Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007960.1 Hibiscus syriacus cultivar Beakdansim tig00110387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7905731
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 31 of 39
Found at i:5855862 original size:15 final size:15
Alignment explanation
Indices: 5855842--5855875 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
5855832 CTATATATTT
5855842 TATATAGTTTATACA
1 TATATAGTTTATACA
5855857 TATATAGTTTATACA
1 TATATAGTTTATACA
5855872 TATA
1 TATA
5855876 CTATATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (15 bp):
TATATAGTTTATACA
Found at i:5855884 original size:15 final size:15
Alignment explanation
Indices: 5855842--5855890 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
5855832 CTATATATTT
*
5855842 TATATAGTTTATACA
1 TATATAGTATATACA
*
5855857 TATATAGTTTATACA
1 TATATAGTATATACA
*
5855872 TATACTA-TATATATA
1 TATA-TAGTATATACA
5855887 TATA
1 TATA
5855891 AATAATATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
15 29 0.94
16 2 0.06
ACGTcount: A:0.43, C:0.06, G:0.04, T:0.47
Consensus pattern (15 bp):
TATATAGTATATACA
Found at i:5855928 original size:84 final size:80
Alignment explanation
Indices: 5855773--5855940 Score: 224
Period size: 75 Copynumber: 2.2 Consensus size: 80
5855763 TACTATAAGT
*
5855773 TACATATATAGTTATACATACATATATATACTATATTAATATAAATTATAATATATAAACTATAT
1 TACATATATAGTTATACATACATATATATACTATATAAATATAAATTATAATATATAAACTATAT
5855838 ATTTTATATAGTTTA
66 ATTTTATATAGTTTA
* * *
5855853 TACATATATAGTT-T--ATACATATACTATA-TATAT--ATATAAATAATATTTTATAAACTATA
1 TACATATATAGTTATACATACATATA-TATACTATATAAATATAAATTATAATATATAAACTATA
*
5855912 TACTTTT-TATTGTTTA
65 TA-TTTTATATAGTTTA
5855928 TACATATATAGTT
1 TACATATATAGTT
5855941 TATATGCATA
Statistics
Matches: 82, Mismatches: 4, Indels: 9
0.86 0.04 0.09
Matches are distributed among these distances:
75 46 0.56
76 4 0.05
77 14 0.17
78 4 0.05
79 1 0.01
80 13 0.16
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (80 bp):
TACATATATAGTTATACATACATATATATACTATATAAATATAAATTATAATATATAAACTATAT
ATTTTATATAGTTTA
Found at i:5855958 original size:75 final size:75
Alignment explanation
Indices: 5855800--5855963 Score: 217
Period size: 75 Copynumber: 2.2 Consensus size: 75
5855790 ATACATATAT
*
5855800 ATACTATAT-TA-ATATAAATTATAATATATAAACTATATATTTTATATAGTTTATACATATATA
1 ATACTATATATATATATAAATAATAATATATAAACTATATATTTTATATAGTTTATACATATATA
*
5855863 GTTTATACAT
66 GTTTATACAC
* * *
5855873 ATACTATATATATATATAAATAATATTTTATAAACTATATACTTTT-TATTGTTTATACATATAT
1 ATACTATATATATATATAAATAATAATATATAAACTATATA-TTTTATATAGTTTATACATATAT
**
5855937 AGTTTATATGC
65 AGTTTATACAC
* *
5855948 ATAGTTTATATATATA
1 ATACTATATATATATA
5855964 GTTCACATAA
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
73 9 0.11
74 2 0.03
75 64 0.81
76 4 0.05
ACGTcount: A:0.43, C:0.05, G:0.04, T:0.48
Consensus pattern (75 bp):
ATACTATATATATATATAAATAATAATATATAAACTATATATTTTATATAGTTTATACATATATA
GTTTATACAC
Found at i:5856028 original size:18 final size:17
Alignment explanation
Indices: 5855970--5856042 Score: 71
Period size: 18 Copynumber: 4.3 Consensus size: 17
5855960 TATAGTTCAC
*
5855970 ATAAACATAATTTATAT
1 ATAAATATAATTTATAT
*
5855987 AT--ATATAACTTATA-
1 ATAAATATAATTTATAT
*
5856001 ATAATTATATAGTTTATAAT
1 ATAA--ATATAATTTAT-AT
5856021 ATAAATATAATTTATAT
1 ATAAATATAATTTATAT
5856038 ATAAA
1 ATAAA
5856043 CTTATATTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
14 2 0.04
15 10 0.22
17 9 0.20
18 19 0.42
19 1 0.02
20 4 0.09
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (17 bp):
ATAAATATAATTTATAT
Found at i:5856067 original size:18 final size:19
Alignment explanation
Indices: 5855981--5856067 Score: 59
Period size: 18 Copynumber: 5.1 Consensus size: 19
5855971 TAAACATAAT
5855981 TTATATATATATAACTTATA
1 TTATATATATAT-ACTTATA
* *
5856001 ATA-AT-TATATAGTT-TA
1 TTATATATATATACTTATA
*
5856017 -TA-ATATAAATA--TA-A
1 TTATATATATATACTTATA
*
5856031 TT-TATATATAAACTTATA
1 TTATATATATATACTTATA
5856049 TTATATATATATA-TTATA
1 TTATATATATATACTTATA
5856067 T
1 T
5856068 ATTTTTTCAA
Statistics
Matches: 53, Mismatches: 6, Indels: 18
0.69 0.08 0.23
Matches are distributed among these distances:
14 2 0.04
15 12 0.23
16 7 0.13
17 5 0.09
18 14 0.26
19 11 0.21
20 2 0.04
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.49
Consensus pattern (19 bp):
TTATATATATATACTTATA
Found at i:5859944 original size:18 final size:20
Alignment explanation
Indices: 5859897--5859942 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
5859887 GAAGATCTTG
5859897 GAGAGAGAAAGTGGAAGAAA
1 GAGAGAGAAAGTGGAAGAAA
5859917 GAGAGAGAAAGTGGAAGAAA
1 GAGAGAGAAAGTGGAAGAAA
5859937 GAGAGA
1 GAGAGA
5859943 AAAACACTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.54, C:0.00, G:0.41, T:0.04
Consensus pattern (20 bp):
GAGAGAGAAAGTGGAAGAAA
Found at i:5865736 original size:9 final size:9
Alignment explanation
Indices: 5865722--5865758 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
5865712 ATTCTGACTC
5865722 TGATACTGA
1 TGATACTGA
5865731 TGATACTGA
1 TGATACTGA
5865740 TGATACTGA
1 TGATACTGA
5865749 TGATACTGA
1 TGATACTGA
5865758 T
1 T
5865759 ACTTGTATTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.35
Consensus pattern (9 bp):
TGATACTGA
Found at i:5871428 original size:2 final size:2
Alignment explanation
Indices: 5871421--5871511 Score: 119
Period size: 2 Copynumber: 44.5 Consensus size: 2
5871411 TTGTTGGAAC
5871421 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
5871463 TA TA TT TT TA CTG TA CTG TT TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA -TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5871507 TA TA T
1 TA TA T
5871512 TAATTGTATT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
2 78 0.98
3 2 0.03
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (2 bp):
TA
Found at i:5883017 original size:11 final size:11
Alignment explanation
Indices: 5883001--5883027 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
5882991 TTTGCTTGAA
5883001 AAAAAGAAAAG
1 AAAAAGAAAAG
5883012 AAAAAGAAAAG
1 AAAAAGAAAAG
5883023 AAAAA
1 AAAAA
5883028 AAGAAGAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:5883023 original size:16 final size:16
Alignment explanation
Indices: 5883002--5883035 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
5882992 TTGCTTGAAA
5883002 AAAAGAAAAGAAA-AAG
1 AAAAGAAAA-AAAGAAG
5883018 AAAAGAAAAAAAGAAG
1 AAAAGAAAAAAAGAAG
5883034 AA
1 AA
5883036 GAAATATATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.18
16 14 0.82
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAAAGAAG
Found at i:5883029 original size:19 final size:19
Alignment explanation
Indices: 5882998--5883039 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
5882988 TATTTTGCTT
5882998 GAAAAAAAGAAAAGAAAAA
1 GAAAAAAAGAAAAGAAAAA
*
5883017 GAAAAGAAA-AAAAGAAGAA
1 GAAAA-AAAGAAAAGAAAAA
5883036 GAAA
1 GAAA
5883040 TATATGAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (19 bp):
GAAAAAAAGAAAAGAAAAA
Found at i:5884312 original size:115 final size:115
Alignment explanation
Indices: 5884163--5884407 Score: 377
Period size: 115 Copynumber: 2.1 Consensus size: 115
5884153 TCTTAAAGAC
*
5884163 AAGTGGAACAAGTCTGCCCCCATTCAGTGGATCAAACTCCTGT-AAGATCTGATATTCCCTTCAG
1 AAGTGGAACAAGTCTGCCCCCATTCAGTGAATCAAACTCCT-TCAAGATCTGATATTCCCTTCAG
*
5884227 AGTAAACAGAACAGGTCTCTCTTTCCCAAGATTTGATATTCCCTTCAGAGT
65 AGTAAACAGAACAGGTCTCTCTTTCCCAAGATCTGATATTCCCTTCAGAGT
** *
5884278 AAGTGGAACAAGTCTGCCCTGATTCAAG-GAATCAAACTTCTTCAAGATCTGATATTCCCTTCAG
1 AAGTGGAACAAGTCTGCCCCCATTC-AGTGAATCAAACTCCTTCAAGATCTGATATTCCCTTCAG
* *
5884342 AGTAAGCGGAACAGGTCTCTCTTTCCCAAGATCTGATATTCCCTTCAGAGT
65 AGTAAACAGAACAGGTCTCTCTTTCCCAAGATCTGATATTCCCTTCAGAGT
* *
5884393 AAGCGGAACATGTCT
1 AAGTGGAACAAGTCT
5884408 CTCTTTCCCA
Statistics
Matches: 119, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
114 1 0.01
115 116 0.97
116 2 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (115 bp):
AAGTGGAACAAGTCTGCCCCCATTCAGTGAATCAAACTCCTTCAAGATCTGATATTCCCTTCAGA
GTAAACAGAACAGGTCTCTCTTTCCCAAGATCTGATATTCCCTTCAGAGT
Found at i:5884450 original size:49 final size:48
Alignment explanation
Indices: 5884320--5884456 Score: 220
Period size: 48 Copynumber: 2.8 Consensus size: 48
5884310 CAAACTTCTT
*
5884320 CAAGATCTGATATTCCCTTCAGAGTAAGCGGAACAGGTCTCTCTTTCC
1 CAAGATCTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTTCC
*
5884368 CAAGATCTGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTCC
1 CAAGATCTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTTCC
* * *
5884416 CAAGATTTTGATATTTCCTTCAGAGTAAGTGGAACAAGTCT
1 CAAGA-TCTGATATTCCCTTCAGAGTAAGCGGAACAAGTCT
5884457 GCCCTGATTC
Statistics
Matches: 83, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
48 52 0.63
49 31 0.37
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.31
Consensus pattern (48 bp):
CAAGATCTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTTCC
Found at i:5884555 original size:48 final size:48
Alignment explanation
Indices: 5884484--5884619 Score: 227
Period size: 48 Copynumber: 2.8 Consensus size: 48
5884474 CAAACTTCTT
* * *
5884484 CAAGATTTGATATTCTCTTCAGAGTAAGCGGAACAAGTCTCTTTTTCC
1 CAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTCTCTTTCC
* *
5884532 CAAGATCTGATATTCCCTTCAGAGTAAGTGGAACATGTCTCTCTTTCC
1 CAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTCTCTTTCC
5884580 CAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
1 CAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
5884620 GCCCTGATTC
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 81 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (48 bp):
CAAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTCTCTTTCC
Found at i:5884673 original size:163 final size:163
Alignment explanation
Indices: 5884206--5884897 Score: 1145
Period size: 163 Copynumber: 4.2 Consensus size: 163
5884196 AAACTCCTGT
* * *
5884206 AAGATCTGATATTCCCTTCAGAGTAAACAGAACAGGTCTCTCTTTCCCAAGATTTGATATTCCCT
1 AAGATCTGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTCCCAAGATTTGATATTCCCT
5884271 TCAGAGTAAGTGGAACAAGTCTGCCCTGATTCAAGGAATCAAACTTCTTCAAGATCTGATATTCC
66 TCAGAGTAAGTGGAACAAGTCTGCCCTGATTCAAGGAATCAAACTTCTTCAAGATCTGATATTCC
* *
5884336 CTTCAGAGTAAGCGGAACAGGTCTCTCTTTCCC
131 CTTCAGAGTAAGCGGAACAAGTCTCTTTTTCCC
*
5884369 AAGATCTGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTCCCAAGATTTTGATATTTCC
1 AAGATCTGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTCCCAAGA-TTTGATATTCCC
* *
5884434 TTCAGAGTAAGTGGAACAAGTCTGCCCTGATTCAATGAATCAAACTTCTTCAAGATTTGATATTC
65 TTCAGAGTAAGTGGAACAAGTCTGCCCTGATTCAAGGAATCAAACTTCTTCAAGATCTGATATTC
*
5884499 TCTTCAGAGTAAGCGGAACAAGTCTCTTTTTCCC
130 CCTTCAGAGTAAGCGGAACAAGTCTCTTTTTCCC
*
5884533 AAGATCTGATATTCCCTTCAGAGTAAGTGGAACATGTCTCTCTTTCCCAAGATTTGATATTCCCT
1 AAGATCTGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTCCCAAGATTTGATATTCCCT
5884598 TCAGAGTAAGTGGAACAAGTCTGCCCTGATTCAAGGAATCAAACTTCTTCAAGATCTGATATTCC
66 TCAGAGTAAGTGGAACAAGTCTGCCCTGATTCAAGGAATCAAACTTCTTCAAGATCTGATATTCC
*
5884663 CTTTAGAGTAAGCGGAACAAGTCTCTTTTTCCC
131 CTTCAGAGTAAGCGGAACAAGTCTCTTTTTCCC
* * *
5884696 AAGATCTAATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTCCCAAGTTTTGATATTTCCT
1 AAGATCTGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTCCCAAGATTTGATATTCCCT
* *
5884761 TCAGAGTAAGTGGAACAAGTCTGCCCCGATTCAATGG-ATCAAACTCCTTC-AGATCTGATATTC
66 TCAGAGTAAGTGGAACAAGTCTGCCCTGATTCAA-GGAATCAAACTTCTTCAAGATCTGATATTC
* **
5884824 CCTTCAGAGTAAGCGGAACATGTCTCTTCTTTTTC
130 CCTTCAGAGTAAGCGGAACAAGTCTCTT-TTTCCC
* * *
5884859 AAGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCT
1 AAGATCTGATATTCCCTTCAGAGTAAGCGGAACATGTCT
5884898 GCCTCAATTC
Statistics
Matches: 497, Mismatches: 29, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
162 39 0.08
163 300 0.60
164 158 0.32
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (163 bp):
AAGATCTGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTCCCAAGATTTGATATTCCCT
TCAGAGTAAGTGGAACAAGTCTGCCCTGATTCAAGGAATCAAACTTCTTCAAGATCTGATATTCC
CTTCAGAGTAAGCGGAACAAGTCTCTTTTTCCC
Found at i:5884719 original size:48 final size:48
Alignment explanation
Indices: 5884647--5884782 Score: 200
Period size: 48 Copynumber: 2.8 Consensus size: 48
5884637 CAAACTTCTT
* *
5884647 CAAGATCTGATATTCCCTTTAGAGTAAGCGGAACAAGTCTCTTTTTCC
1 CAAGATCTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTTCC
* *
5884695 CAAGATCTAATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTCC
1 CAAGATCTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTTCC
* * * *
5884743 CAAGTTTTGATATTTCCTTCAGAGTAAGTGGAACAAGTCT
1 CAAGATCTGATATTCCCTTCAGAGTAAGCGGAACAAGTCT
5884783 GCCCCGATTC
Statistics
Matches: 78, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (48 bp):
CAAGATCTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCTCTTTCC
Found at i:5884898 original size:115 final size:114
Alignment explanation
Indices: 5884697--5884909 Score: 354
Period size: 115 Copynumber: 1.9 Consensus size: 114
5884687 CTTTTTCCCA
* *
5884697 AGATCTAATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTCCCAAGTTTTGATATTTCCTT
1 AGATCTAATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTCCCAAGATTTGATATTCCCTT
*
5884762 CAGAGTAAGTGGAACAAGTCTGCCCCGATTCAATGGATCAAACTCCTTC
66 CAGAGTAAGTGGAACAAGTCTGCCCCAATTCAATGGATCAAACTCCTTC
* **
5884811 AGATCTGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTTCTTTTTCAAGATTTGATATTCCCT
1 AGATCTAATATTCCCTTCAGAGTAAGCGGAACATGTCTC-TCTTTCCCAAGATTTGATATTCCCT
*
5884876 TCAGAGTAAGTGGAACAAGTCTGCCTCAATTCAA
65 TCAGAGTAAGTGGAACAAGTCTGCCCCAATTCAA
5884910 AATTCCCTTA
Statistics
Matches: 91, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
114 38 0.42
115 53 0.58
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (114 bp):
AGATCTAATATTCCCTTCAGAGTAAGCGGAACATGTCTCTCTTTCCCAAGATTTGATATTCCCTT
CAGAGTAAGTGGAACAAGTCTGCCCCAATTCAATGGATCAAACTCCTTC
Found at i:5884909 original size:49 final size:49
Alignment explanation
Indices: 5884811--5884909 Score: 128
Period size: 49 Copynumber: 2.0 Consensus size: 49
5884801 AAACTCCTTC
* * **
5884811 AGATCTGATATTCCCTTCAGAGTAAGCGGAACATGTCTCTTCTTTTTCA
1 AGATCTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCCTCTAATTCA
* *
5884860 AGATTTGATATTCCCTTCAGAGTAAGTGGAACAAGTCTGCCTC-AATTCA
1 AGATCTGATATTCCCTTCAGAGTAAGCGGAACAAGTCT-CCTCTAATTCA
5884909 A
1 A
5884910 AATTCCCTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 40 0.93
50 3 0.07
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (49 bp):
AGATCTGATATTCCCTTCAGAGTAAGCGGAACAAGTCTCCTCTAATTCA
Found at i:5885193 original size:13 final size:12
Alignment explanation
Indices: 5885159--5885199 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
5885149 CGTTTTTTCG
5885159 TTATTATTTATA
1 TTATTATTTATA
5885171 TTATTATTTATAA
1 TTATTATTTAT-A
5885184 TTA-TATTT-TA
1 TTATTATTTATA
5885194 TT-TTAT
1 TTATTAT
5885200 AGATTTACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 6 0.22
11 1 0.04
12 16 0.59
13 4 0.15
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTATTATTTATA
Found at i:5886935 original size:2 final size:2
Alignment explanation
Indices: 5886928--5886973 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
5886918 ATGGTTTTAC
5886928 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5886970 AT AT
1 AT AT
5886974 GTAGTAAATA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:5887101 original size:2 final size:2
Alignment explanation
Indices: 5887094--5887173 Score: 81
Period size: 2 Copynumber: 39.5 Consensus size: 2
5887084 TTGTTGGAAC
* * * * * *
5887094 TA TA TA TA TA TA TA TA TT TA -A TA TA TA TT TT TA CTG TA CTG TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA -TA TA
5887137 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5887174 CAATTAATTG
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
1 1 0.02
2 63 0.95
3 2 0.03
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (2 bp):
TA
Found at i:5890380 original size:28 final size:29
Alignment explanation
Indices: 5890342--5890434 Score: 82
Period size: 30 Copynumber: 3.2 Consensus size: 29
5890332 CACATTCGAA
*
5890342 AATTACAAAAA-A-CACCTTTATTAAAAAC
1 AATTACAAAAATATCACCATT-TTAAAAAC
* *
5890370 AATTACCAAAATATCACCATTTTAAAAAT
1 AATTACAAAAATATCACCATTTTAAAAAC
* * * * *
5890399 AATTCCCGAAAATGTCATCATTTTAAAAAT
1 AATT-ACAAAAATATCACCATTTTAAAAAC
5890429 AATTAC
1 AATTAC
5890435 CAGAATGTCA
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
28 10 0.19
29 13 0.24
30 31 0.57
ACGTcount: A:0.51, C:0.17, G:0.02, T:0.30
Consensus pattern (29 bp):
AATTACAAAAATATCACCATTTTAAAAAC
Found at i:5890486 original size:57 final size:58
Alignment explanation
Indices: 5890362--5890502 Score: 171
Period size: 57 Copynumber: 2.4 Consensus size: 58
5890352 AACACCTTTA
* * *
5890362 TTAAAAACAATTACCAAAATATCACCAT-TTTAAAAATAATTCCCGAAAATGTCATCATT
1 TTAAAAATAATTACCAAAATGTCA-C-TGTTTAAAAATAATTCCCGAAAATGTCACCATT
* *
5890421 TTAAAAATAATTACCAGAATGTCACTGTTTAAAAA-AATTTCCC-AAAATGTCACCGTT
1 TTAAAAATAATTACCAAAATGTCACTGTTTAAAAATAA-TTCCCGAAAATGTCACCATT
* *
5890478 TTCAAAATAATTCCCAAAATGTCAC
1 TTAAAAATAATTACCAAAATGTCAC
5890503 CGGGTCGGGT
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
57 37 0.51
58 14 0.19
59 21 0.29
ACGTcount: A:0.45, C:0.19, G:0.06, T:0.30
Consensus pattern (58 bp):
TTAAAAATAATTACCAAAATGTCACTGTTTAAAAATAATTCCCGAAAATGTCACCATT
Found at i:5890504 original size:29 final size:29
Alignment explanation
Indices: 5890362--5890504 Score: 164
Period size: 29 Copynumber: 4.9 Consensus size: 29
5890352 AACACCTTTA
* * * *
5890362 TTAAAAACAATTACCAAAATATCACCATT
1 TTAAAAATAATTCCCAAAATGTCACCGTT
* *
5890391 TTAAAAATAATTCCCGAAAATGTCATCATT
1 TTAAAAATAATTCCC-AAAATGTCACCGTT
* * *
5890421 TTAAAAATAATTACCAGAATGTCACTG-T
