Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007961.1 Hibiscus syriacus cultivar Beakdansim tig00110388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2700559
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 11 of 12
Found at i:2331925 original size:2 final size:2
Alignment explanation
Indices: 2331872--2331905 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
2331862 ATGTAGAACC
*
2331872 TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2331906 CACTTTCAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2331979 original size:16 final size:16
Alignment explanation
Indices: 2331958--2331991 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
2331948 AATCGTTTTG
2331958 ATCTCAATCTTACCCC
1 ATCTCAATCTTACCCC
2331974 ATCTCAATCTTACCCC
1 ATCTCAATCTTACCCC
2331990 AT
1 AT
2331992 ATAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.41, G:0.00, T:0.32
Consensus pattern (16 bp):
ATCTCAATCTTACCCC
Found at i:2335880 original size:64 final size:64
Alignment explanation
Indices: 2335779--2335905 Score: 236
Period size: 64 Copynumber: 2.0 Consensus size: 64
2335769 CAAAAGGAAT
* *
2335779 GCAACCTAGAAATTTAGAACTGAAAGCAATACCTTCTTTTTCAAATTTGAAGTAGAGCTTTTCG
1 GCAACCTAGAAATTTAGAACTGAAAGCAATACCTTCTTTTTCAAATTTGAAGGAAAGCTTTTCG
2335843 GCAACCTAGAAATTTAGAACTGAAAGCAATACCTTCTTTTTCAAATTTGAAGGAAAGCTTTTC
1 GCAACCTAGAAATTTAGAACTGAAAGCAATACCTTCTTTTTCAAATTTGAAGGAAAGCTTTTC
2335906 AACAAACCAG
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.32
Consensus pattern (64 bp):
GCAACCTAGAAATTTAGAACTGAAAGCAATACCTTCTTTTTCAAATTTGAAGGAAAGCTTTTCG
Found at i:2337747 original size:15 final size:15
Alignment explanation
Indices: 2337729--2337758 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
2337719 ACAATTACAT
2337729 GCTTAAACCCAGAAA
1 GCTTAAACCCAGAAA
2337744 GCTTAAACCCAGAAA
1 GCTTAAACCCAGAAA
2337759 TAATCAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.27, G:0.13, T:0.13
Consensus pattern (15 bp):
GCTTAAACCCAGAAA
Found at i:2347440 original size:28 final size:28
Alignment explanation
Indices: 2347382--2347444 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
2347372 TACAAAGTAA
* *
2347382 AATATAAATTCATTAACTTTATATATTT
1 AATATAAATTAATTAACTTTATATATCT
**
2347410 AATATAAATTAAATTAGTTTTATATA-CT
1 AATATAAATT-AATTAACTTTATATATCT
2347438 AATATAA
1 AATATAA
2347445 TTTTTTATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 18 0.60
29 12 0.40
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.46
Consensus pattern (28 bp):
AATATAAATTAATTAACTTTATATATCT
Found at i:2350987 original size:11 final size:12
Alignment explanation
Indices: 2350947--2350990 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
2350937 TATTTAAACG
*
2350947 GGTATTGGGCCA
1 GGTATTGGGTCA
*
2350959 GGTATTGGGTCG
1 GGTATTGGGTCA
2350971 GGTATTGGGTC-
1 GGTATTGGGTCA
2350982 GGTATTGGG
1 GGTATTGGG
2350991 CTGGGAATCG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
11 9 0.30
12 21 0.70
ACGTcount: A:0.11, C:0.09, G:0.48, T:0.32
Consensus pattern (12 bp):
GGTATTGGGTCA
Found at i:2350989 original size:23 final size:24
Alignment explanation
Indices: 2350945--2350990 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
2350935 ATTATTTAAA
2350945 CGGGTATTGGGCCAGGTATTGGGT
1 CGGGTATTGGGCCAGGTATTGGGT
*
2350969 CGGGTATTGGGTC-GGTATTGGG
1 CGGGTATTGGGCCAGGTATTGGG
2350991 CTGGGAATCG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.11, C:0.11, G:0.48, T:0.30
Consensus pattern (24 bp):
CGGGTATTGGGCCAGGTATTGGGT
Found at i:2351068 original size:24 final size:25
Alignment explanation
Indices: 2351008--2351068 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 25
2350998 TCGGGCCGGG
2351008 TATATA-TATA-TATTTAAATTAAA
1 TATATATTATATTATTTAAATTAAA
*
2351031 TATATATT-TTTTATTTAAATTAAA
1 TATATATTATATTATTTAAATTAAA
2351055 T-T-TATTAATATTAT
1 TATATATT-ATATTAT
2351069 ATATATATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
22 4 0.12
23 8 0.25
24 20 0.62
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (25 bp):
TATATATTATATTATTTAAATTAAA
Found at i:2351160 original size:13 final size:13
Alignment explanation
Indices: 2351104--2351147 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
2351094 TTTAATATTT
*
2351104 ATCGGGTCGGGT-
1 ATCGGGGCGGGTA
2351116 ATCGGGGCGGGTA
1 ATCGGGGCGGGTA
2351129 ATCGGGGCGGGTA
1 ATCGGGGCGGGTA
2351142 ATCGGG
1 ATCGGG
2351148 TAATCGGGGC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
12 11 0.37
13 19 0.63
ACGTcount: A:0.14, C:0.16, G:0.52, T:0.18
Consensus pattern (13 bp):
ATCGGGGCGGGTA
Found at i:2365519 original size:20 final size:21
Alignment explanation
Indices: 2365487--2365526 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
2365477 CCAACTTAAT
2365487 ACATATATTTCGTATCCATAC
1 ACATATATTTCGTATCCATAC
2365508 ACATAT-TTTCGTATCCATA
1 ACATATATTTCGTATCCATA
2365527 AAATTTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.40
Consensus pattern (21 bp):
ACATATATTTCGTATCCATAC
Found at i:2366432 original size:23 final size:23
Alignment explanation
Indices: 2366357--2366432 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
2366347 TGTATCCAAC
2366357 TAATTTTGATATTTGAATTACAT
1 TAATTTTGATATTTGAATTACAT
* * * *
2366380 TAA-TATGACTCATATATGTA-TCCAAC
1 TAATTTTGA-T-AT-T-TGAATTAC-AT
2366406 TAATTTTGATATTTGAATTACAT
1 TAATTTTGATATTTGAATTACAT
2366429 TAAT
1 TAAT
2366433 ATGACTCATA
Statistics
Matches: 38, Mismatches: 8, Indels: 14
0.63 0.13 0.23
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 5 0.13
25 5 0.13
26 8 0.21
27 4 0.11
ACGTcount: A:0.37, C:0.09, G:0.08, T:0.46
Consensus pattern (23 bp):
TAATTTTGATATTTGAATTACAT
Found at i:2366441 original size:49 final size:49
Alignment explanation
Indices: 2366346--2366443 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
2366336 TGTGTTAGGC
2366346 ATGTATCCAACTAATTTTGATATTTGAATTACATTAATATGACTCATAT
1 ATGTATCCAACTAATTTTGATATTTGAATTACATTAATATGACTCATAT
2366395 ATGTATCCAACTAATTTTGATATTTGAATTACATTAATATGACTCATAT
1 ATGTATCCAACTAATTTTGATATTTGAATTACATTAATATGACTCATAT
2366444 CCTGATCAGA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.37, C:0.12, G:0.08, T:0.43
Consensus pattern (49 bp):
ATGTATCCAACTAATTTTGATATTTGAATTACATTAATATGACTCATAT
Found at i:2379688 original size:6 final size:6
Alignment explanation
Indices: 2379677--2379701 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
2379667 ATTGATACCT
2379677 TTTGCA TTTGCA TTTGCA TTTGCA T
1 TTTGCA TTTGCA TTTGCA TTTGCA T
2379702 CTTTGCATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TTTGCA
Found at i:2388587 original size:136 final size:136
Alignment explanation
Indices: 2387968--2388583 Score: 932
Period size: 136 Copynumber: 4.5 Consensus size: 136
2387958 AGGTGAACCA
* * * * *
2387968 ACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGATAGAGGGAGAAGAAATTCACATT
1 ACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * *** **
2388033 GAGAAGAGCTTGTTCGACCTATCACTCGATTCATGGTATTTCGAATCAGTGATGTCTTGCTTGAG
66 GAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACACCTCACTTGAG
**
2388098 GGATCA
131 GGATTG
* * * **
2388104 ACATTTCC-AGTGAAAAGTTCATAATGAGAAGAACTCATCCAACAGAAAGAGAAGAAGTTCATAA
1 ACATTTCCAATTG-AGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAA
* *
2388168 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGGTATTTTGAATCAGTGACACCTCACTTGA
65 TGAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACACCTCACTTGA
*
2388233 GGGACTG
130 GGGATTG
* * *
2388240 CCATTTCCAATTGAGAGTTTATAATGAGAATAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
1 ACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
2388305 GAGAAGAGCTTGTTCGACCTATCACTCGATTCACTGCAT-TTT-GAATCAGTGACACCTCACTTG
66 GAGAAGAGCTTGTTCGACCTATCACTCGATTCAC-G-ATATTTCGAATCAGTGACACCTCACTTG
2388368 AGGGATTG
129 AGGGATTG
2388376 ACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
1 ACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
* * *
2388441 GAGAAGAACTTGTTTGACCTATCACTCGATTCACGATATTTCGAATCATTGACACCTCACTTGAG
66 GAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACACCTCACTTGAG
2388506 GGATTG
131 GGATTG
2388512 ACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
1 ACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
2388577 GAGAAGA
66 GAGAAGA
2388584 ACTTATTCAA
Statistics
Matches: 438, Mismatches: 36, Indels: 12
0.90 0.07 0.02
Matches are distributed among these distances:
134 2 0.00
135 6 0.01
136 422 0.96
137 7 0.02
138 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (136 bp):
ACATTTCCAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAAT
GAGAAGAGCTTGTTCGACCTATCACTCGATTCACGATATTTCGAATCAGTGACACCTCACTTGAG
GGATTG
Found at i:2395203 original size:15 final size:15
Alignment explanation
Indices: 2395172--2395223 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
2395162 GTATAGTATT
2395172 TATTTATTTATTCATA
1 TATTTA-TTATTCATA
2395188 TATTTATTATT--TA
1 TATTTATTATTCATA
2395201 TATTT-TTATTCACTAA
1 TATTTATTATTCA-T-A
2395217 TATTTAT
1 TATTTAT
2395224 ATGAAATGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
12 5 0.16
13 7 0.23
15 6 0.19
16 12 0.39
17 1 0.03
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTTATTATTCATA
Found at i:2395208 original size:27 final size:29
Alignment explanation
Indices: 2395168--2395223 Score: 82
Period size: 27 Copynumber: 2.0 Consensus size: 29
2395158 ATTAGTATAG
2395168 TATTTATTTATTTATTCA-T-ATATTTAT
1 TATTTATTTATTTATTCACTAATATTTAT
2395195 TATTTATATT-TTTATTCACTAATATTTAT
1 TATTTAT-TTATTTATTCACTAATATTTAT
2395224 ATGAAATGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 15 0.58
28 3 0.12
29 8 0.31
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.64
Consensus pattern (29 bp):
TATTTATTTATTTATTCACTAATATTTAT
Found at i:2395568 original size:7 final size:7
Alignment explanation
Indices: 2395556--2395581 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
2395546 AATTAAATAT
2395556 ATTTTGA
1 ATTTTGA
2395563 ATTTTGA
1 ATTTTGA
2395570 ATTTTGA
1 ATTTTGA
2395577 ATTTT
1 ATTTT
2395582 TAATAATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.62
Consensus pattern (7 bp):
ATTTTGA
Found at i:2395994 original size:20 final size:21
Alignment explanation
Indices: 2395971--2396022 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
2395961 AGAAATTAAA
2395971 AATTCATTTATTT-AATTTTT
1 AATTCATTTATTTAAATTTTT
* *
2395991 AATTCTTTTCTTTCAAATTTTT
1 AATTCATTTATTT-AAATTTTT
2396013 -ATT-ATTTATT
1 AATTCATTTATT
2396023 ATTTTTATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 16 0.62
21 3 0.12
22 7 0.27
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (21 bp):
AATTCATTTATTTAAATTTTT
Found at i:2403423 original size:114 final size:113
