Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007961.1 Hibiscus syriacus cultivar Beakdansim tig00110388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2700559
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 12
Found at i:775767 original size:24 final size:24
Alignment explanation
Indices: 775709--775758 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
775699 TCTATTATAT
775709 TTAGAGAAA-ATCTACCTATGGTA
1 TTAGAGAAATATCTACCTATGGTA
*
775732 TTAGAGAAATATCTGCCTATGGTA
1 TTAGAGAAATATCTACCTATGGTA
775756 TTA
1 TTA
775759 TATATATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (24 bp):
TTAGAGAAATATCTACCTATGGTA
Found at i:776121 original size:2 final size:2
Alignment explanation
Indices: 776114--776158 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
776104 TATCCTCGTG
776114 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
776156 TA T
1 TA T
776159 TAGAATTTTG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:776332 original size:25 final size:25
Alignment explanation
Indices: 776304--776363 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
776294 ATATTTTAAT
* *
776304 CTATTATATTTAGAGAAACATCTAC
1 CTATGATATTTAGAAAAACATCTAC
* * *
776329 CTATGGTATTTAGAAAAATATCTGC
1 CTATGATATTTAGAAAAACATCTAC
*
776354 CTATGGTATT
1 CTATGATATT
776364 ATATATATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38
Consensus pattern (25 bp):
CTATGATATTTAGAAAAACATCTAC
Found at i:776692 original size:21 final size:21
Alignment explanation
Indices: 776668--776806 Score: 129
Period size: 21 Copynumber: 6.7 Consensus size: 21
776658 ACGTTGCATT
*
776668 TCGCATTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
** ** **
776689 TCGCGTTGCG-TTTTTCCATT
1 TCGCGTTGCGATAGTTGAAAA
* **
776709 TCGCGTTGCGATAGTTGCATG
1 TCGCGTTGCGATAGTTGAAAA
776730 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
* ** **
776751 TCGCGTTGCGAT-TTTCCATT
1 TCGCGTTGCGATAGTTGAAAA
776771 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTGAAAA
776792 TCGCGTTGCGATAGT
1 TCGCGTTGCGATAGT
776807 CTACAGTCGC
Statistics
Matches: 92, Mismatches: 24, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
20 29 0.32
21 63 0.68
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.35
Consensus pattern (21 bp):
TCGCGTTGCGATAGTTGAAAA
Found at i:776742 original size:62 final size:62
Alignment explanation
Indices: 776660--776847 Score: 279
Period size: 62 Copynumber: 3.0 Consensus size: 62
776650 GCAAATTCAC
* * *
776660 GTTGCATTTCGCATTGCGATAGTTGAAAATCGCGTTGCGTTTTTCCATTTCGCGTTGCGATA
1 GTTGCATATCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATA
*
776722 GTTGCATGTCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATA
1 GTTGCATATCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATA
* * * * *
776784 GTTGAAAATCGCGTTGCGATAGTCT-ACAGTCGCATTGCGATTTTCCATTTCGCGTTGCGATA
1 GTTGCATATCGCGTTGCGATAGT-TGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATA
776846 GT
1 GT
776848 ATACGCGCGG
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
62 115 0.99
63 1 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (62 bp):
GTTGCATATCGCGTTGCGATAGTTGAAAATCGCGTTGCGATTTTCCATTTCGCGTTGCGATA
Found at i:776775 original size:41 final size:42
Alignment explanation
Indices: 776709--776824 Score: 164
Period size: 41 Copynumber: 2.8 Consensus size: 42
776699 TTTTTCCATT
*
776709 TCGCGTTGCGATAGTTGCATGTCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTCCATGTCGCGTTGCGATAGTTGAAAA
* *
