Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007960.1 Hibiscus syriacus cultivar Beakdansim tig00110387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7905731
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 37 of 39
Found at i:7079776 original size:15 final size:15
Alignment explanation
Indices: 7079758--7079824 Score: 71
Period size: 15 Copynumber: 4.5 Consensus size: 15
7079748 TAAAACACAA
7079758 TCACATAGAACATAT
1 TCACATAGAACATAT
*
7079773 TCACATAGAACATTT
1 TCACATAGAACATAT
* * *
7079788 TCACGTAGATCACAT
1 TCACATAGAACATAT
* * *
7079803 TCATATATAACATGT
1 TCACATAGAACATAT
7079818 TCACATA
1 TCACATA
7079825 CTAATAAAAT
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 40 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.31
Consensus pattern (15 bp):
TCACATAGAACATAT
Found at i:7080839 original size:18 final size:19
Alignment explanation
Indices: 7080816--7080861 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
7080806 AAGTTTCTAT
*
7080816 ACCAACCAAAGATTCAA-A
1 ACCAACCAAAAATTCAAGA
7080834 ACCAACCAAAAATTCAAGA
1 ACCAACCAAAAATTCAAGA
*
7080853 AACAACCAA
1 ACCAACCAA
7080862 TTTTAAACAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 16 0.64
19 9 0.36
ACGTcount: A:0.59, C:0.28, G:0.04, T:0.09
Consensus pattern (19 bp):
ACCAACCAAAAATTCAAGA
Found at i:7099306 original size:19 final size:19
Alignment explanation
Indices: 7099282--7099332 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
7099272 AACGATGATG
*
7099282 TGGCTGACGACTGTTGACA
1 TGGCTGACGACTGTCGACA
* *
7099301 TGGCTGATGACTGTCGACG
1 TGGCTGACGACTGTCGACA
7099320 TGGCTGACGACTG
1 TGGCTGACGACTG
7099333 CCGATGTAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.18, C:0.22, G:0.35, T:0.25
Consensus pattern (19 bp):
TGGCTGACGACTGTCGACA
Found at i:7099999 original size:16 final size:17
Alignment explanation
Indices: 7099980--7100016 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
7099970 TATGATATTT
*
7099980 ACACTTTAATTTC-ATG
1 ACACTTTAATATCTATG
7099996 ACACTTTAATATCTATG
1 ACACTTTAATATCTATG
7100013 ACAC
1 ACAC
7100017 ATGTAACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.35, C:0.22, G:0.05, T:0.38
Consensus pattern (17 bp):
ACACTTTAATATCTATG
Found at i:7100520 original size:20 final size:20
Alignment explanation
Indices: 7100495--7100532 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
7100485 AATTTGTATT
7100495 GAAAGGTTAAGACCTTTATG
1 GAAAGGTTAAGACCTTTATG
7100515 GAAAGGTTAAGACCTTTA
1 GAAAGGTTAAGACCTTTA
7100533 AATGAAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.29
Consensus pattern (20 bp):
GAAAGGTTAAGACCTTTATG
Found at i:7104634 original size:12 final size:12
Alignment explanation
Indices: 7104617--7104641 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7104607 TTCTCTTATG
7104617 CTTAAAATCATT
1 CTTAAAATCATT
7104629 CTTAAAATCATT
1 CTTAAAATCATT
7104641 C
1 C
7104642 CAAGCAGGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (12 bp):
CTTAAAATCATT
Found at i:7105890 original size:24 final size:23
Alignment explanation
Indices: 7105863--7105913 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
7105853 ACTTTTGGGG
*
7105863 TGAAATGAAATAATTAATTTTTCA
1 TGAAAAGAAATAATT-ATTTTTCA
**
7105887 TGAAAAGACTTAATTATTTTTCA
1 TGAAAAGAAATAATTATTTTTCA
7105910 TGAA
1 TGAA
7105914 TAATCATGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (23 bp):
TGAAAAGAAATAATTATTTTTCA
Found at i:7109229 original size:2 final size:2
Alignment explanation
Indices: 7109222--7109249 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7109212 TTTATTTTTC
7109222 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7109250 TAAATAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7116039 original size:13 final size:13
Alignment explanation
Indices: 7116021--7116046 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7116011 CATAGTTGAA
7116021 CAGTCTTCATATG
1 CAGTCTTCATATG
7116034 CAGTCTTCATATG
1 CAGTCTTCATATG
7116047 AGCGTCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (13 bp):
CAGTCTTCATATG
Found at i:7116959 original size:22 final size:22
Alignment explanation
Indices: 7116931--7116978 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
7116921 AAGATATAGA
*
7116931 ATAATGCAATTGAACAATTTTG
1 ATAATGCAATAGAACAATTTTG
7116953 ATAATGCAATAGAACAATTTTG
1 ATAATGCAATAGAACAATTTTG
7116975 ATAA
1 ATAA
7116979 CTAAATTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.33
Consensus pattern (22 bp):
ATAATGCAATAGAACAATTTTG
Found at i:7117521 original size:24 final size:24
Alignment explanation
Indices: 7117494--7117556 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
7117484 AACACAAACG
* * *
7117494 AACAAACGTAAACGAACGAATATA
1 AACAAACATAAACAAAAGAATATA
* *
7117518 AACAAACACAAACAAAAGAATGTA
1 AACAAACATAAACAAAAGAATATA
7117542 AACAAACATAAACAA
1 AACAAACATAAACAA
7117557 CATAAATGAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.65, C:0.17, G:0.08, T:0.10
Consensus pattern (24 bp):
AACAAACATAAACAAAAGAATATA
Found at i:7117788 original size:14 final size:14
Alignment explanation
Indices: 7117769--7117799 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7117759 GATTGAACTA
*
7117769 AATATAAATGAATG
1 AATATAAACGAATG
7117783 AATATAAACGAATG
1 AATATAAACGAATG
7117797 AAT
1 AAT
7117800 TATTGAATGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.58, C:0.03, G:0.13, T:0.26
Consensus pattern (14 bp):
AATATAAACGAATG
Found at i:7118366 original size:20 final size:20
Alignment explanation
Indices: 7118341--7118575 Score: 132
Period size: 20 Copynumber: 11.7 Consensus size: 20
7118331 AATTTTCCAT
**
7118341 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATCCGAA
**
7118361 AATCGCAACGCGAA-CATATA
1 AATCGCAACGCGAATCCGA-A
* * *
7118381 AATCGCAACGCGATTCTGAC
1 AATCGCAACGCGAATCCGAA
* * * *
7118401 TATCGCAATGAGTATCCGTAA
1 AATCGCAACGCGAATCCG-AA
* * *
7118422 AATCGCAGCGCGTATCCGTA
1 AATCGCAACGCGAATCCGAA
* * *
7118442 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATCCGAA
* * * * *
7118462 AATCGTAATGCGTATCTGTA
1 AATCGCAACGCGAATCCGAA
* *
7118482 AATCGCAACGAGAATAC-ATA
1 AATCGCAACGCGAATCCGA-A
* * *
7118502 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATCCGAA
* *
7118522 AATCGCAATGCGAATACGTAA
1 AATCGCAACGCGAATCCG-AA
* * *
7118543 AATCGCAACGCGTATCTGTA
1 AATCGCAACGCGAATCCGAA
7118563 AATCGCAACGCGA
1 AATCGCAACGCGA
7118576 TTTTTAAAGC
Statistics
Matches: 159, Mismatches: 50, Indels: 12
0.72 0.23 0.05
Matches are distributed among these distances:
19 1 0.01
20 126 0.79
21 32 0.20
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGAATCCGAA
Found at i:7118476 original size:40 final size:40
Alignment explanation
Indices: 7118402--7118572 Score: 216
Period size: 40 Copynumber: 4.2 Consensus size: 40
7118392 GATTCTGACT
* * * **
7118402 ATCGCAATGAGTATCCGTAAAATCGCAGCGCGTATCCGTAA
1 ATCGCAACGAGAATACGT-AAATCGCAATGCGTATCCGTAA
* *
7118443 ATCGCAACGAGAATACGTAAATCGTAATGCGTATCTGTAA
1 ATCGCAACGAGAATACGTAAATCGCAATGCGTATCCGTAA
*
7118483 ATCGCAACGAGAATACATAAATCGCAATGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAATCGCAATGCGTATCCGTAA
* * * *
7118523 ATCGCAATGCGAATACGTAAAATCGCAACGCGTATCTGTAA
1 ATCGCAACGAGAATACGT-AAATCGCAATGCGTATCCGTAA
7118564 ATCGCAACG
1 ATCGCAACG
7118573 CGATTTTTAA
Statistics
Matches: 113, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
40 70 0.62
41 43 0.38
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (40 bp):
ATCGCAACGAGAATACGTAAATCGCAATGCGTATCCGTAA
Found at i:7119161 original size:20 final size:19
Alignment explanation
Indices: 7119136--7119207 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 19
7119126 TTCTAAACTT
7119136 AAAATCGCAACATGAAAATG
1 AAAATCGCAACA-GAAAATG
* *
7119156 AAAATCTCAACACGAAATTG
1 AAAATCGCAACA-GAAAATG
** *
7119176 ACTATCGCAACGAGCGAAATG
1 AAAATCGCAAC-AG-AAAATG
7119197 AAAATCGCAAC
1 AAAATCGCAAC
7119208 GAGAGAATCG
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
20 26 0.65
21 14 0.35
ACGTcount: A:0.49, C:0.21, G:0.15, T:0.15
Consensus pattern (19 bp):
AAAATCGCAACAGAAAATG
Found at i:7119205 original size:21 final size:21
Alignment explanation
Indices: 7119151--7119210 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
7119141 CGCAACATGA
*
7119151 AAATGAAAATCTCAAC-A-CG
1 AAATGAAAATCGCAACGAGCG
**
7119170 AAATTGACTATCGCAACGAGCG
1 AAA-TGAAAATCGCAACGAGCG
7119192 AAATGAAAATCGCAACGAG
1 AAATGAAAATCGCAACGAG
7119211 AGAATCGCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
19 3 0.09
20 10 0.30
21 15 0.45
22 5 0.15
ACGTcount: A:0.47, C:0.20, G:0.18, T:0.15
Consensus pattern (21 bp):
AAATGAAAATCGCAACGAGCG
Found at i:7119281 original size:33 final size:33
Alignment explanation
Indices: 7119239--7119371 Score: 167
Period size: 33 Copynumber: 3.8 Consensus size: 33
7119229 CAAAATCGCA
7119239 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
*
7119272 TTGCGATTTTAATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
* *
7119305 TTGCAATTTTCATTTCGCGTTGCGATAGTCATTTCCGCG
1 TTGCGATTTTCATTTCGCGTTGCGAT--TC---T-CTCG
*
7119344 TTGCGATTTTCATTATCTCGTTGCGATT
1 TTGCGATTTTCATT-TCGCGTTGCGATT
7119372 TTCATTTCAA
Statistics
Matches: 87, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
