Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007960.1 Hibiscus syriacus cultivar Beakdansim tig00110387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7905731
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 35 of 39
Found at i:6706477 original size:14 final size:15
Alignment explanation
Indices: 6706452--6706481 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
6706442 ATGTCAATAC
6706452 ATAAAGAATTTGATT
1 ATAAAGAATTTGATT
6706467 ATAAA-AATTTGATT
1 ATAAAGAATTTGATT
6706481 A
1 A
6706482 CTATCAGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATAAAGAATTTGATT
Found at i:6716836 original size:45 final size:46
Alignment explanation
Indices: 6716761--6716865 Score: 151
Period size: 45 Copynumber: 2.3 Consensus size: 46
6716751 TTTGAGTTTC
* * *
6716761 ATTT-TTTTTTGAATAAGCATGCGAACTAGATATCATGCGGTTAGG
1 ATTTATTTTTTGAACAAGCATGCAAACTAGATATCATGCAGTTAGG
*
6716806 -TTTATTTTTTGAACAAGCATGCAAATTAGATATCATGCAGTTAGG
1 ATTTATTTTTTGAACAAGCATGCAAACTAGATATCATGCAGTTAGG
6716851 ATTTATTTTTGTGAA
1 ATTTATTTTT-TGAA
6716866 TAACAAAGCA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
44 3 0.06
45 37 0.70
46 9 0.17
47 4 0.08
ACGTcount: A:0.30, C:0.10, G:0.19, T:0.41
Consensus pattern (46 bp):
ATTTATTTTTTGAACAAGCATGCAAACTAGATATCATGCAGTTAGG
Found at i:6728110 original size:55 final size:52
Alignment explanation
Indices: 6727857--6728220 Score: 387
Period size: 51 Copynumber: 6.9 Consensus size: 52
6727847 GAAGCAAACT
* *
6727857 CGTTTGTTGAAGATT-GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
1 CGTTTATTGAAGATTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACA
* ** *
6727908 AGTTCGTTGAAGATT-GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
1 CGTTTATTGAAGATTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACA
* ** *
6727959 AGTTCGTTGAAGATT-GAGTCATATACTCTCTGAAGGAATAGGGAGCGGACA
1 CGTTTATTGAAGATTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACA
*
6728010 CGTTTATTGAAGA-TCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACC
1 CGTTTATTGAAGATTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACA
* * * * *
6728061 CGTTTTTTGAAGATTGTTCGAGTCTTATACTCCCTGAACGAATATGGAGCAGACA
1 CGTTTATTGAAGA---TTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACA
* * * **
6728116 CGTTTACTGAAGATTATTCGAGTCTTATACTCCCTGAATGAATAGGGAGCAAACA
1 CGTTTATTGAAG---ATTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACA
* * *
6728171 CGTTTACTGAATATTGTTCGAGTCTTATACTC-CATGAAAGAATAGGGAGC
1 CGTTTATTGAAGA---TTCGAGTCTTATACTCTC-TGAAGGAATAGGGAGC
6728221 AGACCCGCCA
Statistics
Matches: 280, Mismatches: 21, Indels: 20
0.87 0.07 0.06
Matches are distributed among these distances:
50 1 0.00
51 155 0.55
52 1 0.00
54 1 0.00
55 121 0.43
58 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (52 bp):
CGTTTATTGAAGATTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACA
Found at i:6728240 original size:110 final size:109
Alignment explanation
Indices: 6727923--6728224 Score: 298
Period size: 110 Copynumber: 2.8 Consensus size: 109
6727913 GTTGAAGATT
* * ** * *** *
6727923 GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACAAGTTCGTTGAAGA---TT-GAGTCATATA
1 GAGTCTTATACTCCCTGAAGGAATAGGGAGCAAACACGTTTACTGAAGATTGTTCGAGTCTTATA
* * *
6727984 CTCTC-TGAAGGAATAGGGAGCGGACACGTTTATTGAAG---A-TC
66 CTC-CATGAAAGAATAGGGAGCAGACACGATTA-TGAAGATTATTC
* ** * **
6728025 GAGTCTTATACTCTCTGAAGGAATAGGGAGCGGACCCGTTTTTTGAAGATTGTTCGAGTCTTATA
1 GAGTCTTATACTCCCTGAAGGAATAGGGAGCAAACACGTTTACTGAAGATTGTTCGAGTCTTATA
* * * *
6728090 CTCCCTGAACGAATATGGAGCAGACACGTTTACTGAAGATTATTC
66 CTCCATGAAAGAATAGGGAGCAGACACGATTA-TGAAGATTATTC
* *
6728135 GAGTCTTATACTCCCTGAATGAATAGGGAGCAAACACGTTTACTGAATATTGTTCGAGTCTTATA
1 GAGTCTTATACTCCCTGAAGGAATAGGGAGCAAACACGTTTACTGAAGATTGTTCGAGTCTTATA
6728200 CTCCATGAAAGAATAGGGAGCAGAC
66 CTCCATGAAAGAATAGGGAGCAGAC
6728225 CCGCCATTTG
Statistics
Matches: 170, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
102 44 0.26
105 3 0.02
106 41 0.24
109 1 0.01
110 81 0.48
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (109 bp):
GAGTCTTATACTCCCTGAAGGAATAGGGAGCAAACACGTTTACTGAAGATTGTTCGAGTCTTATA
CTCCATGAAAGAATAGGGAGCAGACACGATTATGAAGATTATTC
Found at i:6735356 original size:29 final size:29
Alignment explanation
Indices: 6735322--6735380 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
6735312 CCTAAATTAA
6735322 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
6735351 TTTGATGTCATTGCTTACATCAATTTAGT
1 TTTGATGTCATTGCTTACATCAATTTAGT
6735380 T
1 T
6735381 AGGTAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.49
Consensus pattern (29 bp):
TTTGATGTCATTGCTTACATCAATTTAGT
Found at i:6736572 original size:30 final size:30
Alignment explanation
Indices: 6736538--6736615 Score: 120
Period size: 31 Copynumber: 2.6 Consensus size: 30
6736528 ATATTATTTT
6736538 AGAATTATCTGAAATTTATGTTTTAAAAAA
1 AGAATTATCTGAAATTTATGTTTTAAAAAA
*
6736568 AGAATTATCTTCAAATTTATGTTTTAAAAAA
1 AGAATTATC-TGAAATTTATGTTTTAAAAAA
* *
6736599 ACAATTATATGAAATTT
1 AGAATTATCTGAAATTT
6736616 TTGATGTTGG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
30 16 0.37
31 27 0.63
ACGTcount: A:0.46, C:0.05, G:0.08, T:0.41
Consensus pattern (30 bp):
AGAATTATCTGAAATTTATGTTTTAAAAAA
Found at i:6737349 original size:31 final size:29
Alignment explanation
Indices: 6737313--6737400 Score: 81
Period size: 31 Copynumber: 2.9 Consensus size: 29
6737303 ACTGTTAGTT
*
6737313 TAAATA-TTAAAATTTCATAAAATAATATTTA
1 TAAATACTAAAAATTT-AT-AAATAATA-TTA
*
6737344 TAAATACTAAAAATTTATAATTAATATTA
1 TAAATACTAAAAATTTATAAATAATATTA
6737373 TAAACATAAC-AAAAATTTATAACATAAT
1 T-AA-AT-ACTAAAAATTTATAA-ATAAT
6737401 GTTTTATAAT
Statistics
Matches: 49, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
29 4 0.08
30 9 0.18
31 22 0.45
32 14 0.29
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (29 bp):
TAAATACTAAAAATTTATAAATAATATTA
Found at i:6737739 original size:30 final size:30
Alignment explanation
Indices: 6737703--6737812 Score: 105
Period size: 31 Copynumber: 3.6 Consensus size: 30
6737693 GACCTCATTC
*
6737703 AAATTTAGGGGTTAAATATTAATTTATCTA
1 AAATTTAGGGGTCAAATATTAATTTATCTA
* *
6737733 AAATTTAGGAGTCAAA-ATGATATTTCATCTA
1 AAATTTAGGGGTCAAATATTA-ATTT-ATCTA
* * *
6737764 AAATTTAGAGGTCCAACTATTATTTTATCTA
1 AAATTTAGGGGT-CAAATATTAATTTATCTA
**
6737795 AAGCTTAGGGGGTCAAAT
1 AAATTTA-GGGGTCAAAT
6737813 TAAAAATTAT
Statistics
Matches: 63, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
29 3 0.05
30 18 0.29
31 29 0.46
32 10 0.16
33 3 0.05
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.37
Consensus pattern (30 bp):
AAATTTAGGGGTCAAATATTAATTTATCTA
Found at i:6737926 original size:32 final size:31
Alignment explanation
Indices: 6737886--6737945 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 31
6737876 GATCAAAATG
* * *
6737886 TAATAATCAATAACATAAGTGACTAAAAAAA
1 TAATAATCAACAACATAAATGACCAAAAAAA
*
6737917 TAATAAATCAACAATATAAATGACCAAAA
1 TAAT-AATCAACAACATAAATGACCAAAA
6737946 CATTACTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 4 0.17
32 20 0.83
ACGTcount: A:0.62, C:0.12, G:0.05, T:0.22
Consensus pattern (31 bp):
TAATAATCAACAACATAAATGACCAAAAAAA
Found at i:6739687 original size:64 final size:64
Alignment explanation
Indices: 6739608--6739747 Score: 165
Period size: 64 Copynumber: 2.2 Consensus size: 64
6739598 CGGATCCTGG
* * *
6739608 CAGGTCGGGTAAAATCGGATACAGGTCA-AGTCAGGTAAATTTAACACCAGATCCAGATCGGGTT
1 CAGGTCAGGTCAAATCAG-TACAGGTCATAGTCAGGTAAATTTAACACCAGATCCAGATCGGGTT
* * * ** ** *
6739672 CAGGTCAGGTCAAATCAGTTCGGGTTATTTTCAGGTTGATTTGACACCAGATCCAGATCGGGTT
1 CAGGTCAGGTCAAATCAGTACAGGTCATAGTCAGGTAAATTTAACACCAGATCCAGATCGGGTT
6739736 CAGGTCAGGTCA
1 CAGGTCAGGTCA
6739748 TTTTCAGTTC
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
63 6 0.09
64 58 0.91
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (64 bp):
CAGGTCAGGTCAAATCAGTACAGGTCATAGTCAGGTAAATTTAACACCAGATCCAGATCGGGTT
Found at i:6740452 original size:213 final size:212
Alignment explanation
Indices: 6740048--6740871 Score: 1271
Period size: 213 Copynumber: 3.9 Consensus size: 212
6740038 ATTTTATGAA
* *
6740048 AAATATAAATTTGAGAATTAAATTGAACAAATATGAAATTACAAATAAAAAATTTAAATAAATTA
1 AAATA-AAATTTGAGGACTAAATTGAACAAATATGAAATTACAAAT-AAAAATTTAAATAAATTA
6740113 AACAACACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACA
64 AAC-A-ACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACA
6740178 AAAAAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGGATTAAGTAATA
127 AAAAAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATA-GATTAAGTAATA
6740243 AGTATGGATCAATTTCATATGC
191 AGTATGGATCAATTTCATATGC
*
6740265 AAATAAAATTTGGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAT
1 AAATAAAATTT-GAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAA
*
6740330 ACAACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTCAGGTTGAAATTAATAC-AAA
65 ACAACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAA
*
6740394 AAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGGATTAAGTAATACGT
130 AAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATA-GATTAAGTAATAAGT
6740459 ATGGATCAATTTCATATGC
194 ATGGATCAATTTCATATGC
*
6740478 AAATAAAATTTGGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAT
1 AAATAAAATTT-GAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAA
*
6740543 AC-ACACATTGATGA-GGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATACAAAA
65 ACAACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAA
* * *
6740606 AAGTACTAAATTATACCCATTTAAAAATTTATGGACCAATTTAAAAATAGA--AA-TAAGTAAGT
130 AAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGATTAAGTAA-TAAGT
* *
6740668 ATGGGTCAATTTCAGATGC
194 ATGGATCAATTTCATATGC
* * *
6740687 AAAT-AAATTTGAAGACTAAATTGAATAAATATGAAATTACAAATAAAAA-TTAAA-ATATTAAA
1 AAATAAAATTTGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAA
* * *
6740749 CAACACA---A-AAGGGATCAAATCGAAATAATTTTAAATTTTGAGGTTGAAATTAATATAAAAA
66 CAACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAA
* * * *
6740810 TGTACTAAATTATACTCATTTAAAAA-TTATGGGCCAATTAATAAATAGAATAAGTAATAAGT
131 AGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGATTAAGTAATAAGT
6740872 TGAGAAAAAA
Statistics
Matches: 573, Mismatches: 26, Indels: 29
0.91 0.04 0.05
Matches are distributed among these distances:
202 21 0.04
203 72 0.13
204 7 0.01
205 10 0.02
206 10 0.02
207 37 0.06
208 9 0.02
209 27 0.05
211 45 0.08
212 61 0.11
213 153 0.27
214 57 0.10
215 1 0.00
216 26 0.05
217 37 0.06
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.30
Consensus pattern (212 bp):
AAATAAAATTTGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAA
CAACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAA
AGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGATTAAGTAATAAGTAT
GGATCAATTTCATATGC
Found at i:6740899 original size:2 final size:2
Alignment explanation
Indices: 6740894--6741017 Score: 106
Period size: 2 Copynumber: 59.5 Consensus size: 2
6740884 AAAACAACTA
6740894 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * * *
6740936 A- AA ACT AT AGT TT AT AT AT AA AGT AT GT GT AT AT AT AT AT AA
1 AT AT A-T AT A-T AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT
* * *
6740978 ACT AT AT AGT TT AT AT AT AT AT AT GT AT AA ACT AT AT AT A
1 A-T AT AT A-T AT AT AT AT AT AT AT AT AT AT A-T AT AT AT A
6741018 CCATGTTTAA
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
1 1 0.01
2 93 0.93
3 6 0.06
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (2 bp):
AT
Found at i:6740953 original size:17 final size:18
Alignment explanation
Indices: 6740929--6740996 Score: 64
Period size: 21 Copynumber: 3.4 Consensus size: 18
6740919 TATATATATA
6740929 TATATATAAAACTATAGTT
1 TATATAT-AAACTATAGTT
* *
6740948 TATATATAAAGTATGTGTAT
1 TATATATAAACTAT-AGT-T
6740968 ATATATATAAACTATATAGTT
1 -TATATATAAAC--TATAGTT
6740989 TATATATA
1 TATATATA
6740997 TATATGTATA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
18 6 0.15
19 9 0.22
20 9 0.22
21 11 0.28
22 2 0.05
23 3 0.08
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (18 bp):
TATATATAAACTATAGTT
Found at i:6740953 original size:19 final size:19
Alignment explanation
Indices: 6740929--6740996 Score: 68
Period size: 19 Copynumber: 3.4 Consensus size: 19
6740919 TATATATATA
6740929 TATATATAAAACTATAGTT
1 TATATATAAAACTATAGTT
*
6740948 TATATAT-AAAGTAT-GTGT
1 TATATATAAAACTATAGT-T
6740966 ATATATATATAAACTATATAGTT
1 -TATATATA-AAAC--TATAGTT
6740989 TATATATA
1 TATATATA
6740997 TATATGTATA
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
17 2 0.05
18 7 0.17
19 14 0.35
21 3 0.08
22 8 0.20
23 4 0.10
24 2 0.05
ACGTcount: A:0.46, C:0.03, G:0.07, T:0.44
Consensus pattern (19 bp):
TATATATAAAACTATAGTT
Found at i:6741028 original size:20 final size:20
Alignment explanation
Indices: 6740991--6741037 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
6740981 ATATAGTTTA
*
6740991 TATATATA-TATGTATAAAC
1 TATATATACCATGTATAAAC
*
6741010 TATATATACCATGTTTAAAC
1 TATATATACCATGTATAAAC
6741030 TATA-ATAC
1 TATATATAC
6741038 TATATAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.45, C:0.11, G:0.04, T:0.40
Consensus pattern (20 bp):
TATATATACCATGTATAAAC
Found at i:6741116 original size:39 final size:37
Alignment explanation
Indices: 6741061--6741137 Score: 93
Period size: 39 Copynumber: 2.0 Consensus size: 37
6741051 TATGAACTAT
*
6741061 TGAACTATATAGAAACTACATAATTATATATAATTATATA
1 TGAACTATATAGAAACTACACAATT-TATAT--TTATATA
* *
6741101 TGAA-TATATATAAACTATACAATTTATATTTATATA
1 TGAACTATATAGAAACTACACAATTTATATTTATATA
6741137 T
1 T
6741138 TATGTATAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 8 0.24
38 5 0.15
39 17 0.50
40 4 0.12
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.42
Consensus pattern (37 bp):
TGAACTATATAGAAACTACACAATTTATATTTATATA
Found at i:6741158 original size:21 final size:22
Alignment explanation
Indices: 6741131--6741173 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
6741121 AATTTATATT
6741131 TATATATTATGTAT-AATTATAAA
1 TATATA-T-TGTATAAATTATAAA
6741154 TATATATTGTATAAATTATA
1 TATATATTGTATAAATTATA
6741174 TAGTTATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 8 0.42
23 6 0.32
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (22 bp):
TATATATTGTATAAATTATAAA
Found at i:6741187 original size:14 final size:14
Alignment explanation
Indices: 6741142--6741194 Score: 54
Period size: 15 Copynumber: 3.7 Consensus size: 14
6741132 ATATATTATG
6741142 TATAATTATAAATA
1 TATAATTATAAATA
*
6741156 TATATTGTATAAATTA
1 TATAAT-TATAAA-TA
* *
6741172 TATAGTTATTAATA
1 TATAATTATAAATA
6741186 TA-AATTATA
1 TATAATTATA
6741195 TAGTTTTTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
13 5 0.16
14 9 0.28
15 11 0.34
16 7 0.22
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (14 bp):
TATAATTATAAATA
Found at i:6741212 original size:25 final size:21
Alignment explanation
Indices: 6741163--6741208 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
6741153 ATATATATTG
6741163 TATAAATTATATAGTTATTAA
1 TATAAATTATATAGTTATTAA
* *
6741184 TATAAATTATATAGTTTTTTA
1 TATAAATTATATAGTTATTAA
6741205 TATA
1 TATA
6741209 TATATATGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (21 bp):
TATAAATTATATAGTTATTAA
Found at i:6741281 original size:20 final size:20
Alignment explanation
Indices: 6741249--6741327 Score: 88
Period size: 20 Copynumber: 3.8 Consensus size: 20
6741239 TATAAACTAC
*
6741249 ATACTATA-ATTATATTTAT
1 ATACTATATTTTATATTTAT
6741268 ATACTATATTTTATACTATTTAT
1 ATACTATA-TTT-TA-TATTTAT
*
6741291 ATAAACTATAGTTTATATTTAT
1 AT--ACTATATTTTATATTTAT
6741313 ATACTATATTTTATA
1 ATACTATATTTTATA
6741328 CTATTTATAT
Statistics
Matches: 51, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
19 8 0.16
20 12 0.24
21 1 0.02
22 11 0.22
23 11 0.22
24 2 0.04
25 6 0.12
ACGTcount: A:0.39, C:0.06, G:0.01, T:0.53
Consensus pattern (20 bp):
ATACTATATTTTATATTTAT
Found at i:6741291 original size:23 final size:23
Alignment explanation
Indices: 6741261--6741337 Score: 106
Period size: 23 Copynumber: 3.4 Consensus size: 23
6741251 ACTATAATTA
6741261 TATTTATATACTATATTTTATAC
1 TATTTATATACTATATTTTATAC
*
6741284 TATTTATATAAACTATA-GTT-TA-
1 TATTTATAT--ACTATATTTTATAC
6741306 TATTTATATACTATATTTTATAC
1 TATTTATATACTATATTTTATAC
6741329 TATTTATAT
1 TATTTATAT
6741338 GAACTGTAGT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
20 6 0.13
21 2 0.04
22 11 0.23
23 20 0.43
24 2 0.04
25 6 0.13
ACGTcount: A:0.36, C:0.06, G:0.01, T:0.56
Consensus pattern (23 bp):
TATTTATATACTATATTTTATAC
Found at i:6741311 original size:45 final size:45
Alignment explanation
Indices: 6741258--6741350 Score: 168
Period size: 45 Copynumber: 2.1 Consensus size: 45
6741248 CATACTATAA
6741258 TTATATTTATATACTATATTTTATACTATTTATATAAACTATAGT
1 TTATATTTATATACTATATTTTATACTATTTATATAAACTATAGT
* *
6741303 TTATATTTATATACTATATTTTATACTATTTATATGAACTGTAGT
1 TTATATTTATATACTATATTTTATACTATTTATATAAACTATAGT
6741348 TTA
1 TTA
6741351 CATATGAACT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.54
Consensus pattern (45 bp):
TTATATTTATATACTATATTTTATACTATTTATATAAACTATAGT
Found at i:6741399 original size:20 final size:20
Alignment explanation
Indices: 6741374--6741433 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
6741364 TATATAAATA
6741374 TATATACTAAGGTTGATATT
1 TATATACTAAGGTTGATATT
*
6741394 TATATA-TGAA--CT-ATAATT
1 TATATACT-AAGGTTGAT-ATT
6741412 TATATACTAAGGTTGATATT
1 TATATACTAAGGTTGATATT
6741432 TA
1 TA
6741434 CATATGAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
17 2 0.06
18 12 0.38
19 2 0.06
20 14 0.44
21 2 0.06
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (20 bp):
TATATACTAAGGTTGATATT
Found at i:6741412 original size:18 final size:18
Alignment explanation
Indices: 6741391--6741464 Score: 62
Period size: 18 Copynumber: 4.0 Consensus size: 18
6741381 TAAGGTTGAT
*
6741391 ATTTATATATGAACTATA
1 ATTTACATATGAACTATA
* *
6741409 ATTTATATACT-AAGGTTGATA
1 ATTTACATA-TGAA--CT-ATA
6741430 -TTTACATATGAACTATA
1 ATTTACATATGAACTATA
*
6741447 GTTTACATATGAACTATA
1 ATTTACATATGAACTATA
6741465 TATATAGTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 12
0.76 0.05 0.19
Matches are distributed among these distances:
17 3 0.06
18 29 0.62
19 2 0.04
20 10 0.21
21 3 0.06
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (18 bp):
ATTTACATATGAACTATA
Found at i:6741418 original size:38 final size:38
Alignment explanation
Indices: 6741374--6741451 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
6741364 TATATAAATA
*
6741374 TATATACTAAGGTTGATATTTATATATGAACTATAATT
1 TATATACTAAGGTTGATATTTACATATGAACTATAATT
*
6741412 TATATACTAAGGTTGATATTTACATATGAACTATAGTT
1 TATATACTAAGGTTGATATTTACATATGAACTATAATT
6741450 TA
1 TA
6741452 CATATGAACT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.38, C:0.06, G:0.12, T:0.44
Consensus pattern (38 bp):
TATATACTAAGGTTGATATTTACATATGAACTATAATT
Found at i:6741470 original size:24 final size:24
Alignment explanation
Indices: 6741443--6741520 Score: 72
Period size: 24 Copynumber: 3.2 Consensus size: 24
6741433 ACATATGAAC
6741443 TATAGTTTACATA-TGAACTATATA
1 TATAGTTTA-ATAGTGAACTATATA
*
6741467 TATAGTTTATTAGTGAACTATATA
1 TATAGTTTAATAGTGAACTATATA
*
6741491 CATTA-TTTATATAGT-ATACTATATAA
1 TA-TAGTTTA-ATAGTGA-ACTATAT-A
6741517 TATA
1 TATA
6741521 AACTATAGTT
Statistics
Matches: 45, Mismatches: 4, Indels: 9
0.78 0.07 0.16
Matches are distributed among these distances:
23 2 0.04
24 26 0.58
25 15 0.33
26 2 0.04
ACGTcount: A:0.41, C:0.06, G:0.08, T:0.45
Consensus pattern (24 bp):
TATAGTTTAATAGTGAACTATATA
Found at i:6741560 original size:27 final size:28
Alignment explanation
Indices: 6741522--6741582 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 28
6741512 TATAATATAA
*
6741522 ACTATAGTTTTATATTTATATACTACAT
1 ACTATAGTTTTAGATTTATATACTACAT
*
6741550 ACTATAG-TTTAGATTTATATACTATAT
1 ACTATAGTTTTAGATTTATATACTACAT
*
6741577 ATTATA
1 ACTATA
6741583 TATATAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 23 0.77
28 7 0.23
ACGTcount: A:0.38, C:0.08, G:0.05, T:0.49
Consensus pattern (28 bp):
ACTATAGTTTTAGATTTATATACTACAT
Found at i:6741708 original size:33 final size:33
Alignment explanation
Indices: 6741670--6741812 Score: 97
Period size: 33 Copynumber: 4.5 Consensus size: 33
6741660 CCCTAAACCC
*
6741670 TAAACTATACATTATATAATTTATTAGTATATA
1 TAAACTATACATTATATAATTCATTAGTATATA
* * *
6741703 TAAACTAT--A-GA-CT-A-T-A--GGTATATA
1 TAAACTATACATTATATAATTCATTAGTATATA
* *
6741727 TAAACTATACATTATACATAGTTCGTTAGTATATA
1 TAAACTATACATTAT--ATAATTCATTAGTATATA
* * * *
6741762 TAAACTATATACTATATAGTTCATTAGTATGTA
1 TAAACTATACATTATATAATTCATTAGTATATA
* *
6741795 TAAACTATATAGTATATA
1 TAAACTATACATTATATA
6741813 TAAACTAAAT
Statistics
Matches: 86, Mismatches: 13, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
24 15 0.17
26 2 0.02
27 2 0.02
28 1 0.01
29 1 0.01
30 2 0.02
31 1 0.01
32 1 0.01
33 41 0.48
35 20 0.23
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (33 bp):
TAAACTATACATTATATAATTCATTAGTATATA
Found at i:6741742 original size:24 final size:24
Alignment explanation
Indices: 6741696--6741742 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
6741686 TAATTTATTA
*
6741696 GTATATATAAACTATAGACTATAG
1 GTATATATAAACTATACACTATAG
*
6741720 GTATATATAAACTATACATTATA
1 GTATATATAAACTATACACTATA
6741743 CATAGTTCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.36
Consensus pattern (24 bp):
GTATATATAAACTATACACTATAG
Found at i:6741779 original size:18 final size:18
Alignment explanation
Indices: 6741753--6741856 Score: 80
Period size: 18 Copynumber: 6.1 Consensus size: 18
6741743 CATAGTTCGT
6741753 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
* *
6741771 TACTATATAGT--TC-AT-
1 TAGTATATA-TAAACTATA
*
6741786 TAGTATGTATAAACTATA
1 TAGTATATATAAACTATA
*
6741804 TAGTATATATAAACTAAA
1 TAGTATATATAAACTATA
**
6741822 TA-T-TATAT-AGTTCA-A
1 TAGTATATATAAACT-ATA
6741837 TAGTATATATAAACTATA
1 TAGTATATATAAACTATA
6741855 TA
1 TA
6741857 TTAATTTATT
Statistics
Matches: 65, Mismatches: 11, Indels: 20
0.68 0.11 0.21
Matches are distributed among these distances:
14 1 0.02
15 12 0.18
16 10 0.15
17 10 0.15
18 31 0.48
19 1 0.02
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.40
Consensus pattern (18 bp):
TAGTATATATAAACTATA
