCGATT
4617648 GTCTAGTCGC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
19 31 0.65
20 17 0.35
ACGTcount: A:0.11, C:0.18, G:0.22, T:0.49
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:4617658 original size:39 final size:39
Alignment explanation
Indices: 4617582--4617658 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
4617572 AAAATTCGCA
* *
4617582 TTGCGATTTTCATTTCGCGTTGCGATTTTTATTTCGCGG
1 TTGCGATTTTCATTTCGCGTTGCGATTTCTATGTCGCGG
*
4617621 TTGCGATTTTCATTTTGCGTTGCGATTGTCTA-GTCGCG
1 TTGCGATTTTCATTTCGCGTTGCGATT-TCTATGTCGCG
4617659 ATAGTCATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 31 0.91
40 3 0.09
ACGTcount: A:0.10, C:0.18, G:0.25, T:0.47
Consensus pattern (39 bp):
TTGCGATTTTCATTTCGCGTTGCGATTTCTATGTCGCGG
Found at i:4617660 original size:33 final size:33
Alignment explanation
Indices: 4617623--4617694 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
4617613 TTTCGCGGTT
* * *
4617623 GCGATTTTCATTTTGCGTTGCGATTGTCTAGTC
1 GCGATTGTCATTTCGCGTTGCGATTCTCTAGTC
* * *
4617656 GCGATAGTCATTTCGCGTTGCGATTCTCTCGTT
1 GCGATTGTCATTTCGCGTTGCGATTCTCTAGTC
4617689 GCGATT
1 GCGATT
4617695 CTCTCGTTGC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.12, C:0.21, G:0.25, T:0.42
Consensus pattern (33 bp):
GCGATTGTCATTTCGCGTTGCGATTCTCTAGTC
Found at i:4617688 original size:14 final size:14
Alignment explanation
Indices: 4617671--4617707 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
4617661 AGTCATTTCG
4617671 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
4617685 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
4617699 CGTTGCGAT
1 CGTTGCGAT
4617708 AGTCATTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.08, C:0.27, G:0.24, T:0.41
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:4617707 original size:47 final size:48
Alignment explanation
Indices: 4617638--4617731 Score: 154
Period size: 47 Copynumber: 2.0 Consensus size: 48
4617628 TTTCATTTTG
*
4617638 CGTTGCGATTGTCTAGTCGCGATAGTCATTT-CGCGTTGCGATTCTCT
1 CGTTGCGATTCTCTAGTCGCGATAGTCATTTCCGCGTTGCGATTCTCT
* *
4617685 CGTTGCGATTCTCTCGTTGCGATAGTCATTTCCGCGTTGCGATTCTC
1 CGTTGCGATTCTCTAGTCGCGATAGTCATTTCCGCGTTGCGATTCTC
4617732 ATTATCTCGT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
47 28 0.65
48 15 0.35
ACGTcount: A:0.12, C:0.26, G:0.24, T:0.38
Consensus pattern (48 bp):
CGTTGCGATTCTCTAGTCGCGATAGTCATTTCCGCGTTGCGATTCTCT
Found at i:4617733 original size:20 final size:20
Alignment explanation
Indices: 4617699--4617756 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
4617689 GCGATTCTCT
**
4617699 CGTTGCGATAGTCATTTCCG
1 CGTTGCGATTCTCATTTCCG
*
4617719 CGTTGCGATTCTCATTAT-CT
1 CGTTGCGATTCTCATT-TCCG
*
4617739 CGTTGCGATTTTCATTTC
1 CGTTGCGATTCTCATTTC
4617757 AACCAAAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTCTCATTTCCG
Found at i:4617880 original size:25 final size:26
Alignment explanation
Indices: 4617826--4617880 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
4617816 TTTATTGTTT
*
4617826 TGTTTTTGGTATATCTTGACAGTGTA
1 TGTTTTTGGTATATCTTAACAGTGTA
**
4617852 -GTTTTTGGTATATC-TAACTTTGTA
1 TGTTTTTGGTATATCTTAACAGTGTA
4617876 TGTTT
1 TGTTT
4617881 ATTGTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.18, C:0.07, G:0.20, T:0.55
Consensus pattern (26 bp):
TGTTTTTGGTATATCTTAACAGTGTA
Found at i:4621259 original size:14 final size:14
Alignment explanation
Indices: 4621240--4621275 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
4621230 ATTGTTTAAT
4621240 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
4621254 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
4621268 TGATTTGT
1 TGATTTGT
4621276 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:4623802 original size:12 final size:12
Alignment explanation
Indices: 4623785--4623809 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4623775 TCTTCGAGGA
4623785 CTTTTTCTTCTT
1 CTTTTTCTTCTT
4623797 CTTTTTCTTCTT
1 CTTTTTCTTCTT
4623809 C
1 C
4623810 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:4625119 original size:20 final size:20
Alignment explanation
Indices: 4625094--4625131 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
4625084 ATTCATTTGA
*
4625094 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGAGAAAATGG
4625114 CTATCGCAACGAGAAAAT
1 CTATCGCAACGAGAAAAT
4625132 CGCAATGCGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.24, G:0.21, T:0.16
Consensus pattern (20 bp):
CTATCGCAACGAGAAAATGG
Found at i:4625195 original size:19 final size:19
Alignment explanation
Indices: 4625150--4625236 Score: 130
Period size: 19 Copynumber: 4.8 Consensus size: 19
4625140 GAAATGAAAA
4625150 TCGCATTGCGATTTTC---
1 TCGCATTGCGATTTTCATT
*
4625166 TCG--TTGTGATTTTCATT
1 TCGCATTGCGATTTTCATT
4625183 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
4625202 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
4625221 TCGCATTGCGATTTTC
1 TCGCATTGCGATTTTC
4625237 TCGTTGCGAT
Statistics
Matches: 64, Mismatches: 2, Indels: 7
0.88 0.03 0.10
Matches are distributed among these distances:
14 10 0.16
16 3 0.05
17 3 0.05
19 48 0.75
ACGTcount: A:0.14, C:0.21, G:0.17, T:0.48
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:4625224 original size:38 final size:33
Alignment explanation
Indices: 4625150--4625265 Score: 142
Period size: 33 Copynumber: 3.4 Consensus size: 33
4625140 GAAATGAAAA
*
4625150 TCGCATTGCGATTTTCTCGTTGTGATTTTCATT
1 TCGCATTGCGATTTTCTCGTTGCGATTTTCATT
4625183 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTC---TCG--TTGCGATTTTCATT
***
4625221 TCGCATTGCGATTTTCTCGTTGCGATAGCCATT
1 TCGCATTGCGATTTTCTCGTTGCGATTTTCATT
*
4625254 TCGCGTTGCGAT
1 TCGCATTGCGAT
4625266 AGTCTGTTTT
Statistics
Matches: 73, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
33 38 0.52
35 3 0.04
36 3 0.04
38 29 0.40
ACGTcount: A:0.14, C:0.22, G:0.20, T:0.45
Consensus pattern (33 bp):
TCGCATTGCGATTTTCTCGTTGCGATTTTCATT
Found at i:4625369 original size:14 final size:14
Alignment explanation
Indices: 4625352--4625388 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
4625342 CATCAATTAA
4625352 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
4625366 ACAAATCATCTTTT
1 ACAAATCAACATTT
4625380 ACAAATCAA
1 ACAAATCAA
4625389 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:4627280 original size:20 final size:19
Alignment explanation
Indices: 4627257--4627324 Score: 82
Period size: 20 Copynumber: 3.5 Consensus size: 19
4627247 GAAACTTAAA
4627257 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCG-AAATGACT
*
4627277 ATCGCAACGCGGAAATGGCT
1 ATCGCAACGC-GAAATGACT
* **
4627297 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
4627316 ATCGCAACG
1 ATCGCAACG
4627325 ACAAAATCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
19 14 0.34
20 26 0.63
21 1 0.02
ACGTcount: A:0.38, C:0.24, G:0.24, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:4627332 original size:14 final size:14
Alignment explanation
Indices: 4627313--4627369 Score: 69
Period size: 14 Copynumber: 3.8 Consensus size: 14
4627303 ATGCGAAATG
4627313 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
4627327 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
4627343 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
4627359 AAAATCGCAAC
1 AAAATCGCAAC
4627370 ACGAAACACA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 20 0.54
16 8 0.22
18 9 0.24
ACGTcount: A:0.49, C:0.26, G:0.16, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:4627355 original size:32 final size:33
Alignment explanation
Indices: 4627297--4627375 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
4627287 GGAAATGGCT
*
4627297 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
4627330 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACGACAAA
*
4627362 ATCGCAACACGAAA
1 ATCGCAACGCGAAA
4627376 CACAAATCGC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 29 0.66
33 15 0.34
ACGTcount: A:0.48, C:0.24, G:0.18, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGACAAA
Found at i:4627423 original size:14 final size:14
Alignment explanation
Indices: 4627404--4627461 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
4627394 TTTCATTTCG
*
4627404 CGTTGCGATTTTGT
1 CGTTGCGATTTTAT
*
4627418 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TAT
4627434 CGCATTGCGATTTTAT
1 CG--TTGCGATTTTAT
4627450 CGTTGCGATTTT
1 CGTTGCGATTTT
4627462 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.12, C:0.17, G:0.22, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTAT
Found at i:4627468 original size:33 final size:33
Alignment explanation
Indices: 4627387--4627477 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
4627377 ACAAATCGCA
* *
4627387 TTGCGATTTTCATTTCGCGTTGCGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTATCG
4627420 TTGCGA-TTTCATTTCGCATTGCGATTTTATCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTATCG
4627452 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
4627478 AGCCATTTCC
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 30 0.55
33 25 0.45
ACGTcount: A:0.13, C:0.19, G:0.21, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTATCG
Found at i:4627496 original size:20 final size:19
Alignment explanation
Indices: 4627462--4627516 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
4627452 TTGCGATTTT
*
4627462 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
4627481 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
4627501 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
4627517 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:4628024 original size:18 final size:18
Alignment explanation
Indices: 4627998--4628042 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
4627988 GTCGATCAGA
*
4627998 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
4628016 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
4628034 TGATGGCTC
1 TGATGGCTC
4628043 CCGAAGTGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:4629385 original size:20 final size:20
Alignment explanation
Indices: 4629360--4629397 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
4629350 AATAGTTTCT
4629360 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
4629380 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
4629398 GAGAGAATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:4629688 original size:22 final size:22
Alignment explanation
Indices: 4629661--4629704 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
4629651 GATGGAGATA
4629661 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
4629683 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