1 TTAAAAATAATTCCCAAAATGTCACCGTT
5890449 TTAAAAA-AATTTCCCAAAATGTCACCGTT
1 TTAAAAATAA-TTCCCAAAATGTCACCGTT
*
5890478 TTCAAAATAATTCCCAAAATGTCACCG
1 TTAAAAATAATTCCCAAAATGTCACCG
5890505 GGTCGGGTCG
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
27 2 0.02
28 22 0.23
29 45 0.46
30 28 0.29
ACGTcount: A:0.44, C:0.20, G:0.06, T:0.30
Consensus pattern (29 bp):
TTAAAAATAATTCCCAAAATGTCACCGTT
Found at i:5890523 original size:17 final size:17
Alignment explanation
Indices: 5890498--5890530 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
5890488 TTCCCAAAAT
*
5890498 GTCACCGGGTCGGGTCG
1 GTCAACGGGTCGGGTCG
5890515 GTCAACGGGTCGGGTC
1 GTCAACGGGTCGGGTC
5890531 AGACCGGTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.27, G:0.45, T:0.18
Consensus pattern (17 bp):
GTCAACGGGTCGGGTCG
Found at i:5896022 original size:18 final size:18
Alignment explanation
Indices: 5895999--5896034 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
5895989 CGACCTCGTC
5895999 CATGGCTAGTTCGACGTA
1 CATGGCTAGTTCGACGTA
5896017 CATGGCTAGTTCGACGTA
1 CATGGCTAGTTCGACGTA
5896035 TACGTCTAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (18 bp):
CATGGCTAGTTCGACGTA
Found at i:5897956 original size:30 final size:29
Alignment explanation
Indices: 5897916--5898092 Score: 137
Period size: 29 Copynumber: 6.1 Consensus size: 29
5897906 CACATTCGAA
*
5897916 AATTA-CAAAATATCACTTTTATTAAAAAT
1 AATTACCAAAATGTCACTTTT-TTAAAAAT
* ** * *
5897945 AATTACCAAAATATCACCGTTTTACAATT
1 AATTACCAAAATGTCACTTTTTTAAAAAT
* *
5897974 AATTCCCAAAATGTCATCATTTTT-AAAAT
1 AATTACCAAAATGTCA-CTTTTTTAAAAAT
* *
5898003 AATTACCATAATGTCACTATTTTAAAAA-
1 AATTACCAAAATGTCACTTTTTTAAAAAT
* * * ** *
5898031 AAAT-CAAAAATGTTACCATTTTCAAAAT
1 AATTACCAAAATGTCACTTTTTTAAAAAT
* *
5898059 AATTCCCAAAATGTCACTTTTTTTCAAAAT
1 AATTACCAAAATGTCAC-TTTTTTAAAAAT
5898089 AATT
1 AATT
5898093 CCCAGAATAT
Statistics
Matches: 117, Mismatches: 25, Indels: 11
0.76 0.16 0.07
Matches are distributed among these distances:
27 18 0.15
28 11 0.09
29 56 0.48
30 32 0.27
ACGTcount: A:0.45, C:0.16, G:0.03, T:0.37
Consensus pattern (29 bp):
AATTACCAAAATGTCACTTTTTTAAAAAT
Found at i:5900022 original size:16 final size:17
Alignment explanation
Indices: 5900002--5900064 Score: 85
Period size: 16 Copynumber: 3.8 Consensus size: 17
5899992 CATTTACAGG
5900002 TCAGGTTAAAAACAAG-
1 TCAGGTTAAAAACAAGA
5900018 TCAGGTTAAAAAC-AGA
1 TCAGGTTAAAAACAAGA
* *
5900034 TCAGGTTAAAAGCCAGA
1 TCAGGTTAAAAACAAGA
*
5900051 TCAGGTTGAAAACA
1 TCAGGTTAAAAACA
5900065 GGTCGGGTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
15 2 0.05
16 25 0.61
17 14 0.34
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.19
Consensus pattern (17 bp):
TCAGGTTAAAAACAAGA
Found at i:5900038 original size:32 final size:33
Alignment explanation
Indices: 5899997--5900065 Score: 95
Period size: 32 Copynumber: 2.1 Consensus size: 33
5899987 CGGATCATTT
*
5899997 ACAGGTCAGGTTAAAAACAAG-TCAGGTTAAAA
1 ACAGATCAGGTTAAAAACAAGATCAGGTTAAAA
* * *
5900029 ACAGATCAGGTTAAAAGCCAGATCAGGTTGAAA
1 ACAGATCAGGTTAAAAACAAGATCAGGTTAAAA
5900062 ACAG
1 ACAG
5900066 GTCGGGTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 18 0.56
33 14 0.44
ACGTcount: A:0.45, C:0.14, G:0.23, T:0.17
Consensus pattern (33 bp):
ACAGATCAGGTTAAAAACAAGATCAGGTTAAAA
Found at i:5913964 original size:6 final size:6
Alignment explanation
Indices: 5913953--5913980 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
5913943 TAAGTTTCTC
5913953 TTTTTA TTTTTA TTTTTA TTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTT
5913981 CCACCTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:5914116 original size:20 final size:20
Alignment explanation
Indices: 5914091--5914138 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
5914081 GACCAACAAA
5914091 TTCGCAACGCGAACTCCAAT
1 TTCGCAACGCGAACTCCAAT
*
5914111 TTCGCAACGTGAACTCCAAT
1 TTCGCAACGCGAACTCCAAT
5914131 TTCGCAAC
1 TTCGCAAC
5914139 ACAGTTTCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.23
Consensus pattern (20 bp):
TTCGCAACGCGAACTCCAAT
Found at i:5914201 original size:21 final size:21
Alignment explanation
Indices: 5914177--5914238 Score: 115
Period size: 21 Copynumber: 3.0 Consensus size: 21
5914167 ATGAATCACA
5914177 TTGCGATTTTCTAAATTCGCG
1 TTGCGATTTTCTAAATTCGCG
5914198 TTGCGATTTTCTAAATTCGCG
1 TTGCGATTTTCTAAATTCGCG
*
5914219 TTGCGATTTTCCAAATTCGC
1 TTGCGATTTTCTAAATTCGC
5914239 AACACAGAAG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.19, C:0.21, G:0.18, T:0.42
Consensus pattern (21 bp):
TTGCGATTTTCTAAATTCGCG
Found at i:5914421 original size:22 final size:22
Alignment explanation
Indices: 5914376--5914422 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
5914366 CTACGGCGAC
* * *
5914376 ATCCGTCCCCATCTTCGACGAA
1 ATCCGTCCCCATCTCCAACAAA
5914398 ATCCGTCCCCATCTCCAACAAA
1 ATCCGTCCCCATCTCCAACAAA
5914420 ATC
1 ATC
5914423 GTCTATCTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.28, C:0.43, G:0.09, T:0.21
Consensus pattern (22 bp):
ATCCGTCCCCATCTCCAACAAA
Found at i:5914830 original size:20 final size:20
Alignment explanation
Indices: 5914805--5914844 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
5914795 AACGCGACGT
5914805 GTTGCGATTTTCATTTTTGC
1 GTTGCGATTTTCATTTTTGC
5914825 GTTGCGATTTTCATTTTTGC
1 GTTGCGATTTTCATTTTTGC
5914845 ATTTTGAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.10, C:0.15, G:0.20, T:0.55
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTTGC
Found at i:5916807 original size:4 final size:4
Alignment explanation
Indices: 5916798--5916839 Score: 66
Period size: 4 Copynumber: 10.5 Consensus size: 4
5916788 TTTTTCAACA
* *
5916798 TTAT TTAT TTAT TTAT TTAT TTAT TTAT GTAT TAAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
5916840 TCAGCGGCCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (4 bp):
TTAT
Found at i:5917014 original size:21 final size:21
Alignment explanation
Indices: 5916983--5917101 Score: 143
Period size: 21 Copynumber: 5.7 Consensus size: 21
5916973 GATGCACCTG
* *
5916983 TCATTGTTCAAGAGGCGCCTC
1 TCATCGTTCAAGAGGCCCCTC
5917004 -CTATCGTTCAAGAGGCCCCTC
1 TC-ATCGTTCAAGAGGCCCCTC
5917025 TCATCGTTCAAGAGGCCCCTC
1 TCATCGTTCAAGAGGCCCCTC
*
5917046 AT-ATCGTTCAAGAGGCCCCTG
1 -TCATCGTTCAAGAGGCCCCTC
* *
5917067 TCATCGTTCAAGAGGTCTCTC
1 TCATCGTTCAAGAGGCCCCTC
* *
5917088 CCACCGTTCAAGAG
1 TCATCGTTCAAGAG
5917102 TCCGATTCAC
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
20 2 0.02
21 82 0.95
22 2 0.02
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.25
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCCCTC
Found at i:5917096 original size:42 final size:41
Alignment explanation
Indices: 5916979--5917101 Score: 165
Period size: 42 Copynumber: 2.9 Consensus size: 41
5916969 GCCCGATGCA
*
5916979 CCTGTCATTGTTCAAGAGGCGCCTCCTATCGTTCAAGAGGCC
1 CCTGTCATCGTTCAAGAGGC-CCTCCTATCGTTCAAGAGGCC
* *
5917021 CCTCTCATCGTTCAAGAGGCCCCTCATATCGTTCAAGAGGCC
1 CCTGTCATCGTTCAAGAGG-CCCTCCTATCGTTCAAGAGGCC
* * *
5917063 CCTGTCATCGTTCAAGAGGTCTCTCCCACCGTTCAAGAG
1 CCTGTCATCGTTCAAGAGG-CCCTCCTATCGTTCAAGAG
5917102 TCCGATTCAC
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
42 70 0.99
43 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.21, T:0.25
Consensus pattern (41 bp):
CCTGTCATCGTTCAAGAGGCCCTCCTATCGTTCAAGAGGCC
Found at i:5918672 original size:14 final size:15
Alignment explanation
Indices: 5918637--5918672 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
5918627 GAAAGTCAAA
5918637 TTCGCG-TTGCGATT
1 TTCGCGTTTGCGATT
5918651 TTCG-GTTTGCGA-T
1 TTCGCGTTTGCGATT
5918664 TTCGCGTTT
1 TTCGCGTTT
5918673 CGAATTTGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.06, C:0.19, G:0.28, T:0.47
Consensus pattern (15 bp):
TTCGCGTTTGCGATT
Found at i:5918732 original size:20 final size:20
Alignment explanation
Indices: 5918707--5918761 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
5918697 TAACGCGATA
* *
5918707 ATCGCATTGCAAATTTGACT
1 ATCGCATTGCGAATTTAACT
*
5918727 ATCGCAATGCGAATTTAACT
1 ATCGCATTGCGAATTTAACT
* *
5918747 TTCGCGTTGCGAATT
1 ATCGCATTGCGAATT
5918762 CAAGGAAAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (20 bp):
ATCGCATTGCGAATTTAACT
Found at i:5921280 original size:24 final size:24
Alignment explanation
Indices: 5921253--5921299 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
5921243 CAAAATCCGA
5921253 GTATTGACCAAGATAAAAGTTCGG
1 GTATTGACCAAGATAAAAGTTCGG
* *
5921277 GTATTGACCAAGATCAAATTTCG
1 GTATTGACCAAGATAAAAGTTCG
5921300 AATACTGACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (24 bp):
GTATTGACCAAGATAAAAGTTCGG
Found at i:5921308 original size:24 final size:24
Alignment explanation
Indices: 5921257--5921308 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
5921247 ATCCGAGTAT
** *
5921257 TGACCAAGATAAAAGTTCGGGTAT
1 TGACCAAGATAAAAGTTCGAATAC
* *
5921281 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATAAAAGTTCGAATAC
5921305 TGAC
1 TGAC
5921309 TAGTACTCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.17, G:0.19, T:0.25
Consensus pattern (24 bp):
TGACCAAGATAAAAGTTCGAATAC
Found at i:5922059 original size:16 final size:15
Alignment explanation
Indices: 5922037--5922075 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
5922027 GAAATCATTG
5922037 AAAAATTATATAGAAA
1 AAAAATTATATA-AAA
* *
5922053 TAAAATTATGTAAAA
1 AAAAATTATATAAAA
5922068 AAAAATTA
1 AAAAATTA
5922076 GAGATGGGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (15 bp):
AAAAATTATATAAAA
Found at i:5922300 original size:21 final size:20
Alignment explanation
Indices: 5922243--5922304 Score: 70
Period size: 20 Copynumber: 3.0 Consensus size: 20
5922233 TTGCGAAATT
*
5922243 AAATTCGTGTTACGAATTCG
1 AAATTCGTGTTACGAATTTG
* * *
5922263 AAAATCGAGTTGCGAATTTG
1 AAATTCGTGTTACGAATTTG
*
5922283 AAATTCAGTGTTTCGAATTTG
1 AAATTC-GTGTTACGAATTTG
5922304 A
1 A
5922305 TTTCTTTGTT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
20 21 0.62
21 13 0.38
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.35
Consensus pattern (20 bp):
AAATTCGTGTTACGAATTTG
Found at i:5933804 original size:21 final size:21
Alignment explanation
Indices: 5933779--5933833 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
5933769 ACAAATACTC
*
5933779 AAATATTCAAAAATAAATG-TA
1 AAATATT-AAAAATAAAAGTTA
*
5933800 AAATATTGAAAATAAAAGTTA
1 AAATATTAAAAATAAAAGTTA
*
5933821 AATTATTAAAAAT
1 AAATATTAAAAAT
5933834 TAATATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 9 0.31
21 20 0.69
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (21 bp):
AAATATTAAAAATAAAAGTTA
Found at i:5933823 original size:20 final size:21
Alignment explanation
Indices: 5933782--5933833 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
5933772 AATACTCAAA
*
5933782 TATTCAAAAATAAATGTAAAA-
1 TATT-AAAAATAAAAGTAAAAT
* *
5933803 TATTGAAAATAAAAGTTAAAT
1 TATTAAAAATAAAAGTAAAAT
5933824 TATTAAAAAT
1 TATTAAAAAT
5933834 TAATATATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.33
Consensus pattern (21 bp):
TATTAAAAATAAAAGTAAAAT
Found at i:5933872 original size:20 final size:20
Alignment explanation
Indices: 5933822--5933874 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
5933812 TAAAAGTTAA
* *
5933822 ATTATTAAAAATTAATATAT
1 ATTATTAAAAACTAATAAAT
5933842 ATATATATAAAATACTAA-AAAT
1 AT-TAT-TAAAA-ACTAATAAAT
5933864 ATTATTAAAAA
1 ATTATTAAAAA
5933875 AAGTGAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
19 1 0.04
20 7 0.25
21 6 0.21
22 10 0.36
23 4 0.14
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
ATTATTAAAAACTAATAAAT
Found at i:5933925 original size:22 final size:21
Alignment explanation
Indices: 5933900--5933944 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
5933890 TCATAAGTTA
*
5933900 TAAAATGATAAATATATATCAT
1 TAAAATGATAAAAATATAT-AT
**
5933922 TAAAATTTTAAAAATATATAT
1 TAAAATGATAAAAATATATAT
5933943 TA
1 TA
5933945 TATATAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (21 bp):
TAAAATGATAAAAATATATAT
Found at i:5945217 original size:16 final size:16
Alignment explanation
Indices: 5945196--5945229 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
5945186 GTTTTTAATA
5945196 AATATA-ATAATATTTT
1 AATATATATAAT-TTTT
5945212 AATATATATAATTTTT
1 AATATATATAATTTTT
5945228 AA
1 AA
5945230 AAAAAGTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
AATATATATAATTTTT
Found at i:5946114 original size:19 final size:20
Alignment explanation
Indices: 5946087--5946124 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
5946077 TCACAGTTAC
*
5946087 TATATATATTA-TATTTAAA
1 TATAAATATTATTATTTAAA
5946106 TATAAATATTATTATTTAA
1 TATAAATATTATTATTTAA
5946125 TTTTTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TATAAATATTATTATTTAAA
Found at i:5946497 original size:23 final size:22
Alignment explanation
Indices: 5946471--5946560 Score: 57
Period size: 24 Copynumber: 4.2 Consensus size: 22
5946461 TCTTTTGTTA
*
5946471 TATAAAATAATACAAATTATAAT
1 TATAAAATAATA-AAATTAAAAT
* *
5946494 TATATAATTACATAAATTTAAAAT
1 TATA-AAATA-ATAAAATTAAAAT
*
5946518 T-TAAAATAAT--TATT--AAT
1 TATAAAATAATAAAATTAAAAT
*
5946535 TATAAAATAA-AAAATATATAAT
1 TATAAAATAATAAAAT-TAAAAT
5946557 TATA
1 TATA
5946561 CACGTCTATC
Statistics
Matches: 52, Mismatches: 7, Indels: 17
0.68 0.09 0.22
Matches are distributed among these distances:
17 4 0.08
18 8 0.15
19 4 0.08
20 1 0.02
21 2 0.04
22 11 0.21
23 6 0.12
24 13 0.25
25 3 0.06
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
TATAAAATAATAAAATTAAAAT
Found at i:5948126 original size:23 final size:22
Alignment explanation
Indices: 5948100--5948187 Score: 55
Period size: 24 Copynumber: 4.2 Consensus size: 22
5948090 TCTTTTGTTA
*
5948100 TATAAAATAATACAAATTATAAT
1 TATAAAATAATA-AAATTAAAAT
* *
5948123 TATATAATTACATAAATTTAAAAT
1 TATA-AAATA-ATAAAATTAAAAT
*
5948147 T-TAAAATAAT--TATT--AAT
1 TATAAAATAATAAAATTAAAAT
*
5948164 TATAAAATAA-AAAA-TATAAT
1 TATAAAATAATAAAATTAAAAT
5948184 TATA
1 TATA
5948188 CACGTCTATC
Statistics
Matches: 51, Mismatches: 7, Indels: 17
0.68 0.09 0.23
Matches are distributed among these distances:
17 4 0.08
18 9 0.18
19 3 0.06
20 7 0.14
21 2 0.04
22 4 0.08
23 6 0.12
24 13 0.25
25 3 0.06
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
TATAAAATAATAAAATTAAAAT
Found at i:5948327 original size:19 final size:19
Alignment explanation
Indices: 5948281--5948317 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
5948271 ATGTCATATT
5948281 TAAA-TAATTTTCATATAA
1 TAAAGTAATTTTCATATAA
5948299 TAAAGTAATTTTCATATAA
1 TAAAGTAATTTTCATATAA
5948318 AAATTAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (19 bp):
TAAAGTAATTTTCATATAA
Found at i:5954693 original size:15 final size:15
Alignment explanation
Indices: 5954669--5954703 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
5954659 ATATTATTAA
*
5954669 ATTAATTTATAAAAT
1 ATTAAATTATAAAAT
*
5954684 GTTAAATTATAAAAT
1 ATTAAATTATAAAAT
5954699 ATTAA
1 ATTAA
5954704 TTGTATAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (15 bp):
ATTAAATTATAAAAT
Found at i:5955235 original size:2 final size:2
Alignment explanation
Indices: 5955223--5955262 Score: 71
Period size: 2 Copynumber: 19.5 Consensus size: 2
5955213 TAATACAGTA
5955223 AT AT GAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5955263 CTAATGTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 35 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:5956073 original size:15 final size:15
Alignment explanation
Indices: 5956053--5956090 Score: 60
Period size: 14 Copynumber: 2.6 Consensus size: 15
5956043 ATTTGATTGG
5956053 ATAAAAAATTATTAA
1 ATAAAAAATTATTAA
5956068 ATAAAAAA-TATTAA
1 ATAAAAAATTATTAA
*
5956082 AAAAAAAAT
1 ATAAAAAAT
5956091 CAAATCACAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAAAAAATTATTAA
Found at i:5963095 original size:24 final size:24
Alignment explanation
Indices: 5963077--5963165 Score: 160
Period size: 24 Copynumber: 3.7 Consensus size: 24
5963067 TTTCTATTAT
*
5963077 AATACCTGACCTGGATTCTGATCG
1 AATACTTGACCTGGATTCTGATCG
*
5963101 GATACTTGACCTGGATTCTGATCG
1 AATACTTGACCTGGATTCTGATCG
5963125 AATACTTGACCTGGATTCTGATCG
1 AATACTTGACCTGGATTCTGATCG
5963149 AATACTTGACCTGGATT
1 AATACTTGACCTGGATT
5963166 ATGTTTTGAT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (24 bp):
AATACTTGACCTGGATTCTGATCG
Found at i:5975421 original size:34 final size:34
Alignment explanation
Indices: 5975383--5975448 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 34
5975373 AAAGGTCACT
5975383 TTATCT-TTTGAATATTTCAA-ATTAAAAGATATTA
1 TTATCTGTTT-AAT-TTTCAATATTAAAAGATATTA
*
5975417 TTATCTGTTTAATTTTGAATATTAAAAGATAT
1 TTATCTGTTTAATTTTCAATATTAAAAGATAT
5975449 CTAGTTGAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 5 0.17
34 21 0.72
35 3 0.10
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.48
Consensus pattern (34 bp):
TTATCTGTTTAATTTTCAATATTAAAAGATATTA
Found at i:5978841 original size:64 final size:64
Alignment explanation
Indices: 5978764--5978884 Score: 165
Period size: 64 Copynumber: 1.9 Consensus size: 64
5978754 TATTTGTTAC
* *
5978764 CTATTTAACTTTGA-ATATTAAAGATAA-TTATATCATTTTGAATATTTCAAATTAAAATAATAA
1 CTATTTAACTTTGACATATAAAAGACAACTT-TATC-TTTTGAATATTTCAAATTAAAATAATAA
5978827 T
64 T
* * *
5978828 CTATTTAAGTTTGACTTATAAAAGACAACTTTATCTTTTGAATATTTTAAATTAAAA
1 CTATTTAACTTTGACATATAAAAGACAACTTTATCTTTTGAATATTTCAAATTAAAA
5978885 GATATTATTA
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
64 34 0.68
65 14 0.28
66 2 0.04
ACGTcount: A:0.43, C:0.07, G:0.06, T:0.44
Consensus pattern (64 bp):
CTATTTAACTTTGACATATAAAAGACAACTTTATCTTTTGAATATTTCAAATTAAAATAATAAT
Found at i:5981143 original size:59 final size:60
Alignment explanation
Indices: 5981047--5981206 Score: 151
Period size: 59 Copynumber: 2.7 Consensus size: 60
5981037 GAATTGAGGG
* * ** ** * ** * *