Found at i:6741808 original size:51 final size:51
Alignment explanation
Indices: 6741753--6741856 Score: 172
Period size: 51 Copynumber: 2.0 Consensus size: 51
6741743 CATAGTTCGT
* * *
6741753 TAGTATATATAAACTATATACTATATAGTTCATTAGTATGTATAAACTATA
1 TAGTATATATAAACTAAATACTATATAGTTCAATAGTATATATAAACTATA
*
6741804 TAGTATATATAAACTAAATATTATATAGTTCAATAGTATATATAAACTATA
1 TAGTATATATAAACTAAATACTATATAGTTCAATAGTATATATAAACTATA
6741855 TA
1 TA
6741857 TTAATTTATT
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.46, C:0.07, G:0.07, T:0.40
Consensus pattern (51 bp):
TAGTATATATAAACTAAATACTATATAGTTCAATAGTATATATAAACTATA
Found at i:6741813 original size:35 final size:34
Alignment explanation
Indices: 6741720--6741814 Score: 120
Period size: 33 Copynumber: 2.8 Consensus size: 34
6741710 TAGACTATAG
* * *
6741720 GTATATATAAACTATACATTATACATAGTTCGTTA
1 GTATATATAAACTATATA-TATATATAGTTCATTA
*
6741755 GTATATATAAACTATATA-CTATATAGTTCATTA
1 GTATATATAAACTATATATATATATAGTTCATTA
*
6741788 GTATGTATAAACTATATAGTATATATA
1 GTATATATAAACTATATA-TATATATA
6741815 AACTAAATAT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
33 29 0.56
35 23 0.44
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.41
Consensus pattern (34 bp):
GTATATATAAACTATATATATATATAGTTCATTA
Found at i:6742063 original size:20 final size:20
Alignment explanation
Indices: 6742007--6742093 Score: 88
Period size: 20 Copynumber: 4.3 Consensus size: 20
6741997 ATATGTAACC
*
6742007 TATAGTTTATAAACAATAGTT
1 TATA-TTTATAAACTATAGTT
**
6742028 TATA-TTAGTGTACTATAGTT
1 TATATTTA-TAAACTATAGTT
* *
6742048 TATATTTATAACCTATA-TA
1 TATATTTATAAACTATAGTT
6742067 TATAATTTATAAACTATAGTT
1 TAT-ATTTATAAACTATAGTT
6742088 TATATT
1 TATATT
6742094 AATGTACTAG
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
19 7 0.13
20 35 0.66
21 11 0.21
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.48
Consensus pattern (20 bp):
TATATTTATAAACTATAGTT
Found at i:6742102 original size:20 final size:20
Alignment explanation
Indices: 6742022--6742120 Score: 85
Period size: 20 Copynumber: 4.8 Consensus size: 20
6742012 TTTATAAACA
*
6742022 ATAGTTTATATTAGTGTACT
1 ATAGTTTATATTAATGTACT
* *
6742042 ATAGTTTATATTTAT-AACCT
1 ATAGTTTATATTAATGTA-CT
* * **
6742062 ATA-TATATAATTTATAAACT
1 ATAGTTTAT-ATTAATGTACT
6742082 ATAGTTTATATTAATGTACT
1 ATAGTTTATATTAATGTACT
6742102 AGATAGTTTATATTAATGT
1 --ATAGTTTATATTAATGT
6742121 TAATTATATT
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
19 5 0.08
20 37 0.57
21 6 0.09
22 17 0.26
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.48
Consensus pattern (20 bp):
ATAGTTTATATTAATGTACT
Found at i:6742180 original size:17 final size:17
Alignment explanation
Indices: 6742141--6742183 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
6742131 AACTATAATT
*
6742141 TATATTAATACAGTATA
1 TATATTAATACACTATA
6742158 -ATATTAATA-ACTATA
1 TATATTAATACACTATA
6742173 CTATATTAATA
1 -TATATTAATA
6742184 TTAATTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 5 0.22
16 9 0.39
17 9 0.39
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (17 bp):
TATATTAATACACTATA
Found at i:6742222 original size:64 final size:63
Alignment explanation
Indices: 6742110--6742270 Score: 163
Period size: 64 Copynumber: 2.5 Consensus size: 63
6742100 CTAGATAGTT
* * *
6742110 TATATTAATGTTAATTATATTAACTATAATT-TATATTAATACAGTATAATATTAATAAC-TATA
1 TATATTAATATTAATTATATTAACTAT-ATTATAAACTAATACAGTAT-A-ATT-ATAACATATA
6742173 -C
62 GC
6742174 TATATTAATATTAATTATATTAACTATAGTTATAAACT-ATACTA-TATAATTATAACATATAGT
1 TATATTAATATTAATTATATTAACTATA-TTATAAACTAATAC-AGTATAATTATAACATATAG-
*
6742237 T
63 C
*
6742238 TATATTAATATTAACTT-TATAAACTATATTATA
1 TATATTAATATTAA-TTATATTAACTATATTATA
6742271 TATTAATATT
Statistics
Matches: 85, Mismatches: 5, Indels: 15
0.81 0.05 0.14
Matches are distributed among these distances:
61 5 0.06
62 7 0.08
63 7 0.08
64 59 0.69
65 7 0.08
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (63 bp):
TATATTAATATTAATTATATTAACTATATTATAAACTAATACAGTATAATTATAACATATAGC
Found at i:6742226 original size:20 final size:20
Alignment explanation
Indices: 6742166--6742228 Score: 56
Period size: 20 Copynumber: 3.0 Consensus size: 20
6742156 TAATATTAAT
*
6742166 AACTATACTATATTAA-TATT
1 AACTATACTATA-TAATTATA
* * *
6742186 AATTATATTAACTATAGTTATA
1 AACTATACT-A-TATAATTATA
6742208 AACTATACTATATAATTATA
1 AACTATACTATATAATTATA
6742228 A
1 A
6742229 CATATAGTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
20 17 0.52
21 4 0.12
22 12 0.36
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.43
Consensus pattern (20 bp):
AACTATACTATATAATTATA
Found at i:6742273 original size:31 final size:30
Alignment explanation
Indices: 6742104--6742284 Score: 117
Period size: 31 Copynumber: 5.8 Consensus size: 30
6742094 AATGTACTAG
*
6742104 ATAGTT-TATATTAATGTTAATTATATTAACT
1 ATAGTTATATATTAATATTAATT-TA-TAACT
*
6742135 ATAATT-TATATTAATACAGTATAATATTAATAACT
1 ATAGTTATATATTAAT--A-T-TAAT-TT-ATAACT
*
6742170 ATA---CTATATTAATATTAATTATATTAACT
1 ATAGTTATATATTAATATTAATT-TA-TAACT
* *
6742199 ATAGTTATAAACTATACTATATAA-TTATAACAT
1 ATAGTTATATA-T-TAATAT-TAATTTATAAC-T
6742232 ATAGTT-TATATTAATATTAACTTTATAAACT
1 ATAGTTATATATTAATATTAA-TTTAT-AACT
6742263 ATA-TTATATATTAATATTAATT
1 ATAGTTATATATTAATATTAATT
6742285 ACAAATTATA
Statistics
Matches: 123, Mismatches: 7, Indels: 41
0.72 0.04 0.24
Matches are distributed among these distances:
28 2 0.02
29 16 0.13
30 10 0.08
31 38 0.31
32 13 0.11
33 19 0.15
34 7 0.06
35 16 0.13
36 2 0.02
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.47
Consensus pattern (30 bp):
ATAGTTATATATTAATATTAATTTATAACT
Found at i:6742281 original size:6 final size:6
Alignment explanation
Indices: 6742263--6742357 Score: 61
Period size: 6 Copynumber: 15.3 Consensus size: 6
6742253 TTTATAAACT
** * *
6742263 ATATTA TATATTA ATATTA ATTACAA ATTATAA ACTATTT ATATTA ATA-TA
1 ATATTA -ATATTA ATATTA A-TATTA A-TATTA A-TATTA ATATTA ATATTA
* *
6742314 A-GTTA ATATTA ATATTA AT-TATA ATATATA ATTTTA ATATTA AT
1 ATATTA ATATTA ATATTA ATAT-TA ATAT-TA ATATTA ATATTA AT
6742358 TATAAATGAT
Statistics
Matches: 72, Mismatches: 11, Indels: 11
0.77 0.12 0.12
Matches are distributed among these distances:
5 7 0.10
6 38 0.53
7 27 0.38
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (6 bp):
ATATTA
Found at i:6743072 original size:28 final size:28
Alignment explanation
Indices: 6743041--6743133 Score: 170
Period size: 28 Copynumber: 3.4 Consensus size: 28
6743031 GATTCCTCAG
6743041 GTTCTTTTCCATTTCCCTATCTCTCATT
1 GTTCTTTTCCATTTCCCTATCTCTCATT
6743069 GTTCTTTTCCATTTCCCTATCTCTCATT
1 GTTCTTTTCCATTTCCCTATCTCTCATT
6743097 GTTCTTTTCCATTTCCCTATCTCTCATT
1 GTTCTTTTCCATTTCCCTATCTCTCATT
*
6743125 CTT-TTTTCC
1 GTTCTTTTCC
6743134 GTATAAAATT
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
27 6 0.09
28 58 0.91
ACGTcount: A:0.10, C:0.32, G:0.03, T:0.55
Consensus pattern (28 bp):
GTTCTTTTCCATTTCCCTATCTCTCATT
Found at i:6745410 original size:13 final size:13
Alignment explanation
Indices: 6745391--6745428 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
6745381 TAATTTAGTG
6745391 ATTATAAATAA-A
1 ATTATAAATAAGA
6745403 ATTTATAATATAAGA
1 A-TTATAA-ATAAGA
6745418 ATTATAAATAA
1 ATTATAAATAA
6745429 TATAAAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 10 0.43
14 10 0.43
15 2 0.09
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (13 bp):
ATTATAAATAAGA
Found at i:6745438 original size:19 final size:19
Alignment explanation
Indices: 6745407--6745524 Score: 76
Period size: 19 Copynumber: 6.5 Consensus size: 19
6745397 AATAAAATTT
6745407 ATAATAT-AAGAATTATAA
1 ATAATATAAAGAATTATAA
6745425 ATAATATAAAGAATT-TGAA
1 ATAATATAAAGAATTAT-AA
* *
6745444 TTAATATAAA-AATCA-AA
1 ATAATATAAAGAATTATAA
*
6745461 TTTATAATATACA-AA-T-T--
1 ---ATAATATAAAGAATTATAA
6745478 ATAATAT-AAGAATTATAA
1 ATAATATAAAGAATTATAA
* *
6745496 AAAATATAAATAATTATAA
1 ATAATATAAAGAATTATAA
*
6745515 TTAATATAAA
1 ATAATATAAA
6745525 AACTAAATGT
Statistics
Matches: 77, Mismatches: 10, Indels: 25
0.69 0.09 0.22
Matches are distributed among these distances:
13 1 0.01
14 9 0.12
15 1 0.01
16 1 0.01
17 2 0.03
18 17 0.22
19 36 0.47
20 10 0.13
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (19 bp):
ATAATATAAAGAATTATAA
Found at i:6745481 original size:14 final size:14
Alignment explanation
Indices: 6745457--6745495 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
6745447 ATATAAAAAT
6745457 CAAATTTATAATATA
1 CAAA-TTATAATATA
6745472 CAAATTATAATATA
1 CAAATTATAATATA
6745486 -AGAATTATAA
1 CA-AATTATAA
6745496 AAAATATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.04
14 18 0.78
15 4 0.17
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (14 bp):
CAAATTATAATATA
Found at i:6745487 original size:71 final size:70
Alignment explanation
Indices: 6745392--6745526 Score: 211
Period size: 71 Copynumber: 1.9 Consensus size: 70
6745382 AATTTAGTGA
*
6745392 TTATAAATAAAATTTATAATATAAGAATTATAAATAATATAAAGAATT-TGAATTAATATAAAAA
1 TTATAAATAAAATTTATAATATAAGAATTATAAAAAATATAAAGAATTAT-AATTAATATAAAAA
6745456 TCAAAT
65 TCAAAT
*
6745462 TTATAATATACAAA-TTATAATATAAGAATTATAAAAAATATAAATAATTATAATTAATATAAAA
1 TTATAA-ATA-AAATTTATAATATAAGAATTATAAAAAATATAAAGAATTATAATTAATATAAAA
6745526 A
64 A
6745527 CTAAATGTAA
Statistics
Matches: 60, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
70 6 0.10
71 50 0.83
72 4 0.07
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.36
Consensus pattern (70 bp):
TTATAAATAAAATTTATAATATAAGAATTATAAAAAATATAAAGAATTATAATTAATATAAAAAT
CAAAT
Found at i:6746369 original size:5 final size:5
Alignment explanation
Indices: 6746352--6746391 Score: 55
Period size: 5 Copynumber: 8.2 Consensus size: 5
6746342 AGTCGAAACC
* *
6746352 ATTTT ATTAT ATTTT ATTTT -TTCT ATTTT ATTTT ATTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT A
6746392 AAGATTACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 3 0.10
5 27 0.90
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (5 bp):
ATTTT
Found at i:6746640 original size:17 final size:17
Alignment explanation
Indices: 6746617--6746657 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
6746607 AAATCAATCC
6746617 AACAAAAAAATAAAAAA
1 AACAAAAAAATAAAAAA
* * *
6746634 AATAAAAATATATAAAA
1 AACAAAAAAATAAAAAA
6746651 AACAAAA
1 AACAAAA
6746658 CAAAAAATCG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.83, C:0.05, G:0.00, T:0.12
Consensus pattern (17 bp):
AACAAAAAAATAAAAAA
Found at i:6747503 original size:21 final size:21
Alignment explanation
Indices: 6747474--6747530 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
6747464 AATTTGTTCT
* *
6747474 GAAGTACCTCATGTATGTCCC
1 GAAGGACCTCATATATGTCCC
** *
6747495 GAAGGACCTTGTATATGTTCC
1 GAAGGACCTCATATATGTCCC
*
6747516 GAAAGACCTCATATA
1 GAAGGACCTCATATA
6747531 ACCCTCGACT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (21 bp):
GAAGGACCTCATATATGTCCC
Found at i:6752589 original size:19 final size:20
Alignment explanation
Indices: 6752565--6752612 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
6752555 AAATGATTTG
*
6752565 ATTTTGAAAG-CAAAA-GCTA
1 ATTTTGAAAGTCAAAATG-AA
6752584 ATTTTGAAAGTCAAAATGAA
1 ATTTTGAAAGTCAAAATGAA