33 56 0.64
35 2 0.02
38 2 0.02
39 16 0.18
40 11 0.13
ACGTcount: A:0.13, C:0.22, G:0.20, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:7119345 original size:20 final size:19
Alignment explanation
Indices: 7119314--7119370 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 19
7119304 GTTGCAATTT
7119314 TCATTTCGCGTTGCGATAG
1 TCATTTCGCGTTGCGATAG
**
7119333 TCATTTCCGCGTTGCGATTT
1 TCATTT-CGCGTTGCGATAG
*
7119353 TCATTATCTCGTTGCGAT
1 TCATT-TCGCGTTGCGAT
7119371 TTTCATTTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.18
20 26 0.79
21 1 0.03
ACGTcount: A:0.14, C:0.23, G:0.21, T:0.42
Consensus pattern (19 bp):
TCATTTCGCGTTGCGATAG
Found at i:7119371 original size:20 final size:19
Alignment explanation
Indices: 7119234--7119379 Score: 132
Period size: 19 Copynumber: 8.1 Consensus size: 19
7119224 GAAACCAAAA
*
7119234 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
7119253 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* *
7119267 TCTCGTTGCGATTTTAATT
1 TCGCGTTGCGATTTTCATT
7119286 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* *
7119300 TCTCGTTGCAATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
7119319 TCGCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
7119338 TCCGCGTTGCGATTTTCATT
1 T-CGCGTTGCGATTTTCATT
*
7119358 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
7119378 TC
1 TC
7119380 AACCAAAAGA
Statistics
Matches: 101, Mismatches: 14, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
14 19 0.19
16 5 0.05
17 5 0.05
19 38 0.38
20 33 0.33
21 1 0.01
ACGTcount: A:0.13, C:0.23, G:0.19, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:7119377 original size:40 final size:39
Alignment explanation
Indices: 7119303--7119379 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 39
7119293 GCGATTCTCT
7119303 CGTTGCAATTTTCATTTCGCGTTGCGATAGTCATTTCCG
1 CGTTGCAATTTTCATTTCGCGTTGCGATAGTCATTTCCG
* * **
7119342 CGTTGCGATTTTCATTATCTCGTTGCGATTTTCATTTC
1 CGTTGCAATTTTCATT-TCGCGTTGCGATAGTCATTTC
7119380 AACCAAAAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
39 15 0.45
40 18 0.55
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.45
Consensus pattern (39 bp):
CGTTGCAATTTTCATTTCGCGTTGCGATAGTCATTTCCG
Found at i:7120247 original size:19 final size:19
Alignment explanation
Indices: 7120225--7120308 Score: 114
Period size: 19 Copynumber: 4.4 Consensus size: 19
7120215 AATACACTCG
*
7120225 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCA
* *
7120244 TTGCGCTTTTCATTTTGCA
1 TTGCGATTTTCATTTCGCA
*
7120263 TTGTGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
* *
7120282 TTGCGATTTTTATTTCACA
1 TTGCGATTTTCATTTCGCA
7120301 TTGCGATT
1 TTGCGATT
7120309 CTCTCGTTGA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 56 1.00
ACGTcount: A:0.14, C:0.18, G:0.17, T:0.51
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:7120343 original size:20 final size:20
Alignment explanation
Indices: 7120320--7120367 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
7120310 TCTCGTTGAT
* * *
7120320 ATAGTCATTTTCGCGTTGCG
1 ATAGTCAATTCCGCATTGCG
7120340 ATAGTCAATTCCGCATTGCG
1 ATAGTCAATTCCGCATTGCG
7120360 ATAGTCAA
1 ATAGTCAA
7120368 ATGAATGTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (20 bp):
ATAGTCAATTCCGCATTGCG
Found at i:7122845 original size:24 final size:24
Alignment explanation
Indices: 7122794--7122845 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
7122784 ATCCGAGTAT
** *
7122794 TGACCAAGATCAAAGTACGGGTAT
1 TGACCAAGATCAAAGTACGAATAC
* *
7122818 TGACCAAGATCAAATTTCGAATAC
1 TGACCAAGATCAAAGTACGAATAC
7122842 TGAC
1 TGAC
7122846 TAGTACTCAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (24 bp):
TGACCAAGATCAAAGTACGAATAC
Found at i:7123714 original size:20 final size:20
Alignment explanation
Indices: 7123693--7123982 Score: 227
Period size: 20 Copynumber: 14.4 Consensus size: 20
7123683 CAGAATCTCA
*
7123693 TTGCGATTTACGTATTCGCA
1 TTGCGATTTACGTATTCGCG
*
7123713 TTGCGATTTACGTATTCGCA
1 TTGCGATTTACGTATTCGCG
* *
7123733 TTGCGATTTACGTATTGGCA
1 TTGCGATTTACGTATTCGCG
* *
7123753 TTGCGATTTACAG-ATACGCA
1 TTGCGATTTAC-GTATTCGCG
*
7123773 TTGCGATTTACGTATTCTCG
1 TTGCGATTTACGTATTCGCG
*
7123793 TTACGATTTACAG-ATAT-GCG
1 TTGCGATTTAC-GTAT-TCGCG
*
7123813 TTGCGATTTACGTATTCTCG
1 TTGCGATTTACGTATTCGCG
* * *
7123833 TTGCGATTTATGGATACGCG
1 TTGCGATTTACGTATTCGCG
7123853 TTGCGATTTTACGTATT-GTCG
1 TTGCGA-TTTACGTATTCG-CG
* *
7123874 TTGCGATTTACGGATACGCG
1 TTGCGATTTACGTATTCGCG
*
7123894 TTGCGATTTTAAGGATATT--CG
1 TTGCGA-TTT-ACG-TATTCGCG
* *
7123915 TTGCGATAGT-CAG-AATCGCG
1 TTGCGAT-TTAC-GTATTCGCG
** * *
7123935 TTGCGATTTATATGTTCGCA
1 TTGCGATTTACGTATTCGCG
* *
7123955 TTGCGATTTTCATATTCGCG
1 TTGCGATTTACGTATTCGCG
7123975 TTGCGATT
1 TTGCGATT
7123983 ATGGAAAATC
Statistics
Matches: 217, Mismatches: 35, Indels: 36
0.75 0.12 0.12
Matches are distributed among these distances:
18 2 0.01
19 4 0.02
20 176 0.81
21 31 0.14
22 2 0.01
23 2 0.01
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.39
Consensus pattern (20 bp):
TTGCGATTTACGTATTCGCG
Found at i:7124081 original size:20 final size:19
Alignment explanation
Indices: 7124032--7124085 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
7124022 ATTCTTCATA
7124032 ATCGCGTTGCGATTCTGGG
1 ATCGCGTTGCGATTCTGGG
* **
7124051 AACTGATTTGCGATTCTGGAG
1 ATC-GCGTTGCGATTCTGG-G
7124072 ATCGCGTTGCGATT
1 ATCGCGTTGCGATT
7124086 TTTATTTCGC
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 2 0.07
20 22 0.81
21 3 0.11
ACGTcount: A:0.17, C:0.19, G:0.31, T:0.33
Consensus pattern (19 bp):
ATCGCGTTGCGATTCTGGG
Found at i:7125151 original size:22 final size:21
Alignment explanation
Indices: 7125109--7125152 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
7125099 TCTTACTGAG
* **
7125109 TTTTGTTTAAAATATTCAAAT
1 TTTTGTTTAAAAAATAAAAAT
7125130 TTTTGTATTAAAAAATAAAAAT
1 TTTTGT-TTAAAAAATAAAAAT
7125152 T
1 T
7125153 CTGAAATAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (21 bp):
TTTTGTTTAAAAAATAAAAAT
Found at i:7125390 original size:57 final size:57
Alignment explanation
Indices: 7125302--7125417 Score: 214
Period size: 57 Copynumber: 2.0 Consensus size: 57
7125292 TAACTTATTT
* *
7125302 TCTTTTAAATTCTAAAAGTGTCGATACTTATAATAAAGTATCGACACTTTCAACATA
1 TCTTTTAAATTCCAAAAGTGTCGATACTTATAATAAAATATCGACACTTTCAACATA
7125359 TCTTTTAAATTCCAAAAGTGTCGATACTTATAATAAAATATCGACACTTTCAACATA
1 TCTTTTAAATTCCAAAAGTGTCGATACTTATAATAAAATATCGACACTTTCAACATA
7125416 TC
1 TC
7125418 CGATAGCTCT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (57 bp):
TCTTTTAAATTCCAAAAGTGTCGATACTTATAATAAAATATCGACACTTTCAACATA
Found at i:7125817 original size:111 final size:112
Alignment explanation
Indices: 7125573--7125923 Score: 596
Period size: 111 Copynumber: 3.1 Consensus size: 112
7125563 GATACTTATA
* * * *
7125573 ATAAAGTATCGACACTATCAACATATCTGGTAGCGCTTAACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
7125638 TTTGTCATTTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
66 TTTGTCA-TTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
7125686 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
* *
7125751 TTTGTCA-TTTTTTACCTGTTATATTATTATAGATCGATACATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
*
7125797 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGAT
1 ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
** *
7125862 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATTAATATATTTTT
66 TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
7125909 ATAAAGTATCGACAC
1 ATAAAGTATCGACAC
7125924 AAACCGACAA
Statistics
Matches: 225, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
111 108 0.48
112 49 0.22
113 68 0.30
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (112 bp):
ATAAAGTATCGACACTTTCAATATATCCGGTAGCGCTTTACCTGTTTTGTCATTTATAGACCGGT
TTTGTCATTTTTTTACCTGTTATATTGTTATGGATCGATACATTTTT
Found at i:7127212 original size:3 final size:3
Alignment explanation
Indices: 7127204--7127241 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
7127194 CTGGTCGCAC
* *
7127204 GAA GAA GAA GAA AAA GAA GGA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
7127242 CGACGACGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:7134806 original size:20 final size:21
Alignment explanation
Indices: 7134781--7134830 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
7134771 AATATTCAGA
*
7134781 TTATATTATT-TATCATATTT
1 TTATATTATTATATCATAATT
*
7134801 TTATATTTTTCATATCATAATT
1 TTATATTATT-ATATCATAATT
7134823 TTAT-TTAT
1 TTATATTAT
7134831 CTCAAATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 9 0.36
21 3 0.12
22 13 0.52
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (21 bp):
TTATATTATTATATCATAATT
Found at i:7135520 original size:30 final size:30
Alignment explanation
Indices: 7135471--7135561 Score: 128
Period size: 30 Copynumber: 3.0 Consensus size: 30
7135461 AAATAATAAG
* *
7135471 CTCTCAACCCTTAAAACATCACACATCAATC
1 CTCTCAACCCGT-AAACATCACACAACAATC
* *
7135502 CTCTCAACCCGTAAACATCACATAACAATT
1 CTCTCAACCCGTAAACATCACACAACAATC
*
7135532 CTCTCAACCCGTAAACATCACCCAACAATC
1 CTCTCAACCCGTAAACATCACACAACAATC