Alignment explanation
Indices: 2403223--2403446 Score: 358
Period size: 114 Copynumber: 2.0 Consensus size: 113
2403213 TGCCAGGTGA
2403223 TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTCGAAGTGTTCTTTGAGTTATCTGATCTGA
1 TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTCGAAGTGTTCTTTGAGTTATCTGATCTGA
* * *
2403288 TTTAGTATAAACCCCAAAACCAATCATTGGATTTAAAAGATGAATTTGC
66 TTCAGTAGAAACCCCAAAACC-ATCATTGGAATTAAAAGATGAATTTGC
* *
2403337 TCATAGTAGAAATAAGGAGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGA
1 TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTCGAAGTGTTCTTTGAGTTATCTGATCTGA
* * * *
2403402 TTCGGTAGGAACCCCAGAACCATCATTGGAATTAAAGGATGAATT
66 TTCAGTAGAAACCCCAAAACCATCATTGGAATTAAAAGATGAATT
2403447 GCATGATCGT
Statistics
Matches: 101, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
113 22 0.22
114 79 0.78
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (113 bp):
TCATAGTAGAAATAAGAAGACTCAATAGCATCTTCTCGAAGTGTTCTTTGAGTTATCTGATCTGA
TTCAGTAGAAACCCCAAAACCATCATTGGAATTAAAAGATGAATTTGC
Found at i:2404746 original size:74 final size:74
Alignment explanation
Indices: 2404588--2404755 Score: 214
Period size: 74 Copynumber: 2.3 Consensus size: 74
2404578 AACAAGAAGC
* * *
2404588 AAATGTTGGGGCATGCTGAAAACCCTTTTCAATCAGAATCAGAAATGTTGAAATATTCTGAATAT
1 AAATGTTGGGGCATGCTGAAAACCCATTTCAATCAGAATCAGAAATGTTGAAACATTCTGAACAT
2404653 TTATCAGCA
66 TTATCAGCA
* * **
2404662 AAATGCTGGGGCATGCTGAAAACCCATTTCAATCAGAATCAGAACTGTTGATGCATT-TGAACAC
1 AAATGTTGGGGCATGCTGAAAACCCATTTCAATCAGAATCAGAAATGTTGAAACATTCTGAACA-
*
2404726 TTGTATTAGC-
65 TT-TATCAGCA
* *
2404736 CAATGTTGGGGCATGTTGAA
1 AAATGTTGGGGCATGCTGAA
2404756 GGCCCACAAC
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
73 5 0.06
74 70 0.86
75 6 0.07
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (74 bp):
AAATGTTGGGGCATGCTGAAAACCCATTTCAATCAGAATCAGAAATGTTGAAACATTCTGAACAT
TTATCAGCA
Found at i:2406670 original size:113 final size:112
Alignment explanation
Indices: 2406482--2407150 Score: 981
Period size: 112 Copynumber: 6.0 Consensus size: 112
2406472 TAGCAAAGAT
* * *
2406482 TCAAATCCATCATAT-GATGGATCAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTG
1 TCAAATCCATCAT-TCGATGGATCAGCATTTCCAG-AAGAGTTCATAATGAGAAGAACACATCTG
* * *
2406546 AAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACATTTTGC
64 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
* * *
2406595 TCAAATCCATCA-TCTGATGGATTAGCTTTTCCAGAAAAAGTTCATAATGAGAAGAACACATCTG
1 TCAAATCCATCATTC-GATGGATCAGCATTTCCAG-AAGAGTTCATAATGAGAAGAACACATCTG
* * *
2406659 AAGAAGGAAGAAGAAATTCATAATGAGAATAATTTGTTCAACCTTTTGC
64 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
*
2406708 TCAAATCCATCA-TCTGATGGATCAGCTTTTCCAGAAGAGTTCATAATGAGAAGAACACATCTGA
1 TCAAATCCATCATTC-GATGGATCAGCATTTCCAGAAGAGTTCATAATGAGAAGAACACATCTGA
2406772 AGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
65 AGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
** * *
2406820 TTGAATTCATCATTCGATGGATCAGCATTTCCAGAAGAGTTCATAATGAGAAGAACATATCTGAA
1 TCAAATCCATCATTCGATGGATCAGCATTTCCAGAAGAGTTCATAATGAGAAGAACACATCTGAA
2406885 GAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
66 GAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
** *
2406932 TTGAATTCATCATTCGATGGATCAGCATTTCCAGAAGAGTTCATAATGAGAAGAACACATCTGAA
1 TCAAATCCATCATTCGATGGATCAGCATTTCCAGAAGAGTTCATAATGAGAAGAACACATCTGAA
* *
2406997 GAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTTAACATTTTGC
66 GAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
** * * ** *
2407044 TTGAATTCATCATTCGATGGATCAGCATTGCCAGTTCGAGTTCATAATGAGAAGAACTCATCTGA
1 TCAAATCCATCATTCGATGGATCAGCATTTCCAG-AAGAGTTCATAATGAGAAGAACACATCTGA
2407109 AG-AGG-AGAAG-AGTTCATAATGAGAAGAACTTGTTCAACCTTT
65 AGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTT
2407151 GCATGACTCT
Statistics
Matches: 529, Mismatches: 23, Indels: 11
0.94 0.04 0.02
Matches are distributed among these distances:
110 30 0.06
111 6 0.01
112 323 0.61
113 170 0.32
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (112 bp):
TCAAATCCATCATTCGATGGATCAGCATTTCCAGAAGAGTTCATAATGAGAAGAACACATCTGAA
GAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
Found at i:2408474 original size:15 final size:15
Alignment explanation
Indices: 2408438--2408481 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
2408428 TTTAAATTAG
2408438 TATAGTATTTATTTATT
1 TATA-TATTTA-TTATT
*
2408455 CATATATTTATTATT
1 TATATATTTATTATT
*
2408470 TATATTTTTATT
1 TATATATTTATT
2408482 CACTAATATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 15 0.62
16 6 0.25
17 3 0.12
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (15 bp):
TATATATTTATTATT
Found at i:2410401 original size:336 final size:336
Alignment explanation
Indices: 2409370--2410744 Score: 1782
Period size: 336 Copynumber: 4.1 Consensus size: 336
2409360 ATGTCATCCC
* * * * * * ** *
2409370 CATTCTCCAGATGAGCCTTTGGATCATCAGTCTCCACCTCAACCTTTGGACTTTCATTCTCCACT
1 CATTCTCTAGCTGAACCTTAGGATCATCACTCTCCACCTCAAGCTTTGGACTCCCATTCTCCTCT
**** * * ** * * *
2409435 GGGGGCTTTCCATCTTGACACTCCATTTGGGTGTTAGAACTCACATTTTCTTCTTGTTTCGATCT
66 TCAAGCTTTCGATCTTGACTCTCCATTTGCATGTTAGAATTCACATTCTCTTCTTGTTTCGAGCT
* * *
2409500 CTGCAAATGTTTTCTGATCAGTGGCACCTCTG-CTACCCCGGCCGTATCATCCACCAACATGTCA
131 CTGCAAATGTTCTCCGATCAGTGGCACCTCTGTC-ACCGCGGCCGTATCATCCACCAACATGTCA
*
2409564 CTTTCTTCAATCACTCCATGACCAGATGCAGCCACACAATCACTAATATCATCTTTAAACTTCAA
195 CTCTCTTCAATCACTCCATGACCAGATGCAGCCACACAATCACTAATATCATCTTTAAACTTCAA
* * *
2409629 CTCACACTCCTCATTCTCACCACCACCATGATCCACTACATCTTTAACTTTCTTATGCATTTCAT
260 CCCACACTCCTCATTCTCACCACCACCATGATCCACTACATCTTCAACTTTCTTATGCATGTCAT
*
2409694 CCTCTTCATTCT
325 CCTCTTGATTCT
* * *
2409706 CATTCTCTAGTTGAACCTTAGGATCACCACTCTCCACTTCAAGCTTTGGACTCCCATTCTCCTCT
1 CATTCTCTAGCTGAACCTTAGGATCATCACTCTCCACCTCAAGCTTTGGACTCCCATTCTCCTCT
* * ** * * * * *
2409771 TCAATCTTACGATCACGACTCTCCGTTTTCATGTAAGGATCCACATTCTCTTCTTGTTTCGAGCT
66 TCAAGCTTTCGATCTTGACTCTCCATTTGCATGTTAGAATTCACATTCTCTTCTTGTTTCGAGCT
* * * * * * * *
2409836 CTGCAAATGTTCTCCGATCAGTGGTACGTCTGTTACTGAGGCCTTATCATCCA-CTA-ATAT-A-
131 CTGCAAATGTTCTCCGATCAGTGGCACCTCTGTCACCGCGGCCGTATCATCCACCAACATGTCAC
* * * *
2409897 TCACTTCAATCACTCCATGGCCAGATGCAGCCACACAATCACTAACATCATCTTTAAACTTCAGC
196 TCTCTTCAATCACTCCATGACCAGATGCAGCCACACAATCACTAATATCATCTTTAAACTTCAAC
*
2409962 CCACACCCCTTCTCATTCTCACCACCACCATGATCCACTACATCTTCAACTTTCTTATGCATGTC
261 CCACA---CTCCTCATTCTCACCACCACCATGATCCACTACATCTTCAACTTTCTTATGCATGTC
*
2410027 ATCCTCCTGATTCT
323 ATCCTCTTGATTCT
* * ** *
2410041 CATTCTCTAGCTGAACCTTAGGATCATCGCTCTCCTCCTCAAGCTTTGGACTCCCGCTCTCCACT
1 CATTCTCTAGCTGAACCTTAGGATCATCACTCTCCACCTCAAGCTTTGGACTCCCATTCTCCTCT
* ** * *
2410106 TCAAGATTTTTATCTTGACTCTCCGTTTGCATGTTTGAATTCACATTCTCTTCTTGTTTCGAGCT
66 TCAAGCTTTCGATCTTGACTCTCCATTTGCATGTTAGAATTCACATTCTCTTCTTGTTTCGAGCT
* * * *
2410171 CTGCAAATGTTCTCCCATCAATGGTACCTCTGTCACCGCGGCCTTATCATCCACCAACATGTCAC
131 CTGCAAATGTTCTCCGATCAGTGGCACCTCTGTCACCGCGGCCGTATCATCCACCAACATGTCAC
* * * *
2410236 TCTCTTCAATCACACCATGAGCAGATGCAACCACACAATCAGTAATATCATCTTTAAACTTCAAC
196 TCTCTTCAATCACTCCATGACCAGATGCAGCCACACAATCACTAATATCATCTTTAAACTTCAAC
* * *
2410301 TCACACTCCTCATTCTCACCACCTCCATAATCCACTACATCTTCAACTTTCTTATGCATGTCATC
261 CCACACTCCTCATTCTCACCACCACCATGATCCACTACATCTTCAACTTTCTTATGCATGTCATC
2410366 CTCTTGATTCT
326 CTCTTGATTCT
* * * * *
2410377 CATTCTCTAGCTGAGCCTTAGGATCATAACTCCCCGCCTCAAGCTTTGGACTTCCATTCTCCTCT
1 CATTCTCTAGCTGAACCTTAGGATCATCACTCTCCACCTCAAGCTTTGGACTCCCATTCTCCTCT
* * *
2410442 TCAAGCTTTCGAT-TTCGACTCCCCATTTGCATGTTGGAATTCACGTTCTCTTCTTGTTTCGAGC
66 TCAAGCTTTCGATCTT-GACTCTCCATTTGCATGTTAGAATTCACATTCTCTTCTTGTTTCGAGC
* * * *
2410506 TGTTCAAATGTTTTCCGATCAGTGGCACCTCTGTTACCGCGGCCGTATCATCCACCAACATGTCA
130 TCTGCAAATGTTCTCCGATCAGTGGCACCTCTGTCACCGCGGCCGTATCATCCACCAACATGTCA
*
2410571 CT-TCCTTCAATCACTCCATGACCAGATGCAGCCACACAATCAGTAATATCATCTTTAAACTTCA
195 CTCT-CTTCAATCACTCCATGACCAGATGCAGCCACACAATCACTAATATCATCTTTAAACTTCA
* * *
2410635 ACCCACACTCCTCATTCTCACAACCACCATCATCTC-CTACA---TCAAATTTCTTATGCATGTC
259 ACCCACACTCCTCATTCTCACCACCACCATGATC-CACTACATCTTCAACTTTCTTATGCATGTC
2410696 ATCCTCTTGATTCT
323 ATCCTCTTGATTCT
*
2410710 CATTCTCTAGCTGAGCCTTAGGATCATCACTCTCC
1 CATTCTCTAGCTGAACCTTAGGATCATCACTCTCC
2410745 GTTTGCATGT
Statistics
Matches: 900, Mismatches: 128, Indels: 25
0.85 0.12 0.02
Matches are distributed among these distances:
332 64 0.07
333 67 0.07
334 3 0.00
335 228 0.25
336 472 0.52
337 4 0.00
338 1 0.00
339 61 0.07
ACGTcount: A:0.23, C:0.33, G:0.11, T:0.33
Consensus pattern (336 bp):
CATTCTCTAGCTGAACCTTAGGATCATCACTCTCCACCTCAAGCTTTGGACTCCCATTCTCCTCT
TCAAGCTTTCGATCTTGACTCTCCATTTGCATGTTAGAATTCACATTCTCTTCTTGTTTCGAGCT
CTGCAAATGTTCTCCGATCAGTGGCACCTCTGTCACCGCGGCCGTATCATCCACCAACATGTCAC
TCTCTTCAATCACTCCATGACCAGATGCAGCCACACAATCACTAATATCATCTTTAAACTTCAAC
CCACACTCCTCATTCTCACCACCACCATGATCCACTACATCTTCAACTTTCTTATGCATGTCATC
CTCTTGATTCT
Found at i:2413358 original size:22 final size:24
Alignment explanation
Indices: 2413333--2413383 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
2413323 AAACTGGTAA
2413333 TTTAGAAAA-ATAT-ATTATATT-T
1 TTTAGAAAATATATAATT-TATTAT
2413355 TTTAAGAAAATATATAATTTATTAT
1 TTT-AGAAAATATATAATTTATTAT
2413380 TTTA
1 TTTA
2413384 AGGGTAAACT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
22 3 0.12
23 6 0.24
24 9 0.36
25 7 0.28
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (24 bp):
TTTAGAAAATATATAATTTATTAT
Found at i:2413377 original size:24 final size:24
Alignment explanation
Indices: 2413336--2413385 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
2413326 CTGGTAATTT
2413336 AGAAAAATATATTATATT-TTTTA
1 AGAAAAATATATTATATTATTTTA
2413359 AGAAAATATATAATT-TATTATTTTA
1 AGAAAA-ATAT-ATTATATTATTTTA
2413384 AG
1 AG
2413386 GGTAAACTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 6 0.25
24 8 0.33
25 10 0.42
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (24 bp):
AGAAAAATATATTATATTATTTTA
Found at i:2431220 original size:27 final size:27
Alignment explanation
Indices: 2431190--2431339 Score: 121
Period size: 26 Copynumber: 5.7 Consensus size: 27
2431180 ATTCGGTTAA
*
2431190 TAATTTTCAAATAAATTTCGGTTCGAT
1 TAATGTTCAAATAAATTTCGGTTCGAT
*
2431217 TAATGGTCAAAT-AATTTCGGTTCGAT
1 TAATGTTCAAATAAATTTCGGTTCGAT
* * ** *
2431243 TAATGGTTAAAGAAAAAAATCGGTT--AA
1 TAAT-GTTCAA-ATAAATTTCGGTTCGAT
* *
2431270 TAATTTTCAAATAAATTTAGGTTCGAT
1 TAATGTTCAAATAAATTTCGGTTCGAT
* * * *
2431297 TAACGGTCAAAT-AATTTCGATTTGAT
1 TAATGTTCAAATAAATTTCGGTTCGAT
*
2431323 TAATGTT-AAAGAAATTT
1 TAATGTTCAAATAAATTT
2431340 TTTTGATTAA
Statistics
Matches: 93, Mismatches: 24, Indels: 13
0.72 0.18 0.10
Matches are distributed among these distances:
25 12 0.13