4629705 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:4629918 original size:20 final size:20
Alignment explanation
Indices: 4629892--4629964 Score: 119
Period size: 20 Copynumber: 3.6 Consensus size: 20
4629882 GATTATATAT
4629892 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
4629912 AATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGAAAGTCAG
*
4629932 TATCGCGTTGCGAAAGTAAG
1 TATCGCGTTGCGAAAGTCAG
*
4629952 TATCTCGTTGCGA
1 TATCGCGTTGCGA
4629965 TTTTGTATTA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (20 bp):
TATCGCGTTGCGAAAGTCAG
Found at i:4630008 original size:41 final size:41
Alignment explanation
Indices: 4629872--4630009 Score: 118
Period size: 41 Copynumber: 3.4 Consensus size: 41
4629862 CGCTTTGAAA
* * * * *
4629872 ATCGCATTGCGATTATATATTATCGCGTTGCGAAAGTCAGA
1 ATCGCATTGCGATTTTGTATTATCGCATTGCGAAAGTAAGT
* ** * *
4629913 ATCGCGTTGCGA--AAGTCAGTATCGCGTTGCGAAAGTAAGT
1 ATCGCATTGCGATTTTGT-ATTATCGCATTGCGAAAGTAAGT
* * * *
4629953 ATCTCGTTGCGATTTTGTATTATCGCATTGCGATAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCATTGCGAAAGTAAGT
*
4629994 ATCGCATTGTGATTTT
1 ATCGCATTGCGATTTT
4630010 CCCAATTCGC
Statistics
Matches: 78, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
39 2 0.03
40 31 0.40
41 43 0.55
42 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.35
Consensus pattern (41 bp):
ATCGCATTGCGATTTTGTATTATCGCATTGCGAAAGTAAGT
Found at i:4630025 original size:41 final size:41
Alignment explanation
Indices: 4629998--4630087 Score: 126
Period size: 41 Copynumber: 2.2 Consensus size: 41
4629988 GTCAGTATCG
* * *
4629998 CATTGTGATTTTCCCAATTCGCGTTGCGATTTACTTATTCA
1 CATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTATTCA
* * *
4630039 CATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTATTCG
1 CATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTATTCA
4630080 CATTGCGA
1 CATTGCGA
4630088 ATTGGGAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.41
Consensus pattern (41 bp):
CATTGCGATTTTCCCAATTCGCGTTGCGATTCACGTATTCA
Found at i:4630028 original size:21 final size:21
Alignment explanation
Indices: 4629995--4630087 Score: 82
Period size: 20 Copynumber: 4.5 Consensus size: 21
4629985 ATAGTCAGTA
*
4629995 TCGCATTGTGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
4630016 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
*
4630036 TCACATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
4630057 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
4630077 TCGCATTGCGA
1 TCGCATTGCGA
4630088 ATTGGGAAAA
Statistics
Matches: 55, Mismatches: 16, Indels: 3
0.74 0.22 0.04
Matches are distributed among these distances:
20 31 0.56
21 24 0.44
ACGTcount: A:0.18, C:0.24, G:0.17, T:0.41
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:4630044 original size:20 final size:20
Alignment explanation
Indices: 4630014--4630087 Score: 85
Period size: 20 Copynumber: 3.6 Consensus size: 20
4630004 GATTTTCCCA
*
4630014 ATTCGCGTTGCGATTTACTT
1 ATTCGCATTGCGATTTACTT
* * **
4630034 ATTCACATTGCGATTTTCCCA
1 ATTCGCATTGCGA-TTTACTT
*
4630055 ATTCGCGTTGCGATTTACTT
1 ATTCGCATTGCGATTTACTT
4630075 ATTCGCATTGCGA
1 ATTCGCATTGCGA
4630088 ATTGGGAAAA
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 27 0.64
21 15 0.36
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.41
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACTT
Found at i:4630973 original size:9 final size:9
Alignment explanation
Indices: 4630959--4630994 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
4630949 AAAGATAACA
*
4630959 TTAAAAAGT
1 TTAAAAATT
4630968 TTAAAAATT
1 TTAAAAATT
*
4630977 TTAAAATTT
1 TTAAAAATT
4630986 TTAAAAATT
1 TTAAAAATT
4630995 AAGAATATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (9 bp):
TTAAAAATT
Found at i:4631356 original size:15 final size:16
Alignment explanation
Indices: 4631316--4631361 Score: 67
Period size: 15 Copynumber: 2.8 Consensus size: 16
4631306 AAAACCACAA
4631316 ATTTTAAATTAATAAAAT
1 ATTTTAAA--AATAAAAT
4631334 ATTTTAAAAATAAAAT
1 ATTTTAAAAATAAAAT
4631350 A-TTTAAAAATAA
1 ATTTTAAAAATAA
4631362 TACTTTCAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 11 0.39
16 9 0.32
18 8 0.29
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTTTAAAAATAAAAT
Found at i:4631873 original size:15 final size:15
Alignment explanation
Indices: 4631855--4631904 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
4631845 TTAGATTATA
4631855 AAATAAAAAAATATC
1 AAATAAAAAAATATC
*
4631870 AAATAAAAAATAAATC
1 AAATAAAAAA-ATATC
* * *
4631886 AAAGAAATAAATATT
1 AAATAAAAAAATATC
4631901 AAAT
1 AAAT
4631905 TTTAAAAAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
15 16 0.57
16 12 0.43
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.22
Consensus pattern (15 bp):
AAATAAAAAAATATC
Found at i:4632024 original size:18 final size:18
Alignment explanation
Indices: 4632003--4632069 Score: 61
Period size: 17 Copynumber: 3.8 Consensus size: 18
4631993 AAGAAAATGT
4632003 TAAAAGAGAAAATAAAAA
1 TAAAAGAGAAAATAAAAA
*
4632021 T-AAA-ACAAAATAAAACA
1 TAAAAGAGAAAATAAAA-A
* *
4632038 -AAAAAATAAAAT-AAAA
1 TAAAAGAGAAAATAAAAA
4632054 TAAAAGAGAAATATAA
1 TAAAAGAGAAA-ATAA
4632070 TAAAATAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
16 11 0.28
17 18 0.46
18 9 0.23
19 1 0.03
ACGTcount: A:0.78, C:0.03, G:0.06, T:0.13
Consensus pattern (18 bp):
TAAAAGAGAAAATAAAAA
Found at i:4632025 original size:5 final size:5
Alignment explanation
Indices: 4632011--4632077 Score: 66
Period size: 5 Copynumber: 13.4 Consensus size: 5
4632001 GTTAAAAGAG
* * *
4632011 AAAAT AAAAAT AAAAC AAAAT AAAA- CAAA- AAAAT AAAAT AAAAT AAAAG
1 AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
*
4632060 AGAAAT ATAAT AAAAT AA
1 A-AAAT AAAAT AAAAT AA
4632078 TAAATAATAG
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
4 6 0.12
5 36 0.71
6 9 0.18
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:4632053 original size:34 final size:34
Alignment explanation
Indices: 4632011--4632081 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
4632001 GTTAAAAGAG
4632011 AAAATAAAAATAAAACA-AAATAAAACAAAAAAAT
1 AAAAT-AAAATAAAACAGAAATAAAACAAAAAAAT
* * * *
4632045 AAAATAAAATAAAAGAGAAATATAATAAAATAAT
1 AAAATAAAATAAAACAGAAATAAAACAAAAAAAT
4632079 AAA
1 AAA
4632082 TAATAGTAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 10 0.31
34 22 0.69
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (34 bp):
AAAATAAAATAAAACAGAAATAAAACAAAAAAAT
Found at i:4632148 original size:18 final size:18
Alignment explanation
Indices: 4632127--4632169 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
4632117 GTTATTTTTA
4632127 AAATAAAA-AATAAGAATT
1 AAATAAAAGAA-AAGAATT
*
4632145 AAATAAAAGAAAATAATT
1 AAATAAAAGAAAAGAATT
4632163 AAATAAA
1 AAATAAA
4632170 TAATTCTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAAGAAAAGAATT
Found at i:4635862 original size:21 final size:22
Alignment explanation
Indices: 4635843--4635981 Score: 110
Period size: 21 Copynumber: 6.2 Consensus size: 22
4635833 AATAATAAAC
*
4635843 TAATTATAATTAATATTAA-AA
1 TAATTATAATTAATATTAATAT
4635864 TAATTATATATT-ATAATTAATAT
1 TAATTATA-ATTAAT-ATTAATAT
4635887 TAA-TATAATTAATATTAATAT
1 TAATTATAATTAATATTAATAT
4635908 TAATTAT-ATTAATA-TAATA-
1 TAATTATAATTAATATTAATAT
* *
4635927 TAGTTTATAATTTGTAATATTAAAAT
1 TA-ATTATAA--T-TAATATTAATAT
* *
4635953 TAATATAAAATATAATATATAAAAT
1 TAAT-TATAAT-TAATAT-TAATAT
4635978 TAAT
1 TAAT
4635982 ATTAATATAA
Statistics
Matches: 98, Mismatches: 6, Indels: 24
0.77 0.05 0.19
Matches are distributed among these distances:
19 2 0.02
20 9 0.09
21 32 0.33
22 17 0.17
23 5 0.05
24 12 0.12
25 15 0.15
26 6 0.06
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (22 bp):
TAATTATAATTAATATTAATAT
Found at i:4635868 original size:15 final size:15
Alignment explanation
Indices: 4635848--4635925 Score: 83
Period size: 15 Copynumber: 5.3 Consensus size: 15
4635838 TAAACTAATT
4635848 ATAATTAATATTAAA
1 ATAATTAATATTAAA
4635863 ATAATTATATATT---
1 ATAATTA-ATATTAAA
*
4635876 ATAATTAATATTAAT
1 ATAATTAATATTAAA
4635891 ATAATTAATATTAATA
1 ATAATTAATATTAA-A
* *
4635907 TTAATT-ATATTAAT
1 ATAATTAATATTAAA
4635921 ATAAT
1 ATAAT
4635926 ATAGTTTATA
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
12 5 0.09
13 7 0.13
14 4 0.07
15 28 0.52
16 10 0.19
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATAATTAATATTAAA
Found at i:4635899 original size:9 final size:10
Alignment explanation
Indices: 4635855--4635923 Score: 51
Period size: 9 Copynumber: 7.1 Consensus size: 10
4635845 ATTATAATTA
*
4635855 ATATTAAAAT
1 ATATTAATAT
4635865 A-ATT-ATAT
1 ATATTAATAT
4635873 AT-TATAAT-T
1 ATAT-TAATAT
4635882 AATATTAATAT
1 -ATATTAATAT
4635893 A-ATTAATATT
1 ATATTAATA-T
4635903 AATATTAAT-T
1 -ATATTAATAT
4635913 ATATTAATAT
1 ATATTAATAT
4635923 A
1 A
4635924 ATATAGTTTA
Statistics
Matches: 48, Mismatches: 1, Indels: 20
0.70 0.01 0.29
Matches are distributed among these distances:
8 5 0.10
9 20 0.42
10 14 0.29
11 3 0.06
12 6 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (10 bp):
ATATTAATAT
Found at i:4635967 original size:31 final size:31
Alignment explanation
Indices: 4635844--4635997 Score: 96
Period size: 31 Copynumber: 4.7 Consensus size: 31
4635834 ATAATAAACT
* * *
4635844 AATTATAATTAATATTAAAATAATTATATATTAT
1 AATTAAAATTAATA-TAAAAT-ATAATATA-TAA
*
4635878 AATTAATATTAATATAATTAATATTAATAT-TAA
1 AATTAAAATTAATATAA--AATA-TAATATATAA
* *** * *
4635911 TTATATTAATA-TAATATAGTTTATAATTTGTAA
1 --A-ATTAAAATTAATATAAAATATAATATATAA
*
4635944 TATTAAAATTAATATAAAATATAATATATAA
1 AATTAAAATTAATATAAAATATAATATATAA
* *
4635975 AATTAATATTAATATAAACTATA
1 AATTAAAATTAATATAAAATATA
4635998 TGTTATAAAT
Statistics
Matches: 94, Mismatches: 18, Indels: 19
0.72 0.14 0.15
Matches are distributed among these distances:
30 6 0.06
31 37 0.39
32 5 0.05
33 10 0.11
34 13 0.14
35 16 0.17
36 7 0.07
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (31 bp):
AATTAAAATTAATATAAAATATAATATATAA
Found at i:4635987 original size:6 final size:6
Alignment explanation
Indices: 4635851--4635989 Score: 73
Period size: 6 Copynumber: 23.3 Consensus size: 6
4635841 ACTAATTATA
4635851 ATTAAT ATTAAAAT AATTATAT ATT-AT AATTAAT ATTAAT A-T-A- ATTAAT
1 ATTAAT ATT--AAT -ATTA-AT ATTAAT -ATTAAT ATTAAT ATTAAT ATTAAT
* * *
4635900 ATTAAT ATT-A- ATT-AT ATTAAT A-TAAT A-TAGT TTATAAT TTGTAAT
1 ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT ATTAAT AT-TAAT AT-TAAT
* * *
4635945 ATTAAA ATTAAT A-TAAA ATATAAT ATATAAA ATTAAT ATTAAT AT
1 ATTAAT ATTAAT ATTAAT AT-TAAT AT-TAAT ATTAAT ATTAAT AT
4635990 AAACTATATG
Statistics
Matches: 107, Mismatches: 11, Indels: 30
0.72 0.07 0.20
Matches are distributed among these distances:
3 1 0.01
4 6 0.06