776751 TCGCGTTGCGAT-TTTCCATTTCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTTCCATGTCGCGTTGCGATAGTTGAAAA
* *
776792 TCGCGTTGCGATAGTCTACA-GTCGCATTGCGAT
1 TCGCGTTGCGATAGT-TCCATGTCGCGTTGCGAT
776825 TTTCCATTTC
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
41 38 0.58
42 24 0.37
43 3 0.05
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.33
Consensus pattern (42 bp):
TCGCGTTGCGATAGTTCCATGTCGCGTTGCGATAGTTGAAAA
Found at i:776816 original size:21 final size:20
Alignment explanation
Indices: 776668--776847 Score: 105
Period size: 21 Copynumber: 8.8 Consensus size: 20
776658 ACGTTGCATT
* *
776668 TCGCATTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTT-ACAA
** * *
776689 TCGCGTTGCG-TTTTTCCATT
1 TCGCGTTGCGATAGTTACA-A
* *
776709 TCGCGTTGCGATAGTTGCATG
1 TCGCGTTGCGATAGTTACA-A
*
776730 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTT-ACAA
* * *
776751 TCGCGTTGCGAT-TTTCCATT
1 TCGCGTTGCGATAGTTACA-A
*
776771 TCGCGTTGCGATAGTTGAAAA
1 TCGCGTTGCGATAGTT-ACAA
*
776792 TCGCGTTGCGATAGTCTACAG
1 TCGCGTTGCGATAGT-TACAA
* * * *
776813 TCGCATTGCGAT-TTTCCATT
1 TCGCGTTGCGATAGTTACA-A
776833 TCGCGTTGCGATAGT
1 TCGCGTTGCGATAGT
776848 ATACGCGCGG
Statistics
Matches: 121, Mismatches: 29, Indels: 18
0.72 0.17 0.11
Matches are distributed among these distances:
19 5 0.04
20 39 0.32
21 74 0.61
22 3 0.02
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (20 bp):
TCGCGTTGCGATAGTTACAA
Found at i:776898 original size:6 final size:6
Alignment explanation
Indices: 776878--776915 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
776868 GACACGTATT
776878 ACCACG ACC-CG ACCACG ACCACG ACCACG ACCACG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC
776916 GACCCGACCG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.32, C:0.53, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:776910 original size:18 final size:17
Alignment explanation
Indices: 776878--776943 Score: 81
Period size: 14 Copynumber: 4.2 Consensus size: 17
776868 GACACGTATT
776878 ACCACGACCCGACCACG
1 ACCACGACCCGACCACG
776895 ACCACGACCACGACCACG
1 ACCACGACC-CGACCACG
776913 A-C-CGACCCGA-C-CG
1 ACCACGACCCGACCACG
776926 ACC-CGACCCGACC-CG
1 ACCACGACCCGACCACG
776941 ACC
1 ACC
776944 CGAGACGGAC
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
13 3 0.07
14 10 0.22
15 9 0.20
16 5 0.11
17 10 0.22
18 9 0.20
ACGTcount: A:0.27, C:0.55, G:0.18, T:0.00
Consensus pattern (17 bp):
ACCACGACCCGACCACG
Found at i:776924 original size:5 final size:5
Alignment explanation
Indices: 776882--776946 Score: 80
Period size: 5 Copynumber: 12.6 Consensus size: 5
776872 CGTATTACCA
776882 CGACC CGACC ACGACC ACGACC ACGACC ACGA-C CGACC CGA-C CGACC
1 CGACC CGACC -CGACC -CGACC -CGACC -CGACC CGACC CGACC CGACC
776929 CGACC CGACC CGACC CGA
1 CGACC CGACC CGACC CGA
776947 GACGGACGGC
Statistics
Matches: 57, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
4 7 0.12
5 29 0.51
6 21 0.37
ACGTcount: A:0.26, C:0.54, G:0.20, T:0.00
Consensus pattern (5 bp):
CGACC
Found at i:786482 original size:29 final size:29
Alignment explanation
Indices: 786440--786498 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
786430 AATTTCACCT
786440 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
786469 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
786498 A
1 A
786499 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:788061 original size:435 final size:434
Alignment explanation
Indices: 787249--788120 Score: 1621