5981047 ATGAAATTGGAATTTTTGAAAGTTTTGAGACCAATTTAAAAAGAGGGCCATATTTTAGAA
1 ATGAAATTAGAATATTCAAAAGTTTAAAGACTAATTTAAAAAGAGAACCACAGTTTAGAA
* * * * * *
5981107 ATTAAATTA-AATGTTCAAAAGTTTAAGGACTGATTTAAAATGAGAATCACAGTTTAGAA
1 ATGAAATTAGAATATTCAAAAGTTTAAAGACTAATTTAAAAAGAGAACCACAGTTTAGAA
*
5981166 ATGAAATTAGAATATTCAAAAGTTTAAAGATTAATTTAAAA
1 ATGAAATTAGAATATTCAAAAGTTTAAAGACTAATTTAAAA
5981207 TAAGATTAAA
Statistics
Matches: 78, Mismatches: 21, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
59 44 0.56
60 34 0.44
ACGTcount: A:0.46, C:0.06, G:0.16, T:0.33
Consensus pattern (60 bp):
ATGAAATTAGAATATTCAAAAGTTTAAAGACTAATTTAAAAAGAGAACCACAGTTTAGAA
Found at i:5981222 original size:59 final size:59
Alignment explanation
Indices: 5981100--5981223 Score: 151
Period size: 60 Copynumber: 2.1 Consensus size: 59
5981090 AGGGCCATAT
* * * * * * *
5981100 TTTAGAAATTAAATTAAATGTTCAAAAGTTTAAGGACTGATTTAAAATGAGAATCACAG
1 TTTAGAAATGAAATTAAATATTCAAAAGTTTAAAGACTAATTTAAAATAAGAATCAAAA
* *
5981159 TTTAGAAATGAAATTAGAATATTCAAAAGTTTAAAGATTAATTTAAAATAAG-ATTAAAA
1 TTTAGAAATGAAATTA-AATATTCAAAAGTTTAAAGACTAATTTAAAATAAGAATCAAAA
5981218 TTTAGA
1 TTTAGA
5981224 GACATATGAT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
59 25 0.45
60 30 0.55
ACGTcount: A:0.49, C:0.04, G:0.13, T:0.34
Consensus pattern (59 bp):
TTTAGAAATGAAATTAAATATTCAAAAGTTTAAAGACTAATTTAAAATAAGAATCAAAA
Found at i:5990181 original size:68 final size:68
Alignment explanation
Indices: 5990072--5990211 Score: 280
Period size: 68 Copynumber: 2.1 Consensus size: 68
5990062 AGATGTAAGC
5990072 GTTTCTCAAAAATGTAGTGTACAAATCTGTCTCATTTGTAAAATGCAGGATGATCTATGTTGAAA
1 GTTTCTCAAAAATGTAGTGTACAAATCTGTCTCATTTGTAAAATGCAGGATGATCTATGTTGAAA
5990137 ATG
66 ATG
5990140 GTTTCTCAAAAATGTAGTGTACAAATCTGTCTCATTTGTAAAATGCAGGATGATCTATGTTGAAA
1 GTTTCTCAAAAATGTAGTGTACAAATCTGTCTCATTTGTAAAATGCAGGATGATCTATGTTGAAA
5990205 ATG
66 ATG
5990208 GTTT
1 GTTT
5990212 GTAGATTACG
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 72 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.36
Consensus pattern (68 bp):
GTTTCTCAAAAATGTAGTGTACAAATCTGTCTCATTTGTAAAATGCAGGATGATCTATGTTGAAA
ATG
Found at i:5995150 original size:2 final size:2
Alignment explanation
Indices: 5995143--5995215 Score: 98
Period size: 2 Copynumber: 38.0 Consensus size: 2
5995133 ATCGGGCCAG
5995143 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
5995185 AT -T AA AT -T AA AT AT AT AA AT AT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5995216 TTTTTTAATT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
1 3 0.05
2 59 0.95
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6002884 original size:15 final size:15
Alignment explanation
Indices: 6002864--6002906 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
6002854 AATCTTAATA
*
6002864 TATTTAGATAATTAG
1 TATTTAAATAATTAG
** *
6002879 TATTTATCTAATTTG
1 TATTTAAATAATTAG
6002894 TATTTAAATAATT
1 TATTTAAATAATT
6002907 GATAAAAATT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.53
Consensus pattern (15 bp):
TATTTAAATAATTAG
Found at i:6008131 original size:2 final size:2
Alignment explanation
Indices: 6008124--6008162 Score: 62
Period size: 2 Copynumber: 19.5 Consensus size: 2
6008114 TATTTGATAT
6008124 GA GA GA GA -A GCA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA G-A GA GA GA GA GA GA GA GA GA GA GA GA GA G
6008163 TGGCAAACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 1 0.03
2 32 0.91
3 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.49, T:0.00
Consensus pattern (2 bp):
GA
Found at i:6012567 original size:23 final size:25
Alignment explanation
Indices: 6012515--6012572 Score: 61
Period size: 23 Copynumber: 2.5 Consensus size: 25
6012505 AAAACATGGG
6012515 ATCAAAAAAAAAATTAAGTAGGATT
1 ATCAAAAAAAAAATTAAGTAGGATT
* *
6012540 -T-AAAAAATAAA-TAATTA-GATT
1 ATCAAAAAAAAAATTAAGTAGGATT
*
6012561 ATCAAAATAAAA
1 ATCAAAAAAAAA
6012573 TTTCGTGAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
21 4 0.15
22 6 0.22
23 16 0.59
24 1 0.04
ACGTcount: A:0.64, C:0.03, G:0.07, T:0.26
Consensus pattern (25 bp):
ATCAAAAAAAAAATTAAGTAGGATT
Found at i:6014564 original size:2 final size:2
Alignment explanation
Indices: 6014557--6014586 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
6014547 TAATATTGAA
6014557 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6014587 TTGAAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6019445 original size:21 final size:20
Alignment explanation
Indices: 6019394--6019461 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 20
6019384 TTTTCCCAAT
*
6019394 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGAAAA
* * **
6019414 TCACAACGCGAATTGGGAAAA
1 TCGCAATGCGAA-TAAGAAAA
6019435 TCGCAATGCGATAATAA-AAAA
1 TCGCAATGCG--AATAAGAAAA
6019456 TCGCAA
1 TCGCAA
6019462 CGAGATACTT
Statistics
Matches: 36, Mismatches: 9, Indels: 5
0.72 0.18 0.10
Matches are distributed among these distances:
20 10 0.28
21 23 0.64
22 1 0.03
23 2 0.06
ACGTcount: A:0.46, C:0.18, G:0.19, T:0.18
Consensus pattern (20 bp):
TCGCAATGCGAATAAGAAAA
Found at i:6019481 original size:20 final size:20
Alignment explanation
Indices: 6019456--6019508 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
6019446 TAATAAAAAA
*
6019456 TCGCAACGAGATACTTACTT
1 TCGCAACGAGATACTGACTT
6019476 TCGCAAC-ACGATACTGACTT
1 TCGCAACGA-GATACTGACTT
*
6019496 TCGCAACGCGATA
1 TCGCAACGAGATA
6019509 ATACATAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (20 bp):
TCGCAACGAGATACTGACTT
Found at i:6021359 original size:18 final size:18
Alignment explanation
Indices: 6021338--6021382 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
6021328 TCCACTTCGG
*
6021338 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
* *
6021356 GAGCTATCACCTCACCTA
1 GAGCCATCACCTCACCCA
6021374 GAGCCATCA
1 GAGCCATCA
6021383 TCTGATCGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.27, C:0.42, G:0.16, T:0.16
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:6021909 original size:19 final size:20
Alignment explanation
Indices: 6021855--6021921 Score: 73
Period size: 20 Copynumber: 3.4 Consensus size: 20
6021845 TAGTTTACTT
* *
6021855 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
6021875 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
* **
6021895 TCGCAATGC-GAAATGAAAA
1 TCGCAACGCGGAAATGACTA
6021914 TCGCAACG
1 TCGCAACG
6021922 ACAAAAGCGC
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 14 0.36
20 25 0.64
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.15
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:6021952 original size:32 final size:32
Alignment explanation
Indices: 6021894--6022004 Score: 186
Period size: 32 Copynumber: 3.4 Consensus size: 32
6021884 GGAAATGGCT
*
6021894 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
* *
6021927 AGCGCAACGCGAAATGAAATCGCAACGCCAAA
1 ATCGCAACGCGAAATGAAATCGCAACGACAAA
6021959 ATCGCAACGCGAAATGAAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAATCGCAACGACAAA
6021991 ATCGCAACGCGAAA
1 ATCGCAACGCGAAA
6022005 CACAAATCGC
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
32 59 0.81
33 14 0.19
ACGTcount: A:0.46, C:0.25, G:0.20, T:0.09
Consensus pattern (32 bp):
ATCGCAACGCGAAATGAAATCGCAACGACAAA
Found at i:6021962 original size:14 final size:14
Alignment explanation
Indices: 6021910--6022000 Score: 65
Period size: 14 Copynumber: 5.9 Consensus size: 14
6021900 ATGCGAAATG
*
6021910 AAAATCGCAACGAC
1 AAAATCGCAACGCC
* *
6021924 AAAAGCGCAACGCGAA
1 AAAATCGCAACGC--C
6021940 ATGAAATCGCAACGCC
1 A--AAATCGCAACGCC
*
6021956 AAAATCGCAACGCGAA
1 AAAATCGCAACGC--C
*
6021972 ATGAAATCGCAACGAC
1 A--AAATCGCAACGCC
6021988 AAAATCGCAACGC
1 AAAATCGCAACGC
6022001 GAAACACAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 16
0.71 0.11 0.19
Matches are distributed among these distances:
14 34 0.57
16 4 0.07
18 22 0.37
ACGTcount: A:0.46, C:0.27, G:0.19, T:0.08
Consensus pattern (14 bp):
AAAATCGCAACGCC
Found at i:6023752 original size:39 final size:38
Alignment explanation
Indices: 6023614--6023792 Score: 171
Period size: 33 Copynumber: 4.9 Consensus size: 38
6023604 TCTTTTGGTT
* *
6023614 GAAATGAAAATCGCAACGAGATAATGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGCGA-AATGAAAATCGCAACGC
** *
6023653 GGAAATGACTATCGCAA--CG--A-GAGAATCGCAACGC
1 -GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
** * *
6023687 GAAATGACTATCGCGAC-C---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
*
6023720 GAAATGAAAATCGCAACCGCGAAATTAAAATCGCAACGC
1 GAAATGAAAATCGCAA-CGCGAAATGAAAATCGCAACGC
6023759 GAAATGAAAATCGCAACGCGAAATGAAAATCGCA
1 GAAATGAAAATCGCAACGCGAAATGAAAATCGCA
6023793 TTGCGATTTT
Statistics
Matches: 121, Mismatches: 11, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
33 42 0.35
34 16 0.13
35 2 0.02
38 19 0.16
39 28 0.23
40 14 0.12
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (38 bp):
GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
Found at i:6023798 original size:19 final size:19
Alignment explanation
Indices: 6023614--6023792 Score: 171
Period size: 19 Copynumber: 9.8 Consensus size: 19
6023604 TCTTTTGGTT
*
6023614 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
6023633 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
6023653 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
6023671 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
** *
6023687 GAAATGACTATCGCGAC-C
1 GAAATGAAAATCGCAACGC
*
6023705 ---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGC
6023720 GAAATGAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGC
*
6023740 GAAATTAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
6023759 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
6023778 GAAATGAAAATCGCA
1 GAAATGAAAATCGCA
6023793 TTGCGATTTT
Statistics
Matches: 133, Mismatches: 14, Indels: 26
0.77 0.08 0.15
Matches are distributed among these distances:
14 19 0.14
15 3 0.02
16 2 0.02
17 1 0.01
18 4 0.03
19 57 0.43
20 45 0.34
21 2 0.02
ACGTcount: A:0.44, C:0.22, G:0.22, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:6023810 original size:19 final size:19
Alignment explanation
Indices: 6023788--6023838 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
6023778 GAAATGAAAA
*
6023788 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
6023807 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
6023826 TCGCGTTGCGATT
1 TCGCGTTGCGATT
6023839 ATCTCGTTGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:6024477 original size:20 final size:20
Alignment explanation
Indices: 6024391--6024485 Score: 82
Period size: 20 Copynumber: 4.7 Consensus size: 20
6024381 GCGCTAAGTA
*
6024391 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* * *
6024411 TATCGTGTTGCGAAAGTAAG
1 TATCGCGTTGCGATAGTCAG
* ** * *
6024431 TATCTCGTTGCGATTTTTTAT
1 TATCGCGTTGCGA-TAGTCAG
*
6024452 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGATAGTCAG
*
6024472 TATCGCATTGCGAT
1 TATCGCGTTGCGAT
6024486 TTTCCCAATT
Statistics
Matches: 59, Mismatches: 15, Indels: 2
0.78 0.20 0.03
Matches are distributed among these distances:
20 46 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.36
Consensus pattern (20 bp):
TATCGCGTTGCGATAGTCAG
Found at i:6024504 original size:41 final size:41
Alignment explanation
Indices: 6024474--6024569 Score: 138
Period size: 41 Copynumber: 2.3 Consensus size: 41
6024464 ATAGTCAGTA
* * *
6024474 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
* * *
6024515 TCGCATTGCGAATTTCCCAATTCGCGTTGTGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
6024556 TCGCATTGCGAATT
1 TCGCATTGCGAATT
6024570 GGGAAAATTG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.41
Consensus pattern (41 bp):
TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
Found at i:6024518 original size:20 final size:20
Alignment explanation
Indices: 6024474--6024566 Score: 87
Period size: 20 Copynumber: 4.5 Consensus size: 20
6024464 ATAGTCAGTA
* **
6024474 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
6024495 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
6024515 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCG-ATTTACTTAT
* *
6024536 TCGCGTTGTGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
6024556 TCGCATTGCGA
1 TCGCATTGCGA
6024567 ATTGGGAAAA
Statistics
Matches: 56, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
20 31 0.55
21 25 0.45
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:6026108 original size:2 final size:2
Alignment explanation
Indices: 6026101--6026129 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
6026091 TCAAGTTTAT
6026101 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6026130 GAGTTAGGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6029750 original size:20 final size:20
Alignment explanation
Indices: 6029725--6029782 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
6029715 ATCCTATTCC
6029725 CTGGTAATCTTACATTCCCA
1 CTGGTAATCTTACATTCCCA
* *
6029745 CTGGTAATTTTACATTCTCA
1 CTGGTAATCTTACATTCCCA
6029765 CTGGTAATCTTACATTCC
1 CTGGTAATCTTACATTCC
6029783 GTAAACCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.24, C:0.26, G:0.10, T:0.40
Consensus pattern (20 bp):
CTGGTAATCTTACATTCCCA
Found at i:6030243 original size:3 final size:3
Alignment explanation
Indices: 6030235--6030353 Score: 238
Period size: 3 Copynumber: 39.7 Consensus size: 3
6030225 GTATATTTAT
6030235 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6030283 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6030331 ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA AT
6030354 TAATTTGAAA
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 116 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:6033131 original size:14 final size:14
Alignment explanation
Indices: 6033112--6033146 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
6033102 TGAACATTGT
6033112 TTTTCCTTTTATGC
1 TTTTCCTTTTATGC
6033126 TTTTCCTTTTATGC
1 TTTTCCTTTTATGC
6033140 TTTTCCT
1 TTTTCCT
6033147 CACCCACTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.06, C:0.23, G:0.06, T:0.66
Consensus pattern (14 bp):
TTTTCCTTTTATGC
Found at i:6033680 original size:18 final size:18
Alignment explanation
Indices: 6033618--6033681 Score: 62
Period size: 18 Copynumber: 3.6 Consensus size: 18
6033608 TTTATTGAAA
*
6033618 AACCGATAAACCGAACCG
1 AACCGAAAAACCGAACCG
6033636 AACCGAAAAACCCGAACCG
1 AACCGAAAAA-CCGAACCG
*
6033655 TTAA---AAAAACAGAACCG
1 --AACCGAAAAACCGAACCG
6033672 AACCGAAAAA
1 AACCGAAAAA
6033682 ACCGGTTTCG
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
15 2 0.05
17 7 0.18
18 19 0.50
19 8 0.21
21 2 0.05
ACGTcount: A:0.53, C:0.28, G:0.14, T:0.05
Consensus pattern (18 bp):
AACCGAAAAACCGAACCG
Found at i:6033919 original size:15 final size:15
Alignment explanation
Indices: 6033899--6033930 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
6033889 TAGGTAGATC
6033899 CTAACTCAAATGAGT
1 CTAACTCAAATGAGT
6033914 CTAACTCAAATGAGT
1 CTAACTCAAATGAGT
6033929 CT
1 CT
6033931 CGTAAGATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (15 bp):
CTAACTCAAATGAGT
Found at i:6035501 original size:12 final size:12
Alignment explanation
Indices: 6035484--6035522 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
6035474 AATAATGAAA
6035484 AGTACCGCGAAC
1 AGTACCGCGAAC
*
6035496 AGTACCACGAAC
1 AGTACCGCGAAC
*
6035508 AGTACCGTGAAC
1 AGTACCGCGAAC
6035520 AGT
1 AGT
6035523 GCTACAGTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.36, C:0.28, G:0.23, T:0.13
Consensus pattern (12 bp):
AGTACCGCGAAC
Found at i:6035608 original size:21 final size:21
Alignment explanation
Indices: 6035584--6035628 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
6035574 AAGCAAAATT
6035584 GTGCATCGATACACTGCTACA
1 GTGCATCGATACACTGCTACA
*
6035605 GTGCATCGATGCACTGCTACA
1 GTGCATCGATACACTGCTACA
6035626 GTG
1 GTG
6035629 ACTTTCGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (21 bp):
GTGCATCGATACACTGCTACA
Found at i:6036120 original size:24 final size:24
Alignment explanation
Indices: 6036093--6036165 Score: 80
Period size: 24 Copynumber: 3.1 Consensus size: 24
6036083 AGCTCGTATA
*
6036093 AATTTGCACTGAAGTGCCACGTAG
1 AATTTGCACCGAAGTGCCACGTAG
*
6036117 AATTTGTC-CCGAAG-GACCGCGTAG
1 AATTTG-CACCGAAGTG-CCACGTAG
*
6036141 AA-ATGCACCGAAGTGCCACGTAG
1 AATTTGCACCGAAGTGCCACGTAG
6036164 AA
1 AA
6036166 ATACATTGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
22 1 0.02
23 18 0.44
24 21 0.51
25 1 0.02
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.19
Consensus pattern (24 bp):
AATTTGCACCGAAGTGCCACGTAG
Found at i:6036162 original size:23 final size:23
Alignment explanation
Indices: 6036097--6036167 Score: 74
Period size: 23 Copynumber: 3.0 Consensus size: 23
6036087 CGTATAAATT
* *
6036097 TGCACTGAAGTGCCACGTAGAATT
1 TGCACCGAAGTGCCACGTAGAA-A
*
6036121 TGTC-CCGAAG-GACCGCGTAGAAA
1 TG-CACCGAAGTG-CCACGTAGAAA
6036144 TGCACCGAAGTGCCACGTAGAAA
1 TGCACCGAAGTGCCACGTAGAAA
6036167 T
1 T
6036168 ACATTGCAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
22 1 0.03
23 20 0.51
24 17 0.44
25 1 0.03
ACGTcount: A:0.31, C:0.24, G:0.27, T:0.18
Consensus pattern (23 bp):
TGCACCGAAGTGCCACGTAGAAA
Found at i:6036457 original size:30 final size:30
Alignment explanation
Indices: 6036423--6036485 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
6036413 TTATATCGCG
*
6036423 TAGACATATTATTTCCATACCTTTATCACA
1 TAGACATATCATTTCCATACCTTTATCACA
6036453 TAGACATATCATTTCCATACCTTTATCACA
1 TAGACATATCATTTCCATACCTTTATCACA
6036483 TAG
1 TAG
6036486 CTCATATAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.33, C:0.24, G:0.05, T:0.38
Consensus pattern (30 bp):
TAGACATATCATTTCCATACCTTTATCACA
Found at i:6042657 original size:21 final size:21
Alignment explanation