7135562 TTCTTATTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 42 0.79
31 11 0.21
ACGTcount: A:0.38, C:0.38, G:0.02, T:0.21
Consensus pattern (30 bp):
CTCTCAACCCGTAAACATCACACAACAATC
Found at i:7136522 original size:22 final size:22
Alignment explanation
Indices: 7136491--7136555 Score: 96
Period size: 22 Copynumber: 3.0 Consensus size: 22
7136481 GGATGGGATG
7136491 GGATG-GGGAGTGTGAACGGTC
1 GGATGAGGGAGTGTGAACGGTC
*
7136512 GGATGAGGGAGTGTGAACGGTA
1 GGATGAGGGAGTGTGAACGGTC
* *
7136534 GGATGAGAGAGTGTGAATGGTC
1 GGATGAGGGAGTGTGAACGGTC
7136556 CAGATTAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
21 5 0.13
22 34 0.87
ACGTcount: A:0.25, C:0.06, G:0.49, T:0.20
Consensus pattern (22 bp):
GGATGAGGGAGTGTGAACGGTC
Found at i:7137919 original size:16 final size:16
Alignment explanation
Indices: 7137898--7137932 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7137888 TATATACATA
7137898 TATATAATAATAATAT
1 TATATAATAATAATAT
* *
7137914 TATATATTATTAATAT
1 TATATAATAATAATAT
7137930 TAT
1 TAT
7137933 TATTTACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TATATAATAATAATAT
Found at i:7138964 original size:20 final size:20
Alignment explanation
Indices: 7138939--7138976 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7138929 CACATGTTAA
7138939 AGAATGCATCAATACACTGT
1 AGAATGCATCAATACACTGT
* *
7138959 AGAATGTATCAATGCACT
1 AGAATGCATCAATACACT
7138977 TCAAGGGGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.26
Consensus pattern (20 bp):
AGAATGCATCAATACACTGT
Found at i:7141971 original size:26 final size:26
Alignment explanation
Indices: 7141927--7141977 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7141917 TAAAGGATCA
*
7141927 TATATGATAAAGGTTATATGGAAGTG
1 TATATGATAAAGGTTATATAGAAGTG
*
7141953 TATATGAT-AAGTTTGATATAGAAGT
1 TATATGATAAAGGTT-ATATAGAAGT
7141978 AAGAGAAATG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.37
Consensus pattern (26 bp):
TATATGATAAAGGTTATATAGAAGTG
Found at i:7146089 original size:20 final size:20
Alignment explanation
Indices: 7146042--7146091 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
7146032 TCTTAGAGCT
*
7146042 CATATAGATGTATTTAGGAG
1 CATATAGTTGTATTTAGGAG
7146062 CATATAGTTGTATTTAGGAG
1 CATATAGTTGTATTTAGGAG
7146082 CATATAGTTG
1 CATATAGTTG
7146092 CATGTGGTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (20 bp):
CATATAGTTGTATTTAGGAG
Found at i:7151295 original size:20 final size:20
Alignment explanation
Indices: 7151266--7151304 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7151256 AGAGCTCATA
*
7151266 TAGGATCATATAGATGCATT
1 TAGGAGCATATAGATGCATT
*
7151286 TAGGAGCATATAGTTGCAT
1 TAGGAGCATATAGATGCAT
7151305 GTGGTGAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
TAGGAGCATATAGATGCATT
Found at i:7153852 original size:2 final size:2
Alignment explanation
Indices: 7153847--7153895 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
7153837 AATAACTTTC
7153847 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7153889 AT AT AT A
1 AT AT AT A
7153896 GTAGCTCAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7156526 original size:111 final size:103
Alignment explanation
Indices: 7156401--7156642 Score: 256
Period size: 104 Copynumber: 2.3 Consensus size: 103
7156391 TCACTACACA
7156401 TGACCAA-ACTGCAAAAACACGCTTAAATA-GGGTGGACTAAACAGAAAATATCCCAATAAACAC
1 TGACCAATA-TGCAAAAACACGC-TAAATATGGG-GGACTAAACAGAAAATATCCC-A-AAA-AC
* * *
7156464 ATAACATGCAAGAAAAAAAGGTTAAATAATAATTTTGGTCC-CTACAGG
60 AT-ACAT-CAAG--AAAAAGGATAAATAAAAACTTTGGTCCTC-ACAGG
* ** * *
7156512 TGACCAATATGCAAAAACACGCTAAACTATGGGGGACTAAATATCAAATATCCCAAAAATATATA
1 TGACCAATATGCAAAAACACGCTAAA-TATGGGGGACTAAACAGAAAATATCCCAAAAACATACA
* *
7156577 TCATGAAAAAGGATAAATAAAAACTTTGGTCCTCGCAGG
65 TCAAGAAAAAGGATAAATAAAAACTTTGGTCCTCACAGG
*
7156616 TGACCAATATGCAAAAACGCGCTAAAT
1 TGACCAATATGCAAAAACACGCTAAAT
7156643 TATAGTGGAC
Statistics
Matches: 116, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
103 1 0.01
104 53 0.46
105 1 0.01
106 3 0.03
107 3 0.03
108 3 0.03
109 3 0.03
110 5 0.04
111 40 0.34
112 4 0.03
ACGTcount: A:0.46, C:0.18, G:0.15, T:0.21
Consensus pattern (103 bp):
TGACCAATATGCAAAAACACGCTAAATATGGGGGACTAAACAGAAAATATCCCAAAAACATACAT
CAAGAAAAAGGATAAATAAAAACTTTGGTCCTCACAGG
Found at i:7161123 original size:27 final size:27
Alignment explanation
Indices: 7161070--7161124 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
7161060 CACTATCACT
* *
7161070 ACTTTGAACTTGAAACTCCATAGCATC
1 ACTTTGAACTTGAAACTCCACAACATC
*
7161097 ACTTTGAACTTGAAAGTCCACAACATC
1 ACTTTGAACTTGAAACTCCACAACATC
7161124 A
1 A
7161125 AGATCTTCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.27
Consensus pattern (27 bp):
ACTTTGAACTTGAAACTCCACAACATC
Found at i:7163174 original size:31 final size:31
Alignment explanation
Indices: 7163132--7163209 Score: 129
Period size: 31 Copynumber: 2.5 Consensus size: 31
7163122 ATAGATTCCG
* *
7163132 AAGAACCTAGGTAAACAGTACATATGTCCCA
1 AAGAACATAGGTAAACAATACATATGTCCCA
*
7163163 AAGAACATAGGTAAACAATCCATATGTCCCA
1 AAGAACATAGGTAAACAATACATATGTCCCA
7163194 AAGAACATAGGTAAAC
1 AAGAACATAGGTAAAC
7163210 CCTCGACCCT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.46, C:0.21, G:0.15, T:0.18
Consensus pattern (31 bp):
AAGAACATAGGTAAACAATACATATGTCCCA
Found at i:7184743 original size:16 final size:14
Alignment explanation
Indices: 7184724--7184751 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7184714 TTTAAATATA
7184724 TATATAATTTTTTT
1 TATATAATTTTTTT
7184738 TATATAATTTTTTT
1 TATATAATTTTTTT
7184752 AATTATCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TATATAATTTTTTT
Found at i:7185737 original size:23 final size:23
Alignment explanation
Indices: 7185687--7185731 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7185677 TGTCTATTTT
* * *
7185687 ATTATATAAGTGTTACCTATTAC
1 ATTATATAAGCGCTACCTAATAC
7185710 ATTATATAAGCGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
7185732 TGTTATTGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:7185749 original size:87 final size:87
Alignment explanation
Indices: 7185603--7185765 Score: 299
Period size: 87 Copynumber: 1.9 Consensus size: 87
7185593 AAATAGGTCA
*
7185603 ATATAAGTGTTACCTATTACATTACATAAGCGCTACCTAATTTGTTATTGTACTTGATAATATTT
1 ATATAAGTGTTACCTATTACATTACATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
7185668 CCGGTTAAATGTCTATTTTATT
66 CCGGTTAAATGTCTATTTTATT
* *
7185690 ATATAAGTGTTACCTATTACATTATATAAGCGCTACCTAATATGTTATTGTGCTTGATAATATTT
1 ATATAAGTGTTACCTATTACATTACATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
7185755 CCGGTTAAATG
66 CCGGTTAAATG
7185766 ATATAACATA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 73 1.00
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (87 bp):
ATATAAGTGTTACCTATTACATTACATAAGCGCTACCTAATATGTTATTGTACTTGATAATATTT
CCGGTTAAATGTCTATTTTATT
Found at i:7186188 original size:60 final size:60
Alignment explanation
Indices: 7186112--7186256 Score: 211
Period size: 60 Copynumber: 2.4 Consensus size: 60
7186102 TATAATTATT
* ** *
7186112 ATTCTAAATGTA-TCCTCAAACTTTTGAAGATTTTAGTTTTATCCTTTAACTATGACCTTC
1 ATTCTAAAT-TAGTCCTCAAACTTTTAAAGATTTTAGTTTTATCCTCAAACTATGACCTTA
*
7186172 ATTCTAAATTAGTCCTCAAACTTTTAAAGATTTTAGTTTTATTCTCAAACTATGACCTTA
1 ATTCTAAATTAGTCCTCAAACTTTTAAAGATTTTAGTTTTATCCTCAAACTATGACCTTA
* *
7186232 ATTTTAAATTAGTCCCCAAACTTTT
1 ATTCTAAATTAGTCCTCAAACTTTT
7186257 TGTACATTTT
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
59 2 0.03
60 75 0.97
ACGTcount: A:0.31, C:0.18, G:0.07, T:0.44
Consensus pattern (60 bp):
ATTCTAAATTAGTCCTCAAACTTTTAAAGATTTTAGTTTTATCCTCAAACTATGACCTTA
Found at i:7186281 original size:60 final size:60
Alignment explanation
Indices: 7186112--7186284 Score: 174
Period size: 60 Copynumber: 2.9 Consensus size: 60
7186102 TATAATTATT
* * * ** *
7186112 ATTCTAAATGTA-TCCTCAAACTTTTGAAGATTTTAGTTTTA-TCCTTTAACTATGACCTTC
1 ATTCTAAAT-TAGTCCCCAAACTTTTAAACATTTTAGTTTTATTCC-CAAACTATGACCTTA
* * *
7186172 ATTCTAAATTAGTCCTCAAACTTTTAAAGATTTTAGTTTTATTCTCAAACTATGACCTTA
1 ATTCTAAATTAGTCCCCAAACTTTTAAACATTTTAGTTTTATTCCCAAACTATGACCTTA
* **
7186232 ATTTTAAATTAGTCCCCAAACTTTTTGTACATTTT-GATTTTA-TCCCAAACTAT
1 ATTCTAAATTAGTCCCCAAAC-TTTTAAACATTTTAG-TTTTATTCCCAAACTAT
7186285 ATGCATATAC
Statistics
Matches: 98, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
59 2 0.02
60 79 0.81
61 17 0.17
ACGTcount: A:0.31, C:0.18, G:0.07, T:0.45
Consensus pattern (60 bp):
ATTCTAAATTAGTCCCCAAACTTTTAAACATTTTAGTTTTATTCCCAAACTATGACCTTA
Found at i:7186966 original size:60 final size:60
Alignment explanation
Indices: 7186872--7186985 Score: 149
Period size: 60 Copynumber: 1.9 Consensus size: 60
7186862 TAATATATCC
* * **
7186872 ATTAAAATATTTAAAAGTTTAAGGAGTAACTTAAAATA-AGAGTCATAGTTTGAGGATGGT
1 ATTAAAATATTCAAAAGTGTAAGGACCAACTTAAAATATAGA-TCATAGTTTGAGGATGGT
* * *
7186932 ATTAAAATATTCCAAAGTGTAAGGACCAATTTAAAATATTGATCATAGTTTGAG
1 ATTAAAATATTCAAAAGTGTAAGGACCAACTTAAAATATAGATCATAGTTTGAG
7186986 AACATACGAT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
60 44 0.96
61 2 0.04
ACGTcount: A:0.43, C:0.06, G:0.18, T:0.33
Consensus pattern (60 bp):
ATTAAAATATTCAAAAGTGTAAGGACCAACTTAAAATATAGATCATAGTTTGAGGATGGT