26 43 0.46
27 29 0.31
28 1 0.01
29 8 0.09
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.39
Consensus pattern (27 bp):
TAATGTTCAAATAAATTTCGGTTCGAT
Found at i:2431238 original size:94 final size:92
Alignment explanation
Indices: 2431130--2431393 Score: 259
Period size: 94 Copynumber: 2.9 Consensus size: 92
2431120 TTATTTGTTT
2431130 AAATAAATTTCGGTTCGATTAATGGTTAAAGAAATTTTTTGGTTAATTCGATTCGGTTAATAATT
1 AAAT-AATTTCGGTTCGATTAATGGTTAAAGAAATTTTTT-GTTAATT-GATTCGGTTAATAATT
*
2431195 TTCAAATAAATTTCGGTTCGATTAATGGTC
63 TTCAAATAAATTTCGGTTCGATTAACGGTC
*** ** * *
2431225 AAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAATCGGTTAA-TAATT---TTCA-AA---T
1 AAATAATTTCGGTTCGATTAATGGTTAAAG-AAATTTTTTGTTAATTGATTCGGTTAATAATTTT
*
2431282 -AAAT---TTA-GGTTCGATTAACGGTC
65 CAAATAAATTTCGGTTCGATTAACGGTC
* * *
2431305 AAATAATTTCGATTTGATTAAT-GTTAAAGAAATTTTTTTGATTAATTTGGTTCGGTTAATAATT
1 AAATAATTTCGGTTCGATTAATGGTTAAAGAAA-TTTTTTG-TTAA-TTGATTCGGTTAATAATT
2431369 TTCAAATAAATTTCGGTTCGATTAA
63 TTCAAATAAATTTCGGTTCGATTAA
2431394 AGGTTAAAGA
Statistics
Matches: 132, Mismatches: 20, Indels: 35
0.71 0.11 0.19
Matches are distributed among these distances:
78 3 0.02
79 9 0.07
80 39 0.30
81 2 0.02
82 3 0.02
84 4 0.03
85 4 0.03
86 2 0.02
88 2 0.02
89 4 0.03
90 4 0.03
92 3 0.02
93 3 0.02
94 42 0.32
95 8 0.06
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.41
Consensus pattern (92 bp):
AAATAATTTCGGTTCGATTAATGGTTAAAGAAATTTTTTGTTAATTGATTCGGTTAATAATTTTC
AAATAAATTTCGGTTCGATTAACGGTC
Found at i:2431315 original size:80 final size:79
Alignment explanation
Indices: 2431182--2431336 Score: 265
Period size: 80 Copynumber: 1.9 Consensus size: 79
2431172 TTAATTCGAT
* * *
2431182 TCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAATGGTCAAATAATTTCGGTTCGATTAAT
1 TCGGTTAATAATTTTCAAATAAATTTAGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAAT
2431247 GGTTAAAGAAAAAAA
66 -GTTAAAGAAAAAAA
*
2431262 TCGGTTAATAATTTTCAAATAAATTTAGGTTCGATTAACGGTCAAATAATTTCGATTTGATTAAT
1 TCGGTTAATAATTTTCAAATAAATTTAGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAAT
2431327 GTTAAAGAAA
66 GTTAAAGAAA
2431337 TTTTTTTGAT
Statistics
Matches: 71, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
79 10 0.14
80 61 0.86
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.37
Consensus pattern (79 bp):
TCGGTTAATAATTTTCAAATAAATTTAGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAAT
GTTAAAGAAAAAAA
Found at i:2431392 original size:68 final size:67
Alignment explanation
Indices: 2431303--2431545 Score: 246
Period size: 69 Copynumber: 3.6 Consensus size: 67
2431293 CGATTAACGG
* * * **
2431303 TCAAAT-AATTTCGATTTGATTAATGTTAAAGAAATTTTTTTGATTAATTTGGTTCGGTTAATAA
1 TCAAATAAATTTCGGTTCGATTAATGTTAAAGAAAATAATTTGATTAATTT-GTTCGGTTAATAA
2431367 TTT
65 TTT
* *
2431370 TCAAATAAATTTCGGTTCGATTAAAGGTTAAAGAAAAATAATTT-A-T--TTTATTCGGTTAATA
1 TCAAATAAATTTCGGTTCGATT-AATGTTAAAG-AAAATAATTTGATTAATTTGTTCGGTTAATA
2431431 ATTT
64 ATTT
* * * * * *
2431435 CCAAATAAA-TTCGGTTCGATTAATGGTTAAAGAAAAAAATTCGGTTAATTCAGTTTGGTTAATA
1 TCAAATAAATTTCGGTTCGATTAAT-GTTAAAGAAAATAATTTGATTAATT-TGTTCGGTTAATA
2431499 ATTT
64 ATTT
* * *
2431503 TCAAATAAATTTCGGTTCAATTAACGGTTAAAAAAAATAATTT
1 TCAAATAAATTTCGGTTCGATTAA-TGTTAAAGAAAATAATTT
2431546 ATTTTAACAA
Statistics
Matches: 144, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
63 10 0.07
64 19 0.13
65 24 0.17
66 3 0.02
67 8 0.06
68 36 0.25
69 37 0.26
70 7 0.05
ACGTcount: A:0.39, C:0.07, G:0.13, T:0.41
Consensus pattern (67 bp):
TCAAATAAATTTCGGTTCGATTAATGTTAAAGAAAATAATTTGATTAATTTGTTCGGTTAATAAT
TT
Found at i:2431469 original size:64 final size:66
Alignment explanation
Indices: 2431354--2431551 Score: 269
Period size: 65 Copynumber: 3.0 Consensus size: 66
2431344 GATTAATTTG
2431354 GTTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAAAGGTTAAAGAAAAATAATTTATTTT
1 GTTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAAAGGTTAAAGAAAAATAATTTATTTT
2431419 A
66 A
* *
2431420 -TTCGGTTAATAATTTCCAAATAAA-TTCGGTTCGATTAATGGTTAAAGAAAAA-AATTCGGTTA
1 GTTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAAAGGTTAAAGAAAAATAA-T---TTA
* *
2431482 ATTCA
62 TTTTA
* * *
2431487 GTTTGGTTAATAATTTTCAAATAAATTTCGGTTCAATTAACGGTTAAA-AAAAATAATTTATTTT
1 GTTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAAAGGTTAAAGAAAAATAATTTATTTT
2431551 A
66 A
2431552 ACAAATAATT
Statistics
Matches: 115, Mismatches: 10, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
63 2 0.02
64 28 0.24
65 29 0.25
67 6 0.05
68 28 0.24
69 22 0.19
ACGTcount: A:0.39, C:0.08, G:0.13, T:0.40
Consensus pattern (66 bp):
GTTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAAAGGTTAAAGAAAAATAATTTATTTT
A
Found at i:2431526 original size:69 final size:66
Alignment explanation
Indices: 2431355--2431545 Score: 255
Period size: 64 Copynumber: 2.9 Consensus size: 66
2431345 ATTAATTTGG
* *
2431355 TTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAAAGGTTAAAGAAAAATAA-TTTATTTT
1 TTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAAAGGTTAAAGAAAAATAATTTTAATTC
2431419 A
66 A
* *
2431420 TTCGGTTAATAATTTCCAAATAAA-TTCGGTTCGATTAATGGTTAAAGAAAAA-AATTCGGTTAA
1 TTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAAAGGTTAAAGAAAAATAATT---TTAA
2431483 TTCA
63 TTCA
* * *
2431487 GTTTGGTTAATAATTTTCAAATAAATTTCGGTTCAATTAACGGTTAAA-AAAAATAATTT
1 -TTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAAAGGTTAAAGAAAAATAATTT
2431546 ATTTTAACAA
Statistics
Matches: 111, Mismatches: 8, Indels: 13
0.84 0.06 0.10
Matches are distributed among these distances:
63 2 0.02
64 28 0.25
65 23 0.21
66 1 0.01
67 6 0.05
68 27 0.24
69 24 0.22
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.39
Consensus pattern (66 bp):
TTCGGTTAATAATTTTCAAATAAATTTCGGTTCGATTAAAGGTTAAAGAAAAATAATTTTAATTC
A
Found at i:2457971 original size:42 final size:42
Alignment explanation
Indices: 2457916--2457995 Score: 135
Period size: 42 Copynumber: 1.9 Consensus size: 42
2457906 ATGAATTTTC
*
2457916 TTCTTCTCGAATTTGTTATGTCCACAAAAC-TGAACTCTATTT
1 TTCTTCTCAAATTTGTTATGTCCACAAAACAT-AACTCTATTT
2457958 TTCTTCTCAAATTTGTTATGTCCACAAAACATAACTCT
1 TTCTTCTCAAATTTGTTATGTCCACAAAACATAACTCT
2457996 TTTCTGCTAC
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
42 35 0.97
43 1 0.03
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.41
Consensus pattern (42 bp):
TTCTTCTCAAATTTGTTATGTCCACAAAACATAACTCTATTT
Found at i:2458012 original size:42 final size:42
Alignment explanation
Indices: 2457925--2458019 Score: 115
Period size: 42 Copynumber: 2.3 Consensus size: 42
2457915 CTTCTTCTCG
* *
2457925 AATTTGTTATGTCCACAAAACTGAACTCTATTTTTCTTCTCA
1 AATTTGTTATGTCCACAAAACTGAACTCTATTTTGCTACTCA
2457967 AATTTGTTATGTCCACAAAACAT-AACTCT-TTTCTGCTAC-CAA
1 AATTTGTTATGTCCACAAAAC-TGAACTCTATTT-TGCTACTC-A
*
2458009 AATTCGTTATG
1 AATTTGTTATG
2458020 CCTACGGTCA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
41 4 0.09
42 42 0.89
43 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (42 bp):
AATTTGTTATGTCCACAAAACTGAACTCTATTTTGCTACTCA
Found at i:2458381 original size:14 final size:15
Alignment explanation
Indices: 2458348--2458385 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
2458338 AATTTTACAT
2458348 GGAAAATCCTTTCGG
1 GGAAAATCCTTTCGG
*
2458363 GGAAAATCCTTTTGG
1 GGAAAATCCTTTCGG
*
2458378 GAAAAATC
1 GGAAAATC
2458386 ACGGGCAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (15 bp):
GGAAAATCCTTTCGG
Found at i:2462713 original size:18 final size:20
Alignment explanation
Indices: 2462690--2462733 Score: 65
Period size: 18 Copynumber: 2.3 Consensus size: 20
2462680 GTGGCGGTTT
*
2462690 TAAAAATATTTTTTAT-GG-
1 TAAAAATATTTTATATAGGA
2462708 TAAAAATATTTTATATAGGA
1 TAAAAATATTTTATATAGGA
2462728 TAAAAA
1 TAAAAA
2462734 CAAATAAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 15 0.65
19 2 0.09
20 6 0.26
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (20 bp):
TAAAAATATTTTATATAGGA
Found at i:2465997 original size:23 final size:23
Alignment explanation
Indices: 2465971--2466029 Score: 109
Period size: 23 Copynumber: 2.6 Consensus size: 23
2465961 TGTACATGAA
2465971 CGTTAAATGAACATGTTCGTAAT
1 CGTTAAATGAACATGTTCGTAAT
2465994 CGTTAAATGAACATGTTCGTAAT
1 CGTTAAATGAACATGTTCGTAAT
*
2466017 CGCTAAATGAACA
1 CGTTAAATGAACA
2466030 AACACGAGCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (23 bp):
CGTTAAATGAACATGTTCGTAAT
Found at i:2467319 original size:12 final size:12
Alignment explanation
Indices: 2467302--2467326 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2467292 ACAAAGCACC
2467302 ATTTGGTGCCTA
1 ATTTGGTGCCTA
2467314 ATTTGGTGCCTA
1 ATTTGGTGCCTA
2467326 A
1 A
2467327 ATTATTTGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (12 bp):
ATTTGGTGCCTA
Found at i:2469690 original size:30 final size:30
Alignment explanation
Indices: 2469627--2469749 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
2469617 GAAGGACCTA
* * * *
2469627 TCCAGAGGTCACAAAGA-CCCCGATAACTA
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
2469656 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
2469686 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
2469716 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
2469746 TCCA
1 TCCA
2469750 TATGTTCCTT
Statistics
Matches: 89, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
29 16 0.18
30 73 0.82
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (30 bp):
TCCAGAGGTCATAAAGATCCTCGGTAACTG
Found at i:2469780 original size:31 final size:30
Alignment explanation
Indices: 2469738--2469835 Score: 117
Period size: 31 Copynumber: 3.2 Consensus size: 30
2469728 AAAGATCCTC
*
2469738 GGTAACTGTCCATATGTTCCTTAGAACATA
1 GGTAACTGTCCATATGTTCCATAGAACATA
* *
2469768 GGTATACTGTCCATATGTCTCGAAAG-ACATA
1 GGTA-ACTGTCCATATGT-TCCATAGAACATA
*
2469799 GGTAAAACTGTCCATATGTTCCGTAGAACATA
1 GGT--AACTGTCCATATGTTCCATAGAACATA
2469831 GGTAA
1 GGTAA
2469836 ACCCTCGACT
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
30 6 0.11
31 25 0.44
32 25 0.44
33 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (30 bp):
GGTAACTGTCCATATGTTCCATAGAACATA
Found at i:2470531 original size:21 final size:21
Alignment explanation
Indices: 2470501--2470545 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
2470491 ATTCTGTCGT
* *
2470501 TTGAAGGGGTATCGGTTCCCC
1 TTGAAGGGGTACCGATTCCCC
*
2470522 TTGAATGGGTACCGATTCCCC
1 TTGAAGGGGTACCGATTCCCC
2470543 TTG
1 TTG
2470546 CCCAGAAATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (21 bp):
TTGAAGGGGTACCGATTCCCC
Found at i:2475003 original size:30 final size:30
Alignment explanation
Indices: 2474947--2475069 Score: 212
Period size: 30 Copynumber: 4.1 Consensus size: 30