Indices: 6042623--6042666 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
6042613 AGTAAAATTA
*
6042623 TGCATTGATACACTGCTACAG
1 TGCATCGATACACTGCTACAG
*
6042644 TGCATCGATGCACTGCTACAG
1 TGCATCGATACACTGCTACAG
6042665 TG
1 TG
6042667 ACTTTCGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (21 bp):
TGCATCGATACACTGCTACAG
Found at i:6043157 original size:24 final size:24
Alignment explanation
Indices: 6043130--6043200 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 24
6043120 AGCTCGTATA
6043130 AATTTGCACTGAAGTGCCACGTAG
1 AATTTGCACTGAAGTGCCACGTAG
*
6043154 AATTTGTC-CCGAAG-GACCACGTAG
1 AATTTG-CACTGAAGTG-CCACGTAG
* *
6043178 AA-ATGCA-TCGAAGTGTCACGTAG
1 AATTTGCACT-GAAGTGCCACGTAG
6043201 TGCTATATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
22 1 0.03
23 14 0.37
24 22 0.58
25 1 0.03
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (24 bp):
AATTTGCACTGAAGTGCCACGTAG
Found at i:6043481 original size:30 final size:30
Alignment explanation
Indices: 6043446--6043517 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 30
6043436 TTATATCGCG
* *
6043446 TAGACATATTATTTTCATACCTTTATCACA
1 TAGACATATAATTTCCATACCTTTATCACA
6043476 TAGACATATAATTTCCATACCTTTATCACA
1 TAGACATATAATTTCCATACCTTTATCACA
*
6043506 TAAATCATATAA
1 TAGA-CATATAA
6043518 CTTTTCCTAC
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
30 31 0.82
31 7 0.18
ACGTcount: A:0.39, C:0.19, G:0.03, T:0.39
Consensus pattern (30 bp):
TAGACATATAATTTCCATACCTTTATCACA
Found at i:6047271 original size:19 final size:19
Alignment explanation
Indices: 6047247--6047298 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
6047237 AGTACAGTTG
6047247 GTGCATCGATGCATGAGGA
1 GTGCATCGATGCATGAGGA
6047266 GTGCATCGATGCATGAGGA
1 GTGCATCGATGCATGAGGA
*
6047285 GTGTATCGATGCAT
1 GTGCATCGATGCAT
6047299 CCCCTTAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.25, C:0.15, G:0.35, T:0.25
Consensus pattern (19 bp):
GTGCATCGATGCATGAGGA
Found at i:6047381 original size:24 final size:21
Alignment explanation
Indices: 6047349--6047405 Score: 71
Period size: 20 Copynumber: 2.6 Consensus size: 21
6047339 TGCATGGTAG
*
6047349 TGCATCGATGCACCTTTTAAGGAA
1 TGCATCGATGCACC-TGT-A-GAA
6047373 TGCATCGATGCA-CTGTAGAA
1 TGCATCGATGCACCTGTAGAA
6047393 TGCATCGATGCAC
1 TGCATCGATGCAC
6047406 TTCAATGGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
20 15 0.48
21 1 0.03
22 2 0.06
23 1 0.03
24 12 0.39
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (21 bp):
TGCATCGATGCACCTGTAGAA
Found at i:6056517 original size:3 final size:3
Alignment explanation
Indices: 6056509--6056545 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
6056499 TTTAACATTA
6056509 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
6056546 GAAACCATGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:6058821 original size:88 final size:88
Alignment explanation
Indices: 6058702--6058895 Score: 291
Period size: 88 Copynumber: 2.2 Consensus size: 88
6058692 CATATTTGGT
*
6058702 CTTCACAGAAGAGTAGTGAAATAACTCAACCTCGAATCTAATCTTCATAAAAGAGTAGTGAAACA
1 CTTCACAGAAGAGTAGTGAAATAACTCAACCTCGAATCTAATCTTCACAAAAGAGTAGTGAAACA
*
6058767 TATTCTTTTCAAGTCAATTCAAC
66 GATTCTTTTCAAGTCAATTCAAC
* * * * * *
6058790 CTTCACGGAAGAGTAGTGAAGTAAC-CTAACCTCGAGTCTGATTTTCACGAAAGAGTAGTGAAAC
1 CTTCACAGAAGAGTAGTGAAATAACTC-AACCTCGAATCTAATCTTCACAAAAGAGTAGTGAAAC
6058854 AGATTCTTTTCAAGTCAATTCAAC
65 AGATTCTTTTCAAGTCAATTCAAC
*
6058878 CTTCACAAAAGAGTAGTG
1 CTTCACAGAAGAGTAGTG
6058896 GAGCGATGCA
Statistics
Matches: 95, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
87 1 0.01
88 94 0.99
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.27
Consensus pattern (88 bp):
CTTCACAGAAGAGTAGTGAAATAACTCAACCTCGAATCTAATCTTCACAAAAGAGTAGTGAAACA
GATTCTTTTCAAGTCAATTCAAC
Found at i:6058891 original size:46 final size:45
Alignment explanation
Indices: 6058744--6058895 Score: 118
Period size: 46 Copynumber: 3.4 Consensus size: 45
6058734 CGAATCTAAT
*
6058744 CTTCATAAAAGAGTAGTGAAACATATTCTTTTCAAGTCAATTCAAC
1 CTTCACAAAAGAGTAGTGAAACA-ATTCTTTTCAAGTCAATTCAAC
** ** * ** * *
6058790 CTTCACGGAAGAGTAGTGAAGTAA-CCTAACCTCGAGTCTGATT----
1 CTTCACAAAAGAGTAGTGAAACAATTCT--TTTCAAGTC-AATTCAAC
*
6058833 -TTCACGAAAGAGTAGTGAAACAGATTCTTTTCAAGTCAATTCAAC
1 CTTCACAAAAGAGTAGTGAAACA-ATTCTTTTCAAGTCAATTCAAC
6058878 CTTCACAAAAGAGTAGTG
1 CTTCACAAAAGAGTAGTG
6058896 GAGCGATGCA
Statistics
Matches: 77, Mismatches: 19, Indels: 20
0.66 0.16 0.17
Matches are distributed among these distances:
41 3 0.04
42 25 0.32
43 1 0.01
44 4 0.05
45 1 0.01
46 40 0.52
47 3 0.04
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.28
Consensus pattern (45 bp):
CTTCACAAAAGAGTAGTGAAACAATTCTTTTCAAGTCAATTCAAC
Found at i:6059165 original size:3 final size:3
Alignment explanation
Indices: 6059122--6059157 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
6059112 GTTATAAGTA
6059122 TAT TAT TAT TAT TAT TAT TAT ATAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TA
6059158 AATTATTACA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:6060298 original size:2 final size:2
Alignment explanation
Indices: 6060293--6060318 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6060283 ATTTCCACAC
6060293 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6060319 TAGGATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6068569 original size:12 final size:13
Alignment explanation
Indices: 6068541--6068577 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
6068531 TAATTATTCT
6068541 TTTTAAAAAAAGA
1 TTTTAAAAAAAGA
* *
6068554 TTTTAAAATAAGT
1 TTTTAAAAAAAGA
6068567 TTTTAAAAAAA
1 TTTTAAAAAAA
6068578 AAGTTAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (13 bp):
TTTTAAAAAAAGA
Found at i:6073490 original size:30 final size:30
Alignment explanation
Indices: 6073454--6073514 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
6073444 CTCCACACAC
6073454 TACACTTCCAATTATAAATAATGCTTGTCT
1 TACACTTCCAATTATAAATAATGCTTGTCT
*
6073484 TACACTTCCGATTATAAATAATGCTTGTCT
1 TACACTTCCAATTATAAATAATGCTTGTCT
6073514 T
1 T
6073515 TCTTTAATCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.31, C:0.20, G:0.08, T:0.41
Consensus pattern (30 bp):
TACACTTCCAATTATAAATAATGCTTGTCT
Found at i:6074189 original size:2 final size:2
Alignment explanation
Indices: 6074182--6074266 Score: 163
Period size: 2 Copynumber: 43.0 Consensus size: 2
6074172 GGGCATTTTA
6074182 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6074224 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6074265 AT
1 AT
6074267 TTAAAATATT
Statistics
Matches: 82, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
1 1 0.01
2 81 0.99
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6074940 original size:31 final size:33
Alignment explanation
Indices: 6074899--6074988 Score: 112
Period size: 31 Copynumber: 2.8 Consensus size: 33
6074889 TCATACCTAA
*
6074899 AGTTCACTTTTTCTTTCATTTTAGTACACAC-C
1 AGTTAACTTTTTCTTTCATTTTAGTACACACGC
* * * * *
6074931 -GTTATCTTTTTGTTTCATTTTAATACCCCCGC
1 AGTTAACTTTTTCTTTCATTTTAGTACACACGC
6074963 AGTTAACTTTTTCTTTCATTTTAGTA
1 AGTTAACTTTTTCTTTCATTTTAGTA
6074989 TCTTAATTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
31 24 0.51
32 1 0.02
33 22 0.47
ACGTcount: A:0.20, C:0.21, G:0.08, T:0.51
Consensus pattern (33 bp):
AGTTAACTTTTTCTTTCATTTTAGTACACACGC
Found at i:6076942 original size:21 final size:21
Alignment explanation
Indices: 6076929--6076987 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
6076919 AAATAAAATG
6076929 ACACCCGTTTTAAAAAAAATTA
1 ACACCC-TTTTAAAAAAAATTA
6076951 ACACCCTTTTAAAAAGAAATTA
1 ACACCCTTTTAAAAA-AAATTA
* *
6076973 AC-CTCATTTAAAAAA
1 ACACCCTTTTAAAAAA
6076988 TTATTTACCA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.03
21 19 0.56
22 14 0.41
ACGTcount: A:0.51, C:0.19, G:0.03, T:0.27
Consensus pattern (21 bp):
ACACCCTTTTAAAAAAAATTA
Found at i:6076965 original size:22 final size:22
Alignment explanation
Indices: 6076929--6076987 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
6076919 AAATAAAATG
6076929 ACACCCGTTTT-AAAAAAAATTA
1 ACACCC-TTTTAAAAAAAAATTA
*
6076951 ACACCCTTTTAAAAAGAAATTA
1 ACACCCTTTTAAAAAAAAATTA
* *
6076973 AC-CTCATTTAAAAAA
1 ACACCCTTTTAAAAAA
6076988 TTATTTACCA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 14 0.44
22 18 0.56
ACGTcount: A:0.51, C:0.19, G:0.03, T:0.27
Consensus pattern (22 bp):
ACACCCTTTTAAAAAAAAATTA
Found at i:6078800 original size:28 final size:28
Alignment explanation
Indices: 6078763--6078842 Score: 133
Period size: 28 Copynumber: 2.9 Consensus size: 28
6078753 CGACATGTGC
* * *
6078763 AGGTCGCCATGCAATTCATGCGACATTT
1 AGGTCACCATGCAATCCACGCGACATTT
6078791 AGGTCACCATGCAATCCACGCGACATTT
1 AGGTCACCATGCAATCCACGCGACATTT
6078819 AGGTCACCATGCAATCCACGCGAC
1 AGGTCACCATGCAATCCACGCGAC
6078843 CAAGTCTACT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (28 bp):
AGGTCACCATGCAATCCACGCGACATTT