Found at i:7187152 original size:20 final size:20
Alignment explanation
Indices: 7187127--7187175 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
7187117 TTTAAAATAA
*
7187127 GAAAATTTTGCTCATGAATT
1 GAAAATTTAGCTCATGAATT
7187147 GAAAATTTAGCTCATGAATT
1 GAAAATTTAGCTCATGAATT
7187167 GAAAATTTA
1 GAAAATTTA
7187176 TTTAATAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.37
Consensus pattern (20 bp):
GAAAATTTAGCTCATGAATT
Found at i:7190498 original size:18 final size:18
Alignment explanation
Indices: 7190477--7190515 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
7190467 CTCCTTATCT
* *
7190477 GTTGACTCCTTCAGTCCA
1 GTTGACTCATTCAGCCCA
7190495 GTTGACTCATTCAGCCCA
1 GTTGACTCATTCAGCCCA
7190513 GTT
1 GTT
7190516 ATCATCTCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.18, C:0.31, G:0.18, T:0.33
Consensus pattern (18 bp):
GTTGACTCATTCAGCCCA
Found at i:7195585 original size:18 final size:18
Alignment explanation
Indices: 7195550--7195588 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
7195540 CTCCTTATCT
* * *
7195550 GTTGACTCCTTGAGCCCA
1 GTTGACTCATTCAACCCA
7195568 GTTGACTCATTCAACCCA
1 GTTGACTCATTCAACCCA
7195586 GTT
1 GTT
7195589 TATCTCCTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.31, G:0.18, T:0.31
Consensus pattern (18 bp):
GTTGACTCATTCAACCCA
Found at i:7195661 original size:24 final size:24
Alignment explanation
Indices: 7195629--7195674 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
7195619 TAAAGCATCG
*
7195629 GTAATTTCAAAATCCCTAACTCCT
1 GTAAATTCAAAATCCCTAACTCCT
7195653 GTAAATTCAAAATCCCTAACTC
1 GTAAATTCAAAATCCCTAACTC
7195675 TTTTCTCAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.37, C:0.28, G:0.04, T:0.30
Consensus pattern (24 bp):
GTAAATTCAAAATCCCTAACTCCT
Found at i:7201283 original size:20 final size:20
Alignment explanation
Indices: 7201258--7201297 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7201248 ATTTTATCGT
7201258 TAATTGAATTGATTTTTTAA
1 TAATTGAATTGATTTTTTAA
7201278 TAATTGAATTGATTTTTTAA
1 TAATTGAATTGATTTTTTAA
7201298 ATTATTAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (20 bp):
TAATTGAATTGATTTTTTAA
Found at i:7202782 original size:74 final size:73
Alignment explanation
Indices: 7202662--7202808 Score: 269
Period size: 74 Copynumber: 2.0 Consensus size: 73
7202652 AGCCGAGTAC
7202662 CATCTTCTCACGATCGACGATACGATAAACCGTCATGAAATTTTCTGGATTGAATTAAAGAAAAC
1 CATCTTCTCACGATCGACGATACGATAAACCGTCATGAAATTTTCTGGATTGAATTAAAGAAAAC
7202727 GTAACAAG
66 GTAACAAG
7202735 CATCTTCTCACGATCGAACGATACGAT-AACCGGTCATGAAATTTTCTGGATTGAATTAAAGAAA
1 CATCTTCTCACGATCG-ACGATACGATAAACC-GTCATGAAATTTTCTGGATTGAATTAAAGAAA
7202799 ACGTAACAAG
64 ACGTAACAAG
7202809 GAATCAACAT
Statistics
Matches: 72, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
73 20 0.28
74 52 0.72
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (73 bp):
CATCTTCTCACGATCGACGATACGATAAACCGTCATGAAATTTTCTGGATTGAATTAAAGAAAAC
GTAACAAG
Found at i:7214930 original size:2 final size:2
Alignment explanation
Indices: 7214925--7214959 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7214915 TATACTTTTG
7214925 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7214960 CTTACACATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7215658 original size:22 final size:22
Alignment explanation
Indices: 7215633--7215687 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
7215623 CTGTTAATAT
* *
7215633 CAGGAGTTATTTGATTTAATTC
1 CAGGAGTTATATGATATAATTC
* * *
7215655 CAGGGGTTACATGATATAATTT
1 CAGGAGTTATATGATATAATTC
*
7215677 CGGGAGTTATA
1 CAGGAGTTATA
7215688 ATAGCTGAAT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (22 bp):
CAGGAGTTATATGATATAATTC
Found at i:7217021 original size:21 final size:21
Alignment explanation
Indices: 7216995--7217038 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
7216985 GGGATTAGAT
7216995 GATCTCTGAAAATAATATTTA
1 GATCTCTGAAAATAATATTTA
* *
7217016 GATCTCTGAAAATCATCTTTA
1 GATCTCTGAAAATAATATTTA
7217037 GA
1 GA
7217039 GGGATAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.36
Consensus pattern (21 bp):
GATCTCTGAAAATAATATTTA
Found at i:7217780 original size:17 final size:17
Alignment explanation
Indices: 7217758--7217790 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7217748 AGGCCTATCG
*
7217758 TTAATATAATATAATAT
1 TTAATAAAATATAATAT
7217775 TTAATAAAATATAATA
1 TTAATAAAATATAATA
7217791 AAAAAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
TTAATAAAATATAATAT
Found at i:7217804 original size:22 final size:22
Alignment explanation
Indices: 7217760--7217804 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7217750 GCCTATCGTT
* * *
7217760 AATATAATATAATATTTAATAA
1 AATATAATAAAAAAATTAATAA
*
7217782 AATATAATAAAAAAATTATTAA
1 AATATAATAAAAAAATTAATAA
7217804 A
1 A
7217805 CATGTTTAGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
AATATAATAAAAAAATTAATAA
Found at i:7219483 original size:117 final size:117
Alignment explanation
Indices: 7219277--7219512 Score: 445
Period size: 117 Copynumber: 2.0 Consensus size: 117
7219267 GGTTTAGCAT
7219277 TAGTAGCACCACCGGAACCATCACAACATCCATCATCTCCACTGATTATGAGCCCACAGGTGTAC
1 TAGTAGCACCACCGGAACCATCACAACATCCATCATCTCCACTGATTATGAGCCCACAGGTGTAC
*
7219342 ATGCCTAGCACACCAGTTCAAATGCCACCGCCGCAGGGGTACATGCCCAGCC
66 ATGCCCAGCACACCAGTTCAAATGCCACCGCCGCAGGGGTACATGCCCAGCC
*
7219394 TAGTAGCACCACCGGAACCATCACAACATCCATCATCTCCACTGATTATGAGCCCACAGGTGTAT
1 TAGTAGCACCACCGGAACCATCACAACATCCATCATCTCCACTGATTATGAGCCCACAGGTGTAC
*
7219459 ATGCCCAGCACACCAGTTCAAATGCCACCGCTGCAGGGGTACATGCCCAGCC
66 ATGCCCAGCACACCAGTTCAAATGCCACCGCCGCAGGGGTACATGCCCAGCC
7219511 TA
1 TA
7219513 ATAGTTCATA
Statistics
Matches: 116, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 116 1.00
ACGTcount: A:0.28, C:0.35, G:0.19, T:0.18
Consensus pattern (117 bp):
TAGTAGCACCACCGGAACCATCACAACATCCATCATCTCCACTGATTATGAGCCCACAGGTGTAC
ATGCCCAGCACACCAGTTCAAATGCCACCGCCGCAGGGGTACATGCCCAGCC
Found at i:7220880 original size:6 final size:6
Alignment explanation
Indices: 7220866--7220914 Score: 64
Period size: 6 Copynumber: 8.2 Consensus size: 6
7220856 CTAGAAAATA
* *
7220866 AAATTC AAATGC AAATTC AAATTC AACTTC -AATTAC AAATTC AAATTC
1 AAATTC AAATTC AAATTC AAATTC AAATTC AAATT-C AAATTC AAATTC
7220914 A
1 A
7220915 TATTTACATT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
5 3 0.08
6 30 0.81
7 4 0.11
ACGTcount: A:0.49, C:0.18, G:0.02, T:0.31
Consensus pattern (6 bp):
AAATTC
Found at i:7220896 original size:24 final size:24
Alignment explanation
Indices: 7220869--7220914 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
7220859 GAAAATAAAA
*
7220869 TTCAAATGCAAATTCAAATTCAAC
1 TTCAAATACAAATTCAAATTCAAC
*
7220893 TTCAATTACAAATTCAAATTCA
1 TTCAAATACAAATTCAAATTCA
7220915 TATTTACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.33
Consensus pattern (24 bp):
TTCAAATACAAATTCAAATTCAAC
Found at i:7221701 original size:34 final size:34
Alignment explanation
Indices: 7221618--7221715 Score: 148
Period size: 34 Copynumber: 3.0 Consensus size: 34
7221608 AAAGAAACTT
* * *
7221618 AATGAAAAGTTTTG-AAG-TGGGACCACAAACAG
1 AATGAGAAGTTTTGAAAGTTAGGACCACAAACAC
7221650 AATGAGAA-TTTTGAAAGTTAGGACCACAAACAC
1 AATGAGAAGTTTTGAAAGTTAGGACCACAAACAC
7221683 AATGAGAAGTTTTGAAAGTTAGGACCACAAACA
1 AATGAGAAGTTTTGAAAGTTAGGACCACAAACA
7221716 TATTCTTATA
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
31 5 0.08
32 10 0.17
33 21 0.35
34 24 0.40
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.20
Consensus pattern (34 bp):
AATGAGAAGTTTTGAAAGTTAGGACCACAAACAC
Found at i:7223443 original size:2 final size:2
Alignment explanation
Indices: 7223299--7223432 Score: 268
Period size: 2 Copynumber: 67.0 Consensus size: 2
7223289 AGCACGCACG
7223299 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
7223341 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
7223383 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
7223425 CA CA CA CA
1 CA CA CA CA
7223433 TATATCACAC
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 132 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:7224983 original size:169 final size:170
Alignment explanation
Indices: 7224598--7224983 Score: 420
Period size: 170 Copynumber: 2.3 Consensus size: 170
7224588 AGGATGTTAC
* * * * * * *
7224598 ATAGTGTCTCATCCCATCAAACATAATAGGTGTTGACGTGATTAGTTATCC-GATGGGGAACATC
1 ATAGTGTCTCATCCCATCAAACATAATAAGTGTTGACATAAATAGTT-CCCTGACGGGGAACATA
* * *
7224662 ATTTAAGGCTATTATTAACTGAAGAATGCAGAGAATCTATGACGAAAAGGGAAGACGCGTCCCAC
65 ATTTAAGGCTATTATTAACTGAAGAATGCAGAGAATCTATGAAGAAAAGAGAAGACGCGCCCCAC
* *
7224727 AAGAAACACTTTCACATTTTTCAAAGAATTTATGCCATGTA
130 AAGAAACACTTTCACATTTTTCAAAGAATCTATGCCATGCA
** * *
7224768 ATAGTGTCTCATCCCATCAAACATAATAAGTGTTGATGTGAATAGTTCCCTGACGGGGGACATAA
1 ATAGTGTCTCATCCCATCAAACATAATAAGTGTTGACATAAATAGTTCCCTGACGGGGAACATAA
* * * * * *
7224833 TTTGAGGCTATTATTAATTGAAGCATGCAGAGAATCTCT-AAGAAAATAGAAGGCGC-CCCCACA
66 TTTAAGGCTATTATTAACTGAAGAATGCAGAGAATCTATGAAGAAAAGAGAAGACGCGCCCCACA
* * * * * * *
7224896 AGAAGCCCTTTCATATTTTCTTAAAGAATCTCTGTCATGCC
131 AGAAACACTTTCACATTTT-TCAAAGAATCTATGCCATGCA
* * * *
7224937 ATATTGTCTTATCCCATCAAACAT-ATTATTGGTTGACATAAATAGTT