2474937 GAAGGACCTA
* * *
2474947 TCCAGAGGTCACAAAGA-CCCCGGTAACTA
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
2474976 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
2475006 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
2475036 TCCAGAGGTCATAAAGATCCTCGGTAACTG
1 TCCAGAGGTCATAAAGATCCTCGGTAACTG
2475066 TCCA
1 TCCA
2475070 TATGTTCCTT
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
29 16 0.18
30 74 0.82
ACGTcount: A:0.31, C:0.26, G:0.22, T:0.21
Consensus pattern (30 bp):
TCCAGAGGTCATAAAGATCCTCGGTAACTG
Found at i:2475100 original size:31 final size:30
Alignment explanation
Indices: 2475058--2475155 Score: 117
Period size: 31 Copynumber: 3.2 Consensus size: 30
2475048 AAAGATCCTC
*
2475058 GGTAACTGTCCATATGTTCCTTAGAACATA
1 GGTAACTGTCCATATGTTCCATAGAACATA
* *
2475088 GGTATACTGTCCATATGTCTCGAAAG-ACATA
1 GGTA-ACTGTCCATATGT-TCCATAGAACATA
*
2475119 GGTAAAACTGTCCATATGTTCCGTAGAACATA
1 GGT--AACTGTCCATATGTTCCATAGAACATA
2475151 GGTAA
1 GGTAA
2475156 ACCCTCGACT
Statistics
Matches: 57, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
30 6 0.11
31 25 0.44
32 25 0.44
33 1 0.02
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (30 bp):
GGTAACTGTCCATATGTTCCATAGAACATA
Found at i:2480111 original size:25 final size:27
Alignment explanation
Indices: 2480083--2480138 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 27
2480073 GAAAATATAT
2480083 TTTCGTCTT-CC-TAAAATTTTATAAG
1 TTTCGTCTTCCCTTAAAATTTTATAAG
2480108 TTTCGTCTTCCCCTTAAAATTTTATAAG
1 TTTCGTCTT-CCCTTAAAATTTTATAAG
2480136 TTT
1 TTT
2480139 GCTCCTTATC
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
25 9 0.32
27 2 0.07
28 17 0.61
ACGTcount: A:0.25, C:0.18, G:0.07, T:0.50
Consensus pattern (27 bp):
TTTCGTCTTCCCTTAAAATTTTATAAG
Found at i:2489088 original size:16 final size:16
Alignment explanation
Indices: 2489067--2489122 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
2489057 GAATTTAATT
2489067 TAAATTAATTAATCAA
1 TAAATTAATTAATCAA
*
2489083 TAAATTAAATATAATTAA
1 TAAATT-AAT-TAATCAA
* *
2489101 TTAATTATAATAA-CAA
1 TAAATTA-ATTAATCAA
2489117 TAAATT
1 TAAATT
2489123 CTCGGAAAGG
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 13 0.41
17 7 0.22
18 12 0.38
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (16 bp):
TAAATTAATTAATCAA
Found at i:2489879 original size:18 final size:18
Alignment explanation
Indices: 2489851--2489896 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
2489841 AACGGGTTAC
2489851 ATAAA-AAAATA-ATGAAA
1 ATAAATAAAATAGA-GAAA
2489868 ATAAATAAAATAGAGAAA
1 ATAAATAAAATAGAGAAA
2489886 ATAAAATAAAA
1 AT-AAATAAAA
2489897 AAACGAATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.19
18 12 0.46
19 9 0.35
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (18 bp):
ATAAATAAAATAGAGAAA
Found at i:2489945 original size:14 final size:13
Alignment explanation
Indices: 2489926--2489964 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
2489916 ATAAAAAGAT
2489926 AAAGTAAAGATAAA
1 AAAGTAAA-ATAAA
2489940 AAAGT-AAATAAA
1 AAAGTAAAATAAA
2489952 ATAAGTAAAATAA
1 A-AAGTAAAATAA
2489965 CGATAATGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 6 0.26
13 6 0.26
14 11 0.48
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (13 bp):
AAAGTAAAATAAA
Found at i:2489947 original size:19 final size:18
Alignment explanation
Indices: 2489866--2489955 Score: 60
Period size: 20 Copynumber: 4.6 Consensus size: 18
2489856 AAAATAATGA
2489866 AAAT-AAATAAAATAGAGA-
1 AAATAAAATAAAA-A-AGAT
2489884 AAATAAAATAAAAAAACGAAT
1 AAATAAAAT-AAAAAA-G-AT
*
2489905 GAAATAAAGAAATAAAAAGAT
1 -AAATAAA-ATA-AAAAAGAT
2489926 AAAGTAAAGATAAAAAAG-T
1 AAA-TAAA-ATAAAAAAGAT
2489945 AAATAAAATAA
1 AAATAAAATAA
2489956 GTAAAATAAC
Statistics
Matches: 61, Mismatches: 2, Indels: 19
0.74 0.02 0.23
Matches are distributed among these distances:
17 4 0.07
18 9 0.15
19 10 0.16
20 14 0.23
21 9 0.15
22 9 0.15
23 6 0.10
ACGTcount: A:0.73, C:0.01, G:0.10, T:0.16
Consensus pattern (18 bp):
AAATAAAATAAAAAAGAT
Found at i:2489947 original size:27 final size:26
Alignment explanation
Indices: 2489851--2489997 Score: 75
Period size: 27 Copynumber: 5.3 Consensus size: 26
2489841 AACGGGTTAC
* *
2489851 ATAAAAAAAT-AATGAAAATAAATAAA
1 ATAAAGAAATAAAT-AAAATAAGTAAA
* * *
2489877 ATAGAGAAAATAAAATAAAAAAACGAATGAA
1 ATAAAG-AAAT-AAATAAAATAA-G--TAAA
*
2489908 ATAAAGAAATAAA-AAGATAAAGTAAA
1 ATAAAGAAATAAATAAAAT-AAGTAAA
2489934 GATAAA-AAAGTAAATAAAATAAGTAAA
1 -ATAAAGAAA-TAAATAAAATAAGTAAA
* * *
2489961 ATAACGATAATGAGAATAAAAGAAATAAA
1 ATAAAGA-AAT-A-AATAAAATAAGTAAA
2489990 AGTAAAGA
1 A-TAAAGA
2489998 TAAAGGAAAA
Statistics
Matches: 92, Mismatches: 14, Indels: 26
0.70 0.11 0.20
Matches are distributed among these distances:
26 14 0.15
27 22 0.24
28 17 0.18
29 22 0.24
30 9 0.10
31 8 0.09
ACGTcount: A:0.71, C:0.01, G:0.12, T:0.16
Consensus pattern (26 bp):
ATAAAGAAATAAATAAAATAAGTAAA
Found at i:2489954 original size:44 final size:44
Alignment explanation
Indices: 2489870--2489955 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
2489860 TAATGAAAAT
* *
2489870 AAATAAAATAGAGAAAATAAAATAAAAAAACGAATGAAATAAAG
1 AAATAAAATAGAGAAAATAAAATAAAAAAACAAATAAAATAAAG
* * **
2489914 AAATAAAA-AGATAAAGTAAAGATAAAAAAGTAAATAAAATAA
1 AAATAAAATAGAGAAAATAAA-ATAAAAAAACAAATAAAATAA
2489956 GTAAAATAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
43 10 0.29
44 25 0.71
ACGTcount: A:0.73, C:0.01, G:0.10, T:0.15
Consensus pattern (44 bp):
AAATAAAATAGAGAAAATAAAATAAAAAAACAAATAAAATAAAG
Found at i:2490030 original size:68 final size:67
Alignment explanation
Indices: 2489902--2490032 Score: 164
Period size: 68 Copynumber: 1.9 Consensus size: 67
2489892 TAAAAAAACG
*
2489902 AATGAAATAAAGAAATAAAAAGATAAAGTAAAGATAAAAAAGTAAATAAAATAAGTAAAATAACG
1 AATGAAATAAAGAAATAAAAAGATAAAGTAAAGATAAAAAAGTAAATAAAAAAAGTAAAATAACG
2489967 AT
66 AT
2489969 AATGAGAATAAAAGAAAT-AAAAG-TAAAGATAAAGGA-AAAATAA-TAAATAAAACAAAG-AAA
1 AATGA-AAT-AAAGAAATAAAAAGATAAAG-TAAA-GATAAAA-AAGTAAATAAAA-AAAGTAAA
2490029 ATAA
60 ATAA
2490033 TAATAATACA
Statistics
Matches: 57, Mismatches: 1, Indels: 11
0.83 0.01 0.16
Matches are distributed among these distances:
67 10 0.18
68 32 0.56
69 15 0.26
ACGTcount: A:0.70, C:0.02, G:0.12, T:0.16
Consensus pattern (67 bp):
AATGAAATAAAGAAATAAAAAGATAAAGTAAAGATAAAAAAGTAAATAAAAAAAGTAAAATAACG
AT
Found at i:2490031 original size:21 final size:20
Alignment explanation
Indices: 2490004--2490089 Score: 68
Period size: 21 Copynumber: 4.1 Consensus size: 20
2489994 AAGATAAAGG
2490004 AAAAATAATAAATAAAACAA
1 AAAAATAATAAATAAAACAA
*
2490024 AGAAAATAAT-AATAATACACA
1 A-AAAATAATAAATAAAACA-A
* *
2490045 TACAATAAATAAATAAATACAA
1 AAAAAT-AATAAATAAA-ACAA
*
2490067 CCAAAAATAA-AAATAAAATAA
1 --AAAAATAATAAATAAAACAA
2490088 AA
1 AA
2490090 TAGAAAATAG
Statistics
Matches: 52, Mismatches: 7, Indels: 15
0.70 0.09 0.20
Matches are distributed among these distances:
19 2 0.04
20 13 0.25
21 15 0.29
22 13 0.25
23 5 0.10
24 4 0.08
ACGTcount: A:0.73, C:0.08, G:0.01, T:0.17
Consensus pattern (20 bp):
AAAAATAATAAATAAAACAA
Found at i:2490096 original size:17 final size:16
Alignment explanation
Indices: 2490069--2490107 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
2490059 AAATACAACC
2490069 AAAAATAAAAATA-AA
1 AAAAATAAAAATAGAA
2490084 ATAAAATAGAAAATAGAA
1 A-AAAATA-AAAATAGAA
2490102 AAAAAT
1 AAAAAT
2490108 GATAGTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 1 0.05
16 6 0.29
17 11 0.52
18 3 0.14
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (16 bp):
AAAAATAAAAATAGAA
Found at i:2490157 original size:15 final size:15
Alignment explanation
Indices: 2490139--2490176 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
2490129 TGAAAATAAT
2490139 AATAATAAA-AACAGA
1 AATAATAAAGAA-AGA
*
2490154 AATAAGAAAGAAAGA
1 AATAATAAAGAAAGA
2490169 AATAATAA
1 AATAATAA
2490177 TAAGAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 18 0.90
16 2 0.10
ACGTcount: A:0.74, C:0.03, G:0.11, T:0.13
Consensus pattern (15 bp):
AATAATAAAGAAAGA
Found at i:2492254 original size:85 final size:85
Alignment explanation
Indices: 2492067--2492396 Score: 439
Period size: 85 Copynumber: 3.9 Consensus size: 85
2492057 CAACTTAAGT
* * * * * *
2492067 TATGTTGTGAATTTGACATGCCCTTGAGCTGAATGTAATCGAACTCGAAGGT-TTTGCTGATAGA
1 TATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGA
* *
2492131 TAATCCTTCTCGCCTTGAGT
66 TAACCCTTCTCGCCTTGAGC
* * * *
2492151 TATGCTGTAAATTGGATATGCCTTTGAGTTGAATGTAATCGAACTTGAAGGTCTTGGTTGACAGA
1 TATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGA
*
2492216 TAGCCCTTCTCGCCTTGAGC
66 TAACCCTTCTCGCCTTGAGC
* *
2492236 TATGTTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTTGTTAACAG
1 TATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTC-TTTGTTGACAG
*
2492301 ATAACCATTCTCGCCTTGAGC
65 ATAACCCTTCTCGCCTTGAGC
* * * * * *
2492322 TATGCTGTAAATTTGATGTGCC-TTGAGCTGAGTGCAATCGAACTTGAAGGTATTTGATGACAGA
1 TATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGA
2492386 TAACCCTTCTC
66 TAACCCTTCTC
2492397 TGAAGTTGAA
Statistics
Matches: 214, Mismatches: 30, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
84 65 0.30
85 101 0.47
86 48 0.22
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (85 bp):
TATGCTGTAAATTTGATATGCCTTTGAGCTGAATGTAATCGAACTCGAAGGTCTTTGTTGACAGA
TAACCCTTCTCGCCTTGAGC
Found at i:2492979 original size:143 final size:145
Alignment explanation
Indices: 2492535--2492987 Score: 636
Period size: 142 Copynumber: 3.2 Consensus size: 145
2492525 ATCGTGAATG
* *
2492535 GCTCATTCGTTGTGAAGTTGAGCTTTAAATTGGATATCATTCGTTTGTG-AGTTAAAATCCAATC
1 GCTCATTCGCTGTGAAGTTGAGCTTTGAATTGGATATCATTCG-TTGTGAAGTTAAAATCCAATC
* * *
2492599 TTGCGTTG-TTCGAGTCCAATATCATTCGCTGTGAATTTGAAATTGACTCTGAATGAAACTGGAA
65 -TGTGTTGTTTCGAGTCCAATATCATTCGCCGTGAAGTTGAAATTGACTCTGAATGAAACTGGAA
*
2492663 A-TTGTTTATTGTCAGAC
129 AGTTG-TTATTGACAGAC
* * *
2492680 GCTCCTTCGCTGTGAAGTTGAGCTTTGAATTGGATTTCATTAG-T-TGAAGTTAAAATCCAATCT
1 GCTCATTCGCTGTGAAGTTGAGCTTTGAATTGGATATCATTCGTTGTGAAGTTAAAATCCAATCT
*
2492743 -TGTTGTTTCGACTCCAATATCATTCGCCGTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAG
66 GTGTTGTTTCGAGTCCAATATCATTCGCCGTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAG
*
2492807 TAT-TTGTTGACAGAC
131 T-TGTTATTGACAGAC
* * * *
2492822 GCTCCTTCACTGTGAAGTTGAGCTTTGAATTGCATATCATTCGTTGTGAAGTTGAAATCCAATCT
1 GCTCATTCGCTGTGAAGTTGAGCTTTGAATTGGATATCATTCGTTGTGAAGTTAAAATCCAATCT
* *
2492887 GTGTTGTTTCGAGT-CAATATCCTTCACCGTGAAGTTG-AATTGACTCTGAATGAAACTGGAAAG
66 GTGTTGTTTCGAGTCCAATATCATTCGCCGTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAG
2492950 TTGTTATTGACAGAC
131 TTGTTATTGACAGAC
* *
2492965 ACTCATTCGTTGTGAAGTTGAGC
1 GCTCATTCGCTGTGAAGTTGAGC
2492988 AACCACCATC