6752604 ATTTTGAAA
1 ATTTTGAAA
6752613 AATGATTTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 10 0.38
20 15 0.58
21 1 0.04
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.31
Consensus pattern (20 bp):
ATTTTGAAAGTCAAAATGAA
Found at i:6756375 original size:19 final size:19
Alignment explanation
Indices: 6756351--6756387 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
6756341 ATAACCAATA
*
6756351 AAATCGCAATGCGATCTCT
1 AAATCGCAACGCGATCTCT
6756370 AAATCGCAACGCGATCTC
1 AAATCGCAACGCGATCTC
6756388 CAGTATCGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (19 bp):
AAATCGCAACGCGATCTCT
Found at i:6756492 original size:41 final size:41
Alignment explanation
Indices: 6756432--6756642 Score: 386
Period size: 41 Copynumber: 5.1 Consensus size: 41
6756422 GATTTTGACT
* *
6756432 ATCGCAACGCAATTATGACTATCGCAACGCGATAATACATA
1 ATCGCAACGCGATTCTGACTATCGCAACGCGATAATACATA
6756473 ATCGCAACGCGATTCTGACTATCGCAACGCGATAATACATA
1 ATCGCAACGCGATTCTGACTATCGCAACGCGATAATACATA
6756514 ATCGCAACGCGATTCTGACTATCGCAACGCGATAATACATA
1 ATCGCAACGCGATTCTGACTATCGCAACGCGATAATACATA
6756555 ATCGCAACGCGATTCTGACTATCGCAACGCGATAATACATA
1 ATCGCAACGCGATTCTGACTATCGCAACGCGATAATACATA
* *
6756596 ATCGCAACGCGATTCTGACTATCGCAATGCGATAATACAAA
1 ATCGCAACGCGATTCTGACTATCGCAACGCGATAATACATA
6756637 ATCGCA
1 ATCGCA
6756643 TTAAAATCGC
Statistics
Matches: 166, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 166 1.00
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.22
Consensus pattern (41 bp):
ATCGCAACGCGATTCTGACTATCGCAACGCGATAATACATA
Found at i:6756720 original size:49 final size:50
Alignment explanation
Indices: 6756594--6756743 Score: 248
Period size: 52 Copynumber: 3.0 Consensus size: 50
6756584 CGATAATACA
6756594 TAATCGCAACGCGATTCTGACTATCGCAATGCGATAATACAAAATCGCAT
1 TAATCGCAACGCGATTCTGACTATCGCAATGCGATAATACAAAATCGCAT
* *
6756644 TAAAATCGCAACGTGATTCTGACTATCGCAATGCGATTATACAAAATCGCAT
1 T--AATCGCAACGCGATTCTGACTATCGCAATGCGATAATACAAAATCGCAT
*
6756696 T-ATCGCAATGCGATTCTGACTATCGCAATGCGATAATACAAAATCGCA
1 TAATCGCAACGCGATTCTGACTATCGCAATGCGATAATACAAAATCGCA
6756744 ATGCGATTTT
Statistics
Matches: 93, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
49 44 0.47
50 1 0.01
52 48 0.52
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (50 bp):
TAATCGCAACGCGATTCTGACTATCGCAATGCGATAATACAAAATCGCAT
Found at i:6757281 original size:19 final size:19
Alignment explanation
Indices: 6757178--6757282 Score: 93
Period size: 19 Copynumber: 5.2 Consensus size: 19
6757168 TATTTTGGAT
* *
6757178 TTTTCACTATCGCAACACT
1 TTTTAACTATCGCAACACA
* *
6757197 TTTTCACTATCACAACAATACA
1 TTTTAACTATCGCAAC---ACA
*
6757219 TTTTTCAAACTCTCGCAACACA
1 -TTTT--AACTATCGCAACACA
*
6757241 TTTTAACTATCGCATCACA
1 TTTTAACTATCGCAACACA
*
6757260 TTTTAACTATCGCAACATA
1 TTTTAACTATCGCAACACA
6757279 TTTT
1 TTTT
6757283 TCAAAATCGC
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
19 49 0.69
21 4 0.06
22 5 0.07
23 4 0.06
25 9 0.13
ACGTcount: A:0.32, C:0.27, G:0.04, T:0.37
Consensus pattern (19 bp):
TTTTAACTATCGCAACACA
Found at i:6761178 original size:27 final size:27
Alignment explanation
Indices: 6760971--6761171 Score: 222
Period size: 27 Copynumber: 7.4 Consensus size: 27
6760961 GGCCTCTTGT
* *
6760971 ATCAGCATGCCTCTGTTGGCCCCTAGG
1 ATCAGCATGCCTCTGTAGGTCCCTAGG
*
6760998 ATCAGCATGCCTCTGTAGGTCCATAGG
1 ATCAGCATGCCTCTGTAGGTCCCTAGG
6761025 ATCAGCATGCCTCTGTAGGTCCCTAGG
1 ATCAGCATGCCTCTGTAGGTCCCTAGG
*
6761052 ATCAGCATGCCTCCGTAGGTCCCTAGG
1 ATCAGCATGCCTCTGTAGGTCCCTAGG
* ** * * *
6761079 ATCAGCGTTTCTGTGTAGATCCCTTGG
1 ATCAGCATGCCTCTGTAGGTCCCTAGG
* * * * *
6761106 ATCAGCGTGTCTGTGTAGGTCCCTTGA
1 ATCAGCATGCCTCTGTAGGTCCCTAGG
* * * *
6761133 ATCTGCGTGCCTCTGTTGGTCCCTGGG
1 ATCAGCATGCCTCTGTAGGTCCCTAGG
*
6761160 ATCTGCATGCCT
1 ATCAGCATGCCT
6761172 ATGTTGGCTT
Statistics
Matches: 152, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.15, C:0.28, G:0.27, T:0.29
Consensus pattern (27 bp):
ATCAGCATGCCTCTGTAGGTCCCTAGG
Found at i:6768810 original size:29 final size:27
Alignment explanation
Indices: 6768778--6768839 Score: 97
Period size: 29 Copynumber: 2.2 Consensus size: 27
6768768 ATAATATATT
6768778 TTAATTTTTAAAATTAAATTATTAAACTA
1 TTAATTTTTAAAATTAAATTATTAAA--A
*
6768807 TTAATTTTTAAAATTAGATTATTAAAA
1 TTAATTTTTAAAATTAAATTATTAAAA
6768834 TTAATT
1 TTAATT
6768840 ATTTGATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 7 0.22
29 25 0.78
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (27 bp):
TTAATTTTTAAAATTAAATTATTAAAA
Found at i:6768840 original size:13 final size:13
Alignment explanation
Indices: 6768778--6768842 Score: 76
Period size: 14 Copynumber: 4.7 Consensus size: 13
6768768 ATAATATATT
*
6768778 TTAATTTTTAAAA
1 TTAATTATTAAAA
6768791 TTAAATTATTAAACTA
1 TT-AATTATTAAA--A
*
6768807 TTAATTTTTAAAA
1 TTAATTATTAAAA
6768820 TTAGATTATTAAAA
1 TTA-ATTATTAAAA
6768834 TTAATTATT
1 TTAATTATT
6768843 TGATATTTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
13 12 0.27
14 21 0.47
15 9 0.20
16 3 0.07
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (13 bp):
TTAATTATTAAAA
Found at i:6769056 original size:18 final size:18
Alignment explanation
Indices: 6769035--6769084 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
6769025 TCACAATTTG
6769035 ATAATTTTAAAAAATTAT
1 ATAATTTTAAAAAATTAT
** *
6769053 ATAAAATTAAAAAAATAT
1 ATAATTTTAAAAAATTAT
6769071 AT-ATTTTAAAAAAT
1 ATAATTTTAAAAAAT
6769085 AAAACACAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
17 9 0.35
18 17 0.65
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAATTTTAAAAAATTAT
Found at i:6771968 original size:21 final size:20
Alignment explanation
Indices: 6771882--6772039 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
6771872 AAATGACCAA
**
6771882 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
6771901 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
6771921 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
6771941 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
6771962 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
6771983 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
6772003 ACAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
6772024 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
6772040 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:6772068 original size:20 final size:20
Alignment explanation
Indices: 6772006--6772255 Score: 263
Period size: 20 Copynumber: 12.5 Consensus size: 20
6771996 CGATTTTACA
* ** *
6772006 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
6772026 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
6772046 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
6772066 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
6772086 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
**
6772106 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGTATCCGT
*
6772126 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
6772146 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
6772166 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
6772186 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
6772206 AAATCGCAACG-ATAATCCGT
1 AAATCGCAACGCGT-ATCCGT
* * *
6772226 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGTATCCGT
*
6772246 AAATCACAAC
1 AAATCGCAAC
6772256 ACTGAAATTT
Statistics
Matches: 196, Mismatches: 28, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
19 2 0.01
20 192 0.98
21 2 0.01
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.20
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:6772973 original size:24 final size:24
Alignment explanation
Indices: 6772934--6772980 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
6772924 AAATTTGGTC
6772934 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
6772958 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
6772981 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:6773171 original size:12 final size:12
Alignment explanation
Indices: 6773154--6773178 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6773144 ATATAATCCT
6773154 GAAGAAGAAAAA
1 GAAGAAGAAAAA
6773166 GAAGAAGAAAAA
1 GAAGAAGAAAAA
6773178 G
1 G
6773179 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:6775511 original size:33 final size:34
Alignment explanation
Indices: 6775460--6775690 Score: 237
Period size: 33 Copynumber: 6.7 Consensus size: 34
6775450 CGGAAATTAC
*
6775460 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
*
6775493 AATCCCAAC-ATGAAAATCGCAATGCGGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGC-GAAATGAA
*
6775527 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
*
6775560 AATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAG
1 AATCGCAA--CG--ATGAAAATCGCAATGCGAAATGAA
6775593 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAA--CG--ATGAAAATCGCAATGCGAAATGAA
*
6775631 AATCGCAACGA-GAGAATCGCAATGCGAAATGAA
1 AATCGCAACGATGAAAATCGCAATGCGAAATGAA
6775664 AATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAA--CG--ATGAAAATCGCAA
6775691 CGAGAGAATC
Statistics
Matches: 171, Mismatches: 9, Indels: 31
0.81 0.04 0.15
Matches are distributed among these distances:
32 1 0.01
33 95 0.56
34 31 0.18
35 7 0.04
36 4 0.02
37 3 0.02
38 30 0.18
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.13
Consensus pattern (34 bp):
AATCGCAACGATGAAAATCGCAATGCGAAATGAA
Found at i:6775565 original size:19 final size:19
Alignment explanation
Indices: 6775474--6775690 Score: 249
Period size: 19 Copynumber: 12.4 Consensus size: 19
6775464 GCAACGAGAG
6775474 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
6775493 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
6775507 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
6775527 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
6775541 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
6775560 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
6775579 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
6775593 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
6775612 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
6775631 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
6775645 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
6775664 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
6775683 AATCGCAA
1 AATCGCAA
6775691 CGAGAGAATC
Statistics
Matches: 169, Mismatches: 8, Indels: 42
0.77 0.04 0.19
Matches are distributed among these distances:
14 42 0.25
15 3 0.02
16 7 0.04
17 6 0.04
18 4 0.02
19 94 0.56
20 13 0.08
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:6775701 original size:33 final size:33
Alignment explanation
Indices: 6775560--6775712 Score: 159
Period size: 33 Copynumber: 4.5 Consensus size: 33
6775550 GCGAAATGAA
6775560 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
* *
6775593 AATCGCAATGCGAAATGAAAATCGCAATGCGA-
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
* * * *
6775625 AAT-GAAAAT-CGCAACGAGAGAATCGCAATGCGAAATGAA
1 AATCG-CAATGCGAAATGA-A-AATCGCAA--CG--A-GAG
6775664 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAACGAGAG
6775697 AATCGCAATGCGAAAT
1 AATCGCAATGCGAAAT
6775713 TATAAACGCA
Statistics
Matches: 98, Mismatches: 11, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
31 7 0.07
32 7 0.07
33 56 0.57
34 1 0.01
35 1 0.01
36 2 0.02
38 10 0.10
39 7 0.07
40 7 0.07
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.14
Consensus pattern (33 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAGAG
Found at i:6775728 original size:52 final size:52
Alignment explanation
Indices: 6775502--6775712 Score: 413
Period size: 52 Copynumber: 4.0 Consensus size: 52
6775492 AAATCCCAAC
6775502 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
6775555 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
6775607 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
6775659 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
6775711 AT
1 AT
6775713 TATAAACGCA
Statistics
Matches: 158, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
52 142 0.90
53 16 0.10
ACGTcount: A:0.46, C:0.17, G:0.23, T:0.14
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:6775831 original size:52 final size:53
Alignment explanation
Indices: 6775719--6775834 Score: 225
Period size: 53 Copynumber: 2.2 Consensus size: 53
6775709 AAATTATAAA
6775719 CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
1 CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
6775772 CGCATTGCGATTCTCTCGTTGCGATTTTCATTT-CGCATTGCGATTTTCATTT
1 CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
6775824 CGCATTGCGAT
1 CGCATTGCGAT
6775835 AGTCATTTTT
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 30 0.48
53 33 0.52
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.44
Consensus pattern (53 bp):
CGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCATTT
Found at i:6775842 original size:19 final size:19
Alignment explanation
Indices: 6775737--6775834 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
6775727 GATTCTCTCG
6775737 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
6775757 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
*
6775776 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
6775790 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
6775809 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
6775828 TTGCGAT
1 TTGCGAT
6775835 AGTCATTTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 6 0.08
16 7 0.10
17 7 0.10
19 36 0.51
20 15 0.21
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:6775960 original size:14 final size:14
Alignment explanation
Indices: 6775941--6775977 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
6775931 CATCAATTAC
6775941 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
6775955 ACAAATCATCTTTT
1 ACAAATCAACTTTT
6775969 ACAAATCAA
1 ACAAATCAA
6775978 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:6777939 original size:19 final size:19
Alignment explanation
Indices: 6777899--6778028 Score: 127
Period size: 19 Copynumber: 7.3 Consensus size: 19
6777889 TAGTTTACTT
* *
6777899 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
6777919 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
6777938 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
6777957 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
6777971 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
6777990 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
6778004 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
6778023 TCGCAA
1 TCGCAA
6778029 TTTTTGGTTT
Statistics
Matches: 91, Mismatches: 9, Indels: 21
0.75 0.07 0.17
Matches are distributed among these distances:
14 19 0.21
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 47 0.52
20 13 0.14
ACGTcount: A:0.46, C:0.28, G:0.17, T:0.08
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:6777978 original size:33 final size:32
Alignment explanation
Indices: 6777935--6778028 Score: 152
Period size: 33 Copynumber: 2.9 Consensus size: 32
6777925 CGCGAAACCA
**
6777935 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
6777967 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
6778000 AAGATCGCAACGCGAAACCAAAATCGCAA
1 AA-ATCGCAACGCGAAACCAAAATCGCAA
6778029 TTTTTGGTTT
Statistics
Matches: 58, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.03
33 56 0.97
ACGTcount: A:0.47, C:0.28, G:0.18, T:0.07
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:6778025 original size:52 final size:52
Alignment explanation
Indices: 6777899--6778028 Score: 142
Period size: 52 Copynumber: 2.5 Consensus size: 52
6777889 TAGTTTACTT
**
6777899 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
1 TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
* * *
6777951 T-G-AAAATCGCAACGACAGAATCGCAACGCGAAACCAAAATCGCAACGAC-AAGA
1 TCGCAACA-CGAAAC-ACAAAATCGCAACGCGAAACCAAAATCGCAACG-CGAA-A
*
6778004 TCGCAACGCGAAAC-CAAAATCGCAA
1 TCGCAACACGAAACACAAAATCGCAA
6778029 TTTTTGGTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
50 3 0.05
51 6 0.10
52 43 0.68
53 3 0.05
54 6 0.10
55 2 0.03
ACGTcount: A:0.46, C:0.28, G:0.17, T:0.08
Consensus pattern (52 bp):
TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
Found at i:6778232 original size:93 final size:93
Alignment explanation
Indices: 6778116--6778491 Score: 718
Period size: 93 Copynumber: 4.1 Consensus size: 93
6778106 ATGGATTGCA
6778116 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
6778180 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
6778208 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
6778273 TAGCAGAATTGGCAGCAACCGAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
6778301 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
6778366 TAGCAGAATTGGCAGCAACCCAACAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
*
6778394 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCAAAGTGTTAAAGAATACACAGTT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
*
6778459 TAGCAGAATTGGCAGCAACCGAATAAAT
66 TAGCAGAATTGGCAGCAACCGAACAAAT
6778487 TTACT
1 TTACT
6778492 AAGCAATCTA
Statistics
Matches: 279, Mismatches: 4, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
92 4 0.01
93 275 0.99
ACGTcount: A:0.46, C:0.19, G:0.12, T:0.22
Consensus pattern (93 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTT
TAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:6780217 original size:14 final size:14
Alignment explanation
Indices: 6780198--6780287 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
6780188 TTGAAATGAA
6780198 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
6780212 AATCGCAACGCGAAATGAC
1 AATCGCAA--CG--A-GAG
6780231 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
6780245 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
6780264 AATCGCAACGAGAG
1 AATCGCAACGAGAG
6780278 AATCGCAACG
1 AATCGCAACG
6780288 CGAAATGAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 20
0.72 0.05 0.23
Matches are distributed among these distances:
14 30 0.48
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 20 0.32
ACGTcount: A:0.43, C:0.23, G:0.24, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:6780235 original size:33 final size:33
Alignment explanation
Indices: 6780190--6780304 Score: 221
Period size: 33 Copynumber: 3.5 Consensus size: 33
6780180 TCTTTTGGTT
6780190 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
6780223 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
6780256 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
6780289 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
6780305 TGCGATTTTG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 80 1.00
ACGTcount: A:0.46, C:0.21, G:0.23, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:6780236 original size:19 final size:19
Alignment explanation
Indices: 6780212--6780309 Score: 90
Period size: 19 Copynumber: 5.7 Consensus size: 19
6780202 GCAACGAGAG
*
6780212 AATCGCAACGCGAAATGAC
1 AATCGCAACGCGAAATGAA
*
6780231 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
6780245 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
6780264 AATCGCAA--CG--A-GAG
1 AATCGCAACGCGAAATGAA
6780278 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
6780297 AATCGCAATGCGA
1 AATCGCAACGCGA
6780310 TTTTGGTTTC
Statistics
Matches: 64, Mismatches: 5, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
14 20 0.31
15 2 0.03
16 4 0.06
17 4 0.06
18 2 0.03
19 32 0.50
ACGTcount: A:0.44, C:0.22, G:0.23, T:0.10
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:6780338 original size:19 final size:19
Alignment explanation
Indices: 6780305--6780423 Score: 95
Period size: 21 Copynumber: 6.3 Consensus size: 19
6780295 AAAATCGCAA
** *
6780305 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTCATTTCTCGT
*
6780324 TGCGATTTTCATTTCGCGT
1 TGCGATTTTCATTTCTCGT
6780343 TGCGA--TTC---TCTCGT
1 TGCGATTTTCATTTCTCGT
6780357 TGCGATTTTCATTTCTCTCGT
1 TGCGATTTTCA-TT-TCTCGT
***
6780378 TGCGACAATCATTCTCTCGT
1 TGCGATTTTCATT-TCTCGT
6780398 TGCGATTTTCATTTATCTCGT
1 TGCGATTTTCA-TT-TCTCGT
6780419 TGCGA
1 TGCGA
6780424 CTCTTCTGCA
Statistics
Matches: 82, Mismatches: 10, Indels: 14
0.77 0.09 0.13
Matches are distributed among these distances:
14 10 0.12
16 3 0.04
17 3 0.04
19 22 0.27
20 17 0.21
21 27 0.33
ACGTcount: A:0.12, C:0.23, G:0.20, T:0.45
Consensus pattern (19 bp):
TGCGATTTTCATTTCTCGT
Found at i:6780404 original size:41 final size:41
Alignment explanation
Indices: 6780347--6780424 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
6780337 TCGCGTTGCG
*
6780347 ATTCTCTCGTTGCGATTTTCATTTCTCTCGTTGCGACAATC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAATC
6780388 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
1 ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGAC
6780425 TCTTCTGCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.14, C:0.26, G:0.15, T:0.45
Consensus pattern (41 bp):
ATTCTCTCGTTGCGATTTTCATTTATCTCGTTGCGACAATC
Found at i:6780409 original size:20 final size:21
Alignment explanation
Indices: 6780348--6780423 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
6780338 CGCGTTGCGA
6780348 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
***
6780369 TTCTCTCGTTGCGACAATCA-
1 TTCTCTCGTTGCGATTTTCAT
6780389 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGATTTTCAT
*
6780410 TTATCTCGTTGCGA
1 TTCTCTCGTTGCGA
6780424 CTCTTCTGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
20 17 0.36
21 30 0.64
ACGTcount: A:0.13, C:0.25, G:0.16, T:0.46
Consensus pattern (21 bp):
TTCTCTCGTTGCGATTTTCAT
Found at i:6780545 original size:33 final size:33
Alignment explanation
Indices: 6780503--6780573 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
6780493 AATACTAACT
*
6780503 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* *
6780536 TGAAAATCGCAACGACAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
6780569 TGAAA
1 TGAAA
6780574 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.18, G:0.23, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:6780981 original size:20 final size:20
Alignment explanation
Indices: 6780956--6781149 Score: 221