1 ATAGTGTCTCATCCCATCAAACATAATAAGT-GTTGACATAAATAGTT
7224984 GAGATGAATA
Statistics
Matches: 181, Mismatches: 32, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
168 26 0.14
169 65 0.36
170 90 0.50
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (170 bp):
ATAGTGTCTCATCCCATCAAACATAATAAGTGTTGACATAAATAGTTCCCTGACGGGGAACATAA
TTTAAGGCTATTATTAACTGAAGAATGCAGAGAATCTATGAAGAAAAGAGAAGACGCGCCCCACA
AGAAACACTTTCACATTTTTCAAAGAATCTATGCCATGCA
Found at i:7225082 original size:8 final size:8
Alignment explanation
Indices: 7225069--7225101 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
7225059 CCTTACACTA
7225069 TCTCAAAC
1 TCTCAAAC
*
7225077 TCTCAAAT
1 TCTCAAAC
7225085 TCTCAAAC
1 TCTCAAAC
7225093 TCTCAAAC
1 TCTCAAAC
7225101 T
1 T
7225102 GATATCTCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (8 bp):
TCTCAAAC
Found at i:7228163 original size:23 final size:23
Alignment explanation
Indices: 7228099--7228164 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 23
7228089 CATAGATTTG
* * *
7228099 TCCCGATGGATCGCGTAGAATTT
1 TCCCGAAGGACCGCGTAGAATTA
* * *
7228122 TCCTGAAGGACCACATAGAATTA
1 TCCCGAAGGACCGCGTAGAATTA
*
7228145 TCCCGAAGGACTGCGTAGAA
1 TCCCGAAGGACCGCGTAGAA
7228165 CCCTCGACTC
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (23 bp):
TCCCGAAGGACCGCGTAGAATTA
Found at i:7230189 original size:53 final size:52
Alignment explanation
Indices: 7230122--7230247 Score: 179
Period size: 53 Copynumber: 2.4 Consensus size: 52
7230112 ACTATTTTTG
7230122 TGTATGTG-TTTTTCTAATATTTCAATGTAATCT-TATTTTCTAACA-TTTCAA
1 TGTATGTGTTTTTTCTAATATTTC-ATGTAAT-TGTATTTTCTAACATTTTCAA
*
7230173 TGTATGTGTTTGTTTCTAATATTTCATGTAATTGTATTTTCTAATATTTTCAA
1 TGTATGTGTTT-TTTCTAATATTTCATGTAATTGTATTTTCTAACATTTTCAA
*
7230226 TGTATGTGTATTTTCTAA-ATTT
1 TGTATGTGTTTTTTCTAATATTT
7230248 TTTCCATTTA
Statistics
Matches: 69, Mismatches: 2, Indels: 8
0.87 0.03 0.10
Matches are distributed among these distances:
51 13 0.19
52 27 0.39
53 29 0.42
ACGTcount: A:0.25, C:0.09, G:0.10, T:0.56
Consensus pattern (52 bp):
TGTATGTGTTTTTTCTAATATTTCATGTAATTGTATTTTCTAACATTTTCAA
Found at i:7230248 original size:26 final size:26
Alignment explanation
Indices: 7230122--7230248 Score: 124
Period size: 26 Copynumber: 4.9 Consensus size: 26
7230112 ACTATTTTTG
7230122 TGTATGTGT-TTTTCT-AATATTTCAA
1 TGTATGTGTATTTTCTAAAT-TTTCAA
*
7230147 TGTAATCT-TATTTTCTAACA-TTTCAA
1 TGT-ATGTGTATTTTCTAA-ATTTTCAA
*
7230173 TGTATGTGTTTGTTTCT-AATATTTC-A
1 TGTATGTGTAT-TTTCTAAAT-TTTCAA
7230199 TGTAAT-TGTATTTTCTAATATTTTCAA
1 TGT-ATGTGTATTTTCTAA-ATTTTCAA
7230226 TGTATGTGTATTTTCTAAATTTT
1 TGTATGTGTATTTTCTAAATTTT
7230249 TTCCATTTAG
Statistics
Matches: 85, Mismatches: 4, Indels: 25
0.75 0.04 0.22
Matches are distributed among these distances:
25 13 0.15
26 41 0.48
27 30 0.35
28 1 0.01
ACGTcount: A:0.25, C:0.09, G:0.10, T:0.56
Consensus pattern (26 bp):
TGTATGTGTATTTTCTAAATTTTCAA
Found at i:7230249 original size:27 final size:26
Alignment explanation
Indices: 7230078--7230247 Score: 154
Period size: 25 Copynumber: 6.5 Consensus size: 26
7230068 ATGTTTGTGC
* *
7230078 TTTTCTAATATTTTAGTATTGTATGTG-C
1 TTTTCTAATATTTCA--A-TGTATGTGTA
* ***
7230106 TTTTCTACTATTTTTGTGTATGTGT-
1 TTTTCTAATATTTCAATGTATGTGTA
*
7230131 TTTTCTAATATTTCAATGTAATCT-TA
1 TTTTCTAATATTTCAATGT-ATGTGTA
* *
7230157 TTTTCTAACATTTCAATGTATGTGTT
1 TTTTCTAATATTTCAATGTATGTGTA
7230183 TGTTTCTAATATTTC-ATGTAAT-TGTA
1 T-TTTCTAATATTTCAATGT-ATGTGTA
7230209 TTTTCTAATATTTTCAATGTATGTGTA
1 TTTTCTAATA-TTTCAATGTATGTGTA
7230236 TTTTCTAA-ATTT
1 TTTTCTAATATTT
7230248 TTTCCATTTA
Statistics
Matches: 120, Mismatches: 13, Indels: 21
0.78 0.08 0.14
Matches are distributed among these distances:
25 39 0.32
26 38 0.32
27 30 0.25
28 13 0.11
ACGTcount: A:0.24, C:0.09, G:0.11, T:0.57
Consensus pattern (26 bp):
TTTTCTAATATTTCAATGTATGTGTA
Found at i:7230325 original size:23 final size:23
Alignment explanation
Indices: 7230295--7230426 Score: 138
Period size: 25 Copynumber: 5.4 Consensus size: 23
7230285 CATTTTAATC
7230295 TAACCTAAAACCTTAAACCACTT
1 TAACCTAAAACCTTAAACCACTT
7230318 TAACCTAAAACCTTAAACCACTT
1 TAACCTAAAACCTTAAACCACTT
* *
7230341 TAACCTAAAAAAACTCTAAACCCCTT
1 TAACCT--AAAACCT-TAAACCACTT
* * *
7230367 TCATCTAAAACACCCTAAACCACTT
1 TAACCT-AAA-ACCTTAAACCACTT
* *
7230392 TAACATATAAAACCTTAAACCACTA
1 TAAC--CTAAAACCTTAAACCACTT
7230417 TAACCTAAAA
1 TAACCTAAAA
7230427 ACATTAAAAA
Statistics
Matches: 90, Mismatches: 13, Indels: 12
0.78 0.11 0.10
Matches are distributed among these distances:
23 34 0.38
25 37 0.41
26 18 0.20
27 1 0.01
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (23 bp):
TAACCTAAAACCTTAAACCACTT
Found at i:7236850 original size:2 final size:2
Alignment explanation
Indices: 7236837--7236870 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
7236827 GGTCCCATAG
*
7236837 AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7236871 TCTAGGTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7243578 original size:64 final size:63
Alignment explanation
Indices: 7243466--7243606 Score: 171
Period size: 64 Copynumber: 2.2 Consensus size: 63
7243456 TATATTCAAT
* * *
7243466 GTGCATCGATGCACTCTTTAAAGAAGAATCATCGAATGCAATTGGTGTATCGATGCATAAGG-A
1 GTGCATCGATGCACCCTTAAAAGAAGAATCATCGAAGGCAATTGGTGTATCGATGCAT-AGGTA
* * *
7243529 GTGCATCGATGCATCCCCTTAAAATGAA-AA-CATCGAAGGTAATTTGTGTATCGATGCATGGGT
1 GTGCATCGATGCA--CCCTTAAAA-GAAGAATCATCGAAGGCAATTGGTGTATCGATGCATAGGT
7243592 A
63 A
7243593 GTGCATCGATGCAC
1 GTGCATCGATGCAC
7243607 ATGTTAAAGA
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
62 1 0.01
63 15 0.22
64 40 0.59
65 9 0.13
66 3 0.04
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (63 bp):
GTGCATCGATGCACCCTTAAAAGAAGAATCATCGAAGGCAATTGGTGTATCGATGCATAGGTA
Found at i:7243621 original size:24 final size:20
Alignment explanation
Indices: 7243594--7243651 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 20
7243584 GCATGGGTAG
7243594 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TG-T--AGAA
*
7243618 TGCATCGATGAACTGTAGAA
1 TGCATCGATGCACTGTAGAA
7243638 TGCATCGATGCACT
1 TGCATCGATGCACT
7243652 TCAAGGGGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 17 0.53
22 1 0.03
23 2 0.06
24 12 0.38
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (20 bp):
TGCATCGATGCACTGTAGAA
Found at i:7247630 original size:64 final size:63
Alignment explanation
Indices: 7247514--7247654 Score: 162
Period size: 64 Copynumber: 2.2 Consensus size: 63
7247504 CATATTTAAT
* * *
7247514 GTGCATCGATGCACTCTTTAAAGAAGAATCATCGAATGCAATTGGTGCATCGATGCATAAGG-A
1 GTGCATCGATGCACCCTTAAAAGAAGAATCATCGAAGGCAATTGGTGCATCGATGCAT-AGGTA
* * * *
7247577 GTGCATCGATGCATCCCCTTAAAATGAA-AA-CATCGAAGGTAATTTGTGTATCGATGCATGGGT
1 GTGCATCGATGCA--CCCTTAAAA-GAAGAATCATCGAAGGCAATTGGTGCATCGATGCATAGGT
7247640 A
63 A
7247641 GTGCATCGATGCAC
1 GTGCATCGATGCAC
7247655 ATGTTAAAGA
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
62 1 0.01
63 15 0.22
64 39 0.58
65 9 0.13
66 3 0.04
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.26
Consensus pattern (63 bp):
GTGCATCGATGCACCCTTAAAAGAAGAATCATCGAAGGCAATTGGTGCATCGATGCATAGGTA
Found at i:7247687 original size:20 final size:22
Alignment explanation
Indices: 7247642--7247699 Score: 84
Period size: 20 Copynumber: 2.6 Consensus size: 22
7247632 GCATGGGTAG
7247642 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TGTT-AAGAA
7247666 TGCATCGATGCACTG-T-AGAA
1 TGCATCGATGCACTGTTAAGAA
7247686 TGCATCGATGCACT
1 TGCATCGATGCACT
7247700 TCAAGGGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 18 0.53
22 1 0.03
23 2 0.06
24 13 0.38
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (22 bp):
TGCATCGATGCACTGTTAAGAA
Found at i:7255791 original size:10 final size:10
Alignment explanation
Indices: 7255776--7255800 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7255766 CCCACTTTGT
7255776 AAAAAAAGAA
1 AAAAAAAGAA
7255786 AAAAAAAGAA
1 AAAAAAAGAA
7255796 AAAAA
1 AAAAA
7255801 TGAAGTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:7256431 original size:20 final size:20
Alignment explanation
Indices: 7256406--7256448 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
7256396 TCTAAAAGCC
*
7256406 CATTTAGGATCATATAGATG
1 CATTTAGGAGCATATAGATG
*
7256426 CATTTAGGAGCATATAGTTG
1 CATTTAGGAGCATATAGATG
7256446 CAT
1 CAT
7256449 GTGGTGGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (20 bp):
CATTTAGGAGCATATAGATG
Found at i:7265205 original size:6 final size:7
Alignment explanation
Indices: 7265190--7265214 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7265180 CCAAAAGATT
7265190 AAAAGAA
1 AAAAGAA
7265197 AAAAGAA
1 AAAAGAA
7265204 AAAAGAA
1 AAAAGAA
7265211 AAAA
1 AAAA
7265215 AACTCGACGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAGAA
Found at i:7267919 original size:10 final size:10
Alignment explanation
Indices: 7267904--7267951 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
7267894 GACTGAACCT
7267904 TTGACCGACG
1 TTGACCGACG
*
7267914 TTGACCGATG
1 TTGACCGACG
*
7267924 TTGACCGGACCT
1 TTGACC-GA-CG
*
7267936 TTGACCGGCG
1 TTGACCGACG
7267946 TTGACC
1 TTGACC
7267952 TTTTCCGAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