Statistics
Matches: 276, Mismatches: 24, Indels: 18
0.87 0.08 0.06
Matches are distributed among these distances:
141 4 0.01
142 107 0.39
143 75 0.27
144 40 0.14
145 50 0.18
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (145 bp):
GCTCATTCGCTGTGAAGTTGAGCTTTGAATTGGATATCATTCGTTGTGAAGTTAAAATCCAATCT
GTGTTGTTTCGAGTCCAATATCATTCGCCGTGAAGTTGAAATTGACTCTGAATGAAACTGGAAAG
TTGTTATTGACAGAC
Found at i:2495581 original size:64 final size:63
Alignment explanation
Indices: 2495513--2495632 Score: 154
Period size: 64 Copynumber: 1.9 Consensus size: 63
2495503 GCACATGTAG
** *
2495513 TGCATCGATGCA-CTCTTTTAA-AATAAAAACATCGAATGCAATTAGTGCATCGATGCATAAGGC
1 TGCATCGATGCATC-CCATTAATAATAAAAA-ATCGAATGCAATTA-TGCACCGATGCATAAGGC
2495576 A
63 A
**
2495577 TGCATCGATGCATCCCATTAATAATAAAAAATCGAATGCTTTTATGCACCGATGCA
1 TGCATCGATGCATCCCATTAATAATAAAAAATCGAATGCAATTATGCACCGATGCA
2495633 AGTAGTGCAT
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
63 11 0.22
64 29 0.59
65 9 0.18
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.28
Consensus pattern (63 bp):
TGCATCGATGCATCCCATTAATAATAAAAAATCGAATGCAATTATGCACCGATGCATAAGGCA
Found at i:2501723 original size:2 final size:2
Alignment explanation
Indices: 2501716--2501745 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
2501706 TTCTACTGGC
2501716 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2501746 TGCAAAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:2502734 original size:2 final size:2
Alignment explanation
Indices: 2502727--2502883 Score: 235
Period size: 2 Copynumber: 79.0 Consensus size: 2
2502717 GATGTAAAAC
2502727 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2502769 TA TA TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
2502810 TA TG TA TA TA TA TA TG TA TA TG TA TA TA TA TA TG TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
2502852 TA TG TA TA TA TA CA TA TA TA TC TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2502884 CTCTAGTTAG
Statistics
Matches: 138, Mismatches: 16, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
1 1 0.01
2 137 0.99
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (2 bp):
TA
Found at i:2504385 original size:2 final size:2
Alignment explanation
Indices: 2504373--2504416 Score: 70
Period size: 2 Copynumber: 21.5 Consensus size: 2
2504363 TGTTTATGTT
*
2504373 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TCA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
2504416 T
1 T
2504417 TATCGTATTA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:2507176 original size:64 final size:64
Alignment explanation
Indices: 2507106--2507230 Score: 189
Period size: 64 Copynumber: 2.0 Consensus size: 64
2507096 ATACACATGC
*
2507106 AGTGCATCGATGCATTAAT-TTAAAAAGAAAACATCGAATAGGATTTATGCATCGATGCATAAGG
1 AGTGCATCGATGCATCAATATTAAAAA-AAAACATCGAATAGGATTTATGCATCGATGCATAAGG
** * *
2507170 AGTGCATCGATGCATCCCTATTAAATACAAACATCGAATAGGATTTATGCATCGATGCATA
1 AGTGCATCGATGCATCAATATTAAAAAAAAACATCGAATAGGATTTATGCATCGATGCATA
2507231 CCTCCATTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 49 0.89
65 6 0.11
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.27
Consensus pattern (64 bp):
AGTGCATCGATGCATCAATATTAAAAAAAAACATCGAATAGGATTTATGCATCGATGCATAAGG
Found at i:2507869 original size:103 final size:103
Alignment explanation
Indices: 2507690--2507907 Score: 391
Period size: 103 Copynumber: 2.1 Consensus size: 103
2507680 GTAGAGGGTC
* *
2507690 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAATATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGAAACATGTGTGAGGTCTGGTGAGACACATAC
*
2507755 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTATTAAGGAATGA
*
2507793 TATGTGGTCCTTCGGGATATATATGTATTCTTTGAAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGAAACATGTGTGAGGTCTGGTGAGACACATAC
2507858 TTGATCCTTGGCATATGTATATGATTATTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTATTAAGGAATGA
*
2507896 TATATGGTCCTT
1 TATGTGGTCCTT
2507908 ATGGACATTA
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
103 110 1.00
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGAAACATGTGTGAGGTCTGGTGAGACACATAC
TTGATCCTTGGCATATGTATATGATTATTAAGGAATGA
Found at i:2507957 original size:23 final size:23
Alignment explanation
Indices: 2507924--2507986 Score: 85
Period size: 23 Copynumber: 2.7 Consensus size: 23
2507914 ATTATTATAT
2507924 GGCACTACGGTGCAATTCTAC-G
1 GGCACTACGGTGCAATTCTACAG
*
2507946 CGGCACTCCGGTGCAATTCTACAG
1 -GGCACTACGGTGCAATTCTACAG
2507970 GGCACTTA-GGTGCAATT
1 GGCAC-TACGGTGCAATT
2507987 ATATGAGCTG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
23 34 0.94
24 2 0.06
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACAG
Found at i:2513703 original size:64 final size:64
Alignment explanation
Indices: 2513618--2513758 Score: 194
Period size: 64 Copynumber: 2.2 Consensus size: 64
2513608 TTGTTTAAGG
* * *
2513618 TGCATCGATGCACATGCAGTGCATCGATGCATTAAT-TTAAAAAGAAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGCAGTGCATCGATGCATCAATATTAAAAA-AAAACATCGAATAGGATTTA
* ** * *
2513682 TGCATCGATGCATAAGGAGTGCATCGATGCATCCCTATTAAATACAAACATCGAATAGGATTTA
1 TGCATCGATGCATAAGCAGTGCATCGATGCATCAATATTAAAAAAAAACATCGAATAGGATTTA
2513746 TGCATCGATGCAT
1 TGCATCGATGCAT
2513759 GGTGTAGTGC
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
64 62 0.91
65 6 0.09
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (64 bp):
TGCATCGATGCATAAGCAGTGCATCGATGCATCAATATTAAAAAAAAACATCGAATAGGATTTA
Found at i:2514428 original size:105 final size:103
Alignment explanation
Indices: 2514241--2514460 Score: 386
Period size: 105 Copynumber: 2.1 Consensus size: 103
2514231 GTAGAGGGTC
* *
2514241 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACGCATAC
1 TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
2514306 TTGATCCTTGGCATATGTATATATGATTATTAAGGAATGA
66 TTGATCCTTGGCATATG--TATATGATTATTAAGGAATGA
*
2514346 TATGCGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
*
2514411 TTGATCCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGCATATGTATATGATTATTAAGGAATGA
2514449 TATGTGGTCCTT
1 TATGTGGTCCTT
2514461 ATGGACATTA
Statistics
Matches: 110, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
103 31 0.28
105 79 0.72
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (103 bp):
TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
TTGATCCTTGGCATATGTATATGATTATTAAGGAATGA
Found at i:2514510 original size:23 final size:23
Alignment explanation
Indices: 2514477--2514539 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 23
2514467 ATTATTATAT
*
2514477 GGCACTACGGTGTAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
2514500 GGCACTCCGGTGCAATTCTACGG
1 GGCACTACGGTGCAATTCTACGC
2514523 GGCACTTA-GGTGCAATT
1 GGCAC-TACGGTGCAATT
2514540 ATATGAGCTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 34 0.97
24 1 0.03
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:2515164 original size:23 final size:23
Alignment explanation
Indices: 2515134--2515180 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
2515124 AATCTTTGCC
2515134 TTAAACACCCCACACTTACTCCG
1 TTAAACACCCCACACTTACTCCG
2515157 TTAAACACCCCACACTTACTCCG
1 TTAAACACCCCACACTTACTCCG
2515180 T
1 T
2515181 GTCAGCATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.43, G:0.04, T:0.23
Consensus pattern (23 bp):
TTAAACACCCCACACTTACTCCG
Found at i:2517976 original size:19 final size:19
Alignment explanation
Indices: 2517943--2517986 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
2517933 AGCACATCTG
2517943 TAACTAACTTCAAAAC-AACC
1 TAAC-AACTTCAAAACTAA-C
*
2517963 TAACAACTTGAAAACTAAC
1 TAACAACTTCAAAACTAAC
2517982 TAACA
1 TAACA
2517987 GTCTTTGCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.52, C:0.25, G:0.02, T:0.20
Consensus pattern (19 bp):
TAACAACTTCAAAACTAAC
Found at i:2523564 original size:33 final size:33
Alignment explanation
Indices: 2523522--2523610 Score: 142
Period size: 33 Copynumber: 2.7 Consensus size: 33
2523512 AATTTACTAT
* * * *
2523522 AATTGAAATACTTAAATACTTTCAAGTTTGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
2523555 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
1 AATTCAAATACTTAAAAACTTCCAAGTTCGATA
2523588 AATTCAAATACTTAAAAACTTCC
1 AATTCAAATACTTAAAAACTTCC
2523611 CTAACGACTA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.45, C:0.16, G:0.06, T:0.34
Consensus pattern (33 bp):
AATTCAAATACTTAAAAACTTCCAAGTTCGATA
Found at i:2525851 original size:19 final size:19
Alignment explanation
Indices: 2525827--2525865 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
2525817 GATACATGCT
2525827 ATGCCTATTCCAAGTTGCC
1 ATGCCTATTCCAAGTTGCC
2525846 ATGCCTATTCCAAGTTGCC
1 ATGCCTATTCCAAGTTGCC
2525865 A
1 A
2525866 AAGCCTTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (19 bp):
ATGCCTATTCCAAGTTGCC
Found at i:2525875 original size:19 final size:19
Alignment explanation
Indices: 2525829--2525877 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
2525819 TACATGCTAT
*
2525829 GCCTATTCCAAGTTGCCAT
1 GCCTATTCCAAGTTGCCAA
2525848 GCCTATTCCAAGTTGCCAAA
1 GCCTATTCCAAGTTGCC-AA
2525868 GCCT-TTCCAA
1 GCCTATTCCAA
2525878 CTCATTCTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 23 0.82
20 5 0.18
ACGTcount: A:0.24, C:0.33, G:0.14, T:0.29
Consensus pattern (19 bp):
GCCTATTCCAAGTTGCCAA
Found at i:2531898 original size:7 final size:7
Alignment explanation
Indices: 2531886--2531910 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2531876 GAAATGAATG
2531886 TAAAGAA
1 TAAAGAA
2531893 TAAAGAA
1 TAAAGAA
2531900 TAAAGAA
1 TAAAGAA
2531907 TAAA
1 TAAA
2531911 TAATGAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (7 bp):
TAAAGAA
Found at i:2541861 original size:3 final size:3
Alignment explanation
Indices: 2541853--2541886 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
2541843 ATATTAATTA
2541853 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
2541887 TTTATAATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:2548213 original size:64 final size:62
Alignment explanation
Indices: 2548116--2548256 Score: 151
Period size: 64 Copynumber: 2.2 Consensus size: 62
2548106 CACATTGAAT
* * * *
2548116 GTGCATCGATGCACTCTTTAAAGAAGAAACATCGAA-TGCAATTGATGCATTGATGCATAAGGA
1 GTGCATCGATGCACCCCTTAAAGAAAAAACATCGAAGTG-AATTG-TGCATCGATGCATAAGGA
* * * *
2548179 GTGCATCGATGCATCCCCTTAAA-ATAAAAACATCGAAGGTGATTTGTGTATCGATGCATGAGTA
1 GTGCATCGATGCA-CCCCTTAAAGA-AAAAACATCGAA-GTGAATTGTGCATCGATGCATAAGGA
2548243 GTGCATCGATGCAC
1 GTGCATCGATGCAC
2548257 ATGTTAAAGA
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
63 15 0.23
64 45 0.68
65 4 0.06
66 2 0.03
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (62 bp):