Period size: 20 Copynumber: 9.7 Consensus size: 20
6780946 CTTTAAATAT
6780956 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
6780976 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
6780998 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
6781017 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
6781037 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
6781057 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
6781077 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
6781097 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
6781117 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
6781137 CGCGTTGCGATTT
1 CGCGTTGCGATTT
6781150 TCCAAAATCG
Statistics
Matches: 147, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:6781143 original size:60 final size:60
Alignment explanation
Indices: 6780956--6781149 Score: 253
Period size: 60 Copynumber: 3.2 Consensus size: 60
6780946 CTTTAAATAT
**
6780956 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
6781017 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
6781077 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
6781137 CGCGTTGCGATTT
1 CGCGTTGCGATTT
6781150 TCCAAAATCG
Statistics
Matches: 112, Mismatches: 21, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
60 84 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:6781480 original size:18 final size:19
Alignment explanation
Indices: 6781445--6781482 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
6781435 AGATATTAGT
* *
6781445 TAATAATATTATTGATTTA
1 TAATAATATTAATCATTTA
6781464 TAATAA-ATTAATCATTTA
1 TAATAATATTAATCATTTA
6781482 T
1 T
6781483 CATTAATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (19 bp):
TAATAATATTAATCATTTA
Found at i:6781904 original size:16 final size:16
Alignment explanation
Indices: 6781883--6781914 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
6781873 GAATATTCTC
6781883 CTTGATTTTCTCCAAA
1 CTTGATTTTCTCCAAA
6781899 CTTGATTTTCTCCAAA
1 CTTGATTTTCTCCAAA
6781915 AACCCCTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (16 bp):
CTTGATTTTCTCCAAA
Found at i:6804745 original size:16 final size:16
Alignment explanation
Indices: 6804724--6804756 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
6804714 CATAAAAGAT
6804724 TCTTCCGATGGTAAAA
1 TCTTCCGATGGTAAAA
6804740 TCTTCCGATGGTAAAA
1 TCTTCCGATGGTAAAA
6804756 T
1 T
6804757 TGGATTGTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (16 bp):
TCTTCCGATGGTAAAA
Found at i:6815620 original size:33 final size:33
Alignment explanation
Indices: 6815578--6815672 Score: 190
Period size: 33 Copynumber: 2.9 Consensus size: 33
6815568 AGTTGACAAG
6815578 TTGGAAATTTCATCTTGGTTGGTGGCCAACTTA
1 TTGGAAATTTCATCTTGGTTGGTGGCCAACTTA
6815611 TTGGAAATTTCATCTTGGTTGGTGGCCAACTTA
1 TTGGAAATTTCATCTTGGTTGGTGGCCAACTTA
6815644 TTGGAAATTTCATCTTGGTTGGTGGCCAA
1 TTGGAAATTTCATCTTGGTTGGTGGCCAA
6815673 ACTTTGAACA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.39
Consensus pattern (33 bp):
TTGGAAATTTCATCTTGGTTGGTGGCCAACTTA
Found at i:6825698 original size:2 final size:2
Alignment explanation
Indices: 6825691--6825723 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6825681 TCCACAGTTG
6825691 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6825724 GTGTGTGTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6832743 original size:80 final size:83
Alignment explanation
Indices: 6832607--6832768 Score: 271
Period size: 80 Copynumber: 2.0 Consensus size: 83
6832597 ATGTTCGACT
6832607 TGAATTTTATCATCTAAAGGAGTACGAACCACTAGAGAACTTTAACTTTTCTAATTTGCAAAAGA
1 TGAATTTTATCATCTAAAGGAGTACGAACCACTAGAGAACTTTAACTTTTCTAATTTGCAAAAGA
6832672 CTAATAATC-AATACGGAC
66 CTAAT-ATCAAATACGGAC
6832690 TGAA-TTTATCATCT-AAGGAGTACGAACC-CTAGAGAAACTTT-ACTTTTCTAATTTGCAAAAG
1 TGAATTTTATCATCTAAAGGAGTACGAACCACTAGAG-AACTTTAACTTTTCTAATTTGCAAAAG
6832751 ACTAATATCAAATACGGA
65 ACTAATATCAAATACGGA
6832769 AATGAACAAA
Statistics
Matches: 77, Mismatches: 0, Indels: 7
0.92 0.00 0.08
Matches are distributed among these distances:
79 3 0.04
80 40 0.52
81 20 0.26
82 10 0.13
83 4 0.05
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.30
Consensus pattern (83 bp):
TGAATTTTATCATCTAAAGGAGTACGAACCACTAGAGAACTTTAACTTTTCTAATTTGCAAAAGA
CTAATATCAAATACGGAC
Found at i:6838902 original size:23 final size:24
Alignment explanation
Indices: 6838850--6838902 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
6838840 TCTGTTTTGA
*
6838850 ATTTTTAATAGTTTTTATTTATTT
1 ATTTTCAATAGTTTTTATTTATTT
6838874 ATTTTCAATAGTTTTT-TATTA-TT
1 ATTTTCAATAGTTTTTAT-TTATTT
6838897 ATTTTC
1 ATTTTC
6838903 GAAACAGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 9 0.33
24 18 0.67
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (24 bp):
ATTTTCAATAGTTTTTATTTATTT
Found at i:6841913 original size:31 final size:31
Alignment explanation
Indices: 6841875--6842031 Score: 217
Period size: 31 Copynumber: 5.0 Consensus size: 31
6841865 AGGGTCGAGG
* *
6841875 GTTTACCTATGTTCTTCGAGACATATGGATT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
6841906 GTTTACCTATGTTCTTCGGGACATATGGGACT
1 GTTTACCTATGTTCTTCGGGACATAT-GGACT
* *
6841938 GTTTACCTATGTTCTTCGGAACATACGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
6841969 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * *
6842000 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
6842031 G
1 G
6842032 GTCTTTCGGG
Statistics
Matches: 113, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
31 84 0.74
32 29 0.26
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:6841953 original size:63 final size:62
Alignment explanation
Indices: 6841875--6842020 Score: 222
Period size: 63 Copynumber: 2.3 Consensus size: 62
6841865 AGGGTCGAGG
* * *
6841875 GTTTACCTATGTTCTTC-GAGACATATGGATTGTTTACCTATGTTCTTCGGGACATATGGGACT
1 GTTTACCTATGTTCTTCGGA-ACATACGGACTGTTTACCTATGTCCTTCGGGACATAT-GGACT
6841938 GTTTACCTATGTTCTTCGGAACATACGGACTGTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGAACATACGGACTGTTTACCTATGTCCTTCGGGACATATGGACT
* *
6842000 GATTACCTAGGTTCTTCGGAA
1 GTTTACCTATGTTCTTCGGAA
6842021 TCTATGGACT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
62 24 0.31
63 51 0.66
64 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (62 bp):
GTTTACCTATGTTCTTCGGAACATACGGACTGTTTACCTATGTCCTTCGGGACATATGGACT
Found at i:6846159 original size:31 final size:31
Alignment explanation
Indices: 6846121--6846276 Score: 242
Period size: 31 Copynumber: 5.0 Consensus size: 31
6846111 AGGGTCGAGG
6846121 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
6846152 GTTTACCTATGTTCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* *
6846183 GTTTACCTATGTTCTTCGGAACATACGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
*
6846214 GTTTACCTATGTCCTTCGGGACATATGGACT
1 GTTTACCTATGTTCTTCGGGACATATGGACT
* * *
6846245 GATTACCTAGGTTCTTCGGAATC-TATGGACT
1 GTTTACCTATGTTCTTCGGGA-CATATGGACT
6846276 G
1 G
6846277 GTCCTTCGGG
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
31 114 0.99
32 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.37
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGACT
Found at i:6850078 original size:39 final size:39
Alignment explanation
Indices: 6850019--6850100 Score: 119
Period size: 39 Copynumber: 2.1 Consensus size: 39
6850009 ATCACTCGGA
* * *
6850019 GCATTACCCGGGGACTCATCCGCTACTAAAGGGAAAGTT
1 GCATTACCCGGGGACCCATCCGCTACCAAAGGGAAAGCT
* *
6850058 GCATTACCCGGTGACCCATCCTCTACCAAAGGGAAAGCT
1 GCATTACCCGGGGACCCATCCGCTACCAAAGGGAAAGCT
6850097 GCAT
1 GCAT
6850101 CTACTGTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (39 bp):
GCATTACCCGGGGACCCATCCGCTACCAAAGGGAAAGCT
Found at i:6857576 original size:14 final size:14
Alignment explanation
Indices: 6857557--6857594 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
6857547 CATACCTAAG
6857557 AGCATTGCATCCAT
1 AGCATTGCATCCAT
6857571 AGCATTGCATCCAT
1 AGCATTGCATCCAT
*
6857585 AGCATCGCAT
1 AGCATTGCAT
6857595 ATATGCATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (14 bp):
AGCATTGCATCCAT
Found at i:6857870 original size:46 final size:44
Alignment explanation
Indices: 6857768--6857883 Score: 121
Period size: 44 Copynumber: 2.6 Consensus size: 44
6857758 TTCAAAGCCA
* * *
6857768 ATTTCAACTTCACGACGAAGGATATTGGACTCGAAACATCCATG
1 ATTTCAACTTCACGACGAAGGATATCGGACTCCAAACATACATG
*
6857812 ATTTCAACTTCACGATGAAGGATATCGTG-CTCACAAACA-ACATTGG
1 ATTTCAACTTCACGACGAAGGATATCG-GACTC-CAAACATACA-T-G
*
6857858 ATTTCAACTTCAC-AGCGAATGATATC
1 ATTTCAACTTCACGA-CGAAGGATATC
6857884 CAATTCAAAG
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
44 30 0.49
45 8 0.13
46 23 0.38
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.27
Consensus pattern (44 bp):
ATTTCAACTTCACGACGAAGGATATCGGACTCCAAACATACATG
Found at i:6858025 original size:170 final size:170
Alignment explanation
Indices: 6857683--6858010 Score: 512
Period size: 170 Copynumber: 1.9 Consensus size: 170
6857673 TTTACTGAAG
* *
6857683 ATTGGATTTCAACTTTACAACGAAGGATATCCAATTGAAAGCTCAACTCCACAGCGAACAGGCTT
1 ATTGGATTTCAACTTCACAACGAAGGATATCCAATTCAAAGCTCAACTCCACAGCGAACAGGCTT
* * *
6857748 CCCAGTTTCATTCAAAGCCAATTTCAACTTCACGACGAAGGATATTGGACTCGAAACATCCATGA
66 CCCAGATTCATTCAAAGCCAATTTCAACTTCACGACGAAAGATATTGGACTCGAAACATCCACGA
*
6857813 TTTCAACTTCACGATGAAGGATATCGTGCTCACAAACAAC
131 TTTCAACTTCACGACGAAGGATATCGTGCTCACAAACAAC
* * * * **
6857853 ATTGGATTTCAACTTCACAGCGAATGATATCCAATTCAAAGCTCAACTTCACAGTGAATGGGCTT
1 ATTGGATTTCAACTTCACAACGAAGGATATCCAATTCAAAGCTCAACTCCACAGCGAACAGGCTT
* * *
6857918 CCCAGATTCATTCAGAGTCAATTTCAACTTCACGACGAAAGATATTTGACTCGAAACATCCACGA
66 CCCAGATTCATTCAAAGCCAATTTCAACTTCACGACGAAAGATATTGGACTCGAAACATCCACGA
*
6857983 TTTTAACTTCACGACGAAGGATATCGTG
131 TTTCAACTTCACGACGAAGGATATCGTG
6858011 TCCACCAGCA
Statistics
Matches: 142, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
170 142 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (170 bp):
ATTGGATTTCAACTTCACAACGAAGGATATCCAATTCAAAGCTCAACTCCACAGCGAACAGGCTT
CCCAGATTCATTCAAAGCCAATTTCAACTTCACGACGAAAGATATTGGACTCGAAACATCCACGA
TTTCAACTTCACGACGAAGGATATCGTGCTCACAAACAAC
Found at i:6858427 original size:83 final size:84
Alignment explanation
Indices: 6858259--6858509 Score: 330
Period size: 83 Copynumber: 3.0 Consensus size: 84
6858249 CTCAGCCCAG
* *
6858259 TTACAGCATAACTCAAGACGATAAGGGTTGTATGTCAACCAAGACCTTCGAGTTCGATTACATTC
1 TTACAGCATAACTCAAGGCGATAAGGGTTATATGTCAA-CAAGACCTTCGAGTTCGATTACATTC
* * *
6858324 AGCTCAAAGGCACAT--TAT
65 AGCTCAATGGCATATCAAAT
* * *
6858342 TTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAA-ACCCTCGAGTTCGATTACATTCA
1 TTACAGCATAACTCAAGGCGATAAGGGTTATATGTCAACAAGACCTTCGAGTTCGATTACATTCA
6858406 GCTCAATGGCATATCAAAT
66 GCTCAATGGCATATCAAAT
* * * *
6858425 TTACAGCATAGCTCAAGGCGATAAGGGCTATATGTCATCAAAGACCTTCGAGTTCGATTTCATTC
1 TTACAGCATAACTCAAGGCGATAAGGGTTATATGTCAAC-AAGACCTTCGAGTTCGATTACATTC
*
6858490 GGCTC-ATAGGCATATCAAAT
65 AGCTCAAT-GGCATATCAAAT
6858510 GCATGGGAGC
Statistics
Matches: 147, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
81 34 0.23
82 3 0.02
83 70 0.48
84 4 0.03
85 36 0.24
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.27