5 20 0.19
6 45 0.42
7 27 0.25
8 5 0.05
9 3 0.03
ACGTcount: A:0.53, C:0.00, G:0.01, T:0.46
Consensus pattern (6 bp):
ATTAAT
Found at i:4636005 original size:31 final size:30
Alignment explanation
Indices: 4635945--4636128 Score: 124
Period size: 31 Copynumber: 5.7 Consensus size: 30
4635935 AATTTGTAAT
* * *
4635945 ATTAAAATTAATATAAAATATAATATATAAA
1 ATTAATATTAATATAAACTATAGT-TATAAA
4635976 ATTAATATTAATATAAACTATATGTTAT-AA
1 ATTAATATTAATATAAACTATA-GTTATAAA
* *
4636006 ATTATATAGTATAGTTTATAAACTATAGTTAATATA
1 ATTA-ATA-T-TA--ATATAAACTATAGTT-ATAAA
*
4636042 ATTAATATTAATAT--AGTATAGTTTATAAA
1 ATTAATATTAATATAAACTATAG-TTATAAA
*
4636071 CATTATACTATATTAATATAAATTATAGTTA-AGATA
1 -A-T-TA--ATATTAATATAAACTATAGTTATA-A-A
*
4636107 ATTAACATTAATATAAACTATA
1 ATTAATATTAATATAAACTATA
4636129 TAGTACATTA
Statistics
Matches: 124, Mismatches: 11, Indels: 36
0.73 0.06 0.21
Matches are distributed among these distances:
29 10 0.08
30 9 0.07
31 46 0.37
32 4 0.03
33 6 0.05
34 16 0.13
35 21 0.17
36 12 0.10
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.41
Consensus pattern (30 bp):
ATTAATATTAATATAAACTATAGTTATAAA
Found at i:4636024 original size:14 final size:14
Alignment explanation
Indices: 4636007--4636068 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
4635997 ATGTTATAAA
4636007 TTATATAGTATAGT
1 TTATATAGTATAGT
* *
4636021 TTATAAACTATAGT
1 TTATATAGTATAGT
* *
4636035 TAATATAATTAATA-T
1 TTATAT-AGT-ATAGT
*
4636050 TAATATAGTATAGT
1 TTATATAGTATAGT
4636064 TTATA
1 TTATA
4636069 AACATTATAC
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
13 3 0.08
14 23 0.61
15 9 0.24
16 3 0.08
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.47
Consensus pattern (14 bp):
TTATATAGTATAGT
Found at i:4636062 original size:29 final size:29
Alignment explanation
Indices: 4636029--4636121 Score: 78
Period size: 29 Copynumber: 3.0 Consensus size: 29
4636019 GTTTATAAAC
4636029 TATAGTTAATATAATTAATATTAATATAG
1 TATAGTTAATATAATTAATATTAATATAG
* * *
4636058 TATAGTTTATAAACATTATACTATATTAATATAAAT
1 TATAGTTAATATA-A-T-TA--ATATTAATAT--AG
* *
4636094 TATAGTTAAGATAATTAACATTAATATA
1 TATAGTTAATATAATTAATATTAATATA
4636122 AACTATATAG
Statistics
Matches: 50, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
29 12 0.24
30 1 0.02
31 10 0.20
32 2 0.04
33 2 0.04
34 11 0.22
35 1 0.02
36 11 0.22
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.43
Consensus pattern (29 bp):
TATAGTTAATATAATTAATATTAATATAG
Found at i:4636148 original size:21 final size:22
Alignment explanation
Indices: 4636111--4636185 Score: 93
Period size: 21 Copynumber: 3.5 Consensus size: 22
4636101 AAGATAATTA
4636111 ACATTAATATAAACTATATAGT
1 ACATTAATATAAACTATATAGT
4636133 ACATTAATAT-AACTATAT-GT
1 ACATTAATATAAACTATATAGT
* *
4636153 -TATAAAGTATAAACTATATAGT
1 ACATTAA-TATAAACTATATAGT
*
4636175 ACACTAATATA
1 ACATTAATATA
4636186 CAAACATGTA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
19 4 0.09
20 5 0.11
21 16 0.36
22 16 0.36
23 3 0.07
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.36
Consensus pattern (22 bp):
ACATTAATATAAACTATATAGT
Found at i:4636156 original size:131 final size:133
Alignment explanation
Indices: 4635901--4636163 Score: 292
Period size: 131 Copynumber: 2.0 Consensus size: 133
4635891 ATAATTAATA
** *
4635901 TTAATATTAATTATATTAATATAATATAGTTTATAATTTGTAATATTAAAATTAATATAAAATAT
1 TTAATATTAATTATATTAATATAATATAGTTTATAACATGTAATACTAAAATTAATATAAAATAT
* * *
4635966 AATATATAAAATTAATATTAATATAAACTATATGTTATAAATTATATAGTATAGTTTATAAACTA
66 AATATATAAAATTAACATTAATATAAACTATATGTCATAAATTATATACTATAGTTTATAAACTA
4636031 TAG
131 TAG
* * *
4636034 TTAATA-TAATTAATATTAATATAGTATAGTTTATAAACAT-T-ATACT-ATATTAATATAAATT
1 TTAATATTAATT-ATATTAATATAATATAGTTTAT-AACATGTAATACTAAAATTAATATAAAAT
* *
4636095 ATAGT-TA-AGATAATTAACATTAATATAAACTATATAGTACATTAA-TATA-ACTATA-TGTTA
64 ATAATATATA-A-AATTAACATTAATATAAACTATAT-GT-CATAAATTATATACTATAGT-TTA
*
4636155 TAAAGTATA
124 TAAACTATA
4636164 AACTATATAG
Statistics
Matches: 111, Mismatches: 12, Indels: 16
0.80 0.09 0.12
Matches are distributed among these distances:
129 1 0.01
130 4 0.04
131 56 0.50
132 15 0.14
133 32 0.29
134 3 0.03
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.43
Consensus pattern (133 bp):
TTAATATTAATTATATTAATATAATATAGTTTATAACATGTAATACTAAAATTAATATAAAATAT
AATATATAAAATTAACATTAATATAAACTATATGTCATAAATTATATACTATAGTTTATAAACTA
TAG
Found at i:4636221 original size:13 final size:13
Alignment explanation
Indices: 4636203--4636286 Score: 54
Period size: 13 Copynumber: 6.8 Consensus size: 13
4636193 GTACATTAAG
4636203 TTACATATATAGT
1 TTACATATATAGT
* *
4636216 TTACATGTATACAT
1 TTACATATATA-GT
*
4636230 ATAC-TATA-AGT
1 TTACATATATAGT
* * *
4636241 TTATACATACA-T
1 TTACATATATAGT
*
4636253 GTAC-TATA-AG-
1 TTACATATATAGT
4636263 TTACATATATAGT
1 TTACATATATAGT
4636276 TTACATATATA
1 TTACATATATA
4636287 CATATACTAT
Statistics
Matches: 52, Mismatches: 12, Indels: 14
0.67 0.15 0.18
Matches are distributed among these distances:
10 4 0.08
11 10 0.19
12 9 0.17
13 25 0.48
14 4 0.08
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.42
Consensus pattern (13 bp):
TTACATATATAGT
Found at i:4636253 original size:60 final size:60
Alignment explanation
Indices: 4636182--4636297 Score: 198
Period size: 60 Copynumber: 1.9 Consensus size: 60
4636172 AGTACACTAA
*
4636182 TATACAAACATGTAC-ATTAAGTTACATATATAGTTTACATGTATACATATACTATAAGTT
1 TATACAAACATGTACTA-TAAGTTACATATATAGTTTACATATATACATATACTATAAGTT
*
4636242 TATACATACATGTACTATAAGTTACATATATAGTTTACATATATACATATACTATA
1 TATACAAACATGTACTATAAGTTACATATATAGTTTACATATATACATATACTATA
4636298 GGTTACATAT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
60 52 0.98
61 1 0.02
ACGTcount: A:0.42, C:0.12, G:0.07, T:0.39
Consensus pattern (60 bp):
TATACAAACATGTACTATAAGTTACATATATAGTTTACATATATACATATACTATAAGTT
Found at i:4636341 original size:7 final size:7
Alignment explanation
Indices: 4636331--4636397 Score: 55
Period size: 7 Copynumber: 9.7 Consensus size: 7
4636321 TATTTATAGT
4636331 GTTTAGG
1 GTTTAGG
4636338 GTTTAGG
1 GTTTAGG
**
4636345 GTTTATA
1 GTTTAGG
* *
4636352 TTTTA-T
1 GTTTAGG
*
4636358 ATTTAGG
1 GTTTAGG
4636365 GTTTAGG
1 GTTTAGG
* **
4636372 GTTAATA
1 GTTTAGG
4636379 GTTTAGG
1 GTTTAGG
4636386 GTTTAGG
1 GTTTAGG
4636393 GTTTA
1 GTTTA
4636398 AGATTTAGGT
Statistics
Matches: 46, Mismatches: 13, Indels: 2
0.75 0.21 0.03
Matches are distributed among these distances:
6 4 0.09
7 42 0.91
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (7 bp):
GTTTAGG
Found at i:4636362 original size:27 final size:28
Alignment explanation
Indices: 4636332--4636397 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 28
4636322 ATTTATAGTG
* * *
4636332 TTTAGGGTTTAGGGTTTATATTTTA-TA
1 TTTAGGGTTTAGGGTTAATAGTTTAGGA
*
4636359 TTTAGGGTTTAGGGTTAATAGTTTAGGG
1 TTTAGGGTTTAGGGTTAATAGTTTAGGA
4636387 TTTAGGGTTTA
1 TTTAGGGTTTA
4636398 AGATTTAGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 23 0.68
28 11 0.32
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (28 bp):
TTTAGGGTTTAGGGTTAATAGTTTAGGA
Found at i:4636404 original size:21 final size:20
Alignment explanation
Indices: 4636358--4636406 Score: 71
Period size: 21 Copynumber: 2.4 Consensus size: 20
4636348 TATATTTTAT
*
4636358 ATTTAGGGTTTAGGGTTAAT
1 ATTTAGGGTTTAGGGTTAAG
4636378 AGTTTAGGGTTTAGGGTTTAAG
1 A-TTTAGGGTTTAGGG-TTAAG
4636400 ATTTAGG
1 ATTTAGG
4636407 TTTTTTATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 1 0.04
21 20 0.77
22 5 0.19
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (20 bp):
ATTTAGGGTTTAGGGTTAAG
Found at i:4636469 original size:2 final size:2
Alignment explanation
Indices: 4636458--4636673 Score: 221
Period size: 2 Copynumber: 109.5 Consensus size: 2
4636448 GCATAGTGTT
4636458 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
4636499 TA TA TA TA TA TA TA GT- TA TA CA TA AA TA TA TA CTA TA T- TA -A
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
* * * * *
4636540 TA TA AA T- TA TA T- TT TA TA TA TA T- TT TA TA TA GTT TA TA CA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* * * * *
4636580 TA TA TA GTT TA TA TA CA TA CA TA CA TA CA TA TA TA TA TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
4636623 TA TA TA TA TA TA CA TA CA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4636665 TA TA TA TA T
1 TA TA TA TA T
4636674 TAATATAAAT
Statistics
Matches: 177, Mismatches: 26, Indels: 22
0.79 0.12 0.10
Matches are distributed among these distances:
1 7 0.04
2 165 0.93
3 5 0.03
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (2 bp):
TA
Found at i:4636713 original size:142 final size:139
Alignment explanation
Indices: 4636468--4636732 Score: 417
Period size: 140 Copynumber: 1.9 Consensus size: 139
4636458 TATAATATAT
* *
4636468 ATATATATATATATATATATATATATATATATATATATATATATAGTTATACATAAATATATACT
1 ATATATATATATATATATATATATATACATACATATATATATATAG-TATACATAAATATATACT
4636533 ATATTAATATAAATTATATTTTATATATATTTTATATAGTTTATACATATATAGTTTATATACAT
65 ATATTAATATAAATTATATTTTATATATATTTTATATAGTTTATACATATATAGTTTATATACAT
4636598 ACATACATAC
130 ACATACATAC
* *
4636608 ATATATATATATATATATATATATATACATACATATATATATATA-TATATATATATATATA-TA
1 ATATATATATATATATATATATATATACATACATATATATATATAGTATACATAAATATATACTA
*
4636671 TATTAATATAAATTATATTTTATAAACTATATACTTTTTATAGTTTATACATATATAGTTTA
66 TATTAATATAAATTATATTTTAT--A-TATAT--TTTATATAGTTTATACATATATAGTTTA
4636733 GGGTTTATGA
Statistics
Matches: 115, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
137 25 0.22
138 14 0.12
139 1 0.01
140 48 0.42
142 27 0.23
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.48
Consensus pattern (139 bp):
ATATATATATATATATATATATATATACATACATATATATATATAGTATACATAAATATATACTA
TATTAATATAAATTATATTTTATATATATTTTATATAGTTTATACATATATAGTTTATATACATA
CATACATAC
Found at i:4636847 original size:7 final size:7
Alignment explanation
Indices: 4636835--4636936 Score: 96
Period size: 7 Copynumber: 14.6 Consensus size: 7
4636825 TACATATATA
*
4636835 GTTTAGG
1 GTTTAAG
*
4636842 GTTTAGG
1 GTTTAAG
*
4636849 GTTTAGG
1 GTTTAAG
*
4636856 GTTTAGG
1 GTTTAAG
*
4636863 GTTTAGG
1 GTTTAAG
* *
4636870 GTTAAAT
1 GTTTAAG
4636877 GTTTAAG
1 GTTTAAG
*
4636884 GTTTATG
1 GTTTAAG
* *
4636891 ATTTATG
1 GTTTAAG
* *
4636898 ATTTAGG
1 GTTTAAG
4636905 GTTTAAG
1 GTTTAAG
4636912 GTTTAAG
1 GTTTAAG
4636919 GTTTAAG
1 GTTTAAG
4636926 GTTTAAG
1 GTTTAAG
4636933 GTTT
1 GTTT
4636937 TTTTTATAAA
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 85 1.00
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (7 bp):
GTTTAAG
Found at i:4637107 original size:4 final size:4
Alignment explanation
Indices: 4637098--4640159 Score: 5739
Period size: 4 Copynumber: 771.5 Consensus size: 4