GTGCATCGATGCACCCCTTAAAGAAAAAACATCGAAGTGAATTGTGCATCGATGCATAAGGA
Found at i:2548944 original size:23 final size:20
Alignment explanation
Indices: 2548893--2548947 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 20
2548883 AGGGTTCATA
2548893 GGTCATTCGGGACATACAGT
1 GGTCATTCGGGACATACAGT
* *
2548913 GGTCCTTCGGGACATTTTATAGT
1 GGTCATTCGGGACA---TACAGT
2548936 GGTCATTCGGGA
1 GGTCATTCGGGA
2548948 TAAATTCATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 13 0.45
23 16 0.55
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.31
Consensus pattern (20 bp):
GGTCATTCGGGACATACAGT
Found at i:2552286 original size:64 final size:63
Alignment explanation
Indices: 2552192--2552332 Score: 160
Period size: 64 Copynumber: 2.2 Consensus size: 63
2552182 CATATTCAAT
* * * *
2552192 GTGCATCGATACACTCTTTAAAGAAGAAACATCGAATGCAATTGGTGCATCGATGCATAAGG-A
1 GTGCATCGATGCACCCTTTAAAGAAAAAACATCGAAGGCAATTGGTGCATCGATGCAT-AGGTA
** * * *
2552255 GTGCATCGATGCATCCCTTTAAA-ATAAAAACATCGAAGGTGATTTGTGTATCGATGCATGGGTA
1 GTGCATCGATGCA-CCCTTTAAAGA-AAAAACATCGAAGGCAATTGGTGCATCGATGCATAGGTA
2552319 GTGCATCGATGCAC
1 GTGCATCGATGCAC
2552333 ATGTTAAAGA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
63 16 0.24
64 50 0.76
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (63 bp):
GTGCATCGATGCACCCTTTAAAGAAAAAACATCGAAGGCAATTGGTGCATCGATGCATAGGTA
Found at i:2553017 original size:23 final size:24
Alignment explanation
Indices: 2552986--2553034 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
2552976 CGGGATATAC
*
2552986 AGTGGTCATTCAGGAC-ATTTCAT
1 AGTGGTCATTCAGGACAAATTCAT
* *
2553009 AGTGTTCATTCGGGACAAATTCAT
1 AGTGGTCATTCAGGACAAATTCAT
2553033 AG
1 AG
2553035 CCCCTAGTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (24 bp):
AGTGGTCATTCAGGACAAATTCAT
Found at i:2560224 original size:21 final size:20
Alignment explanation
Indices: 2560138--2560295 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
2560128 AAATGACCAA
**
2560138 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
2560157 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
2560177 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
2560197 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
2560218 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
2560239 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
2560259 CCAAAATCGCAACGCGAATAT
1 -CAAAATCGCAACGCGATTTT
*
2560280 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
2560296 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 41 0.39
21 47 0.45
ACGTcount: A:0.39, C:0.25, G:0.17, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:2560324 original size:20 final size:20
Alignment explanation
Indices: 2560262--2560415 Score: 159
Period size: 20 Copynumber: 7.7 Consensus size: 20
2560252 CGATTTTCCA
* ** *
2560262 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGTATCCGT
* *
2560282 AAATCGCAACGCG-AACACAT
1 AAATCGCAACGCGTATC-CGT
2560302 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
*
2560322 AAATCGCAACGTGTATCCGT
1 AAATCGCAACGCGTATCCGT
* *
2560342 TAATCACAACGCGTATCCGT
1 AAATCGCAACGCGTATCCGT
* * *
2560362 AAATCGCAACG-ATAATACAT
1 AAATCGCAACGCGT-ATCCGT
2560382 AAAATCGCAACGCGTATCCGT
1 -AAATCGCAACGCGTATCCGT
2560403 AAATCGCAACGCG
1 AAATCGCAACGCG
2560416 ATATTTAAAG
Statistics
Matches: 110, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
19 2 0.02
20 90 0.82
21 17 0.15
22 1 0.01
ACGTcount: A:0.38, C:0.27, G:0.18, T:0.18
Consensus pattern (20 bp):
AAATCGCAACGCGTATCCGT
Found at i:2560837 original size:33 final size:33
Alignment explanation
Indices: 2560798--2560868 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 33
2560788 TTCACTTAGA
* *
2560798 TTTCATTTCGCGTTACGATTCTGTCGTTATGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTACGAT
* * *
2560831 TTTCATTTCGCGTTGCTATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTACGAT
2560864 TTTCA
1 TTTCA
2560869 AGTTAGTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.13, C:0.21, G:0.17, T:0.49
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTACGAT
Found at i:2560992 original size:20 final size:20
Alignment explanation
Indices: 2560948--2561057 Score: 108
Period size: 21 Copynumber: 5.8 Consensus size: 20
2560938 TGCAGAAGAG
*
2560948 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGA-GAATGAAAA
***
2560969 TCGCAACGAGAGAATGACTG
1 TCGCAACGAGAGAATGAAAA
2560989 TCGCAACGAGAGAAATGAAAA
1 TCGCAACGAGAG-AATGAAAA
2561010 TCGCAAC--GAG-A-G--AA
1 TCGCAACGAGAGAATGAAAA
*
2561024 TCGCAACGCGA-AATGAAAA
1 TCGCAACGAGAGAATGAAAA
2561043 TCGCAACGAGAGAAT
1 TCGCAACGAGAGAAT
2561058 CGCAACGCGA
Statistics
Matches: 73, Mismatches: 8, Indels: 17
0.74 0.08 0.17
Matches are distributed among these distances:
14 9 0.12
16 4 0.05
17 2 0.03
19 15 0.21
20 20 0.27
21 23 0.32
ACGTcount: A:0.45, C:0.18, G:0.25, T:0.12
Consensus pattern (20 bp):
TCGCAACGAGAGAATGAAAA
Found at i:2561005 original size:41 final size:38
Alignment explanation
Indices: 2560941--2561057 Score: 145
Period size: 41 Copynumber: 3.1 Consensus size: 38
2560931 TTCAATTTGC
* *
2560941 AGAAGAGTCGCAACGAGATAAATGAAAATCGCAACGAG
1 AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
2560979 AGAATGACTGTCGCAACGAGAGAAATGAAAATCGCAACGAG
1 AGAAT-A--GTCGCAACGAGAGAAATGAAAATCGCAACGAG
*
2561020 AG-A-A-TCGCAAC--GCGAAATGAAAATCGCAACGAG
1 AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
2561053 AGAAT
1 AGAAT
2561058 CGCAACGCGA
Statistics
Matches: 71, Mismatches: 3, Indels: 13
0.82 0.03 0.15
Matches are distributed among these distances:
33 23 0.32
34 1 0.01
35 7 0.10
38 5 0.07
39 1 0.01
40 1 0.01
41 33 0.46
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (38 bp):
AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
Found at i:2561027 original size:14 final size:14
Alignment explanation
Indices: 2561008--2561064 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
2560998 GAGAAATGAA
2561008 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
2561022 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
2561041 AATCGCAACGAGAG
1 AATCGCAACGAGAG
2561055 AATCGCAACG
1 AATCGCAACG
2561065 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:2561040 original size:33 final size:33
Alignment explanation
Indices: 2561000--2561069 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
2560990 CGCAACGAGA
2561000 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
2561033 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
2561066 GAAA
1 GAAA
2561070 CCAAATCGCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.47, C:0.20, G:0.24, T:0.09
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:2561102 original size:19 final size:18
Alignment explanation
Indices: 2561075--2561177 Score: 87
Period size: 19 Copynumber: 6.1 Consensus size: 18
2561065 CGAAACCAAA
*
2561075 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCA-T
2561094 TCGCGTTGCGA--TTC--
1 TCGCGTTGCGATTTTCAT
*
2561108 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCA-T
* *
2561127 TCGCATTGCGATTGTCAT
1 TCGCGTTGCGATTTTCAT
2561145 TCGCGTTGCGA--TTC--
1 TCGCGTTGCGATTTTCAT
*
2561159 TCTCGTTGCGATTTTCAT
1 TCGCGTTGCGATTTTCAT
2561177 T
1 T
2561178 TCAACCAAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
14 20 0.30
16 8 0.12
17 3 0.04
18 12 0.18
19 24 0.36
ACGTcount: A:0.12, C:0.23, G:0.20, T:0.45
Consensus pattern (18 bp):
TCGCGTTGCGATTTTCAT
Found at i:2561116 original size:14 final size:15
Alignment explanation
Indices: 2561097--2561171 Score: 55
Period size: 14 Copynumber: 4.7 Consensus size: 15
2561087 TTTCATTTCG
2561097 CGTTGCGATTC-TCT
1 CGTTGCGATTCATCT
*
2561111 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTCATCT
*
2561128 CGCATTGCGATTGTCATTCG
1 CG--TTGCGA-T-TCA-TCT
2561148 CGTTGCGATTC-TCT
1 CGTTGCGATTCATCT
2561162 CGTTGCGATT
1 CGTTGCGATT
2561172 TTCATTTCAA
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
14 20 0.40
16 5 0.10
17 5 0.10
18 8 0.16
19 9 0.18
20 3 0.06
ACGTcount: A:0.11, C:0.24, G:0.23, T:0.43
Consensus pattern (15 bp):
CGTTGCGATTCATCT
Found at i:2561161 original size:51 final size:52
Alignment explanation
Indices: 2561075--2561179 Score: 194
Period size: 51 Copynumber: 2.0 Consensus size: 52
2561065 CGAAACCAAA
*
2561075 TCGCATTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTGTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
2561127 TCGCATTGCGATTGTCA-TTCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTGTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
2561178 TC
1 TC
2561180 AACCAAAAGA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 36 0.69
52 16 0.31
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.45
Consensus pattern (52 bp):
TCGCATTGCGATTGTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATT
Found at i:2563033 original size:93 final size:93
Alignment explanation
Indices: 2562874--2563249 Score: 727
Period size: 93 Copynumber: 4.1 Consensus size: 93
2562864 TAGATTGCTT
*
2562874 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
2562939 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
2562967 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
2563032 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
2563060 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
2563125 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
2563153 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
*
2563218 TTTGTCTTTGTTTTGTCTATTGGTTG-A
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
2563245 AGTAA
1 AGTAA
2563250 TGCAATCCAT
Statistics
Matches: 281, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
92 6 0.02
93 275 0.98
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:2563337 original size:19 final size:19
Alignment explanation
Indices: 2563297--2563425 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
2563287 TAGTTTACTT
* *
2563297 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
2563317 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
2563336 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
2563355 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
2563369 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
2563388 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
2563402 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
2563421 TCGCA
1 TCGCA
2563426 TTGCGATTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 19 0.21
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 46 0.51
20 13 0.14
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:2563376 original size:33 final size:32
Alignment explanation
Indices: 2563333--2563425 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 32