Consensus pattern (84 bp):
TTACAGCATAACTCAAGGCGATAAGGGTTATATGTCAACAAGACCTTCGAGTTCGATTACATTCA
GCTCAATGGCATATCAAAT
Found at i:6858823 original size:20 final size:20
Alignment explanation
Indices: 6858798--6858846 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
6858788 TGGCCACCAA
6858798 GCCTCCACTAGTCCTTGTCT
1 GCCTCCACTAGTCCTTGTCT
6858818 GCCTCCACTAGTCCTTGTCT
1 GCCTCCACTAGTCCTTGTCT
*
6858838 CCCTCCACT
1 GCCTCCACT
6858847 CACAATAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.10, C:0.45, G:0.12, T:0.33
Consensus pattern (20 bp):
GCCTCCACTAGTCCTTGTCT
Found at i:6859132 original size:23 final size:24
Alignment explanation
Indices: 6859080--6859132 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
6859070 TCTGTTTTGA
*
6859080 ATTTTTAATAGTTTTTATTTATTT
1 ATTTTCAATAGTTTTTATTTATTT
6859104 ATTTTCAATAGTTTTT-TATTA-TT
1 ATTTTCAATAGTTTTTAT-TTATTT
6859127 ATTTTC
1 ATTTTC
6859133 GAAACAGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 9 0.33
24 18 0.67
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (24 bp):
ATTTTCAATAGTTTTTATTTATTT
Found at i:6875191 original size:64 final size:64
Alignment explanation
Indices: 6875111--6875240 Score: 224
Period size: 64 Copynumber: 2.0 Consensus size: 64
6875101 ATAAAAAGGA
*
6875111 GAAAACAACTCTCGAGAAAACTCTCTAAATTTTCTAGTATTGAGAGAAAGCTAGAATGATTTGG
1 GAAAACAACTCTCGAGAAAACTCTATAAATTTTCTAGTATTGAGAGAAAGCTAGAATGATTTGG
* * *
6875175 GAAAATAACTCTCGAGAAAACTCTATAAATTTTTTAGTATTGGGAGAAAGCTAGAATGATTTGG
1 GAAAACAACTCTCGAGAAAACTCTATAAATTTTCTAGTATTGAGAGAAAGCTAGAATGATTTGG
6875239 GA
1 GA
6875241 TGATTTTGAA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (64 bp):
GAAAACAACTCTCGAGAAAACTCTATAAATTTTCTAGTATTGAGAGAAAGCTAGAATGATTTGG
Found at i:6883092 original size:20 final size:20
Alignment explanation
Indices: 6883051--6883093 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
6883041 GGCAAACTAC
* *
6883051 CATATTGATCACTTTTCTCT
1 CATATTCATCACTTTTCGCT
6883071 CATATTCATACACTTTT-GCT
1 CATATTCAT-CACTTTTCGCT
6883091 CAT
1 CAT
6883094 TAAATTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.23, C:0.26, G:0.05, T:0.47
Consensus pattern (20 bp):
CATATTCATCACTTTTCGCT
Found at i:6883263 original size:30 final size:30
Alignment explanation
Indices: 6883229--6883292 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
6883219 ACTTCTGAAT
**
6883229 TTTAGAT-AGAATACTATTTTGACCTTTAAC
1 TTTAGATGA-AATACTATTTTGACCCCTAAC
*
6883259 TTTAGATGAAATATTATTTTGACCCCTAAC
1 TTTAGATGAAATACTATTTTGACCCCTAAC
6883289 TTTA
1 TTTA
6883293 AATAATAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (30 bp):
TTTAGATGAAATACTATTTTGACCCCTAAC
Found at i:6884001 original size:176 final size:176
Alignment explanation
Indices: 6883707--6884061 Score: 710
Period size: 176 Copynumber: 2.0 Consensus size: 176
6883697 GTAAGATAAA
6883707 TATCGATACTCACTGGTAGTATCGATACTACTAGTTGTTTTCCAAATTGCTCAAATTTCAGAATG
1 TATCGATACTCACTGGTAGTATCGATACTACTAGTTGTTTTCCAAATTGCTCAAATTTCAGAATG
6883772 CAAATAGGTATCGATACTCAAAGGGGTATGATACTACTTTACACAGTAGTATCGATACCATGAAG
66 CAAATAGGTATCGATACTCAAAGGGGTATGATACTACTTTACACAGTAGTATCGATACCATGAAG
6883837 CATAATATCGATACTGGTCAAGCCCAACAGTCTTTAACGACTAGTT
131 CATAATATCGATACTGGTCAAGCCCAACAGTCTTTAACGACTAGTT
6883883 TATCGATACTCACTGGTAGTATCGATACTACTAGTTGTTTTCCAAATTGCTCAAATTTCAGAATG
1 TATCGATACTCACTGGTAGTATCGATACTACTAGTTGTTTTCCAAATTGCTCAAATTTCAGAATG
6883948 CAAATAGGTATCGATACTCAAAGGGGTATGATACTACTTTACACAGTAGTATCGATACCATGAAG
66 CAAATAGGTATCGATACTCAAAGGGGTATGATACTACTTTACACAGTAGTATCGATACCATGAAG
6884013 CATAATATCGATACTGGTCAAGCCCAACAGTCTTTAACGACTAGTT
131 CATAATATCGATACTGGTCAAGCCCAACAGTCTTTAACGACTAGTT
6884059 TAT
1 TAT
6884062 TTAAATATTA
Statistics
Matches: 179, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
176 179 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (176 bp):
TATCGATACTCACTGGTAGTATCGATACTACTAGTTGTTTTCCAAATTGCTCAAATTTCAGAATG
CAAATAGGTATCGATACTCAAAGGGGTATGATACTACTTTACACAGTAGTATCGATACCATGAAG
CATAATATCGATACTGGTCAAGCCCAACAGTCTTTAACGACTAGTT
Found at i:6885648 original size:22 final size:23
Alignment explanation
Indices: 6885601--6885661 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 23
6885591 TAATTATTAA
* *
6885601 AATATTTAAAAT-ATAT-TTATT
1 AATATTTATAATAATATAATATT
6885622 AATATTTATAATAATATAATATT
1 AATATTTATAATAATATAATATT
* *
6885645 -ATATTTTTAATATTATA
1 AATATTTATAATAATATA
6885662 TAAAATAATC
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 11 0.32
22 19 0.56
23 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
AATATTTATAATAATATAATATT
Found at i:6885677 original size:31 final size:32
Alignment explanation
Indices: 6885612--6885690 Score: 92
Period size: 31 Copynumber: 2.5 Consensus size: 32
6885602 ATATTTAAAA
6885612 TATATTTATTAATATTTATAATAATATAATAT
1 TATATTTATTAATATTTATAATAATATAATAT
*
6885644 TATATTT-TTAATA-TTAT-ATAAAATAATCAAT
1 TATATTTATTAATATTTATAATAATATAAT--AT
*
6885675 TATATTATAATAATAT
1 TATATT-TATTAATAT
6885691 AAGATATTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
29 9 0.22
30 4 0.10
31 14 0.35
32 8 0.20
33 5 0.12
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (32 bp):
TATATTTATTAATATTTATAATAATATAATAT
Found at i:6885745 original size:28 final size:28
Alignment explanation
Indices: 6885714--6885777 Score: 85
Period size: 28 Copynumber: 2.2 Consensus size: 28
6885704 TTTATTTCAA
* *
6885714 TAATATAT-AATAATTTTTTTTATATATT
1 TAATA-ATGAATAATATTATTTATATATT
6885742 TAATAATGAATAATATTATTTATATATT
1 TAATAATGAATAATATTATTTATATATT
6885770 TCAATAAT
1 T-AATAAT
6885778 ATTTTAGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 2 0.06
28 24 0.75
29 6 0.19
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (28 bp):
TAATAATGAATAATATTATTTATATATT
Found at i:6885970 original size:20 final size:20
Alignment explanation
Indices: 6885945--6886014 Score: 122
Period size: 20 Copynumber: 3.5 Consensus size: 20
6885935 TTTCCAGATG
6885945 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
6885965 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
* *
6885985 TTTTACAGAAATGTAATTAA
1 TTTTCCAGAAATGTAATTCA
6886005 TTTTCCAGAA
1 TTTTCCAGAA
6886015 TTCAAATTCC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40
Consensus pattern (20 bp):
TTTTCCAGAAATGTAATTCA
Found at i:6886023 original size:40 final size:40
Alignment explanation
Indices: 6885945--6886023 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
6885935 TTTCCAGATG
* * **
6885945 TTTTCCAGAAATGTAATTCATTTTCCAGAAATGTAATTCA
1 TTTTACAGAAATGTAATTAATTTTCCAGAAATCAAATTCA
*
6885985 TTTTACAGAAATGTAATTAATTTTCCAGAATTCAAATTC
1 TTTTACAGAAATGTAATTAATTTTCCAGAAATCAAATTC
6886024 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.37, C:0.14, G:0.09, T:0.41
Consensus pattern (40 bp):
TTTTACAGAAATGTAATTAATTTTCCAGAAATCAAATTCA
Found at i:6886033 original size:15 final size:15
Alignment explanation
Indices: 6886007--6886078 Score: 119
Period size: 15 Copynumber: 4.9 Consensus size: 15
6885997 GTAATTAATT
6886007 TTCCAG-AATTCAAA
1 TTCCAGTAATTCAAA
**
6886021 TTCCAGTAATTCATT
1 TTCCAGTAATTCAAA
6886036 TTCCAGTAATTCAAA
1 TTCCAGTAATTCAAA
6886051 TTCCAGTAATTCAAA
1 TTCCAGTAATTCAAA
6886066 TTCCAGTAATTCA
1 TTCCAGTAATTCA
6886079 TTTTCTGGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
14 6 0.11
15 47 0.89
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (15 bp):
TTCCAGTAATTCAAA
Found at i:6886049 original size:30 final size:30
Alignment explanation
Indices: 6885997--6886078 Score: 130
Period size: 30 Copynumber: 2.8 Consensus size: 30
6885987 TTACAGAAAT
*
6885997 GTAATTAATTTTCCAG-AATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
6886026 GTAATTCATTTTCCAGTAATTCAAATTCCA
1 GTAATTCATTTTCCAGTAATTCAAATTCCA
**
6886056 GTAATTCAAATTCCAGTAATTCA
1 GTAATTCATTTTCCAGTAATTCA
6886079 TTTTCTGGAA
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
29 15 0.31
30 34 0.69
ACGTcount: A:0.37, C:0.18, G:0.07, T:0.38
Consensus pattern (30 bp):
GTAATTCATTTTCCAGTAATTCAAATTCCA
Found at i:6886185 original size:19 final size:21
Alignment explanation
Indices: 6886160--6886217 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 21
6886150 ATATACTAAA
6886160 ATATATAAATATTAAACA-AT
1 ATATATAAATATTAAACATAT
*
6886180 -TATAT-AATATCTACACATAT
1 ATATATAAATAT-TAAACATAT
6886200 AATATATATAATATTAAA
1 -ATATATA-AATATTAAA
6886218 ATTTATCATC
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
18 5 0.17
19 10 0.33
20 2 0.07
22 5 0.17
23 3 0.10
24 5 0.17
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATATAAATATTAAACATAT
Found at i:6892081 original size:139 final size:139
Alignment explanation
Indices: 6891831--6892106 Score: 516
Period size: 139 Copynumber: 2.0 Consensus size: 139
6891821 AAACTGTGGC
6891831 AAATAAAAACTTTAAATTCAAAGAGCTGCCTTATGCCAATGTTGGTTCCAAAAACTCTTGGATGG
1 AAATAAAAACTTTAAATTCAAAGAGCTGCCTTATGCCAATGTTGGTTCCAAAAACTCTTGGATGG
6891896 TTTGACTTGTTTTACTAACACAATATAGCTTTTAGTAGTTGTCAGCTATCATTATTTATTTCTAC
66 TTTGACTTGTTTTACTAACACAATATAGCTTTTAGTAGTTGTCAGCTATCATTATTTATTTCTAC
6891961 AAGAGCTTT
131 AAGAGCTTT
* * *
6891970 AAATAAGAACTTTATATTCAAAGAGCTGCCTTATGCCGATGTTGGTTCCAAAAACTCTTGGATGG
1 AAATAAAAACTTTAAATTCAAAGAGCTGCCTTATGCCAATGTTGGTTCCAAAAACTCTTGGATGG
*
6892035 TTTGACTTGTTTTACTAACACAATATATCTTTTAGTAGTTGTCAGCTATCATTATTTATTTCTAC
66 TTTGACTTGTTTTACTAACACAATATAGCTTTTAGTAGTTGTCAGCTATCATTATTTATTTCTAC
6892100 AAGAGCT
131 AAGAGCT
6892107 GCCTTATGCT
Statistics
Matches: 133, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
139 133 1.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (139 bp):
AAATAAAAACTTTAAATTCAAAGAGCTGCCTTATGCCAATGTTGGTTCCAAAAACTCTTGGATGG
TTTGACTTGTTTTACTAACACAATATAGCTTTTAGTAGTTGTCAGCTATCATTATTTATTTCTAC
AAGAGCTTT
Found at i:6905445 original size:25 final size:26
Alignment explanation
Indices: 6905394--6905445 Score: 63
Period size: 25 Copynumber: 2.0 Consensus size: 26
6905384 AAGCTTCAGG
* *
6905394 TTCTACATCTTATTTTCTTCTTTTTT
1 TTCTACATCTTATTTCCTTCTTGTTT
6905420 TTCTA-ATCTT-TTTCCTTCATTGTTT
1 TTCTACATCTTATTTCCTTC-TTGTTT
6905445 T
1 T
6905446 GGGATCCTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 7 0.30
25 11 0.48
26 5 0.22
ACGTcount: A:0.12, C:0.19, G:0.02, T:0.67
Consensus pattern (26 bp):
TTCTACATCTTATTTCCTTCTTGTTT
Found at i:6913414 original size:36 final size:36
Alignment explanation
Indices: 6913343--6913415 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 36
6913333 GTTGGAAAAT
* *
6913343 ATTTATATATTTCTTTAAAAAATTTAAATTCATAAA
1 ATTTATATATTTCTTTAAAAAATTAAAAATCATAAA
* *
6913379 ATTTATATACTTTTTTTACAAAATTAAAAAT-ATAAA
1 ATTTATATA-TTTCTTTAAAAAATTAAAAATCATAAA
6913415 A
1 A
6913416 AAAGTTTAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 15 0.47
37 17 0.53
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.45
Consensus pattern (36 bp):
ATTTATATATTTCTTTAAAAAATTAAAAATCATAAA
Found at i:6914342 original size:22 final size:22
Alignment explanation
Indices: 6914317--6914368 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
6914307 TCGGATCGAA
*
6914317 TCTCGGGTGGAGGATTCCTAAT
1 TCTCGGATGGAGGATTCCTAAT
* *
6914339 TCTCGAATGGATGATTCCTAAT
1 TCTCGGATGGAGGATTCCTAAT
6914361 TCTCGGAT
1 TCTCGGAT