Found at i:6079060 original size:21 final size:21
Alignment explanation
Indices: 6079026--6079067 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
6079016 TTTTTCATTG
* *
6079026 GAGAAGAAATAATTGATGCAT
1 GAGAACAAAAAATTGATGCAT
*
6079047 GAGAACAAAAAATTGTTGCAT
1 GAGAACAAAAAATTGATGCAT
6079068 TATTGTAGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.48, C:0.07, G:0.21, T:0.24
Consensus pattern (21 bp):
GAGAACAAAAAATTGATGCAT
Found at i:6079201 original size:21 final size:21
Alignment explanation
Indices: 6079175--6079218 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
6079165 TAATATTTAA
6079175 ATTAGTTTGTTAGTTTAAATT
1 ATTAGTTTGTTAGTTTAAATT
*
6079196 ATTAGTTTGTTAGTTTAAGTT
1 ATTAGTTTGTTAGTTTAAATT
6079217 AT
1 AT
6079219 ATTTTATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.57
Consensus pattern (21 bp):
ATTAGTTTGTTAGTTTAAATT
Found at i:6084668 original size:32 final size:33
Alignment explanation
Indices: 6084632--6084717 Score: 90
Period size: 30 Copynumber: 2.7 Consensus size: 33
6084622 GGAGAAAAGG
* *
6084632 AATATGTGATATGTGAAAGTGAATCATATGA-A
1 AATATGTGATATGTGAAAGTGAACCACATGATA
* * * *
6084664 AATA--TGCTACGTGCAAGTGAACCACATGATT
1 AATATGTGATATGTGAAAGTGAACCACATGATA
6084695 AA-ATGTGATATGTGAAAGTGAAC
1 AATATGTGATATGTGAAAGTGAAC
6084718 TATATATATA
Statistics
Matches: 42, Mismatches: 9, Indels: 6
0.74 0.16 0.11
Matches are distributed among these distances:
30 21 0.50
31 2 0.05
32 19 0.45
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (33 bp):
AATATGTGATATGTGAAAGTGAACCACATGATA
Found at i:6084998 original size:31 final size:31
Alignment explanation
Indices: 6084928--6085047 Score: 125
Period size: 31 Copynumber: 3.8 Consensus size: 31
6084918 GTCGAGGGTT
* *
6084928 TACCTATGTTCTACGGAACATATGGACAGAA
1 TACCTATGTTCTACGGAACATATGGATAGTA
* *
6084959 TTACCTATG-TCTTTCGGGACATATGGATAGTA
1 -TACCTATGTTC-TACGGAACATATGGATAGTA
* * *
6084991 TACCTATGTTCTAAGGAACATATGGATAATT
1 TACCTATGTTCTACGGAACATATGGATAGTA
* * *
6085022 TACCTAGGTTCTTCGGGACATATGGA
1 TACCTATGTTCTACGGAACATATGGA
6085048 CAGTTGCCGA
Statistics
Matches: 73, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
31 47 0.64
32 26 0.36
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.33
Consensus pattern (31 bp):
TACCTATGTTCTACGGAACATATGGATAGTA
Found at i:6086685 original size:21 final size:21
Alignment explanation
Indices: 6086656--6086699 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
6086646 TTATATAAAT
6086656 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
*
6086677 ATAATTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
6086698 AT
1 AT
6086700 TTAAAGATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.57, C:0.16, G:0.00, T:0.27
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:6086833 original size:20 final size:21
Alignment explanation
Indices: 6086804--6086844 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
6086794 TGCTGCGATA
*
6086804 ATGCAACAATT-TTTGTTCTC
1 ATGCAACAATTATTTCTTCTC
*
6086824 ATGCATCAATTATTTCTTCTC
1 ATGCAACAATTATTTCTTCTC
6086845 CCATGAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.24, C:0.22, G:0.07, T:0.46
Consensus pattern (21 bp):
ATGCAACAATTATTTCTTCTC
Found at i:6090065 original size:22 final size:22
Alignment explanation
Indices: 6090023--6090072 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
6090013 AATGAATATT
*
6090023 AAATAAATCGAAGAAAAAAAAC
1 AAATAAATCGAAGAAAAAAAAA
* *
6090045 AAATAAATTG-AGTAAATAAAAA
1 AAATAAATCGAAG-AAAAAAAAA
6090067 AAATAA
1 AAATAA
6090073 GAATAAGAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.72, C:0.04, G:0.08, T:0.16
Consensus pattern (22 bp):
AAATAAATCGAAGAAAAAAAAA
Found at i:6091794 original size:67 final size:67
Alignment explanation
Indices: 6091723--6091851 Score: 181
Period size: 67 Copynumber: 1.9 Consensus size: 67
6091713 TTAAAAATGA
* * *
6091723 TTTC-AAAACTATATATA-TATATATAAGTTTTTAAAATATTTTTAAAAACTATATATTATATAT
1 TTTCAAAAACTATATATATTATATAT-A-TTTTCAAAATATTTTCAAAAACTATATAATATATAT
6091786 TTGT
64 TTGT
* *
6091790 TTTCAAAAACTATATATATTATATATATTTTCAAGATGTTTTCAAAAACTATATAATATATA
1 TTTCAAAAACTATATATATTATATATATTTTCAAAATATTTTCAAAAACTATATAATATATA
6091852 CATTTTCAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
67 34 0.62
68 14 0.25
69 7 0.13
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47
Consensus pattern (67 bp):
TTTCAAAAACTATATATATTATATATATTTTCAAAATATTTTCAAAAACTATATAATATATATTT
GT
Found at i:6091817 original size:79 final size:77
Alignment explanation
Indices: 6091534--6091798 Score: 240
Period size: 79 Copynumber: 3.4 Consensus size: 77
6091524 AAAATATTTT
* * * * *
6091534 AAAACTATATATTATATATATATATTT-AAAAA-AATATTCAAAACTATATATTATATA-GTTTT
1 AAAACAATATATTATATA-ATTTTTTTCAAAAATGAT-TTCAAAACTATATATTATATATATTTT
* *
6091596 CAAAATGTTTTTTA
64 CAAAATATTTTTAA
* * * * * *
6091610 AAAACTATATACTATAT-A-TATTTTC-AAAATGTTTTTTAAAAAACAATATATTATATATATTT
1 AAAACAATATATTATATAATTTTTTTCAAAAATG--ATTT-CAAAACTATATATTATATATATTT
6091672 TCAAAATATTTTTAAA
63 TCAAAATATTTTT-AA
*
6091688 AAAACAATATATTATATAATTTTTTTTAAAAATGATTTCAAAACTATATATATATATATAAGTTT
1 AAAACAATATATTATATAATTTTTTTCAAAAATGATTTCAAAACTATATAT-TATATAT-A-TTT
*
6091753 TTAAAATATTTTT-A
63 TCAAAATATTTTTAA
*
6091767 AAAACTATATATTATAT-ATTTGTTTTCAAAAA
1 AAAACAATATATTATATAATTT-TTTTCAAAAA
6091799 CTATATATAT
Statistics
Matches: 154, Mismatches: 21, Indels: 25
0.77 0.10 0.12
Matches are distributed among these distances:
73 7 0.05
74 1 0.01
75 2 0.01
76 34 0.22
77 15 0.10
78 31 0.20
79 37 0.24
80 6 0.04
81 21 0.14
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.45
Consensus pattern (77 bp):
AAAACAATATATTATATAATTTTTTTCAAAAATGATTTCAAAACTATATATTATATATATTTTCA
AAATATTTTTAA
Found at i:6091820 original size:28 final size:28
Alignment explanation
Indices: 6091758--6091823 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
6091748 AGTTTTTAAA
*
6091758 ATATTTTTAAAAACTATATATTATATAT
1 ATATTTTCAAAAACTATATATTATATAT
* *
6091786 TTGTTTTCAAAAACTATATA-TATTATAT
1 ATATTTTCAAAAACTATATATTA-TATAT
6091814 ATATTTTCAA
1 ATATTTTCAA
6091824 GATGTTTTCA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 2 0.06
28 30 0.94
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (28 bp):
ATATTTTCAAAAACTATATATTATATAT
Found at i:6091843 original size:37 final size:37
Alignment explanation
Indices: 6091534--6091862 Score: 241
Period size: 39 Copynumber: 8.8 Consensus size: 37
6091524 AAAATATTTT
* ** *
6091534 AAAACTATATATTATATATATATATTTAAAAAAATATTC-
1 AAAACTATATA-T-TATATATAT-TTTCAAAATGTTTTCA
* *
6091573 AAAACTATATATTATATA-GTTTTCAAAATGTTTTTTA
1 AAAACTATATATTATATATATTTTCAAAATG-TTTTCA
* *
6091610 AAAACTATATACTATATATATTTTCAAAATGTTTTTTAA
1 AAAACTATATATTATATATATTTTCAAAATG--TTTTCA
* * *
6091649 AAAACAATATATTATATATATTTTCAAAATATTTTTAAA
1 AAAACTATATATTATATATATTTTCAAAAT-GTTTT-CA
* * * *
6091688 AAAACAATATATTATATAATTTTTTTTAAAAATGATTTC-
1 AAAACTATATATTATAT-A--TATTTTCAAAATGTTTTCA
* * *
6091727 AAAACTATATATATATATATAAGTTTTTAAAATATTTTTA
1 AAAACTATATAT-TATATAT-A-TTTTCAAAATGTTTTCA
6091767 AAAACTATATA-T-TATATA--TT-----TGTTTTCA
1 AAAACTATATATTATATATATTTTCAAAATGTTTTCA
*
6091795 AAAACTATATATATTATATATATTTTCAAGATGTTTTCA
1 AAAAC--TATATATTATATATATTTTCAAAATGTTTTCA
* *
6091834 AAAACTATATAATATATACATTTTCAAAA
1 AAAACTATATATTATATATATTTTCAAAA
6091863 ATCGTTTACT
Statistics
Matches: 238, Mismatches: 28, Indels: 50
0.75 0.09 0.16
Matches are distributed among these distances:
28 11 0.05
30 6 0.03
31 1 0.00
32 6 0.03
33 2 0.01
34 2 0.01
35 7 0.03
36 5 0.02
37 50 0.21
38 17 0.07
39 101 0.42
40 17 0.07
41 3 0.01
42 10 0.04
ACGTcount: A:0.47, C:0.06, G:0.02, T:0.45
Consensus pattern (37 bp):
AAAACTATATATTATATATATTTTCAAAATGTTTTCA
Found at i:6091911 original size:2 final size:2
Alignment explanation
Indices: 6091894--6091930 Score: 51
Period size: 2 Copynumber: 19.0 Consensus size: 2
6091884 TTTAAAAAAT
6091894 TA TA CTA TA T- TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6091931 ATACATAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
1 2 0.06
2 28 0.88
3 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:6102099 original size:103 final size:103
Alignment explanation
Indices: 6101915--6102132 Score: 373
Period size: 103 Copynumber: 2.1 Consensus size: 103
6101905 GTCGAGGGTC
* *
6101915 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGCGAGACACATAC
* *
6101980 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
* *
6102018 TATGTGGTTCTTCGAGACATGTATGTATTCTTTGGAACATGTGTGAAGTCTGGCGAGACACATAC
1 TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGCGAGACACATAC
*
6102083 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
6102121 TATGTGGTCCTT
1 TATGTGGTCCTT
6102133 ATGGACATTA
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
103 107 1.00
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGCGAGACACATAC
TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
Done.