2563323 CGCGAAACCA
**
2563333 AAATCGCAACGCGAAATGAAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
2563365 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
2563398 AAGATCGCAACGCGAAACCAAAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
2563426 TTGCGATTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
32 2 0.04
33 55 0.96
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:2563423 original size:52 final size:52
Alignment explanation
Indices: 2563297--2563425 Score: 140
Period size: 52 Copynumber: 2.5 Consensus size: 52
2563287 TAGTTTACTT
**
2563297 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
1 TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
* * *
2563349 T-G-AAAATCGCAACGACAGAATCGCAACGCGAAACCAAAATCGCAACGAC-AAGA
1 TCGCAACA-CGAAAC-ACAAAATCGCAACGCGAAACCAAAATCGCAACG-CGAA-A
*
2563402 TCGCAACGCGAAAC-CAAAATCGCA
1 TCGCAACACGAAACACAAAATCGCA
2563426 TTGCGATTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
50 3 0.05
51 6 0.10
52 42 0.68
53 3 0.05
54 6 0.10
55 2 0.03
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.09
Consensus pattern (52 bp):
TCGCAACACGAAACACAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
Found at i:2563443 original size:19 final size:19
Alignment explanation
Indices: 2563421--2563555 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
2563411 GAAACCAAAA
*
2563421 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
2563440 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
2563456 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
2563473 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
2563489 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
2563506 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
2563525 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
2563545 TCGTGTTGCGA
1 TCGCGTTGCGA
2563556 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 10, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 15 0.16
16 11 0.12
17 11 0.12
19 46 0.48
20 12 0.13
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:2563462 original size:14 final size:14
Alignment explanation
Indices: 2563443--2563499 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
2563433 TTTCATTTCG
2563443 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
2563457 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
2563474 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
2563490 CGTTGCGATT
1 CGTTGCGATT
2563500 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:2563468 original size:33 final size:33
Alignment explanation
Indices: 2563426--2563518 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
2563416 CAAAATCGCA
*
2563426 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
2563459 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
2563492 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
2563519 TTGGTTTCGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:2565496 original size:14 final size:14
Alignment explanation
Indices: 2565477--2565526 Score: 91
Period size: 14 Copynumber: 3.6 Consensus size: 14
2565467 ATTGTTTAAT
2565477 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
2565491 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
2565505 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
2565519 TGATTTGT
1 TGATTTGT
2565527 GTAATTGATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.36, C:0.00, G:0.22, T:0.42
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:2565657 original size:19 final size:19
Alignment explanation
Indices: 2565633--2565730 Score: 134
Period size: 19 Copynumber: 5.4 Consensus size: 19
2565623 AAAATTGACT
2565633 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
2565652 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
* *
2565671 ATTGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
2565685 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
2565704 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
2565724 ATCGCAA
1 ATCGCAA
2565731 CGGGAGAATC
Statistics
Matches: 69, Mismatches: 4, Indels: 11
0.82 0.05 0.13
Matches are distributed among these distances:
14 9 0.13
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 38 0.55
20 16 0.23
ACGTcount: A:0.46, C:0.16, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:2565762 original size:53 final size:53
Alignment explanation
Indices: 2565633--2565749 Score: 209
Period size: 53 Copynumber: 2.2 Consensus size: 53
2565623 AAAATTGACT
*
2565633 ATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATTGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
*
2565685 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGGGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
2565738 ATCGCAATGCGA
1 ATCGCAATGCGA
2565750 TTTTAATTTC
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 29 0.47
53 33 0.53
ACGTcount: A:0.44, C:0.17, G:0.25, T:0.15
Consensus pattern (53 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
Found at i:2565767 original size:19 final size:19
Alignment explanation
Indices: 2565739--2565958 Score: 214
Period size: 19 Copynumber: 12.7 Consensus size: 19
2565729 AACGGGAGAA
* *
2565739 TCGCAATGCGATTTTAATT
1 TCGCATTGCGATTTTCATT
*
2565758 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
2565774 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
2565791 TCGCATTGCGATTTTCA-T
1 TCGCATTGCGATTTTCATT
2565809 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
2565828 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
2565844 TCG--TTGCGA-TTTCATT
1 TCGCATTGCGATTTTCATT
*
2565860 TCGCATTGGGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
2565879 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
2565895 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
2565912 TCCGCATTGCGATTTTCA--
1 T-CGCATTGCGATTTTCATT
*
2565930 T-G--TTGGGATTTTCATT
1 TCGCATTGCGATTTTCATT
2565946 TCGCATTGCGATT
1 TCGCATTGCGATT
2565959 CTCTCGTTGC
Statistics
Matches: 167, Mismatches: 12, Indels: 44
0.75 0.05 0.20
Matches are distributed among these distances:
14 29 0.17
15 3 0.02
16 24 0.14
17 15 0.09
18 26 0.16
19 58 0.35
20 12 0.07
ACGTcount: A:0.15, C:0.21, G:0.19, T:0.45
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:2565819 original size:70 final size:70
Alignment explanation
Indices: 2565739--2565891 Score: 263
Period size: 70 Copynumber: 2.2 Consensus size: 70
2565729 AACGGGAGAA
*
2565739 TCGCAATGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATT
1 TCGCATTGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGA-TTTCATTTCGCATTGCGATT
2565804 TTCA-T
65 TTCATT
* *
2565809 TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTCATTTCGCATTGGGATTT
1 TCGCATTGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTCATTTCGCATTGCGATTT
2565874 TCATT
66 TCATT
2565879 TCGCATTGCGATT
1 TCGCATTGCGATT
2565892 CTCTCGTTGC
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
69 23 0.29
70 56 0.71
ACGTcount: A:0.16, C:0.22, G:0.18, T:0.44
Consensus pattern (70 bp):
TCGCATTGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTCATTTCGCATTGCGATTT
TCATT
Found at i:2565821 original size:51 final size:52
Alignment explanation
Indices: 2565739--2565930 Score: 214
Period size: 51 Copynumber: 3.7 Consensus size: 52
2565729 AACGGGAGAA
* * * *
2565739 TCGCAATGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCG-ATTTTC-ATT-
1 TCGCATTGCGATTTTCATTTCGCATTGCGATT-T-TCATTGCGCA-TTGCGATTC
*
2565791 TCGCATTGCGATTTTCA-TTCGCATTGCGATTTTCATTTCGCATTGCGATTC
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTGCGCATTGCGATTC
* * * *
2565842 TCTCGTTGCGA-TTTCATTTCGCATTGGGATTTTCATTTCGCATTGCGATTC
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTGCGCATTGCGATTC
* *
2565893 TCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCAT
1 TCGCATTGCGATTTTCATTT-CGCATTGCGATTTTCAT
2565931 GTTGGGATTT
Statistics
Matches: 125, Mismatches: 9, Indels: 11
0.86 0.06 0.08
Matches are distributed among these distances:
49 9 0.07
50 10 0.08
51 67 0.54
52 23 0.18
53 16 0.13
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (52 bp):
TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTGCGCATTGCGATTC
Found at i:2565980 original size:33 final size:33
Alignment explanation
Indices: 2565869--2565972 Score: 165
Period size: 33 Copynumber: 3.1 Consensus size: 33
2565859 TTCGCATTGG
2565869 GATTTTCATTTCGCATTGCGATTCTCTCGTTGC
1 GATTTTCATTTCGCATTGCGATTCTCTCGTTGC
* *
2565902 GATTTTCATTTCCGCATTGCGATTTTCAT-GTTGG
1 GATTTTCATTT-CGCATTGCGATTCTC-TCGTTGC
2565936 GATTTTCATTTCGCATTGCGATTCTCTCGTTGC
1 GATTTTCATTTCGCATTGCGATTCTCTCGTTGC
2565969 GATT
1 GATT
2565973 GTAATTTCCA
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
32 1 0.02
33 33 0.52
34 29 0.45
35 1 0.02
ACGTcount: A:0.13, C:0.21, G:0.19, T:0.46
Consensus pattern (33 bp):
GATTTTCATTTCGCATTGCGATTCTCTCGTTGC
Found at i:2565989 original size:67 final size:67
Alignment explanation
Indices: 2565865--2565991 Score: 209
Period size: 67 Copynumber: 1.9 Consensus size: 67
2565855 TCATTTCGCA
* * *
2565865 TTGGGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCCGCATTGCGATTTTCA
1 TTGGGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTGTAATTTCCACATTGCGATTTTCA
2565930 TG
66 TG
**
2565932 TTGGGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTGTAATTTCCATGTTGCGAT
1 TTGGGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTGTAATTTCCACATTGCGAT
2565992 AGTCAAATGC
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
67 55 1.00
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.46
Consensus pattern (67 bp):
TTGGGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTGTAATTTCCACATTGCGATTTTCA
TG
Found at i:2567616 original size:24 final size:24
Alignment explanation
Indices: 2567582--2567628 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
2567572 CTGAAACATC
2567582 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
2567606 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
2567629 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:2568338 original size:20 final size:20
Alignment explanation
Indices: 2568310--2568580 Score: 292
Period size: 20 Copynumber: 13.5 Consensus size: 20
2568300 AAATTTCAGT
* *
2568310 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
*
2568330 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
*
2568350 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
*
2568370 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
*
2568390 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCTC
*
2568410 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCTC
* *
2568430 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
* * *
2568450 GTTGCGATTTTATGTATTATC
1 GTTGCGA-TTTACGGATTCTC
* *
2568471 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
* * *
2568491 GTTGCGATTAACGGATACAC
1 GTTGCGATTTACGGATTCTC
* *
2568511 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCTC
* *
2568531 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCTC
* ** *
2568551 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCTC
2568571 GTTGCGATTT
1 GTTGCGATTT
2568581 TGGAAAATCG
Statistics
Matches: 214, Mismatches: 34, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
20 198 0.93
21 16 0.07
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.39
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCTC
Found at i:2568370 original size:40 final size:40
Alignment explanation
Indices: 2568310--2568580 Score: 330
Period size: 40 Copynumber: 6.8 Consensus size: 40
2568300 AAATTTCAGT
* *
2568310 GTTGTGATTTACAGATTCTCGTTGCGATTTACGGATTATC
1 GTTGCGATTTACAGATTCGCGTTGCGATTTACGGATTATC
*
2568350 GTTGCGATTTACAGATTCTCGTTGCGATTTACGGATTATC
1 GTTGCGATTTACAGATTCGCGTTGCGATTTACGGATTATC
*
2568390 GTTGCGATTTACAGATTCTCGTTGCGATTTACGGATTATC
1 GTTGCGATTTACAGATTCGCGTTGCGATTTACGGATTATC
* * * *
2568430 GTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATC
1 GTTGCGATTTACAGATTCGCGTTGCGA-TTTACGGATTATC
* * * *
2568471 GTTGCGATTTACGGATACGCGTTGCGATTAACGGA-TACAC
1 GTTGCGATTTACAGATTCGCGTTGCGATTTACGGATTA-TC
* * * **
2568511 GTTGCGATTTACGGATACGCGTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACAGATTCGCGTTGCGATTTACG-GATTATC
* *
2568551 GTTGCGATTTTCATATTCGCGTTGCGATTT
1 GTTGCGATTTACAGATTCGCGTTGCGATTT
2568581 TGGAAAATCG
Statistics
Matches: 209, Mismatches: 18, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
39 2 0.01
40 167 0.80
41 40 0.19
ACGTcount: A:0.19, C:0.17, G:0.25, T:0.39
Consensus pattern (40 bp):
GTTGCGATTTACAGATTCGCGTTGCGATTTACGGATTATC
Found at i:2568597 original size:21 final size:21
Alignment explanation
Indices: 2568567--2568649 Score: 87
Period size: 21 Copynumber: 4.0 Consensus size: 21
2568557 ATTTTCATAT
*
2568567 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
2568588 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
2568609 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
2568630 TCGCATTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
2568650 CTGATTTGCG
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
20 1 0.02
21 45 0.94
22 2 0.04
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:2572438 original size:19 final size:19
Alignment explanation
Indices: 2572392--2572438 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
2572382 TGAAATTTCT
*
2572392 TAAAAATAATTAGTATTAAA
1 TAAAATTAA-TAGTATTAAA
*
2572412 TATAATTAATAGTA-TAAA
1 TAAAATTAATAGTATTAAA
2572430 TAAATATTA
1 TAAA-ATTA
2572439 TGATTTTTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 7 0.30
19 9 0.39
20 7 0.30
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (19 bp):
TAAAATTAATAGTATTAAA
Found at i:2574158 original size:22 final size:22
Alignment explanation
Indices: 2574110--2574158 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
2574100 TTTTTGAAAA
* *
2574110 AATAAATAAATTAATAAGTGAT
1 AATAAATAAAGTAATAAATGAT
*
2574132 AATAAATAAAGTAGTAAAT-AT
1 AATAAATAAAGTAATAAATGAT
2574153 ATATAA
1 A-ATAA
2574159 TGACTTTTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (22 bp):
AATAAATAAAGTAATAAATGAT
Found at i:2584176 original size:31 final size:31
Alignment explanation
Indices: 2584141--2584205 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
2584131 GTCCCGAATG
* *
2584141 ACCTGTCC-ATATGCCTCGAATGACATAGGTA
1 ACCTG-CCAATATGCCTCAAAGGACATAGGTA
*
2584172 ACCTGCCAATATGTCTCAAAGGACATAGGTA
1 ACCTGCCAATATGCCTCAAAGGACATAGGTA
2584203 ACC
1 ACC
2584206 CTCGACTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
30 2 0.07
31 28 0.93
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.23
Consensus pattern (31 bp):
ACCTGCCAATATGCCTCAAAGGACATAGGTA
Found at i:2585341 original size:17 final size:17
Alignment explanation
Indices: 2585319--2585352 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
2585309 AACATGTTCT
2585319 AAATTCGTTTCTAACAC
1 AAATTCGTTTCTAACAC
2585336 AAATTCGTTTCTAACAC
1 AAATTCGTTTCTAACAC
2585353 TTTGAATTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.24, G:0.06, T:0.35
Consensus pattern (17 bp):
AAATTCGTTTCTAACAC
Found at i:2587365 original size:131 final size:131
Alignment explanation
Indices: 2587131--2587383 Score: 409
Period size: 131 Copynumber: 1.9 Consensus size: 131
2587121 TCAAGGACCC
*
2587131 AATCCCTAGCTGTATCATTAAGAAATTGGAAAACAAAAAGATTATCACCAAATATTCTTCACTTC
1 AATCCCTAGCTGTATCATGAAGAAATTGGAAAACAAAAAGATTATCACCAAATATTCTTCACTTC
2587196 AACCTCCCCCATCTTCCCCCAAAGGGCATTCACAAGCTTCTACAACGAACCAAAATTCGAGAACC
66 AACCTCCCCCATCTTCCCCCAAAGGGCATTCACAAGCTTCTACAACGAACCAAAATTCGAGAACC
2587261 T
131 T
* * * ** *
2587262 AATCCCTAGTTGTATCATGAAGAAATTGGAAAACAAAGAGATTATCACTAGCTATT-TTCTCTTC
1 AATCCCTAGCTGTATCATGAAGAAATTGGAAAACAAAAAGATTATCACCAAATATTCTTCACTTC
* *
2587326 AACCTCCCCCATCTTCCCCCCAAAGGGCATTCACAAGCTTCTGCAATGAACCAAAATT
66 AACCTCCCCCATCTT-CCCCCAAAGGGCATTCACAAGCTTCTACAACGAACCAAAATT
2587384 TGGGGAGCGA
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
130 22 0.20
131 90 0.80
ACGTcount: A:0.36, C:0.28, G:0.11, T:0.25
Consensus pattern (131 bp):
AATCCCTAGCTGTATCATGAAGAAATTGGAAAACAAAAAGATTATCACCAAATATTCTTCACTTC
AACCTCCCCCATCTTCCCCCAAAGGGCATTCACAAGCTTCTACAACGAACCAAAATTCGAGAACC
T
Found at i:2587767 original size:22 final size:22
Alignment explanation
Indices: 2587723--2587768 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
2587713 TATATTTTTA
* *
2587723 TTAAAATTTTATTTTTTATCTC
1 TTAAAATTTTATATTTCATCTC
2587745 TTAAAATTTTATAATTTCACTCTC
1 TTAAAATTTTAT-ATTTCA-TCTC
2587769 GTAGCATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
23 4 0.20
24 4 0.20
ACGTcount: A:0.30, C:0.13, G:0.00, T:0.57
Consensus pattern (22 bp):
TTAAAATTTTATATTTCATCTC
Found at i:2589305 original size:17 final size:17
Alignment explanation
Indices: 2589285--2589323 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
2589275 ATTTAATAAA
2589285 ATTTTAAAT-TATTGTAT
1 ATTTTAAATAT-TTGTAT
*
2589302 ATTTTAAATATTTTTAT
1 ATTTTAAATATTTGTAT
2589319 ATTTT
1 ATTTT
2589324 TTGTTGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (17 bp):
ATTTTAAATATTTGTAT
Found at i:2594256 original size:75 final size:75
Alignment explanation
Indices: 2594130--2594315 Score: 248
Period size: 75 Copynumber: 2.5 Consensus size: 75
2594120 GTCGAGTAGG
* * *
2594130 TAGTTTAACGTAATAGGTAGTGTCTATTTTATTTTACTGTTTACATTATTAGTAACCTTGAAATA
1 TAGTTTAACGTAATAGGTAGCGTCTATTTTATTTTACTGTTTACATTATTAGTAACCTTCAAACA
2594195 AACCAAT-GAA
66 AACCAATAG-A
* * * *
2594205 TATTTTAACGTAATAGGTAGCGCCTATTTTATTTTACTGTTTATATTATTAGTAACTTTCAAACA
1 TAGTTTAACGTAATAGGTAGCGTCTATTTTATTTTACTGTTTACATTATTAGTAACCTTCAAACA
** *
2594270 AACCGGTAGG
66 AACCAATAGA
* *
2594280 TAGTTTAACATAATAGGTACCGTCTATTTTATTTTA
1 TAGTTTAACGTAATAGGTAGCGTCTATTTTATTTTA
2594316 ACCGATTAAG
Statistics
Matches: 96, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
75 95 0.99
76 1 0.01
ACGTcount: A:0.32, C:0.12, G:0.13, T:0.42
Consensus pattern (75 bp):
TAGTTTAACGTAATAGGTAGCGTCTATTTTATTTTACTGTTTACATTATTAGTAACCTTCAAACA
AACCAATAGA
Found at i:2603756 original size:2 final size:2
Alignment explanation
Indices: 2603749--2603779 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
2603739 TTCTGACAGC
2603749 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2603780 GCTTATAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2606460 original size:2 final size:2
Alignment explanation
Indices: 2606453--2606477 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2606443 CAAATTTTAA
2606453 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2606478 AAAAGGAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2607924 original size:3 final size:3
Alignment explanation
Indices: 2607907--2607981 Score: 127
Period size: 3 Copynumber: 25.3 Consensus size: 3
2607897 GAGTTGAAGG
2607907 ATA A-A ATA ATAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
2607952 ATA ATA AT- ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
2607982 CATCTCACAC
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
2 4 0.06
3 62 0.90
4 3 0.04
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:2610166 original size:27 final size:28
Alignment explanation
Indices: 2610135--2610193 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
2610125 TTATGTACCA
2610135 AAATCA-TGAAATAGCTTTGTATTTTCC
1 AAATCATTGAAATAGCTTTGTATTTTCC
2610162 AAATCATTGAAATAGCTTTGTATTTTCC
1 AAATCATTGAAATAGCTTTGTATTTTCC
2610190 AAAT
1 AAAT
2610194 TGAATTGGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 6 0.19
28 25 0.81
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.41
Consensus pattern (28 bp):
AAATCATTGAAATAGCTTTGTATTTTCC
Found at i:2610967 original size:20 final size:20
Alignment explanation
Indices: 2610935--2610979 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
2610925 TTAAAAAGAG
*
2610935 AAAA-TGACATCACTTTTAA
1 AAAATTGACATCACTTTAAA
*
2610954 AAAATTGACTTCACTTTAAA
1 AAAATTGACATCACTTTAAA
2610974 AAAATT
1 AAAATT
2610980 ATAATAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.49, C:0.13, G:0.04, T:0.33
Consensus pattern (20 bp):
AAAATTGACATCACTTTAAA
Found at i:2614397 original size:17 final size:18
Alignment explanation
Indices: 2614372--2614418 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
2614362 TATGGAATTG
*
2614372 GATTCCAATTCC-TGACA
1 GATTTCAATTCCTTGACA
* *
2614389 GATTTCAATTCCTTTACG
1 GATTTCAATTCCTTGACA
2614407 GATTTCAATTCC
1 GATTTCAATTCC
2614419 CATAAACATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 11 0.42
18 15 0.58
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.38
Consensus pattern (18 bp):
GATTTCAATTCCTTGACA
Found at i:2614710 original size:65 final size:66
Alignment explanation
Indices: 2614599--2614730 Score: 257
Period size: 65 Copynumber: 2.0 Consensus size: 66
2614589 AAATCACCTT
2614599 TGACATCGACGTTTAGGACAATATGATATTAGTCTTGGCTGAGAATTTTGGTTCCTACACTCACT
1 TGACATCGACGTTTAGGACAATATGATATTAGTCTTGGCTGAGAATTTTGGTTCCTACACTCACT
2614664 A
66 A
2614665 TGACATCGACGTTTAGGACAATA-GATATTAGTCTTGGCTGAGAATTTTGGTTCCTACACTCACT
1 TGACATCGACGTTTAGGACAATATGATATTAGTCTTGGCTGAGAATTTTGGTTCCTACACTCACT
2614729 A
66 A
2614730 T
1 T
2614731 AGTATAAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
65 43 0.65
66 23 0.35
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (66 bp):
TGACATCGACGTTTAGGACAATATGATATTAGTCTTGGCTGAGAATTTTGGTTCCTACACTCACT
A
Done.