6914369 TGGGTCGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35
Consensus pattern (22 bp):
TCTCGGATGGAGGATTCCTAAT
Found at i:6914735 original size:64 final size:64
Alignment explanation
Indices: 6914609--6914728 Score: 222
Period size: 64 Copynumber: 1.9 Consensus size: 64
6914599 TATGTTATAT
* *
6914609 CATTTAGCCGTAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATAAAATAGA
1 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATAAAATAGA
6914673 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAAT
1 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAAT
6914729 GTAATAGGTA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.32
Consensus pattern (64 bp):
CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATAAAATAGA
Found at i:6915215 original size:200 final size:197
Alignment explanation
Indices: 6914753--6915271 Score: 688
Period size: 200 Copynumber: 2.6 Consensus size: 197
6914743 TTATATTACT
* *
6914753 TATTTTCTAACTAAACCGGTATATTTATACCGGTAACATT-AAAATTTACCTATTACATTATAAT
1 TATTTTCTAA-TAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAAT
* *
6914817 TATTGGTTTCGATGTTTTTGGGATCGATACAATTT-TAAATGTATCAACACTTTATGTGTGCACC
65 TATTGGTTTCGATGTTTTTGGGATCGATA-ATTTTATAAATGTATCGACACTTTATGTGTGCACC
* * *
6914881 TCGTTGTGCATTCATTCTGGAAAAAAATATCGACACAAACTTAAAAAGTGTCGATACATTATGTA
129 ACGTTGGGCATTAATTCTGGAAAAAAATATCGACACAAACTTAAAAAGTGTCGATACATTATGTA
6914946 GACC
194 GACC
* * * *
6914950 TATTTTCTCATAAAAACC-ATATATTTCTACCGGGTACATTGTAAATTTACCTATTACATTATAA
1 TATTTTCT-A-ATAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAA
* *
6915014 TTATCGGTTTCGATGTTTTTGGGATCGATATTTTTTATAAATGTATCGACACTTTATGTGTGCAC
64 TTATTGGTTTCGATGTTTTTGGGATCGATA-ATTTTATAAATGTATCGACACTTTATGTGTGCAC
* * *
6915079 CACGTTTGGGCATTAATTCTGGACAAAAAGTATCGACACAAA-TTCCATAAGTGTCGATACATTA
128 CACG-TTGGGCATTAATTCTGGA-AAAAAATATCGACACAAACTT-AAAAAGTGTCGATACATTA
*
6915143 TGTTGACC
190 TGTAGACC
* * *
6915151 TGTTTTCTAATTAACCGGTATATTTATACCGGTTACATTGTTAATTTACCTATTACATTATAATT
1 TATTTTCTAATAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATT
* * * * * *
6915216 ATTGGTTTCAATATTTTTGGGGTCAATACTTTTAGGAAATGTATCGACAC-TTATGT
66 ATTGGTTTCGATGTTTTTGGGATCGATAATTTTA-TAAATGTATCGACACTTTATGT
6915272 TTACCTATTC
Statistics
Matches: 281, Mismatches: 32, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
197 26 0.09
198 60 0.21
199 47 0.17
200 100 0.36
201 48 0.17
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.39
Consensus pattern (197 bp):
TATTTTCTAATAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATT
ATTGGTTTCGATGTTTTTGGGATCGATAATTTTATAAATGTATCGACACTTTATGTGTGCACCAC
GTTGGGCATTAATTCTGGAAAAAAATATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGA
CC
Found at i:6915716 original size:19 final size:19
Alignment explanation
Indices: 6915689--6915738 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
6915679 ATTACATTCA
6915689 TATACAAAATTATAAATCG
1 TATACAAAATTATAAATCG
* *
6915708 TATAGAAAATTATAAATCT
1 TATACAAAATTATAAATCG
6915727 TATACAAAATTA
1 TATACAAAATTA
6915739 ACCTTACATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.34
Consensus pattern (19 bp):
TATACAAAATTATAAATCG
Found at i:6917304 original size:18 final size:18
Alignment explanation
Indices: 6917281--6917318 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
6917271 TCCTCCTCAT
6917281 TTCCTCCATATTTTCTTC
1 TTCCTCCATATTTTCTTC
*
6917299 TTCCTCCATCTTTTCTTC
1 TTCCTCCATATTTTCTTC
6917317 TT
1 TT
6917319 AATATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.08, C:0.34, G:0.00, T:0.58
Consensus pattern (18 bp):
TTCCTCCATATTTTCTTC
Found at i:6920538 original size:180 final size:182
Alignment explanation
Indices: 6920060--6920781 Score: 1108
Period size: 182 Copynumber: 4.0 Consensus size: 182
6920050 GTGGTGCTTT
* * * *
6920060 ACCAGTTTTATCATATTTTTACATGTTATATTGTTGTGGATCGATACATTTTTATAAAGTATAGA
1 ACCAGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGA
* *
6920125 CACTTTATAAGCACCATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAATT
66 CACTTTATAGGCGCCATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAATT
* * * *
6920190 ATCGACACTTTCAACATATCCGGTAGTGCTTTACCGGTTTTGTCATATCGAG
131 ATCGACACTTTCAACATATCTGGTAGCGCTTTACCGATTTTGTCATTTCGAG
* * *
6920242 ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCAACACATTTTTATAAAGTATCGA
1 ACCAGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGA
6920307 CACTTTATAGGCGCCATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAATT
66 CACTTTATAGGCGCCATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAATT
6920372 ATCGACACTTTCAACATATCTGGTAGCGCTTTACCGATTTT-TCATTTCGAG
131 ATCGACACTTTCAACATATCTGGTAGCGCTTTACCGATTTTGTCATTTCGAG
* *
6920423 ACCAGTTTTGTCATA-TTTTACCTGTTATATGGTTATGGATCGATACATTTTTATCAAGTATCGA
1 ACCAGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGA
* * ** * *
6920487 CACTTTATAGGTGCTATTACTTATTTTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAAGT
66 CACTTTATAGGCGCCATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAATT
*
6920552 ATCGACACTTTCAACATATCTGGTGGCGCTTTACCGATTTTGTCATTTCGAG
131 ATCGACACTTTCAACATATCTGGTAGCGCTTTACCGATTTTGTCATTTCGAG
* * *
6920604 ACCGGTTTTGTCATATTTTTACTTGTTATATTTTTATGGATCGATACATTTTTTATAAAGTATCG
1 ACCAGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACA-TTTTTATAAAGTATCG
* * * *
6920669 ACATTTTATAGGCGCTATTAATTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTAT-TTAAAT
65 ACACTTTATAGGCGCCATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAAT
* * *
6920733 CTAATCGATACTTTCAACATATCTGGTAGCACTTTACCGGTTTTGTCAT
130 -T-ATCGACACTTTCAACATATCTGGTAGCGCTTTACCGATTTTGTCAT
6920782 ATTTTTACCT
Statistics
Matches: 495, Mismatches: 40, Indels: 8
0.91 0.07 0.01
Matches are distributed among these distances:
180 144 0.29
181 47 0.09
182 193 0.39
183 69 0.14
184 42 0.08
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.42
Consensus pattern (182 bp):
ACCAGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGA
CACTTTATAGGCGCCATTACTGCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAATT
ATCGACACTTTCAACATATCTGGTAGCGCTTTACCGATTTTGTCATTTCGAG
Found at i:6920875 original size:163 final size:164
Alignment explanation
Indices: 6920604--6921168 Score: 559
Period size: 163 Copynumber: 3.3 Consensus size: 164
6920594 TCATTTCGAG
* * * *
6920604 ACCGGTTTTGTCATATTTTTACTTGTTATATTTTTATGGATCGATACATTTTTTATAAAGTATCG
1 ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGAATCGATACATTTTTTACAAAGTATCG
* *
6920669 ACATTTTATAGGCGCTATTAATTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATTTAAATC
66 ACACTTTATAGACGCTATTAATTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATTTAAATC
6920734 TAATCGATACTTTCAACATATCTGGTAGCACTTT
131 TAATCGATACTTTCAACATATCTGGTAGCACTTT
6920768 ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGAATCGATACA-TTTTTACAAAGTATCG
1 ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGAATCGATACATTTTTTACAAAGTATCG
* * *
6920832 ACACTTTATAGACGCTATTACTTCTTCTGTTTTAAATTCCAAAAGTGTCGATATTTATTTAAATC
66 ACACTTTATAGACGCTATTAATTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATTTAAATC
* * **
6920897 TAATCGATACTTTCAATATATTTGGTAGCGTTTT
131 TAATCGATACTTTCAACATATCTGGTAGCACTTT
** * * *
6920931 ACCGGTTTTGTCAT-TTTGAGACCGATTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGA
1 ACCGGTTTTGTCATATTT-TTACC-----TGTTATATTGTTA--TG--A-ATCG--AT--A-C-A
* * * * * * * * *
6920995 TACATTTT-TATAA-AAT--ATCGACACTT-TATAGGCCTATTACTTCTTCTATTTTAAATTTCA
49 T--TTTTTACA-AAGTATCGA-C-AC-TTTATAGACG-CTATTAATTCTTCTCTTTTAAA-TTCC
* *
6921055 AAAAGTGTCGATACTTATTTAAATCTAATCGATACTTTCAACATATCCGGTAGCGCTTT
106 AAAAGTGTCGATACTTATTTAAATCTAATCGATACTTTCAACATATCTGGTAGCACTTT
** * *
6921114 ACCGGTTTTGTCATATTTTTACCTGTTATATTACTATGGATCAATACATTTTTTA
1 ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGAATCGATACATTTTTTA
6921169 TTTGTATAAA
Statistics
Matches: 333, Mismatches: 40, Indels: 54
0.78 0.09 0.13
Matches are distributed among these distances:
162 3 0.01
163 122 0.37
164 45 0.14
165 4 0.01
167 2 0.01
168 12 0.04
169 1 0.00
170 2 0.01
171 2 0.01
172 1 0.00
173 5 0.02
175 2 0.01
176 2 0.01
177 1 0.00
178 11 0.03
179 2 0.01
180 1 0.00
181 9 0.03
182 29 0.09
183 74 0.22
184 3 0.01
ACGTcount: A:0.28, C:0.15, G:0.12, T:0.45
Consensus pattern (164 bp):
ACCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGAATCGATACATTTTTTACAAAGTATCG
ACACTTTATAGACGCTATTAATTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATTTAAATC
TAATCGATACTTTCAACATATCTGGTAGCACTTT
Found at i:6921071 original size:346 final size:346
Alignment explanation
Indices: 6920427--6921166 Score: 1148
Period size: 346 Copynumber: 2.1 Consensus size: 346
6920417 TTCGAGACCA
*
6920427 GTTTTGTCATA-TTTTACCTGTTATATGGTTATGGATCGATACATTTTTATCAAGTATCGACACT
1 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATCAAGTATCGACACT
** * *
6920491 TTATAGGTGCTATTACTTATTTTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAAGTATCG
66 TTATAGACGCTATTACTTATTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAACTATCG
* *
6920556 ACACTTTCAACATATCTGGTGGCGCTTTACCGATTTTGTCATTTCGAGACCGGTTTTGTCATATT
131 ACACTTTCAACATATCTGGTAGCGCTTTACCGATTTTGTCATTTCGAGACCGATTTTGTCATATT
* * * *
6920621 TTTACTTGTTATATTTTTATGGATCGATACATTTTTTATAAAGTATCGACATTTTATAGGCGCTA
196 TTTACCTGTTATATTGTTATGGATCGATACATTTTTTATAAAATATCGACACTTTATAGGCGCTA
* *
6920686 TTAATTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATTTAAATCTAATCGATACTTTCAAC
261 TTAATTCTTCTATTTTAAATTCAAAAAGTGTCGATACTTATTTAAATCTAATCGATACTTTCAAC
*
6920751 ATATCTGGTAGCACTTTACCG
326 ATATCCGGTAGCACTTTACCG
*
6920772 GTTTTGTCATATTTTTACCTGTTATATTGTTATGAATCGATACATTTTTA-CAAAGTATCGACAC
1 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATC-AAGTATCGACAC
* * *
6920836 TTTATAGACGCTATTACTTCTTCTGTTTTAAATTCCAAAAGTGTCGATATTTAT-TTAAATCTAA
65 TTTATAGACGCTATTACTTATTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAA-CT-A
* * * * * *
6920900 TCGATACTTTCAATATATTTGGTAGCGTTTTACCGGTTTTGTCATTTTGAGACCGATTTTGTCAT
128 TCGACACTTTCAACATATCTGGTAGCGCTTTACCGATTTTGTCATTTCGAGACCGATTTTGTCAT
6920965 ATTTTTACCTGTTATATTGTTATGGATCGATACA-TTTTTATAAAATATCGACACTTTATAGGC-
193 ATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTATAAAATATCGACACTTTATAGGCG
*
6921028 CTATTACTTCTTCTATTTTAAATTTCAAAAAGTGTCGATACTTATTTAAATCTAATCGATACTTT
258 CTATTAATTCTTCTATTTTAAA-TTCAAAAAGTGTCGATACTTATTTAAATCTAATCGATACTTT
*
6921093 CAACATATCCGGTAGCGCTTTACCG
322 CAACATATCCGGTAGCACTTTACCG
** *
6921118 GTTTTGTCATATTTTTACCTGTTATATTACTATGGATCAATACATTTTT
1 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
6921167 TATTTGTATA
Statistics
Matches: 360, Mismatches: 30, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
345 37 0.10
346 233 0.65
347 90 0.25
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (346 bp):
GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATCAAGTATCGACACT
TTATAGACGCTATTACTTATTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAACTATCG
ACACTTTCAACATATCTGGTAGCGCTTTACCGATTTTGTCATTTCGAGACCGATTTTGTCATATT
TTTACCTGTTATATTGTTATGGATCGATACATTTTTTATAAAATATCGACACTTTATAGGCGCTA
TTAATTCTTCTATTTTAAATTCAAAAAGTGTCGATACTTATTTAAATCTAATCGATACTTTCAAC
ATATCCGGTAGCACTTTACCG
Done.