4637088 TAGTTTATAC
4637098 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637146 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637194 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637242 ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637289 ATGT ATGT ATGT ATGT ATGT ATGT ATGT A--T ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637335 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637383 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637431 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637479 ATGT ATGT ATGT ATTGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT A-TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637528 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637576 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637624 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637672 ATGT ATGT ATGT -TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637719 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637767 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637815 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637863 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637911 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4637959 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638007 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638055 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638103 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638151 ATGT A--T ATGT ATGT ATGT ATGT ATG- -TGT ATGT ATGT ATGT ATG-
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638194 -TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
4638241 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGC ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638289 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG-
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638336 -TGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638383 A-GT ATGT ATGT ATGT ATG- -TGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
4638428 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT GCATGC
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT --ATGT
* *
4638478 ATGC ATGC ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
* * *
4638526 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGC ATGC ATGC ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
* * * * * *
4638574 ATGT ATGT ATGT ATGT ATGC ATGC ATGC ATGC ATGC ATGC ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638622 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638669 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638717 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638765 ATGT A-GT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT A-GT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638811 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638859 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638907 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4638955 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639003 A--T ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639049 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639097 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATG- -TGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639143 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639191 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639239 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639287 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639335 ATGT ATGT ATGT ATGT ATGT ATG- -TGT ATGT ATG- -TGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639379 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639427 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639475 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639523 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639571 ATGT ATGT ATGT ATGT ATGT A-GT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639618 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639666 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639714 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639762 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639810 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639858 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639906 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4639954 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
4640002 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
4640050 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGC ATGT ATG-
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
* * *
4640097 ATGC ATGC ATGC ATGT ATGT ATGT AATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT -ATGT ATGT ATGT ATGT ATGT ATGT
4640146 ATGT ATGT ATGT AT
1 ATGT ATGT ATGT AT
4640160 ACAAGATTAA
Statistics
Matches: 3015, Mismatches: 11, Indels: 64
0.98 0.00 0.02
Matches are distributed among these distances:
2 20 0.01
3 24 0.01
4 2960 0.98
5 8 0.00
6 3 0.00
ACGTcount: A:0.25, C:0.01, G:0.25, T:0.49
Consensus pattern (4 bp):
ATGT
Found at i:4640493 original size:25 final size:25
Alignment explanation
Indices: 4640464--4640533 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
4640454 TTAATATAAA
4640464 TTATAGTTTATAAACTATATACTTC
1 TTATAGTTTATAAACTATATACTTC
*
4640489 TTATAGTTTATAAACTATATACTTT
1 TTATAGTTTATAAACTATATACTTC
*
4640514 TTATAGTTTATACA-TATATA
1 TTATAGTTTATAAACTATATA
4640534 GTTTACATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
24 6 0.14
25 37 0.86
ACGTcount: A:0.37, C:0.09, G:0.04, T:0.50
Consensus pattern (25 bp):
TTATAGTTTATAAACTATATACTTC
Found at i:4640567 original size:13 final size:13
Alignment explanation
Indices: 4640515--4640587 Score: 74
Period size: 13 Copynumber: 5.3 Consensus size: 13
4640505 ATATACTTTT
4640515 TATAGTTTATACATA
1 TATAGTTTAT--ATA
*
4640530 TATAGTTTACATA
1 TATAGTTTATATA
4640543 TATAGTTTATATA
1 TATAGTTTATATA
*
4640556 TATAGTTCATATAAA
1 TATAGTT--TATATA
* *
4640571 CATAATTTATATA
1 TATAGTTTATATA
4640584 TATA
1 TATA
4640588 ACTTAAAATA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
13 30 0.61
15 19 0.39
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (13 bp):
TATAGTTTATATA
Found at i:4640568 original size:15 final size:14
Alignment explanation
Indices: 4640515--4640653 Score: 65
Period size: 13 Copynumber: 10.8 Consensus size: 14
4640505 ATATACTTTT
*
4640515 TATAGTTTATACATA
1 TATAG-TTATATATA
*
4640530 TATAGTT-TACATA
1 TATAGTTATATATA
4640543 TATAGTT-TATATA
1 TATAGTTATATATA
*
4640556 TATAGTTCATATAAA
1 TATAGTT-ATATATA
* *
4640571 CATAATT-TATATA
1 TATAGTTATATATA
*
4640584 TATAACTTA-A-A-A
1 TAT-AGTTATATATA
4640596 TA-A-TTATATA-A
1 TATAGTTATATATA
* * *
4640607 TTTA-TAATATAAA
1 TATAGTTATATATA
4640620 TATAG-T-T-TATA
1 TATAGTTATATATA
4640631 TATAGTT-TATATA
1 TATAGTTATATATA
4640644 TATA-TTATAT
1 TATAGTTATAT
4640654 TTTTTCAATT
Statistics
Matches: 100, Mismatches: 12, Indels: 26
0.72 0.09 0.19
Matches are distributed among these distances:
9 3 0.03
10 2 0.02
11 11 0.11
12 15 0.15
13 48 0.48
14 6 0.06
15 15 0.15
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (14 bp):
TATAGTTATATATA
Found at i:4640618 original size:20 final size:19
Alignment explanation
Indices: 4640581--4640634 Score: 53
Period size: 18 Copynumber: 3.0 Consensus size: 19
4640571 CATAATTTAT
*
4640581 ATATATAACTTA-AA-ATA
1 ATATATAATTTATAATATA
4640598 ATTATATAATTTATAATATA
1 A-TATATAATTTATAATATA
*
4640618 A-ATATAGTTTAT-ATATA
1 ATATATAATTTATAATATA
4640635 GTTTATATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
17 6 0.19
18 20 0.62
19 2 0.06
20 4 0.12
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
ATATATAATTTATAATATA
Found at i:4640653 original size:11 final size:11
Alignment explanation
Indices: 4640619--4640645 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
4640609 TATAATATAA
4640619 ATATAGTTTAT
1 ATATAGTTTAT
4640630 ATATAGTTTAT
1 ATATAGTTTAT
4640641 ATATA
1 ATATA
4640646 TATTATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (11 bp):
ATATAGTTTAT
Found at i:4648340 original size:29 final size:29
Alignment explanation
Indices: 4648307--4648394 Score: 74
Period size: 31 Copynumber: 3.0 Consensus size: 29
4648297 ATTGGTTCTT
4648307 AAACTTTTGAATATTCTAATTTCATCCCC
1 AAACTTTTGAATATTCTAATTTCATCCCC
* **
4648336 AAAC-TTTGAACCTCATTCTAAATT-AGTCCTT
1 AAACTTTTGAA--T-ATTCTAATTTCA-TCCCC
*
4648367 AAACTTTTGAACATT-TCAATTTCATCCC
1 AAACTTTTGAATATTCT-AATTTCATCCC
4648395 TAAATTATAA
Statistics
Matches: 46, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
28 7 0.15
29 14 0.30
30 3 0.07
31 16 0.35
32 6 0.13
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.40
Consensus pattern (29 bp):
AAACTTTTGAATATTCTAATTTCATCCCC
Found at i:4648371 original size:31 final size:32
Alignment explanation
Indices: 4648286--4648378 Score: 88
Period size: 31 Copynumber: 3.0 Consensus size: 32
4648276 AAAATATAAC
* * *
4648286 CCTCATTTTAAATTGGTTCTTAAACTTTTGAA
1 CCTCATTCTAAATTAGTCCTTAAACTTTTGAA
* **
4648318 --T-ATTCTAATTTCA-TCCCCAAAC-TTTGAA
1 CCTCATTCTAAATT-AGTCCTTAAACTTTTGAA
4648346 CCTCATTCTAAATTAGTCCTTAAACTTTTGAA
1 CCTCATTCTAAATTAGTCCTTAAACTTTTGAA
4648378 C
1 C
4648379 ATTTCAATTT
Statistics
Matches: 46, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
28 6 0.13
29 14 0.30
30 3 0.07
31 16 0.35
32 7 0.15
ACGTcount: A:0.30, C:0.22, G:0.06, T:0.42
Consensus pattern (32 bp):
CCTCATTCTAAATTAGTCCTTAAACTTTTGAA
Found at i:4648388 original size:60 final size:60
Alignment explanation
Indices: 4648275--4648460 Score: 209
Period size: 60 Copynumber: 3.1 Consensus size: 60
4648265 CATATATTCT
* * * *
4648275 CAAAATATAACCCTCATTTTAAATTGGTTCTTAAACTTTTGAATA-TTCTAATTTCATCCC
1 CAAATTATAACCCTCATTCTAAATTGGTCCTTAAACTTTTGAACATTTC-AATTTCATCCC
*
4648335 CAAACTT-TGAA-CCTCATTCTAAATTAGTCCTTAAACTTTTGAACATTTCAATTTCATCCC
1 CAAA-TTAT-AACCCTCATTCTAAATTGGTCCTTAAACTTTTGAACATTTCAATTTCATCCC
* * * **
4648395 TAAATTATAACCCTCTTTCTAAATTGGTCAC-CAAACTTTTTGAACATCCCAATTTCATCCC
1 CAAATTATAACCCTCATTCTAAATTGGTC-CTTAAAC-TTTTGAACATTTCAATTTCATCCC
4648456 CAAAT
1 CAAAT
4648461 CCATCCAAAT
Statistics
Matches: 107, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
59 4 0.04
60 70 0.65
61 33 0.31
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (60 bp):
CAAATTATAACCCTCATTCTAAATTGGTCCTTAAACTTTTGAACATTTCAATTTCATCCC
Found at i:4648398 original size:29 final size:30
Alignment explanation
Indices: 4648306--4648398 Score: 86
Period size: 29 Copynumber: 3.1 Consensus size: 30
4648296 AATTGGTTCT