10 22 0.71
11 3 0.10
12 6 0.19
ACGTcount: A:0.17, C:0.29, G:0.29, T:0.25
Consensus pattern (10 bp):
TTGACCGACG
Found at i:7267919 original size:32 final size:32
Alignment explanation
Indices: 7267882--7267951 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
7267872 TTGATTGCCA
*
7267882 TTGACC-ACCATTGACTGAACCTTTGACCGACG
1 TTGACCGA-CATTGACCGAACCTTTGACCGACG
** * *
7267914 TTGACCGATGTTGACCGGACCTTTGACCGGCG
1 TTGACCGACATTGACCGAACCTTTGACCGACG
7267946 TTGACC
1 TTGACC
7267952 TTTTCCGAGT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
32 31 0.97
33 1 0.03
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (32 bp):
TTGACCGACATTGACCGAACCTTTGACCGACG
Found at i:7274286 original size:20 final size:20
Alignment explanation
Indices: 7274261--7274298 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7274251 TTTTGGTACA
*
7274261 GAGGGAATCGATACCCCCAT
1 GAGGGAACCGATACCCCCAT
*
7274281 GAGGGAACCGATTCCCCC
1 GAGGGAACCGATACCCCC
7274299 TTTGAAGGGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.34, G:0.26, T:0.13
Consensus pattern (20 bp):
GAGGGAACCGATACCCCCAT
Found at i:7274341 original size:21 final size:21
Alignment explanation
Indices: 7274304--7274343 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7274294 CCCCCTTTGA
*
7274304 AGGGGAACTGATTCCCCCCAC
1 AGGGGAACTGATACCCCCCAC
7274325 AGGGGAA-TCGATACCCCCC
1 AGGGGAACT-GATACCCCCC
7274344 TGGGGTTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.25, C:0.38, G:0.25, T:0.12
Consensus pattern (21 bp):
AGGGGAACTGATACCCCCCAC
Found at i:7277796 original size:19 final size:19
Alignment explanation
Indices: 7277772--7277810 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
7277762 TCGAATGCAT
7277772 TCTATGCACCGATGCACTC
1 TCTATGCACCGATGCACTC
*
7277791 TCTATGCATCGATGCACTC
1 TCTATGCACCGATGCACTC
7277810 T
1 T
7277811 GATTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.33, G:0.15, T:0.31
Consensus pattern (19 bp):
TCTATGCACCGATGCACTC
Found at i:7277843 original size:64 final size:65
Alignment explanation
Indices: 7277727--7277936 Score: 215
Period size: 64 Copynumber: 3.3 Consensus size: 65
7277717 TGCATAAATA
* *
7277727 CCATGCATCGATGCA-TCAATGGATA--AATTGAAATATCGAATGCATTCT-ATGCACCGATGCA
1 CCATGCATCGATGCACTC--T-GATATTAATTGAAACATCGAATGCATT-TGATGCATCGATGCA
7277788 CTCT
62 CTCT
* *
7277792 CTATGCATCGATGCACTCTGAT-TTAATTAAAACATCGAATGCATTTGATGCATCGATGCAC-CA
1 CCATGCATCGATGCACTCTGATATTAATTGAAACATCGAATGCATTTGATGCATCGATGCACTC-
*
7277855 G
65 T
* * *
7277856 CCATGCATCGATGCACTCAGGCTATT--TTGAAACATCGAATGCACTTGATGCATCGATGCACT-
1 CCATGCATCGATGCACTC-TGATATTAATTGAAACATCGAATGCATTTGATGCATCGATGCACTC
7277918 T
65 T
*
7277919 -GATGCATCGATGCACTCT
1 CCATGCATCGATGCACTCT
7277937 TAGTGCACCG
Statistics
Matches: 124, Mismatches: 13, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
62 16 0.13
63 5 0.04
64 83 0.67
65 16 0.13
66 4 0.03
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (65 bp):
CCATGCATCGATGCACTCTGATATTAATTGAAACATCGAATGCATTTGATGCATCGATGCACTCT
Found at i:7277922 original size:9 final size:9
Alignment explanation
Indices: 7277894--7277953 Score: 54
Period size: 8 Copynumber: 6.8 Consensus size: 9
7277884 GAAACATCGA
*
7277894 ATGCACTTG
1 ATGCACTCG
7277903 ATGCA-TCG
1 ATGCACTCG
*
7277911 ATGCACTTG
1 ATGCACTCG
7277920 ATGCA-TCG
1 ATGCACTCG
*
7277928 ATGCACTCTT
1 ATGCACTC-G
7277938 AGTGCAC-CG
1 A-TGCACTCG
7277947 ATGCACT
1 ATGCACT
7277954 AAGGGTCCAA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
8 19 0.46
9 15 0.37
10 2 0.05
11 5 0.12
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (9 bp):
ATGCACTCG
Found at i:7277948 original size:19 final size:17
Alignment explanation
Indices: 7277888--7277953 Score: 87
Period size: 17 Copynumber: 3.7 Consensus size: 17
7277878 TATTTTGAAA
7277888 CATCGAATGCACTTGATG
1 CATCG-ATGCACTTGATG
7277906 CATCGATGCACTTGATG
1 CATCGATGCACTTGATG
*
7277923 CATCGATGCACTCTTAGTG
1 CATCGATGCACT-TGA-TG
*
7277942 CACCGATGCACT
1 CATCGATGCACT
7277954 AAGGGTCCAA
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
17 24 0.55
18 7 0.16
19 13 0.30
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.27
Consensus pattern (17 bp):
CATCGATGCACTTGATG
Found at i:7280030 original size:20 final size:21
Alignment explanation
Indices: 7279997--7280036 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
7279987 TTTTAACGTA
7279997 ATTGATATTCATTTT-AAACC
1 ATTGATATTCATTTTCAAACC
7280017 ATTGATA-TCAATTTTCAAAC
1 ATTGATATTC-ATTTTCAAAC
7280037 AATTTGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 12 0.67
21 4 0.22
ACGTcount: A:0.38, C:0.15, G:0.05, T:0.42
Consensus pattern (21 bp):
ATTGATATTCATTTTCAAACC
Found at i:7280044 original size:22 final size:20
Alignment explanation
Indices: 7279996--7280040 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7279986 ATTTTAACGT
7279996 AATTGATATTCATTTTAAAC
1 AATTGATATTCATTTTAAAC
*
7280016 CATTGATA-TCAATTTTCAAAC
1 AATTGATATTC-ATTTT-AAAC
7280037 AATT
1 AATT
7280041 TGATTTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 2 0.10
20 12 0.57
21 7 0.33
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.42
Consensus pattern (20 bp):
AATTGATATTCATTTTAAAC
Found at i:7285014 original size:19 final size:19
Alignment explanation
Indices: 7284990--7285028 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
7284980 TCGAATGCAT
7284990 TCTATGCACCGATGCACTC
1 TCTATGCACCGATGCACTC
*
7285009 TCTATGCATCGATGCACTC
1 TCTATGCACCGATGCACTC
7285028 T
1 T
7285029 GATTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.33, G:0.15, T:0.31
Consensus pattern (19 bp):
TCTATGCACCGATGCACTC
Found at i:7285107 original size:64 final size:63
Alignment explanation
Indices: 7284945--7285136 Score: 185
Period size: 64 Copynumber: 3.0 Consensus size: 63
7284935 TGCATAAATA
** *
7284945 CCATGCATCGATGCA-TCAATGGATAAATTGAAACATCGAATGCATTCT-ATGCACCGATGCACT
1 CCATGCATCGATGCACTC---GGATTTATTGAAACATCGAATGCATT-TGATGCATCGATGCACT
*
7285008 CT
62 CG
* * *
7285010 CTATGCATCGATGCACTCTGATTTAATTAAAACATCGAATGCATTTGATGCATCGATGCAC-CAG
1 CCATGCATCGATGCACTCGGATTT-ATTGAAACATCGAATGCATTTGATGCATCGATGCACTC-G
* ** *
7285074 CCATGCATCGATGCACTCGGGCTATT-TTGAAACATCGAATGCGCTTGATGTATCGATGCACTC
1 CCATGCATCGATGCACTC-GGAT-TTATTGAAACATCGAATGCATTTGATGCATCGATGCACTC
7285137 TTAGTGCACC
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
63 5 0.05
64 80 0.75
65 17 0.16
66 4 0.04
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (63 bp):
CCATGCATCGATGCACTCGGATTTATTGAAACATCGAATGCATTTGATGCATCGATGCACTCG
Found at i:7286095 original size:320 final size:323
Alignment explanation
Indices: 7285510--7286156 Score: 1042
Period size: 320 Copynumber: 2.0 Consensus size: 323
7285500 GAATTGTGCA
7285510 AACATCTTACCTTGTGAGTTTTCCTTGTAAGTTTGCAAATTTGTAATCTTCTCTTTGGGAAAAGA
1 AACATCTTACCTTGTGAGTTTTCCTTGTAAGTTTGCAAATTTGTAATCTTCTCTTTGGGAAAAGA
*
7285575 GTGTTCTCAAGAATTGGGGTATATTCTTGAGGGTATTGTAAGGTTATCTCTTTGGCCTCAAAAGA
66 GTGTTCTCAAGAATTGGGGTATATTCTTGAGGGTATTGTAAGGTTATCTCTCTGGCCTCAAAAGA
7285640 AAGAACAAATTAGTGAATTTGTTGGAAAATCCTTAGTGTGGATAGCTAAGGTAGTGGACGTAGAC
131 AAGAACAAATTAGTGAATTTGTTGGAAAATCCTTAGTGTGGATAGCTAAGGTAGTGGACGTAGAC
**
7285705 TTTGATTGAGAAAGTTGAACCACTCTAAATCGCTGTGCAAATCTTTTCAATTTTCTACAAAAGCT
196 TTTGATTGAGAAAGTCAAACCACTCTAAATCGCTGTGCAAATCTTTTCAATTTTCTACAAAAGCT
* * *
7285770 TCCACC-GAATTTTTAATTGCCAATTCACCCCCCTCTTGGCTAATTCCGTCGATCGATTAACTC
261 TCCACCAAAATTTTT-ATTGCCAATTCACCCCCCTCTTGGCCAATTCCGTCAATCGATTAACTC
* * *
7285833 AACATC-TACCTTGTGAGGATTTT-CTTGTAAGTTTGCAAATTTGTATTGTTCTCTTTGGG-AGA
1 AACATCTTACCTTGTGA-G-TTTTCCTTGTAAGTTTGCAAATTTGTAATCTTCTCTTTGGGAAAA
* *
7285895 GAGTGTTCTCAAGAATTTGGGGTATAATTCTTGAGGGT-TTGTAAGGTTA-CTCTCTGTCCTTAA
64 GAGTGTTCTCAAGAA-TTGGGGTAT-ATTCTTGAGGGTATTGTAAGGTTATCTCTCTGGCCTCAA
7285958 AAGAAAG-ACAAATTAGTGAATTTG-TGGAAAATCCTTAGTGTGGATAGCTAAGGTAGTGGACGT
127 AAGAAAGAACAAATTAGTGAATTTGTTGGAAAATCCTTAGTGTGGATAGCTAAGGTAGTGGACGT
* * *
7286021 AGACTTTGGTTGAGAAAGTCAAACCACTCTAAATCGCTGTGC-AATTTCTTTCAATTTTCTGCAA
192 AGACTTTGATTGAGAAAGTCAAACCACTCTAAATCGCTGTGCAAATCT-TTTCAATTTTCTACAA
*
7286085 AAGCTTCCACCAAAATTTTTATTTCCAATTCACCCCCCTCTTGGCCAATTCCGTCAATCGATTAA
256 AAGCTTCCACCAAAATTTTTATTGCCAATTCACCCCCCTCTTGGCCAATTCCGTCAATCGATTAA
7286150 CTC
321 CTC
7286153 AACA
1 AACA
7286157 GAATAGAGTT
Statistics
Matches: 303, Mismatches: 15, Indels: 15
0.91 0.05 0.05
Matches are distributed among these distances:
319 4 0.01
320 153 0.50
321 24 0.08
322 45 0.15
323 61 0.20
324 16 0.05
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (323 bp):
AACATCTTACCTTGTGAGTTTTCCTTGTAAGTTTGCAAATTTGTAATCTTCTCTTTGGGAAAAGA
GTGTTCTCAAGAATTGGGGTATATTCTTGAGGGTATTGTAAGGTTATCTCTCTGGCCTCAAAAGA
AAGAACAAATTAGTGAATTTGTTGGAAAATCCTTAGTGTGGATAGCTAAGGTAGTGGACGTAGAC
TTTGATTGAGAAAGTCAAACCACTCTAAATCGCTGTGCAAATCTTTTCAATTTTCTACAAAAGCT
TCCACCAAAATTTTTATTGCCAATTCACCCCCCTCTTGGCCAATTCCGTCAATCGATTAACTC
Found at i:7286589 original size:15 final size:15
Alignment explanation
Indices: 7286571--7286605 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
7286561 TGAGAGAAAA
7286571 TACTTTGAGGAATCG
1 TACTTTGAGGAATCG
*
7286586 TACTTTGAGGAATTG
1 TACTTTGAGGAATCG
7286601 TACTT
1 TACTT