Period size: 435 Copynumber: 2.0 Consensus size: 434
787239 TTTTGATATT
787249 TGGTTCCATTAGCGTTGAAGTTGACTTGCATTCGAGCATTCCAAACCTCTTCAACAAATCTTTAG
1 TGGTTCCATTAGCGTTGAAGTTGACTTGCATTCGAGCATTCCAAACCTCTTCAACAAATCTTTAG
787314 CATATTTCTGTTGACATAGAAATATTCTTCGTGTGTGCGATCAACCTCTAGACCAAGGAAGTGCT
66 CATATTTCTGTTGACATAGAAATATTCTTCGTGTGTGCGATCAACCTCTAGACCAAGGAAGTGCT
787379 TAAGTTGTCCAAGTTCCTTCATCTGGAAATGAACTGATAAATTCCCTCGTCTGAAGAATTTTGCC
131 TAAGTTGTCCAAGTTCCTTCATCTGGAAATGAACTGATAAATTCCCTCGTCTGAAGAATTTTGCC
787444 TCATCATCACCGGTTATGATTAAGTCAATCCACGTACACTAGCACAATAGCTAGCTTACCTTCAT
196 TCATCATCACCGGTTATGATTAAGTCAATCCACGTACACTAGCACAATAGCTAGCTTACCTTCAT
787509 GGCTTTGACAAACAAGCTAGAATCTACAGGTGTTACTGAATAACCACTTTTCGTTAGAAATTCAG
261 GGCTTTGAC-AACAAGCTAGAATCTACAGGTGTTACTGAATAACCACTTTTCGTTAGAAATTCAG
787574 CAATCTTACCATACCACGCCCTAGGTGCTTGTTTCAATCTGTAGAGTGCTTTTCGCAGCTT-ACA
325 CAATCTTACCATACCACGCCCTAGGTGCTTGTTTCAATCTGTAGAGTGCTTTTCGCAGCTTAACA
787638 CATATTCAGGAAGATCTTGACTTTGAAAACCCATTGGTTGGGTCATG
390 CATATTCAGGAAGATCTTGACTTTGAAAACCCA-TGGTT-GGTCATG
787685 TGGTTCCATTAGCGTTGAAGTTGACTTGCATTCGAGCATTCCAAACCTCTTCAAC-AATCTTTAG
1 TGGTTCCATTAGCGTTGAAGTTGACTTGCATTCGAGCATTCCAAACCTCTTCAACAAATCTTTAG
787749 CATATTTCTGTTGACATAGAAATATTCCTTCGTGTGTGCGATCAACCTCTAGACCAAGGAAGTGC
66 CATATTTCTGTTGACATAGAAATATT-CTTCGTGTGTGCGATCAACCTCTAGACCAAGGAAGTGC
787814 TTAAGTTGTCCAAGTTCCTTCATCTGGAAATGAACTGATAAATTCTCCTTCGTCTGAAGAATTTC
130 TTAAGTTGTCCAAGTTCCTTCATCTGGAAATGAACTGATAAATTC-CC-TCGTCTGAAGAATTT-
787879 TGCCTCATCATCACCGGTTATGATTAAGTC-ATCCACGTACACTAGCACAATAGCTA-CTTACCT
192 TGCCTCATCATCACCGGTTATGATTAAGTCAATCCACGTACACTAGCACAATAGCTAGCTTACCT
787942 TCATTGGCTTTGAC-AC-AGCTAGAATCTACAGGTGTTACTGAATAACCACTTTTCGTTAGAAAT
257 TCA-TGGCTTTGACAACAAGCTAGAATCTACAGGTGTTACTGAATAACCACTTTTCGTTAGAAAT
788005 TCAGCAATCTTACCATACCACGCCCTAGGTGCTTGTTTCAATCTGTAGAGTGCTTTTCGCAGCTT
321 TCAGCAATCTTACCATACCACGCCCTAGGTGCTTGTTTCAATCTGTAGAGTGCTTTTCGCAGCTT
788070 ACACACATATTCAGGAAGATCTTGACTTTGAAAACCCATGGTTGGTCATG
386 A-ACACATATTCAGGAAGATCTTGACTTTGAAAACCCATGGTTGGTCATG
788120 T
1 T
788121 ATCTCCCGAT
Statistics
Matches: 429, Mismatches: 0, Indels: 15
0.97 0.00 0.03
Matches are distributed among these distances:
435 155 0.36
436 145 0.34
437 48 0.11
438 51 0.12
439 30 0.07
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (434 bp):
TGGTTCCATTAGCGTTGAAGTTGACTTGCATTCGAGCATTCCAAACCTCTTCAACAAATCTTTAG
CATATTTCTGTTGACATAGAAATATTCTTCGTGTGTGCGATCAACCTCTAGACCAAGGAAGTGCT
TAAGTTGTCCAAGTTCCTTCATCTGGAAATGAACTGATAAATTCCCTCGTCTGAAGAATTTTGCC
TCATCATCACCGGTTATGATTAAGTCAATCCACGTACACTAGCACAATAGCTAGCTTACCTTCAT
GGCTTTGACAACAAGCTAGAATCTACAGGTGTTACTGAATAACCACTTTTCGTTAGAAATTCAGC
AATCTTACCATACCACGCCCTAGGTGCTTGTTTCAATCTGTAGAGTGCTTTTCGCAGCTTAACAC
ATATTCAGGAAGATCTTGACTTTGAAAACCCATGGTTGGTCATG
Found at i:791515 original size:29 final size:29
Alignment explanation
Indices: 791473--791531 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
791463 ATTTTCACCT
791473 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
791502 AACTAAATTGATGTAAGCAATGACATCAA
1 AACTAAATTGATGTAAGCAATGACATCAA
791531 A
1 A
791532 TTAATTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.24
Consensus pattern (29 bp):
AACTAAATTGATGTAAGCAATGACATCAA
Found at i:793412 original size:32 final size:33
Alignment explanation
Indices: 793369--793432 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 33
793359 CCTGGATTGT
*
793369 TTAGGTAGAAACTCTCTTGTAGT-ATGAGGAAC
1 TTAGGTAGAAACTCACTTGTAGTCATGAGGAAC