*
4648306 TAAACTTTTGAATA-TTCTAATTTCATCCC
1 TAAACTTTTGAACATTTCTAATTTCATCCC
* * * *
4648335 CAAAC-TTTGAACCTCATTCTAAATT-AGTCCT
1 TAAACTTTTGAACAT--TTCTAATTTCA-TCCC
4648366 TAAACTTTTGAACATTTC-AATTTCATCCC
1 TAAACTTTTGAACATTTCTAATTTCATCCC
4648395 TAAA
1 TAAA
4648399 TTATAACCCT
Statistics
Matches: 49, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
28 6 0.12
29 15 0.31
30 5 0.10
31 15 0.31
32 8 0.16
ACGTcount: A:0.33, C:0.23, G:0.04, T:0.40
Consensus pattern (30 bp):
TAAACTTTTGAACATTTCTAATTTCATCCC
Found at i:4652052 original size:35 final size:35
Alignment explanation
Indices: 4652006--4652081 Score: 125
Period size: 35 Copynumber: 2.2 Consensus size: 35
4651996 AAAACAGTCC
* *
4652006 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
*
4652041 TCAATTTCATTCTAAACCCTAAATTCCAAAATAAT
1 TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
4652076 TCAATT
1 TCAATT
4652082 AAATTCAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.39, C:0.24, G:0.01, T:0.36
Consensus pattern (35 bp):
TCAATTTCATTCTAAACCCCAAATTCCAAAATAAT
Found at i:4652625 original size:130 final size:130
Alignment explanation
Indices: 4652478--4652725 Score: 388
Period size: 130 Copynumber: 1.9 Consensus size: 130
4652468 TATTTATATA
* ** *
4652478 ATCAATATGGTCATAAATTAAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTG
1 ATCAATATGGTCATAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTA
* * *
4652543 TTAGCACATGATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
66 TTAACACATAATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
* *
4652608 ATCAATTTGGTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTA
1 ATCAATATGGTCATAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTA
* * *
4652673 TTAACACATAATCATGATATATGTTATTGGTGACACATGTCACCACCTAATTA
66 TTAACACATAATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTA
4652726 GAAGAAAATT
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
130 106 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (130 bp):
ATCAATATGGTCATAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTA
TTAACACATAATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCT
Found at i:4652756 original size:130 final size:129
Alignment explanation
Indices: 4652487--4652756 Score: 292
Period size: 130 Copynumber: 2.1 Consensus size: 129
4652477 AATCAATATG
* ** * *
4652487 GTCATAAATTAAATAGAATTTAATAAATTAATCATTTAATTAGGATCTGACATGTGTTAGCACAT
1 GTCA-AAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTATTAACACAT
* * *** * * ****
4652552 GATCATGACACGTGTCATTGGTGACACATGTCACCACCTAATTATTTATATATGCTATCAATTTG
65 AATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAA
*
4652617 GTCCTAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTATTAACACAT
1 GT-CAAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTATTAACACAT
* * * *
4652682 AATCATGATATATGTTATTGGTGACACATGTCACCACCTAATTAGAAGAAAATTAAGTTA-CAAA
65 AATCATGACACATGTCATTGGTGACACATGTCACCACCTAATT--AAGAAAA-TAAGCTATCAAA
4652746 GAA
127 GAA
4652749 GT-AAAATT
1 GTCAAAATT
4652757 TGGGTCTTGG
Statistics
Matches: 114, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
130 100 0.88
131 1 0.01
132 8 0.07
133 5 0.04
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.34
Consensus pattern (129 bp):
GTCAAAATTAAATAAAATTTAATAAATTAATCATTTAACCAGGATCTGACATGTATTAACACATA
ATCATGACACATGTCATTGGTGACACATGTCACCACCTAATTAAGAAAATAAGCTATCAAAGAA
Found at i:4653081 original size:28 final size:27
Alignment explanation
Indices: 4653050--4653112 Score: 63
Period size: 28 Copynumber: 2.3 Consensus size: 27
4653040 AGTTGATACA
*
4653050 ATATTTTAAAAGAATAAATTTAAGATTT
1 ATATTTTAAAA-AATAAATTTAAGAATT
** * *
4653078 ATATATTTTTAAACTAAATTTAATAATT
1 ATAT-TTTAAAAAATAAATTTAAGAATT
4653106 ATATTTT
1 ATATTTT
4653113 TCATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.10
28 21 0.72
29 5 0.17
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (27 bp):
ATATTTTAAAAAATAAATTTAAGAATT
Found at i:4653995 original size:2 final size:2
Alignment explanation
Indices: 4653988--4654015 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4653978 AGCAAGCAAC
4653988 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4654016 AAAAAATAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4654978 original size:5 final size:5
Alignment explanation
Indices: 4654970--4654998 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
4654960 AAACAAAACA
4654970 AAATT AAATT AAATT AAATT AAATT AAAT
1 AAATT AAATT AAATT AAATT AAATT AAAT
4654999 GAAGAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AAATT
Found at i:4655076 original size:30 final size:31
Alignment explanation
Indices: 4655029--4655086 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
4655019 AAAGAAGTAA
* *
4655029 AAATATAAAATATAAAAAATG-TTAAAAGAG
1 AAATAAAAAATATAAAAAAAGTTTAAAAGAG
4655059 AAATAAAAAAGTA-AAAAAAAGTTTAAAA
1 AAATAAAAAA-TATAAAAAAAGTTTAAAA
4655087 ATAAAAATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 16 0.67
31 8 0.33
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.21
Consensus pattern (31 bp):
AAATAAAAAATATAAAAAAAGTTTAAAAGAG
Found at i:4655130 original size:12 final size:11
Alignment explanation
Indices: 4655108--4655140 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
4655098 GAACATGTTA
4655108 AAATTAAAAAT
1 AAATTAAAAAT
4655119 AAATTAATAAAT
1 AAATTAA-AAAT
4655131 AAA-TAAAAAT
1 AAATTAAAAAT
4655141 TTAAAGGATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 4 0.19
11 10 0.48
12 7 0.33
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AAATTAAAAAT
Found at i:4656366 original size:25 final size:27
Alignment explanation
Indices: 4656305--4656368 Score: 78
Period size: 25 Copynumber: 2.4 Consensus size: 27
4656295 GAAAAACAAC
4656305 AATAATAATAATAATAAATAATTAAATA
1 AATAATAAT-ATAATAAATAATTAAATA
* *
4656333 AATATTAATATAATATATAA-TAAA-A
1 AATAATAATATAATAAATAATTAAATA
*
4656358 ACTAATAATAT
1 AATAATAATAT
4656369 GTTTTCAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
25 10 0.31
26 4 0.12
27 10 0.31
28 8 0.25
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (27 bp):
AATAATAATATAATAAATAATTAAATA
Found at i:4656440 original size:34 final size:33
Alignment explanation
Indices: 4656397--4656499 Score: 109
Period size: 34 Copynumber: 3.0 Consensus size: 33
4656387 TTATATATGT
4656397 TTTCAAAAATTATTTTTCAAAACTATATAATATA
1 TTTCAAAAATT-TTTTTCAAAACTATATAATATA
** *
4656431 TTTCAAAAATTTTTTTTGAAACTATATTATACGT-
1 TTTCAAAAATTTTTTTCAAAACTATATAATA--TA
* * *
4656465 TTTAAAAAATGTGTTTTCAAAACTAGATAATATA
1 TTTCAAAAAT-TTTTTTCAAAACTATATAATATA
4656499 T
1 T
4656500 ATGTTTTCAA
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
33 18 0.32
34 21 0.38
35 17 0.30
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.45
Consensus pattern (33 bp):
TTTCAAAAATTTTTTTCAAAACTATATAATATA
Found at i:4656542 original size:75 final size:69
Alignment explanation
Indices: 4656376--4656561 Score: 205
Period size: 75 Copynumber: 2.6 Consensus size: 69
4656366 TATGTTTTCA
* *
4656376 AAAAATATATATTATATATGTTTTCAAAAAT-TATTTTTCAAAACTATATAATATATTTCAAAAA
1 AAAAATATATA-T-TATACGTTTTAAAAAATGTA-TTTTCAAAACTATATAATATATTTCAAAAA
4656440 TTTTTTT
63 TTTTTTT
** * * *
4656447 TGAAA-CTATATTATACGTTTTAAAAAATGTGTTTTCAAAACTAGATAATATATATGTTTTCAAA
1 AAAAATATATATTATACGTTTTAAAAAATGTATTTTCAAAACT--AT-ATA-ATAT-ATTTCAAA
4656511 AATTGTTTTT
61 AATT-TTTTT
*
4656521 AAAAATATATATTATACGTTTTTAAAAATGTATTTTCAAAA
1 AAAAATATATATTATACGTTTTAAAAAATGTATTTTCAAAA
4656562 AATATTTTCA
Statistics
Matches: 95, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
68 26 0.27
69 2 0.02
70 6 0.06
71 6 0.06
72 4 0.04
73 11 0.12
74 8 0.08
75 32 0.34
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (69 bp):
AAAAATATATATTATACGTTTTAAAAAATGTATTTTCAAAACTATATAATATATTTCAAAAATTT
TTTT
Found at i:4656561 original size:14 final size:13
Alignment explanation
Indices: 4656551--4656575 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4656541 TTTAAAAATG
4656551 TATTTTCAAAAAA
1 TATTTTCAAAAAA
4656564 TATTTTCAAAAA
1 TATTTTCAAAAA
4656576 CAACATTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (13 bp):
TATTTTCAAAAAA
Found at i:4658618 original size:19 final size:17
Alignment explanation
Indices: 4658582--4658621 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
4658572 AATTGAAAAA
4658582 ATATAATATAAATATAT
1 ATATAATATAAATATAT
* *
4658599 ATATAATATAAGTTTAT
1 ATATAATATAAATATAT
4658616 ATATAA
1 ATATAA
4658622 ACTATATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
ATATAATATAAATATAT
Found at i:4658627 original size:19 final size:19
Alignment explanation
Indices: 4658594--4658646 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
4658584 ATAATATAAA
4658594 TATATATATAA-TATAAGT-T
1 TATATATA-AACTATAA-TAT
4658613 TATATATAAACTAT-ATAT
1 TATATATAAACTATAATAT
4658631 TATATTATAAACTATA
1 TATA-TATAAACTATA
4658647 TAATTATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 1 0.03
18 8 0.27
19 21 0.70
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (19 bp):
TATATATAAACTATAATAT
Found at i:4658635 original size:18 final size:18
Alignment explanation
Indices: 4658612--4658671 Score: 70
Period size: 18 Copynumber: 3.3 Consensus size: 18
4658602 TAATATAAGT
4658612 TTATATATAAACTATATA
1 TTATATATAAACTATATA
4658630 TTATATTATAAACTATATAA
1 TTATA-TATAAACTATAT-A
* *
4658650 TTAT-TAAAAATTATATA
1 TTATATATAAACTATATA
4658667 -TATAT
1 TTATAT
4658672 TATGTTTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
16 3 0.08
17 2 0.05
18 15 0.41
19 12 0.32
20 5 0.14
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
TTATATATAAACTATATA
Found at i:4658882 original size:19 final size:20
Alignment explanation
Indices: 4658860--4658904 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
4658850 TTGAGAATAT
4658860 AGGGAAATTAAG-AATTTAG
1 AGGGAAATTAAGAAATTTAG
**
4658879 AGGGAAATTGGGAAATTTAG
1 AGGGAAATTAAGAAATTTAG
4658899 AGGGAA
1 AGGGAA
4658905 TAAAAGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.44, C:0.00, G:0.33, T:0.22
Consensus pattern (20 bp):
AGGGAAATTAAGAAATTTAG
Found at i:4659128 original size:2 final size:2
Alignment explanation
Indices: 4659121--4659277 Score: 64
Period size: 2 Copynumber: 80.0 Consensus size: 2
4659111 TTTAATTTTC
* * *
4659121 TA TA TA TA TA TA TA TA TA TA TA TG TA TG TA TA TA AA CTA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
** * * * * *
4659164 CG TA TA AA CTA TA TA -A AA TA TA TA GTT TA TA AA T- TA TA -A TT
1 TA TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA
*
4659205 TA TA T- TA -A TA TA GTA TA TA TA TG TA TA TA TA -A CTA -A TA TA
1 TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA -TA TA TA TA
* *