7286606 AACTTGATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (15 bp):
TACTTTGAGGAATCG
Found at i:7288634 original size:88 final size:88
Alignment explanation
Indices: 7288485--7288725 Score: 340
Period size: 88 Copynumber: 2.7 Consensus size: 88
7288475 GGTAAGACCT
* *
7288485 TACGGACCTAAAGATACCCTTGGGTAGG-CTCATAGGCCCCAAGGAATATCCTTAGGTTGGTTCT
1 TACGGACCTAAGGATACCCTTGGGTAGGCCT-ATAGGCCCCAAGGAATATCCTTAGGTTGGTTCC
*
7288549 CTTGCTGTGTGCTTAGGGTAACCC
65 CTTACTGTGTGCTTAGGGTAACCC
* * * *
7288573 TACGGACTTAAGGATACCCTTGGGTAGGCCTATAGGCCTCAAGGTATATTCTTAGGTTGGTTCCC
1 TACGGACCTAAGGATACCCTTGGGTAGGCCTATAGGCCCCAAGGAATATCCTTAGGTTGGTTCCC
* *
7288638 TTATTGTGTTCTTAGGGTAACCC
66 TTACTGTGTGCTTAGGGTAACCC
* * * *
7288661 TATGGACCTAAGGATACCCTTGGGTATGCCCATAGACCCCAAGGAATATCCTTAGGTTGGCTTCC
1 TACGGACCTAAGGATACCCTTGGGTAGGCCTATAGGCCCCAAGGAATATCCTTAGGTTGG-TTCC
7288726 TTTTTATTGT
Statistics
Matches: 134, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
88 128 0.96
89 6 0.04
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (88 bp):
TACGGACCTAAGGATACCCTTGGGTAGGCCTATAGGCCCCAAGGAATATCCTTAGGTTGGTTCCC
TTACTGTGTGCTTAGGGTAACCC
Found at i:7290426 original size:51 final size:51
Alignment explanation
Indices: 7290312--7290418 Score: 130
Period size: 51 Copynumber: 2.1 Consensus size: 51
7290302 TCACATACCA
* **
7290312 CATGTATATGTAATCATATATCTCATATCATATAACATGTAACATATATCT
1 CATGTGTATGTAATCATATAAATCATATCATATAACATGTAACATATATCT
* * *
7290363 CATGTGCATGTAATCATATAAATCGTATCATATAAC-T-TATA-TTATATCT
1 CATGTGTATGTAATCATATAAATCATATCATATAACATGTA-ACATATATCT
7290412 CATGTGT
1 CATGTGT
7290419 TTATGTAAAC
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
49 15 0.31
50 2 0.04
51 31 0.65
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.40
Consensus pattern (51 bp):
CATGTGTATGTAATCATATAAATCATATCATATAACATGTAACATATATCT
Found at i:7293372 original size:16 final size:16
Alignment explanation
Indices: 7293351--7293398 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
7293341 ACCTGTTGAC
*
7293351 CGTTAATCGTTGACCG
1 CGTTAACCGTTGACCG
*
7293367 CGTTAACCGTTGACTG
1 CGTTAACCGTTGACCG
* *
7293383 CGTTGACCATTGACCG
1 CGTTAACCGTTGACCG
7293399 TTGCTGACCG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.19, C:0.27, G:0.25, T:0.29
Consensus pattern (16 bp):
CGTTAACCGTTGACCG
Found at i:7295418 original size:20 final size:20
Alignment explanation
Indices: 7295393--7295437 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
7295383 TGTTATCCAT
*
7295393 ACTGATAATTAAAAAATGCC
1 ACTGATAACTAAAAAATGCC
*
7295413 ACTGATAACTACAAAATGCC
1 ACTGATAACTAAAAAATGCC
*
7295433 GCTGA
1 ACTGA
7295438 AAAATACTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.44, C:0.20, G:0.13, T:0.22
Consensus pattern (20 bp):
ACTGATAACTAAAAAATGCC
Found at i:7296142 original size:88 final size:88
Alignment explanation
Indices: 7295981--7296251 Score: 371
Period size: 88 Copynumber: 3.0 Consensus size: 88
7295971 GGTAATACCT
** * *
7295981 TACGGACCTAAGGATACCCTTGGGTAGGCTCATAGGCCCCAAAACATATCCTTAGGTTAGTTCAA
1 TACGGACCTAAGGATACCCTTGGGTAGGCTCATAGGCCCCAAGGCATATCCTTAGGTTGGTTCCA
*
7296046 TTGTTGTGTGCTTAGGGTAACCC
66 TTGCTGTGTGCTTAGGGTAACCC
* * * *
7296069 TACGGACTTAAGGATACCCTTGGGTAGGCCCATAGGCCCCAAGGCATATTCTTAGGTTGGTTCCC
1 TACGGACCTAAGGATACCCTTGGGTAGGCTCATAGGCCCCAAGGCATATCCTTAGGTTGGTTCCA
*
7296134 TTACTGTGTGCTTAGGGTAACCC
66 TTGCTGTGTGCTTAGGGTAACCC
* * *
7296157 TACGGACCTAAGGATACCCTTGGGTAGACTCATAGGCACCAAGGAATATCCTTAGGTTGGCTTCC
1 TACGGACCTAAGGATACCCTTGGGTAGGCTCATAGGCCCCAAGGCATATCCTTAGGTTGG-TTCC
* *
7296222 TTTTTGCTGTGTGCTGAGGGTAAACCC
65 --ATTGCTGTGTGCTTAGGGT-AACCC
7296249 TAC
1 TAC
7296252 TGATGCAATT
Statistics
Matches: 160, Mismatches: 19, Indels: 4
0.87 0.10 0.02
Matches are distributed among these distances:
88 132 0.82
89 4 0.03
91 16 0.10
92 8 0.05
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (88 bp):
TACGGACCTAAGGATACCCTTGGGTAGGCTCATAGGCCCCAAGGCATATCCTTAGGTTGGTTCCA
TTGCTGTGTGCTTAGGGTAACCC
Found at i:7296765 original size:20 final size:22
Alignment explanation
Indices: 7296723--7296767 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
7296713 CTGAAAATCT
*
7296723 ATTTTAATTTCGAATATTGATAA
1 ATTTTAATTTCG-ATATTCATAA
7296746 ATTTT-ATTTCG-TATTCATAA
1 ATTTTAATTTCGATATTCATAA
7296766 AT
1 AT
7296768 GATTTTATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 10 0.48
22 6 0.29
23 5 0.24
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.51
Consensus pattern (22 bp):
ATTTTAATTTCGATATTCATAA
Found at i:7299202 original size:21 final size:22
Alignment explanation
Indices: 7299152--7299206 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 22
7299142 TAAAAATTCA
7299152 AATTAAATTCAAA-CTCAAATT
1 AATTAAATTCAAATCTCAAATT
* *
7299173 AA-AATAATTCAAATCT-TAATT
1 AATTA-AATTCAAATCTCAAATT
7299194 AATTAAATT-AAAT
1 AATTAAATTCAAAT
7299207 TTATTTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
20 5 0.18
21 20 0.71
22 3 0.11
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (22 bp):
AATTAAATTCAAATCTCAAATT
Found at i:7299601 original size:17 final size:18
Alignment explanation
Indices: 7299572--7299610 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7299562 TAAAATGTTA
7299572 TTTTAAATAATTA-TATT
1 TTTTAAATAATTATTATT
7299589 TTTTATAAT-ATTATTATT
1 TTTTA-AATAATTATTATT
7299607 TTTT
1 TTTT
7299611 TCATCCTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTAAATAATTATTATT
Found at i:7299638 original size:15 final size:14
Alignment explanation
Indices: 7299618--7299660 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
7299608 TTTTCATCCT
7299618 ATAAAATTATAAATA
1 ATAAAA-TATAAATA
7299633 ATAAAATATTAAATA
1 ATAAAATA-TAAATA
*
7299648 TTAAAAATATAAA
1 AT-AAAATATAAA
7299661 ATATTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 2 0.08
15 17 0.68
16 6 0.24
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAAAATATAAATA
Found at i:7299671 original size:16 final size:16
Alignment explanation
Indices: 7299635--7299665 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7299625 TATAAATAAT
*
7299635 AAAATATTAAATATTA
1 AAAATATAAAATATTA
7299651 AAAATATAAAATATT
1 AAAATATAAAATATT
7299666 TTAAATTATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAATATAAAATATTA
Found at i:7299673 original size:23 final size:23
Alignment explanation
Indices: 7299619--7299665 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
7299609 TTTCATCCTA
*
7299619 TAAAATTATAAATAATAAAATAT
1 TAAAATTAAAAATAATAAAATAT
7299642 TAAATATTAAAAAT-ATAAAATAT
1 TAAA-ATTAAAAATAATAAAATAT
7299665 T
1 T
7299666 TTAAATTATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (23 bp):
TAAAATTAAAAATAATAAAATAT
Found at i:7309480 original size:13 final size:13
Alignment explanation
Indices: 7309462--7309495 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
7309452 GGAGGGGGTG
*
7309462 AATGATTGAAATA
1 AATGATTAAAATA
7309475 AATGATTTAAAATA
1 AATGA-TTAAAATA
7309489 AATGATT
1 AATGATT
7309496 CTTTTATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (13 bp):
AATGATTAAAATA
Found at i:7321708 original size:19 final size:19
Alignment explanation
Indices: 7321684--7321722 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
7321674 AGACCCATGT
7321684 AAGCCGAGTGTGATCATCA
1 AAGCCGAGTGTGATCATCA
7321703 AAGCCGAGTGTGATCATCA
1 AAGCCGAGTGTGATCATCA
7321722 A
1 A
7321723 TAAATGTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.21
Consensus pattern (19 bp):
AAGCCGAGTGTGATCATCA
Found at i:7326571 original size:21 final size:21
Alignment explanation
Indices: 7326547--7326646 Score: 73
Period size: 21 Copynumber: 4.8 Consensus size: 21
7326537 CTGGTTACAG
*
7326547 CAGTCCATCATCCCCTGGGTA
1 CAGTCCATCATCACCTGGGTA
* *
7326568 CAGTCC-TACTTCGCCTGGGTA
1 CAGTCCAT-CATCACCTGGGTA
* *
7326589 CAGCCCCACCA-CACCTGGGTA
1 CAG-TCCATCATCACCTGGGTA
*
7326610 CAGTCC-TACCTCACCTGGGTA
1 CAGTCCAT-CATCACCTGGGTA
*
7326631 CAGCCCCA-CATCACCT
1 CAG-TCCATCATCACCT
7326647 ACTTACAGTC
Statistics
Matches: 61, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
20 4 0.07
21 52 0.85
22 5 0.08
ACGTcount: A:0.20, C:0.42, G:0.18, T:0.20
Consensus pattern (21 bp):
CAGTCCATCATCACCTGGGTA
Found at i:7326646 original size:42 final size:43
Alignment explanation
Indices: 7326555--7326678 Score: 153
Period size: 42 Copynumber: 2.9 Consensus size: 43
7326545 AGCAGTCCAT
* *
7326555 CATCCCCTGGGTACAGTCCTACTTCGCCTGGGTACAGCCCCAC
1 CATCACCTGGGTACAGTCCTACTTCACCTGGGTACAGCCCCAC
*
7326598 CA-CACCTGGGTACAGTCCTACCTCACCTGGGTACAGCCCCA-
1 CATCACCTGGGTACAGTCCTACTTCACCTGGGTACAGCCCCAC
*** * * *
7326639 CATCACCTACTTACAGTCCTAGTTCACCAGGTTACAGCCC
1 CATCACCTGGGTACAGTCCTACTTCACCTGGGTACAGCCC
7326679 AACAAGTCCA
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 2 0.03
42 66 0.94
43 2 0.03
ACGTcount: A:0.21, C:0.40, G:0.18, T:0.21
Consensus pattern (43 bp):
CATCACCTGGGTACAGTCCTACTTCACCTGGGTACAGCCCCAC
Found at i:7326755 original size:21 final size:21
Alignment explanation
Indices: 7326719--7326856 Score: 165
Period size: 21 Copynumber: 6.6 Consensus size: 21
7326709 CACTTATTCT
* * * *
7326719 CCAACCTCACCGAGCTACATC
1 CCAACTTCACCTAGCTATAGC
*
7326740 CCTACTTCACCTAGCTATAGTC
1 CCAACTTCACCTAGCTATAG-C