4659245 -A GTA -A TC TA TA GA GTA TA TA TA TA TA T- TA TA TA
1 TA -TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
4659278 GAAACACTAG
Statistics
Matches: 113, Mismatches: 25, Indels: 34
0.66 0.15 0.20
Matches are distributed among these distances:
1 10 0.09
2 95 0.84
3 8 0.07
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (2 bp):
TA
Found at i:4661576 original size:31 final size:31
Alignment explanation
Indices: 4661471--4661591 Score: 122
Period size: 31 Copynumber: 3.9 Consensus size: 31
4661461 GTTGAGAGTA
*
4661471 TACCTATGTTCTACA-GAACATATGGACAGAAT
1 TACCTATGTTCTA-AGGAACATATGGACAG-TT
* *
4661503 TACCTATG-TCT-TGCGAGACATATGGACAGTA
1 TACCTATGTTCTAAG-GA-ACATATGGACAGTT
4661534 TACCTATGTTCTAAGGAACATATGGACAGTT
1 TACCTATGTTCTAAGGAACATATGGACAGTT
* ** *
4661565 TACCTAGGTTCTTCGGAACCTATGGAC
1 TACCTATGTTCTAAGGAACATATGGAC
4661592 GGTTGCCAAG
Statistics
Matches: 75, Mismatches: 9, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
31 49 0.65
32 25 0.33
33 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.30
Consensus pattern (31 bp):
TACCTATGTTCTAAGGAACATATGGACAGTT
Found at i:4662739 original size:25 final size:25
Alignment explanation
Indices: 4662711--4662764 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
4662701 ATATGATAGA
4662711 CCTGAAGGTAATAGCATTCACCTGC
1 CCTGAAGGTAATAGCATTCACCTGC
4662736 CCTGAAGGTAATAGCATTCACCTGC
1 CCTGAAGGTAATAGCATTCACCTGC
4662761 CCTG
1 CCTG
4662765 GTCAGGCAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (25 bp):
CCTGAAGGTAATAGCATTCACCTGC
Found at i:4666397 original size:31 final size:31
Alignment explanation
Indices: 4666309--4666436 Score: 134
Period size: 31 Copynumber: 4.1 Consensus size: 31
4666299 AAGAGTCGAG
4666309 AGTATACCTATGTTCTACGGAACATATGGAC
1 AGTATACCTATGTTCTACGGAACATATGGAC
* * *
4666340 AGAATTAACTATG-TCTTTC-GAGACATATGGAC
1 AGTA-TACCTATGTTC-TACGGA-ACATATGGAC
*
4666372 AGTATACCTATGTTCTAAGGAACATATGGAC
1 AGTATACCTATGTTCTACGGAACATATGGAC
* * * * *
4666403 AGTTTACCTAGGTTATTCGGAACCTATGGAC
1 AGTATACCTATGTTCTACGGAACATATGGAC
4666434 AGT
1 AGT
4666437 TGCCAAGGAT
Statistics
Matches: 79, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
31 53 0.67
32 26 0.33
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.30
Consensus pattern (31 bp):
AGTATACCTATGTTCTACGGAACATATGGAC
Found at i:4667568 original size:7 final size:7
Alignment explanation
Indices: 4667541--4667611 Score: 63
Period size: 7 Copynumber: 10.3 Consensus size: 7
4667531 TAGTTTATTA
4667541 AAACCCT
1 AAACCCT
*
4667548 AAACCAT
1 AAACCCT
*
4667555 AATCCCT
1 AAACCCT
4667562 AAACCCT
1 AAACCCT
**
4667569 AAACTTT
1 AAACCCT
**
4667576 AAACTAT
1 AAACCCT
*
4667583 AAACACT
1 AAACCCT
4667590 -AACCCT
1 AAACCCT
*
4667596 AAACCAT
1 AAACCCT
4667603 AAACCCT
1 AAACCCT
4667610 AA
1 AA
4667612 TATAAATGGA
Statistics
Matches: 51, Mismatches: 12, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
6 5 0.10
7 46 0.90
ACGTcount: A:0.48, C:0.32, G:0.00, T:0.20
Consensus pattern (7 bp):
AAACCCT
Found at i:4668006 original size:2 final size:2
Alignment explanation
Indices: 4667931--4667997 Score: 66
Period size: 2 Copynumber: 34.0 Consensus size: 2
4667921 TAAATAATTT
* * *
4667931 TA TA TA -A TA TG TA TG TA TA AA CTA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
**
4667973 TA TA TA TA TA -A CC TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
4667998 AACTATATAA
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
1 2 0.04
2 50 0.94
3 1 0.02
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (2 bp):
TA
Found at i:4668377 original size:507 final size:504
Alignment explanation
Indices: 4667582--4670734 Score: 3882
Period size: 507 Copynumber: 6.2 Consensus size: 504
4667572 CTTTAAACTA
*
4667582 TAAACACTAACCCTAAACCATAAACCCTAATATAAATGGACTAGCACTAATGCATATATATTTGT
1 TAAACACTAACCCTAAACCATAAACCCTAATATAAATAGACTAGCACTAATGCATATATATTTGT
* *
4667647 AATAAAA-TGTGAGCTTATGTATTGGGCCTATGTAAACTAATGTAAATGGACTAGCACTATTGGA
66 AATAAAAGAGTGGGCTTATGTATTGGGCCTATGTAAACTAATGTAAATGGACTAGCACTATTGGA
* *
4667711 ATTGGACTTATTTTTGGGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGATATTAATG
131 AATGGACTTATTTTT-GGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAATG
4667776 TGAATTAACCTAACATGCAACTAAAATACTAATTATGCAAATGAAATTAATATGGCATGTACTAC
195 TGAATTAACCTAACATGCAACTAAAATACTAATTATGCAAATGAAATTAATATGGCATGTACTAC
*
4667841 TATTTATGAACCATATAATATACAATGTGACATACTAATTATTTAACACCTAATTAATCATGTTT
260 TATTTATGAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGTTT
*
4667906 TATATAATTTACATTTAAATAATTTTATAT-AAT-ATGTATGTATAAACTATATATATATATATA
325 TATATAATTTACATTTAAATAATTTTATATAAATAAT-T-TATATAAA-TATATATATATATATA
*
4667969 TATATATATATATAACCTATATATATATAAACTATATAAAGTAAATTACTTATATAGTTTATATA
387 TATATATATATATAACCTATATATATATAAACTATATAAAGTAAATTACTTATATAGTTTATAGA
4668034 AACACTATGCATAAACTATATAAAGTAATAAAATATATAATTTATAGAAACCC
452 AACACTATGCATAAACTATATAAAGTAATAAAATATATAATTTATAGAAACCC
* * * *
4668087 TAAACACTAACCCCTAAACCATAAACACTAATATAAATGGGCTAGGACTAATGCATATATATTTG
1 TAAACACTAA-CCCTAAACCATAAACCCTAATATAAATAGACTAGCACTAATGCATATATATTTG
* * * * *
4668152 CATTAAAAGAGTGGGCTTATGTATTGGGCATATGTAAACTAATGTAAATGGACTAGCACTAATGC
65 TAATAAAAGAGTGGGCTTATGTATTGGGCCTATGTAAACTAATGTAAATGGACTAGCACTATTGG
*
4668217 AAATCGACTTACTTTTTGGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAAT
130 AAATGGACTTA-TTTTTGGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAAT
4668282 GTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAAATGAAATTAATATGGCATGTACTA
194 GTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAAATGAAATTAATATGGCATGTACTA
* * *
4668347 CTATTTATGAACCATATAATATGCAATGTGATATACTAATTATTTAACATCTAATTAATCATGAT
259 CTATTTATGAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGTT
* * * *
4668412 TTATATAATTTACATTAAAATAATTTTATAT-AAT-ATGTATGTATAA-A-CTATATATATATAT
324 TTATATAATTTACATTTAAATAATTTTATATAAATAATTTATATA-AATATATATATATATATAT
**
4668473 -TATA-ACCTAT-A--TATATATATATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAA
388 ATATATATATATAACCTATATATATATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAA
* *
4668533 ACACTATGCATAAACTATATAAAGTAATAAAATATATAGTTTATAAAAACCC
453 ACACTATGCATAAACTATATAAAGTAATAAAATATATAATTTATAGAAACCC
*
4668585 T----A--AACCCTAAACCCTAAACCCTAATATAAATAGACTCAG-ACTAATGCATATATATTTG
1 TAAACACTAACCCTAAACCATAAACCCTAATATAAATAGACT-AGCACTAATGCATATATATTTG
* * * * * *
4668643 CAATAAAATA-T---TTTAT-AATTGGGCCTATGTAAACTAATGTAAATGGACTAGCACTAATGC
65 TAATAAAAGAGTGGGCTTATGTATTGGGCCTATGTAAACTAATGTAAATGGACTAGCACTATTGG
*
4668703 AAATTGACTTATTTTTTGGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAAT
130 AAATGGACTTA-TTTTTGGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAAT
* * *
4668768 GTGAATTAACCTAACATGCAACTAAAATATTAATTATGCAAATTAAATT-A-ATGACATGTACTA
194 GTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAAATGAAATTAATATGGCATGTACTA
* *
4668831 CTATTTGTAAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGTT
259 CTATTTATGAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGTT
* * *
4668896 TTATATAATTTACATTTATATAATTTTAT-TAAATAATTT-TATATAATATGTATGTATA-A-A-
324 TTATATAATTTACATTTAAATAATTTTATATAAATAATTTATATA-AATATATATATATATATAT
* * * * ***
4668956 ACATGTATATAT-A--TATATATATATATACTATATAAAGT-AATAAAGAATATAGTTTATAGAA
388 ATATATATATATAACCTATATATATATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAA
* ** * * *** * * * * *
4669017 ACCCTAAACTCTAAACCA-A-AAA-CCCTAAACTAGA-AACTT-T--AATCCA
453 ACACTATGC-ATAAACTATATAAAGTAATAAAATATATAATTTATAGAAACCC
* * * * * *
4669063 TAATCACTAATCCTAAACCATAAACCCTAATATAAATGGACTAACATTAATGCATATGTATTTGT
1 TAAACACTAACCCTAAACCATAAACCCTAATATAAATAGACTAGCACTAATGCATATATATTTGT
*
4669128 AATAAAAGAGTGGGCTTATGTATTGGGCCTATGTAAACAAATGTAAATGGACTAGCACTATTGGA
66 AATAAAAGAGTGGGCTTATGTATTGGGCCTATGTAAACTAATGTAAATGGACTAGCACTATTGGA
*
4669193 AATGAACTTATTTTTTGGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAATG
131 AATGGACTTA-TTTTTGGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAATG
*
4669258 TGAATTAACCTAACATGCAACTAAAATACTAATTATGCAAATGAAATTAATATGGTATGTACTAC
195 TGAATTAACCTAACATGCAACTAAAATACTAATTATGCAAATGAAATTAATATGGCATGTACTAC
*
4669323 TATTTATGAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATATTT
260 TATTTATGAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGTTT
* * *
4669388 TATATAATTTACATTTAAA-AATTTT-TTTAAATAATTTTATATAATATGTATGTATAAACTATA
325 TATATAATTTACATTTAAATAATTTTATATAAATAA-TTTATATAA-A--TATATATATA-TATA
4669451 TATATATATATATTATAACCTATATATATATAAACTATATAAAGTAAATTACTTATATAGTTTAT
385 TATATATATATA-TATAACCTATATATATATAAACTATATAAAGTAAATTACTTATATAGTTTAT
*
4669516 AGAAACACTATGCATAAACTATATAAAGTAATAAAATATATAGTTTATAGAAACCC
449 AGAAACACTATGCATAAACTATATAAAGTAATAAAATATATAATTTATAGAAACCC
* * *
4669572 TAAACCATTAATACTAACCCCTAAACCATAAACCCTAATATAAATAAATTAGGACTAATGCATAT
1 TAAA-C------ACTAA-CCCTAAACCATAAACCCTAATATAAATAGACTAGCACTAATGCATAT
* *
4669637 ATATTTGCAATAAAAGAGTGAGCTTATGTATTGGGCCTATGTAAACTAATGTAAATGGACTAGCA
58 ATATTTGTAATAAAAGAGTGGGCTTATGTATTGGGCCTATGTAAACTAATGTAAATGGACTAGCA
*
4669702 CTATTGGAAATAGACTTATTTTTGGGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGC
123 CTATTGGAAATGGACTTATTTTT-GGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGC
* *
4669767 TATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAAATAAAATT-A-ATGACA
187 TATTAATGTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAAATGAAATTAATATGGCA
*
4669830 TGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTAATTATTTAACTCCTAATTAA
252 TGTACTACTATTTATGAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAA
* *
4669895 TCATGTTTTATATAATTTACATTTATATAATTTTAT-T-AAT--TTTAT-TAAATA-AT-TTTAT
317 TCATGTTTTATATAATTTACATTTAAATAATTTTATATAAATAATTTATATAAATATATATATAT
* * * * *
4669953 ATA-ATATGTATGTATA-AACCATGTATAGTATATATAAACTATAT--A-TATATAACCTATATA
382 ATATATATATATATATATAACC---TATA-TATATATAAACTATATAAAGTAAATTACTTATATA
* * * * * * * * ** *
4670013 ---TATATAAACTATATAATGTAATAAA-GA-ATATAGTTTATAGAAACCCTAAACCAA-AAACA
443 GTTTATAGAAAC-A-CT-ATG-CATAAACTATATAAAG-TAATA-AAA---TATA-TAATTTA-T
* **
4670072 AAAAACTT
497 AGAAACCC
** * * *
4670080 TAAATCA-TAAATACT-AACCCTAAACCATAATATAAATAAACTAGCACTAATGCATATATATTT
1 TAAA-CACT-AACCCTAAACCATAAACCCTAATATAAATAGACTAGCACTAATGCATATATATTT
* *
4670143 GTAATAAAAGAGTGGACTTATGTATTGGGCCTATGAAAACTAATGTAAATGGACTAGCACTATTG
64 GTAATAAAAGAGTGGGCTTATGTATTGGGCCTATGTAAACTAATGTAAATGGACTAGCACTATTG
* *
4670208 GAAATGGACTTATTTTTGGATTTTATTATTACTTGTTCATAACAACAAAATAAATGGGCTTTTAA
129 GAAATGGACTTATTTTTGG-TTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAA
4670273 TGTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAAATGAAATTAATATGGCATGTACT
193 TGTGAATTAACCTAACATGCAACTAAAATACTAATTATGCAAATGAAATTAATATGGCATGTACT
* * *
4670338 ACTATTTATGAACCATATAATTTGTAATGTGACATACTAATTATTTAACATCTAATTAATCATGT
258 ACTATTTATGAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGT
4670403 TTTATATAATTTACATTTAAATGATATTATTAATTTTATTAAATAATTTTATATAATATGTATGT
323 TTTATATAATTTACATTTAAAT-A-ATT-TT-A---TA-TAAATAA-TTTATATAA-A--TA--T
* * * * **
4670468 ATAAACCATGTATAGTATATATAAACTATATATATATATATATATAAACTATATAAAGTAAATTA
374 ATATA-TATATATA-TATATATATA-TATA-ACCTATATATATATAAACTATATAAAGTAAATTA
* * * *
4670533 CCTATATAGTTTATAGAAACATTATGCATAAACTATATAAAGTAATAAAGTATATAGTTTATAGA
435 CTTATATAGTTTATAGAAACACTATGCATAAACTATATAAAGTAATAAAATATATAATTTATAG-
4670598 AACCTTAAACCC
499 ------AAACCC
*
4670610 TAAACTCTAAACTTTAAACCATAAACACTAAACCATAAACCCTAATATAAATAGGCTAGCACTAA
1 TAAA--C---AC--T-AA-C-----C-CTAAACCATAAACCCTAATATAAATAGACTAGCACTAA
*
4670675 TGCATATATATTTGTAATAAAAGAGTGGGCTTATGTATTGGGCCTATGTAAATTAATGTA
51 TGCATATATATTTGTAATAAAAGAGTGGGCTTATGTATTGGGCCTATGTAAACTAATGTA
4670735 TTGCCAAAAT
Statistics
Matches: 2291, Mismatches: 221, Indels: 232
0.83 0.08 0.08
Matches are distributed among these distances:
478 5 0.00
480 1 0.00
481 3 0.00
482 8 0.00
483 5 0.00
484 193 0.08
485 42 0.02
486 159 0.07
487 4 0.00
488 4 0.00
489 151 0.07
490 15 0.01
491 151 0.07
492 9 0.00
494 9 0.00
495 2 0.00
496 1 0.00
497 1 0.00
498 106 0.05
499 5 0.00
500 223 0.10
501 9 0.00
502 140 0.06
503 62 0.03
504 25 0.01
505 31 0.01
506 81 0.04
507 274 0.12
508 18 0.01
509 8 0.00
510 2 0.00
511 4 0.00
512 8 0.00
515 101 0.04
516 21 0.01
517 215 0.09
519 2 0.00
522 2 0.00
523 2 0.00
524 8 0.00
525 17 0.01
526 11 0.00
527 10 0.00
528 22 0.01
529 7 0.00
530 9 0.00
531 10 0.00
534 1 0.00
537 4 0.00
544 2 0.00
545 88 0.04
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (504 bp):
TAAACACTAACCCTAAACCATAAACCCTAATATAAATAGACTAGCACTAATGCATATATATTTGT
AATAAAAGAGTGGGCTTATGTATTGGGCCTATGTAAACTAATGTAAATGGACTAGCACTATTGGA
AATGGACTTATTTTTGGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAATGT
GAATTAACCTAACATGCAACTAAAATACTAATTATGCAAATGAAATTAATATGGCATGTACTACT
ATTTATGAACCATATAATATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGTTTT
ATATAATTTACATTTAAATAATTTTATATAAATAATTTATATAAATATATATATATATATATATA
TATATATATAACCTATATATATATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAAACA
CTATGCATAAACTATATAAAGTAATAAAATATATAATTTATAGAAACCC
Found at i:4668476 original size:20 final size:20
Alignment explanation
Indices: 4668438--4668504 Score: 91
Period size: 20 Copynumber: 3.3 Consensus size: 20
4668428 AAAATAATTT
*
4668438 TATATAATATGTATGTATAAAC
1 TATAT-ATATATAT-TATAAAC
*
4668460 TATATATATATATTATAACC
1 TATATATATATATTATAAAC
4668480 TATATATATATA-TATAAAC
1 TATATATATATATTATAAAC
4668499 TATATA
1 TATATA
4668505 AAGTAAATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
19 12 0.29
20 18 0.43
21 7 0.17
22 5 0.12
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (20 bp):
TATATATATATATTATAAAC
Found at i:4668589 original size:7 final size:7
Alignment explanation
Indices: 4668579--4668608 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
4668569 TAGTTTATAA
4668579 AAACCCT
1 AAACCCT
4668586 AAACCCT
1 AAACCCT
4668593 AAACCCT
1 AAACCCT
4668600 AAACCCT
1 AAACCCT
4668607 AA
1 AA
4668609 TATAAATAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.47, C:0.40, G:0.00, T:0.13
Consensus pattern (7 bp):
AAACCCT
Found at i:4668596 original size:49 final size:49
Alignment explanation
Indices: 4668493--4668596 Score: 120
Period size: 48 Copynumber: 2.1 Consensus size: 49
4668483 ATATATATAT
* ** * **
4668493 ATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAAACACTATGC
1 ATAAACTATATAAAGTAAATAAAATATATAGTTTATAAAAACACTAACC
*
4668542 ATAAACTATATAAAGT-AATAAAATATATAGTTTATAAAAACCCTAAACC
1 ATAAACTATATAAAGTAAATAAAATATATAGTTTATAAAAACACT-AACC
*
4668591 CTAAAC
1 ATAAAC
4668597 CCTAAACCCT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
48 23 0.50
49 23 0.50
ACGTcount: A:0.51, C:0.12, G:0.06, T:0.31
Consensus pattern (49 bp):
ATAAACTATATAAAGTAAATAAAATATATAGTTTATAAAAACACTAACC
Found at i:4669454 original size:24 final size:24
Alignment explanation
Indices: 4669425--4669482 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
4669415 TAAATAATTT
*
4669425 TATATA-ATATGTATGTATAAACTA
1 TATATATATATATAT-TATAAACTA
*
4669449 TATATATATATATATTATAACCTA
1 TATATATATATATATTATAAACTA
4669473 TATATATATA
1 TATATATATA
4669483 AACTATATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 24 0.77
25 7 0.23
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (24 bp):
TATATATATATATATTATAAACTA
Found at i:4669476 original size:16 final size:15
Alignment explanation
Indices: 4669447--4669491 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
4669437 ATGTATAAAC
*
4669447 TATATATATA-TATA
1 TATATATAAACTATA
*
4669461 TAT-TATAACCTATA
1 TATATATAAACTATA
4669475 TATATATAAACTATA
1 TATATATAAACTATA
4669490 TA
1 TA
4669492 AAGTAAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
13 4 0.15
14 10 0.38
15 12 0.46
ACGTcount: A:0.49, C:0.07, G:0.00, T:0.44
Consensus pattern (15 bp):
TATATATAAACTATA
Found at i:4669491 original size:24 final size:24
Alignment explanation
Indices: 4669440--4669493 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
4669430 AATATGTATG
*
4669440 TATAAACTATATATATATATATAT
1 TATAAACTATATATATATAAATAT
*
4669464 TATAACCTATATATATATAAACTA-
1 TATAAACTATATATATATAAA-TAT
4669488 TATAAA
1 TATAAA
4669494 GTAAATTACT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 24 0.92
25 2 0.08
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (24 bp):
TATAAACTATATATATATAAATAT
Found at i:4669609 original size:21 final size:21
Alignment explanation
Indices: 4669569--4669609 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
4669559 TTTATAGAAA
* *
4669569 CCCTAAACCATTAATACTAAC
1 CCCTAAACCATAAACACTAAC
*
4669590 CCCTAAACCATAAACCCTAA
1 CCCTAAACCATAAACACTAA
4669610 TATAAATAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.20
Consensus pattern (21 bp):
CCCTAAACCATAAACACTAAC
Found at i:4669999 original size:13 final size:13
Alignment explanation
Indices: 4669981--4670027 Score: 58
Period size: 13 Copynumber: 3.3 Consensus size: 13
4669971 CCATGTATAG
4669981 TATATATAAACTA
1 TATATATAAACTA
4669994 TATATATATAACCTATA
1 TATATATA-AA-C--TA
4670011 TATATATAAACTA
1 TATATATAAACTA
4670024 TATA
1 TATA
4670028 ATGTAATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
13 14 0.47
14 2 0.07
15 2 0.07
16 2 0.07
17 10 0.33
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (13 bp):
TATATATAAACTA
Found at i:4670001 original size:15 final size:15
Alignment explanation
Indices: 4669976--4670027 Score: 86
Period size: 15 Copynumber: 3.4 Consensus size: 15
4669966 ATAAACCATG
4669976 TATAGTATATATAAAC
1 TATA-TATATATAAAC
*
4669992 TATATATATATAACC
1 TATATATATATAAAC
4670007 TATATATATATAAAC
1 TATATATATATAAAC
4670022 TATATA
1 TATATA
4670028 ATGTAATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
15 30 0.88
16 4 0.12
ACGTcount: A:0.50, C:0.08, G:0.02, T:0.40
Consensus pattern (15 bp):
TATATATATATAAAC
Found at i:4670275 original size:500 final size:509
Alignment explanation
Indices: 4668410--4670734 Score: 2512
Period size: 500 Copynumber: 4.5 Consensus size: 509
4668400 ATTAATCATG
* * *
4668410 ATTTATATAATTTACATTAAAATAATTTTATATAATATGTATGTATAAACTATATATA-TATATT
1 ATTTAT-TAATTT-TATT-AAATAATTTTATATAATATGTATGTATAAACCATGTATAGTATA-T
* * *
4668474 ATAACCTATATATATATATATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAAACACTA
62 ATAA---A-CTATATATATATAAACTATATAAAGTAAA-TACTTATATAATGTATAGAAACAC-A
* * * *** *
4668539 TGCATAAACTATATAAAGTAATAAAATATATAGTTTATAAAAACCCTAAACC----CTA--AACC
121 T-CATAAACTATAGAAAGCAATAAAACATATAGAACATAAAAACCCTAAACCATAAATACTAACC
* * * * *
4668598 CTAAACCCTAATATAAATAGACTCAG-ACTAATGCATATATATTTGCAATAAAATA-T---TTTA
185 CTAAACCATAATATAAATAAACT-AGCACTAATGCATATATATTTGTAATAAAAGAGTGGACTTA
* * * *
4668658 T-AATTGGGCCTATGTAAACTAATGTAAATGGACTAGCACTAATGCAAATTGACTTATTTTTTGG
249 TGTATTGGGCCTATGTAAACTAATGTAAATGGACTAGCACTATTGGAAATGGACTTA-TTTTTGG
4668722 TTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAATGTGAATTAACCTAACATGC
313 TTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAATGTGAATTAACCTAACATGC
* * * * *
4668787 AACTAAAATATTAATTATGCAAATTAAATT-A-ATGACATGTACTACTATTTGTAAACCATATAA
378 AACTAAAATACTAATTATGCAAATGAAATTAATATGGCATGTACTACTATTTATGAACCATATAA
*
4668850 TATGCAATGTGACATACTAATTATTTAACACCTAATTAATCATGTTTTATATAATTTACA-TT--
443 TATGCAATGTGACATACTAATTATTTAACTCCTAATTAATCATGTTTTATATAATTTACATTTAA
4668912 T-
508 TA
*
4668913 A--TA-TAATTTTATTAAATAATTTTATATAATATGTATGTATAAAACATG--TA-TATATAT--
1 ATTTATTAATTTTATTAAATAATTTTATATAATATGTATGTATAAACCATGTATAGTATATATAA
*** * *
4668970 A-TATATATATAT--ACTATATAAAGT-AATAAAGAATATAGTTTATAGAAAC-C--C-TAAACT
66 ACTATATATATATAAACTATATAAAGTAAAT-ACTTATATAATGTATAGAAACACATCATAAACT
* * ** * ** * *
4669027 CT--AAA-CCA-AAAAC-CCTA-AAC-TAGAAACTTTAATCCATAATCACTAATCCTAAACCATA
130 ATAGAAAGCAATAAAACATATAGAACATAAAAACCCTAAACCATAA--A-T-A--CT-AACCCTA
* ** * * * *
4669085 AACCCTAATATAAATGGACTAACATTAATGCATATGTATTTGTAATAAAAGAGTGGGCTTATGTA
188 AACCATAATATAAATAAACTAGCACTAATGCATATATATTTGTAATAAAAGAGTGGACTTATGTA
* *
4669150 TTGGGCCTATGTAAACAAATGTAAATGGACTAGCACTATTGGAAATGAACTTATTTTTTGGTTTT
253 TTGGGCCTATGTAAACTAATGTAAATGGACTAGCACTATTGGAAATGGACTTA-TTTTTGGTTTT
4669215 ATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAATGTGAATTAACCTAACATGCAACT
317 ATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAATGTGAATTAACCTAACATGCAACT
*
4669280 AAAATACTAATTATGCAAATGAAATTAATATGGTATGTACTACTATTTATGAACCATATAATATG
382 AAAATACTAATTATGCAAATGAAATTAATATGGCATGTACTACTATTTATGAACCATATAATATG
* *
4669345 CAATGTGACATACTAATTATTTAACACCTAATTAATCATATTTTATATAATTTACATTTAA-A
447 CAATGTGACATACTAATTATTTAACTCCTAATTAATCATGTTTTATATAATTTACATTTAATA
* * *
4669407 A---A-T--TTTT-TTAAATAATTTTATATAATATGTATGTATAAACTATATATATATATATATT
1 ATTTATTAATTTTATTAAATAATTTTATATAATATGTATGTATAAACCATGTATA-GTATATA-T
* *
4669465 ATAACCTATATATATATAAACTATATAAAGTAAATTACTTATATAGTTTATAGAAACACTATGCA
64 A-AA-CTATATATATATAAACTATATAAAGTAAA-TACTTATATAATGTATAGAAACAC-AT-CA
* * * *** * *
4669530 TAAACTATATAAAGTAATAAAATATATAGTTTATAGAAACCCTAAACCATTAATACTAACCCCTA
124 TAAACTATAGAAAGCAATAAAACATATAGAACATAAAAACCCTAAACCATAAATACTAA-CCCTA
* * *
4669595 AACCATAAACCCTAATATAAATAAATTAGGACTAATGCATATATATTTGCAATAAAAGAGT-GAG
188 AACC----A---TAATATAAATAAACTAGCACTAATGCATATATATTTGTAATAAAAGAGTGGA-
*
4669659 CTTATGTATTGGGCCTATGTAAACTAATGTAAATGGACTAGCACTATTGGAAATAGACTTATTTT
245 CTTATGTATTGGGCCTATGTAAACTAATGTAAATGGACTAGCACTATTGGAAATGGACTTATTTT
4669724 TGGGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAATGTGAATTAACCTAAC
310 T-GGTTTTATTATTACTTATTCATAACAACAAAATAAATGGGCTATTAATGTGAATTAACCTAAC
* *
4669789 ATGCAACTAAAATACTAATTATGCAAATAAAATT-A-ATGACATGTACTACTATTTATGAACCAT
374 ATGCAACTAAAATACTAATTATGCAAATGAAATTAATATGGCATGTACTACTATTTATGAACCAT
4669852 ATAATATGCAATGTGACATACTAATTATTTAACTCCTAATTAATCATGTTTTATATAATTTACAT
439 ATAATATGCAATGTGACATACTAATTATTTAACTCCTAATTAATCATGTTTTATATAATTTACAT
4669917 TTATATA
504 TTA-ATA
4669924 ATTTTATTAATTTTATTAAATAATTTTATATAATATGTATGTATAAACCATGTATAGTATATATA
1 A-TTTATTAATTTTATTAAATAATTTTATATAATATGTATGTATAAACCATGTATAGTATATATA
* * * * ***
4669989 AACTATATATATATAACCTATATATA-TATAA-AC-TATATAATGTA-ATAAAGA-AT-ATAGTT
65 AACTATATATATATAAACTATATAAAGTA-AATACTTATATAATGTATAGAAACACATCATAAAC
** * ** *
4670048 TATAGAAA-CCCTAAACCA-A-A-AACA-AAAAACTTTAAATCATAAATACTAACCCTAAACCAT
129 TATAGAAAGCAATAAAACATATAGAACATAAAAACCCTAAACCATAAATACTAACCCTAAACCAT
4670108 AATATAAATAAACTAGCACTAATGCATATATATTTGTAATAAAAGAGTGGACTTATGTATTGGGC
194 AATATAAATAAACTAGCACTAATGCATATATATTTGTAATAAAAGAGTGGACTTATGTATTGGGC
*
4670173 CTATGAAAACTAATGTAAATGGACTAGCACTATTGGAAATGGACTTATTTTTGGATTTTATTATT
259 CTATGTAAACTAATGTAAATGGACTAGCACTATTGGAAATGGACTTATTTTTGG-TTTTATTATT
* *
4670238 ACTTGTTCATAACAACAAAATAAATGGGCTTTTAATGTGAATTAACCTAACATGCAACTAAAATA
323 ACTTATTCATAACAACAAAATAAATGGGCTATTAATGTGAATTAACCTAACATGCAACTAAAATA
* *
4670303 CTAATTATGCAAATGAAATTAATATGGCATGTACTACTATTTATGAACCATATAATTTGTAATGT
388 CTAATTATGCAAATGAAATTAATATGGCATGTACTACTATTTATGAACCATATAATATGCAATGT
*
4670368 GACATACTAATTATTTAACAT-CTAATTAATCATGTTTTATATAATTTACATTTAAATG
453 GACATACTAATTATTTAAC-TCCTAATTAATCATGTTTTATATAATTTACATTT-AATA
4670426 ATATTATTAATTTTATTAAATAATTTTATATAATATGTATGTATAAACCATGTATAGTATATATA
1 AT-TTATTAATTTTATTAAATAATTTTATATAATATGTATGTATAAACCATGTATAGTATATATA
* * * *
4670491 AACTATATATATATATATATATAAACTATATAAAGTAAATTACCTATATAGTTTATAGAAACATT
65 AAC--------TATATATATATAAACTATATAAAGTAAA-TACTTATATAATGTATAGAAACA-C
* * * *
4670556 ATGCATAAACTATATAAAGTAATAAAGTATATAGTTTATAGAAACCTTAAACCCTAAACTCTAAA
120 AT-CATAAACTATAGAAAGCAAT-AA--A-ACA---TATAG-AA-CAT-AA----AAAC-C----
* * * **
4670621 CTTTAAACCATAAACACTAAACCATAAACCCTAATATAAATAGGCTAGCACTAATGCATATATAT
165 C--TAAACCATAAATACT-AACCCTAAACCATAATATAAATAAACTAGCACTAATGCATATATAT
* *
4670686 TTGTAATAAAAGAGTGGGCTTATGTATTGGGCCTATGTAAATTAATGTA
227 TTGTAATAAAAGAGTGGACTTATGTATTGGGCCTATGTAAACTAATGTA
4670735 TTGCCAAAAT
Statistics
Matches: 1552, Mismatches: 145, Indels: 208
0.81 0.08 0.11
Matches are distributed among these distances:
471 11 0.01
473 2 0.00
474 4 0.00
475 1 0.00
476 3 0.00
478 8 0.01
479 2 0.00
483 3 0.00
484 70 0.05
485 13 0.01
487 11 0.01
488 4 0.00
489 151 0.10
490 35 0.02
491 91 0.06
492 4 0.00
493 2 0.00
494 10 0.01
495 7 0.00
497 32 0.02
498 4 0.00
499 8 0.01
500 213 0.14
501 6 0.00
502 170 0.11
503 24 0.02
504 2 0.00
507 9 0.01
508 21 0.01
509 10 0.01
510 34 0.02
511 6 0.00
512 9 0.01
513 24 0.02
514 8 0.01
515 94 0.06
516 25 0.02
517 202 0.13
518 19 0.01
519 3 0.00
520 4 0.00
521 25 0.02
522 4 0.00
523 3 0.00
524 10 0.01
525 39 0.03
527 1 0.00
528 1 0.00
530 2 0.00
531 1 0.00
533 2 0.00
537 4 0.00
544 13 0.01
545 88 0.06
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36
Consensus pattern (509 bp):
ATTTATTAATTTTATTAAATAATTTTATATAATATGTATGTATAAACCATGTATAGTATATATAA
ACTATATATATATAAACTATATAAAGTAAATACTTATATAATGTATAGAAACACATCATAAACTA
TAGAAAGCAATAAAACATATAGAACATAAAAACCCTAAACCATAAATACTAACCCTAAACCATAA
TATAAATAAACTAGCACTAATGCATATATATTTGTAATAAAAGAGTGGACTTATGTATTGGGCCT
ATGTAAACTAATGTAAATGGACTAGCACTATTGGAAATGGACTTATTTTTGGTTTTATTATTACT
TATTCATAACAACAAAATAAATGGGCTATTAATGTGAATTAACCTAACATGCAACTAAAATACTA
ATTATGCAAATGAAATTAATATGGCATGTACTACTATTTATGAACCATATAATATGCAATGTGAC
ATACTAATTATTTAACTCCTAATTAATCATGTTTTATATAATTTACATTTAATA
Found at i:4670513 original size:23 final size:24
Alignment explanation
Indices: 4670478--4670522 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
4670468 ATAAACCATG
4670478 TATAGTATATATAAACTATATATA
1 TATAGTATATATAAACTATATATA
4670502 TATA-TATATATAAACTATATA
1 TATAGTATATATAAACTATATA
4670523 AAGTAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.42
Consensus pattern (24 bp):
TATAGTATATATAAACTATATATA
Found at i:4670614 original size:49 final size:49
Alignment explanation
Indices: 4670511--4670615 Score: 131
Period size: 48 Copynumber: 2.1 Consensus size: 49
4670501 ATATATATAT
* * **
4670511 ATAAACTATATAAAGTAAATTACCTATATAGTTTATAGAAACATTATGC
1 ATAAACTATATAAAGTAAATAAACTATATAGTTTATAGAAACATTAACC
* *
4670560 ATAAACTATATAAAGT-AATAAAGTATATAGTTTATAGAAACCTTAAACC
1 ATAAACTATATAAAGTAAATAAACTATATAGTTTATAGAAACATT-AACC
*
4670609 CTAAACT
1 ATAAACT
4670616 CTAAACTTTA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
48 24 0.50
49 24 0.50
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (49 bp):
ATAAACTATATAAAGTAAATAAACTATATAGTTTATAGAAACATTAACC
Found at i:4670620 original size:14 final size:14
Alignment explanation
Indices: 4670597--4670654 Score: 64
Period size: 14 Copynumber: 4.1 Consensus size: 14
4670587 TAGTTTATAG
*
4670597 AAACCTTAAACCCT
1 AAACCATAAACCCT
**
4670611 AAACTC-TAAACTTT
1 AAAC-CATAAACCCT
*
4670625 AAACCATAAACACT
1 AAACCATAAACCCT
4670639 AAACCATAAACCCT
1 AAACCATAAACCCT
4670653 AA
1 AA
4670655 TATAAATAGG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
13 1 0.03
14 35 0.95
15 1 0.03
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (14 bp):
AAACCATAAACCCT
Found at i:4670626 original size:21 final size:21
Alignment explanation
Indices: 4670597--4670654 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
4670587 TAGTTTATAG
*
4670597 AAACCTTAAACCCTAAACTCT
1 AAACCTTAAACCCTAAACACT
* *
4670618 AAACTTTAAACCATAAACACT
1 AAACCTTAAACCCTAAACACT
*
4670639 AAACCATAAACCCTAA
1 AAACCTTAAACCCTAA
4670655 TATAAATAGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (21 bp):
AAACCTTAAACCCTAAACACT
Found at i:4670839 original size:14 final size:14
Alignment explanation
Indices: 4670820--4670866 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
4670810 ATTTTTTCTT
4670820 TATATAAATTAAAC
1 TATATAAATTAAAC
4670834 TATAT-AATT----
1 TATATAAATTAAAC
4670843 TATATAAATTAAAC
1 TATATAAATTAAAC
*
4670857 TATATTAATT
1 TATATAAATT
4670867 TTTCTTTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
13 4 0.15
14 14 0.52
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATAAATTAAAC
Found at i:4670844 original size:23 final size:24
Alignment explanation
Indices: 4670818--4670867 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
4670808 TTATTTTTTC
4670818 TTTATATAAATTAAACTATA-TAA
1 TTTATATAAATTAAACTATATTAA
4670841 TTTATATAAATTAAACTATATTAA
1 TTTATATAAATTAAACTATATTAA
4670865 TTT
1 TTT
4670868 TTCTTTGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 20 0.77
24 6 0.23
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (24 bp):
TTTATATAAATTAAACTATATTAA
Found at i:4673253 original size:64 final size:64
Alignment explanation
Indices: 4673139--4673276 Score: 163
Period size: 64 Copynumber: 2.1 Consensus size: 64
4673129 GTGCACCAAG
* * * *
4673139 TGTGCATCGATGCATAAAATGCATTCGATGTTTGAAAATAGCCTGAGTGCATCGGTGCATTGCT
1 TGTGCATCGATGCATAAAATGCATTCGATGTTTGAAAATAGCATGAGTGCATCGATGCATGGAT
* ** *
4673203 TGTGCATCGATGCATGAAATGCATTCGATGTTT-AATTTATTCAATG-GTGCATCGATGCATGGA
1 TGTGCATCGATGCATAAAATGCATTCGATGTTTGAAAATA-GC-ATGAGTGCATCGATGCATGGA
4673266 T
64 T
4673267 TGATGCATCG
1 TG-TGCATCG
4673277 GTGGATGCCT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
63 4 0.06
64 50 0.79
65 9 0.14
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (64 bp):
TGTGCATCGATGCATAAAATGCATTCGATGTTTGAAAATAGCATGAGTGCATCGATGCATGGAT
Found at i:4679851 original size:22 final size:21
Alignment explanation
Indices: 4679809--4679848 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
4679799 AAGACTATTT
4679809 TCATTTTTTAATTTTGAAATA
1 TCATTTTTTAATTTTGAAATA
4679830 TCATTTTTGT-ATTTTGAAA
1 TCATTTTT-TAATTTTGAAA
4679849 ATAAAGTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.57
Consensus pattern (21 bp):
TCATTTTTTAATTTTGAAATA
Found at i:4681625 original size:64 final size:63
Alignment explanation
Indices: 4681557--4681735 Score: 216
Period size: 64 Copynumber: 2.8 Consensus size: 63
4681547 TAAAACACTT
* * * **
4681557 AGTGCATCGGTGCACCAAGTGTGCATCGATGCATAAAATGCATTCGATGTTTGAA-AATAGCCTG
1 AGTGCATCGGTGCA-TAAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAATAA-AACCCA
*** *
4681621 AGTGCATCGGTGCATTTCTTGTGCATCGATGCATGAAATGCATTCGATGTTTTAATAAAACCCA
1 AGTGCATCGGTGCA-TAAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAATAAAACCCA
* *
4681685 AGTGCATCGATGCATAGAGAGTGCATCGATGCATGAAATGCATTCGATGTT
1 AGTGCATCGGTGCATA-AGTGTGCATCGATGCATGAAATGCATTCGATGTT
4681736 CAATTTATTC
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
63 1 0.01
64 95 0.97
65 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (63 bp):
AGTGCATCGGTGCATAAGTGTGCATCGATGCATGAAATGCATTCGATGTTTGAATAAAACCCA
Found at i:4682579 original size:20 final size:21
Alignment explanation
Indices: 4682550--4682593 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
4682540 ACCATATTAC
4682550 CATCATTTCAT-TT-CCACAA
1 CATCATTTCATCTTGCCACAA
4682569 CATCTATTTCATCTTGCCACAA
1 CATC-ATTTCATCTTGCCACAA
4682591 CAT
1 CAT
4682594 TCTCATCTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.18
20 7 0.32
21 2 0.09
22 9 0.41
ACGTcount: A:0.30, C:0.32, G:0.02, T:0.36
Consensus pattern (21 bp):
CATCATTTCATCTTGCCACAA
Found at i:4683131 original size:3 final size:3
Alignment explanation
Indices: 4683123--4683206 Score: 61
Period size: 3 Copynumber: 27.7 Consensus size: 3
4683113 TAAAAAGAAT
*
4683123 TAA TAA TAA TAA -AA TAA TAA TAA TAA -ATA TAAA TAAA TAAA TAT TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A T-AA T-AA T-AA TAA TAA
*
4683170 T-A TAA T-A TAA T-A TAA TATA TAA TAA AAA CTAA TAA TA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA -TAA TAA TA
4683207 TGTTTTCAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
2 9 0.13
3 43 0.63
4 15 0.22
5 1 0.01
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:4683148 original size:20 final size:20
Alignment explanation
Indices: 4683123--4683206 Score: 70
Period size: 20 Copynumber: 4.2 Consensus size: 20
4683113 TAAAAAGAAT
4683123 TAATAATAATAAAATAATAA
1 TAATAATAATAAAATAATAA
4683143 TAAT-A-AATATAAATAAATAAA
1 TAATAATAATA-AAAT-AAT-AA
* *
4683164 TATTAAT-ATAATATAAT-A
1 TAATAATAATAAAATAATAA
*
4683182 TAATATATAATAAAA-ACTAA
1 TAATA-ATAATAAAATAATAA
4683202 TAATA
1 TAATA
4683207 TGTTTTCAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
18 9 0.18
19 9 0.18
20 21 0.41
21 8 0.16
22 4 0.08
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.33
Consensus pattern (20 bp):
TAATAATAATAAAATAATAA
Done.