*
7326762 CC-ACTTCACCTAGCTACAGC
1 CCAACTTCACCTAGCTATAGC
*
7326782 CCTACTTCACCTAGCTATAGC
1 CCAACTTCACCTAGCTATAGC
7326803 CCAACTTCACC-AGCATATAGC
1 CCAACTTCACCTAGC-TATAGC
7326824 CCAACTTCACC-AGCATATAGC
1 CCAACTTCACCTAGC-TATAGC
7326845 CCAACTTCACCT
1 CCAACTTCACCT
7326857 TCATATAGTC
Statistics
Matches: 105, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
20 6 0.06
21 96 0.91
22 3 0.03
ACGTcount: A:0.28, C:0.41, G:0.09, T:0.22
Consensus pattern (21 bp):
CCAACTTCACCTAGCTATAGC
Found at i:7326785 original size:42 final size:42
Alignment explanation
Indices: 7326719--7326856 Score: 183
Period size: 42 Copynumber: 3.3 Consensus size: 42
7326709 CACTTATTCT
* * *
7326719 CCAACCTCACCGAGCTACATCCCTACTTCACCTAGCTATAGTC
1 CCAACTTCACCTAGCTACAGCCCTACTTCACCTAGCTATAG-C
7326762 CC-ACTTCACCTAGCTACAGCCCTACTTCACCTAGCTATAGC
1 CCAACTTCACCTAGCTACAGCCCTACTTCACCTAGCTATAGC
* *
7326803 CCAACTTCACC-AGCATATAGCCCAACTTCACC-AGCATATAGC
1 CCAACTTCACCTAGC-TACAGCCCTACTTCACCTAGC-TATAGC
7326845 CCAACTTCACCT
1 CCAACTTCACCT
7326857 TCATATAGTC
Statistics
Matches: 86, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
41 9 0.10
42 75 0.87
43 2 0.02
ACGTcount: A:0.28, C:0.41, G:0.09, T:0.22
Consensus pattern (42 bp):
CCAACTTCACCTAGCTACAGCCCTACTTCACCTAGCTATAGC
Found at i:7326810 original size:63 final size:63
Alignment explanation
Indices: 7326719--7326909 Score: 176
Period size: 63 Copynumber: 3.0 Consensus size: 63
7326709 CACTTATTCT
* * * *
7326719 CCAACCTCACCGAGCTACATCCCTACTTCACCTAGC-TATAGTCCC-ACTTCACCTAGC-TACAG
1 CCAACTTCACCTAGCTACAGCCCAACTTCACC-AGCATATAG-CCCAACTTCACC-AGCATACAG
7326781 C
63 C
* * *
7326782 CCTACTTCACCTAGCTATAGCCCAACTTCACCAGCATATAGCCCAACTTCACCAGCATATAGC
1 CCAACTTCACCTAGCTACAGCCCAACTTCACCAGCATATAGCCCAACTTCACCAGCATACAGC
* * * * * * *
7326845 CCAACTTCACCT-TCATATAGTCCC-ACTTCTCCATCATATAGCCCAACGTCTCCATCATACAGC
1 CCAACTTCACCTAGC-TACAG-CCCAACTTCACCAGCATATAGCCCAACTTCACCAGCATACAGC
7326908 CC
1 CC
7326910 GCCATCTCCT
Statistics
Matches: 108, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
62 10 0.09
63 95 0.88
64 3 0.03
ACGTcount: A:0.27, C:0.41, G:0.08, T:0.24
Consensus pattern (63 bp):
CCAACTTCACCTAGCTACAGCCCAACTTCACCAGCATATAGCCCAACTTCACCAGCATACAGC
Found at i:7326861 original size:21 final size:21
Alignment explanation
Indices: 7326779--7326981 Score: 158
Period size: 21 Copynumber: 9.7 Consensus size: 21
7326769 ACCTAGCTAC
* *
7326779 AGCCCTACTTCACCTAGC-TAT
1 AGCCCAACTTCACC-ATCATAT
*
7326800 AGCCCAACTTCACCAGCATAT
1 AGCCCAACTTCACCATCATAT
*
7326821 AGCCCAACTTCACCAGCATAT
1 AGCCCAACTTCACCATCATAT
*
7326842 AGCCCAACTTCACCTTCATAT
1 AGCCCAACTTCACCATCATAT
*
7326863 AGTCCC-ACTTCTCCATCATAT
1 AG-CCCAACTTCACCATCATAT
* * *
7326884 AGCCCAACGTCTCCATCATAC
1 AGCCCAACTTCACCATCATAT
** * * * * *
7326905 AGCCCGCCATCTCCTTCCTAC
1 AGCCCAACTTCACCATCATAT
* * *
7326926 AGCCCAACCTCACCCTCCTAT
1 AGCCCAACTTCACCATCATAT
* * * *
7326947 AGCCCTACATCTCCATCTTAT
1 AGCCCAACTTCACCATCATAT
*
7326968 AGCCCCACTTCACC
1 AGCCCAACTTCACC
7326982 GGCTTATAGC
Statistics
Matches: 153, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
20 6 0.04
21 144 0.94
22 3 0.02
ACGTcount: A:0.26, C:0.43, G:0.07, T:0.24
Consensus pattern (21 bp):
AGCCCAACTTCACCATCATAT
Found at i:7326862 original size:42 final size:41
Alignment explanation
Indices: 7326719--7326909 Score: 167
Period size: 42 Copynumber: 4.6 Consensus size: 41
7326709 CACTTATTCT
* *
7326719 CCAACCTCACCGAGC-TACATCCCTACTTCACCTAGCTATAGTC
1 CCAACTTCACC-AGCATACAGCCC-ACTTCACCTAGCTATAG-C
7326762 CC-ACTTCACCTAGC-TACAGCCCTACTTCACCTAGCTATAGC
1 CCAACTTCACC-AGCATACAGCCC-ACTTCACCTAGCTATAGC
*
7326803 CCAACTTCACCAGCATATAGCCCAACTTCACC-AGCATATAGC
1 CCAACTTCACCAGCATACAGCCC-ACTTCACCTAGC-TATAGC
** * * *
7326845 CCAACTTCACCTTCATATAGTCCCACTTCTCC-ATCATATAGC
1 CCAACTTCACCAGCATACAG-CCCACTTCACCTAGC-TATAGC
* * *
7326887 CCAACGTCTCCATCATACAGCCC
1 CCAACTTCACCAGCATACAGCCC
7326910 GCCATCTCCT
Statistics
Matches: 131, Mismatches: 13, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
41 12 0.09
42 114 0.87
43 5 0.04
ACGTcount: A:0.27, C:0.41, G:0.08, T:0.24
Consensus pattern (41 bp):
CCAACTTCACCAGCATACAGCCCACTTCACCTAGCTATAGC
Found at i:7326921 original size:63 final size:63
Alignment explanation
Indices: 7326743--7326939 Score: 161
Period size: 63 Copynumber: 3.1 Consensus size: 63
7326733 CTACATCCCT
* * * *
7326743 ACTTCACCTAGC-TATAGTCCC-ACTTCACCTAGC-TACAGCCCTACTTCACCTAGC-TATAGCC
1 ACTTCACC-AGCATATAG-CCCAACGTCACC-AGCATACAGCCCAACATCACCT-TCATATAGCC
7326804 CA
62 CA
* * *
7326806 ACTTCACCAGCATATAGCCCAACTTCACCAGCATATAGCCCAACTTCACCTTCATATAGTCCC-
1 ACTTCACCAGCATATAGCCCAACGTCACCAGCATACAGCCCAACATCACCTTCATATAG-CCCA
* * * * ** * * *
7326869 ACTTCTCCATCATATAGCCCAACGTCTCCATCATACAGCCCGCCATCTCCTTCCTACAGCCCA
1 ACTTCACCAGCATATAGCCCAACGTCACCAGCATACAGCCCAACATCACCTTCATATAGCCCA
*
7326932 ACCTCACC
1 ACTTCACC
7326940 CTCCTATAGC
Statistics
Matches: 111, Mismatches: 17, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
62 13 0.12
63 95 0.86
64 3 0.03
ACGTcount: A:0.26, C:0.42, G:0.08, T:0.24
Consensus pattern (63 bp):
ACTTCACCAGCATATAGCCCAACGTCACCAGCATACAGCCCAACATCACCTTCATATAGCCCA
Found at i:7326987 original size:21 final size:22
Alignment explanation
Indices: 7326963--7327014 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 22
7326953 ACATCTCCAT
7326963 CTTATAGCCCCACTTCACC-GG
1 CTTATAGCCCCACTTCACCAGG
* *
7326984 CTTATAGCCCCAGTTCTCCAGG
1 CTTATAGCCCCACTTCACCAGG
7327006 C-TATAGCCC
1 CTTATAGCCC
7327015 TACCTCTCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 25 0.89
22 3 0.11
ACGTcount: A:0.19, C:0.40, G:0.15, T:0.25
Consensus pattern (22 bp):
CTTATAGCCCCACTTCACCAGG
Found at i:7327022 original size:21 final size:20
Alignment explanation
Indices: 7326943--7327066 Score: 70
Period size: 21 Copynumber: 6.0 Consensus size: 20
7326933 CCTCACCCTC
*
7326943 CTATAGCCCTACATCTCCAT
1 CTATAGCCCTACATCTCCAG
* * * *
7326963 CTTATAGCCCCACTTCACCGG
1 C-TATAGCCCTACATCTCCAG
* **
7326984 CTTATAGCCCCAGTTCTCCAGG
1 C-TATAGCCCTACATCTCCA-G
*
7327006 CTATAGCCCTACCTCTCCAAG
1 CTATAGCCCTACATCTCC-AG
* * *
7327027 TTATAGTCCC-ACATCACCTAC
1 CTATAG-CCCTACATCTCC-AG
*
7327048 CTATAGCCCTACCTCTCCA
1 CTATAGCCCTACATCTCCA
7327067 AGTTACAATC
Statistics
Matches: 80, Mismatches: 19, Indels: 10
0.73 0.17 0.09
Matches are distributed among these distances:
20 5 0.06
21 69 0.86
22 6 0.08
ACGTcount: A:0.23, C:0.41, G:0.10, T:0.27
Consensus pattern (20 bp):
CTATAGCCCTACATCTCCAG
Found at i:7327065 original size:63 final size:63
Alignment explanation
Indices: 7326943--7327066 Score: 149
Period size: 63 Copynumber: 2.0 Consensus size: 63
7326933 CCTCACCCTC
* * * * **
7326943 CTATAGCCCTACATCTCCATCTTATAGCCCCACTTCACCGGCTTATAGCCCCAGTTCTCCAGG
1 CTATAGCCCTACATCTCCAACTTATAGCCCCACATCACCGACCTATAGCCCCACCTCTCCAGG
* * * * *
7327006 CTATAGCCCTACCTCTCCAAGTTATAGTCCCACATCACCTACCTATAGCCCTACCTCTCCA
1 CTATAGCCCTACATCTCCAACTTATAGCCCCACATCACCGACCTATAGCCCCACCTCTCCA
7327067 AGTTACAATC
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
63 50 1.00
ACGTcount: A:0.23, C:0.41, G:0.10, T:0.27
Consensus pattern (63 bp):
CTATAGCCCTACATCTCCAACTTATAGCCCCACATCACCGACCTATAGCCCCACCTCTCCAGG
Found at i:7331526 original size:37 final size:38
Alignment explanation
Indices: 7331445--7331526 Score: 89
Period size: 38 Copynumber: 2.2 Consensus size: 38
7331435 TAACAAGTTG
**
7331445 AAAAATATATATATATTTTCTTTAAAAATTTTAAATTC
1 AAAAATATATATATATTTTCTTTAAAAATTGAAAATTC
*
7331483 ATAAAATTTATATA-ATTTT-TTTACAAAATTGAAAATAT-
1 A-AAAATATATATATATTTTCTTTA-AAAATTGAAAAT-TC
7331521 AAAAAT
1 AAAAAT
7331527 GTTTAATGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
37 9 0.24
38 17 0.45
39 12 0.32
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (38 bp):
AAAAATATATATATATTTTCTTTAAAAATTGAAAATTC
Found at i:7332182 original size:36 final size:37
Alignment explanation
Indices: 7332110--7332183 Score: 89
Period size: 36 Copynumber: 2.0 Consensus size: 37
7332100 GTTAGAAAAT
*
7332110 ATTTATATACTTTCTTTAAAAAAATTAAATTCATAAA
1 ATTTATATACTTTCTTTAAAAAAATTAAAATCATAAA
* * *
7332147 ATTTATATA-TTTTTTTTACAAAATTAAAAAT-ATAAA
1 ATTTATATACTTTCTTTAAAAAAATT-AAAATCATAAA
7332183 A
1 A
7332184 AGGTTTAATG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
36 19 0.59
37 13 0.41
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (37 bp):
ATTTATATACTTTCTTTAAAAAAATTAAAATCATAAA
Found at i:7333049 original size:37 final size:37
Alignment explanation
Indices: 7332999--7333069 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
7332989 TATCGAGCTC
*
7332999 TCGACAATTATGCAAAGCCTGTTAATCAGTTGTTGTT
1 TCGACAATTATGCAAAGCCTGTTAATAAGTTGTTGTT
7333036 TCGACAATTATGCAAAGCCTGTTAATAAGTTGTT
1 TCGACAATTATGCAAAGCCTGTTAATAAGTTGTT
7333070 TCATCAATCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.37
Consensus pattern (37 bp):
TCGACAATTATGCAAAGCCTGTTAATAAGTTGTTGTT
Found at i:7338769 original size:2 final size:2
Alignment explanation
Indices: 7338762--7338801 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7338752 TTGCACATGC
7338762 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7338802 TCCAATTCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.