* * *
793401 TTAGGTGGAAACTGAGTTGTAGTCATGAGGAA
1 TTAGGTAGAAACTCACTTGTAGTCATGAGGAA
793433 ATTTCGGTAC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 19 0.70
33 8 0.30
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (33 bp):
TTAGGTAGAAACTCACTTGTAGTCATGAGGAAC
Found at i:796572 original size:30 final size:31
Alignment explanation
Indices: 796512--796644 Score: 180
Period size: 31 Copynumber: 4.3 Consensus size: 31
796502 GTTCATTTTT
* * *
796512 AATTTGACTCTTAAATTTTAGATAAAATATC
1 AATTTGACCCATAAACTTTAGATAAAATATC
*
796543 AATTTGATTCC-TAAACTTTAGAT-AAATATC
1 AATTTGA-CCCATAAACTTTAGATAAAATATC
*
796573 AATTTGACCCATAAACTTTAGTTAAAATATC
1 AATTTGACCCATAAACTTTAGATAAAATATC
*
796604 AATTTGACCCATAAACTTTAGTTAAAATATC
1 AATTTGACCCATAAACTTTAGATAAAATATC
*
796635 AATTTAACCC
1 AATTTGACCC
796645 TTAATTCTAA
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
29 2 0.02
30 25 0.27
31 65 0.70
32 1 0.01
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (31 bp):
AATTTGACCCATAAACTTTAGATAAAATATC
Found at i:796607 original size:61 final size:62
Alignment explanation
Indices: 796512--796644 Score: 180
Period size: 61 Copynumber: 2.2 Consensus size: 62
796502 GTTCATTTTT
* * * *
796512 AATTTGACTCTTAAATTTTAGATAAAATATCAATTTGATTCC-TAAACTTTAGAT-AAATATC
1 AATTTGACCCATAAACTTTAGATAAAATATCAATTTGA-CCCATAAACTTTAGATAAAATATC
* *
796573 AATTTGACCCATAAACTTTAGTTAAAATATCAATTTGACCCATAAACTTTAGTTAAAATATC
1 AATTTGACCCATAAACTTTAGATAAAATATCAATTTGACCCATAAACTTTAGATAAAATATC
*
796635 AATTTAACCC
1 AATTTGACCC
796645 TTAATTCTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
60 2 0.03
61 45 0.71
62 16 0.25
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (62 bp):
AATTTGACCCATAAACTTTAGATAAAATATCAATTTGACCCATAAACTTTAGATAAAATATC
Found at i:800516 original size:12 final size:12
Alignment explanation
Indices: 800498--800528 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
800488 ATTATACGGT
800498 ATGAACAATACC
1 ATGAACAATACC
*
800510 GTGAACAATACC
1 ATGAACAATACC
800522 ATGAACA
1 ATGAACA
800529 GTGAAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.48, C:0.23, G:0.13, T:0.16
Consensus pattern (12 bp):
ATGAACAATACC
Found at i:800960 original size:2 final size:2
Alignment explanation
Indices: 800953--800977 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
800943 GCATGCATGC
800953 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
800978 CAGTCATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:806624 original size:17 final size:16
Alignment explanation
Indices: 806597--806641 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
806587 TTGTTTGTGT
806597 TTTTTTCTTTTCTTTTC
1 TTTTTT-TTTTCTTTTC
* *
806614 TCTTTTTTTTTGTTTTG
1 T-TTTTTTTTTCTTTTC
806631 TTTTTTTTTTC
1 TTTTTTTTTTC
806642 CACTGAAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 9 0.38
17 10 0.42
18 5 0.21
ACGTcount: A:0.00, C:0.11, G:0.04, T:0.84
Consensus pattern (16 bp):
TTTTTTTTTTCTTTTC
Found at i:812677 original size:18 final size:17
Alignment explanation
Indices: 812654--812695 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
812644 ATTTTGTTTG
812654 TTTTTTTTTCTTTTCTCT
1 TTTTTTTTTCTTTTCT-T
* *
812672 TTTTTTTTTGTTTTGTT
1 TTTTTTTTTCTTTTCTT
812689 TTTTTTT
1 TTTTTTT
812696 CACTGAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.00, C:0.07, G:0.05, T:0.88
Consensus pattern (17 bp):
TTTTTTTTTCTTTTCTT
Found at i:813901 original size:7 final size:7
Alignment explanation
Indices: 813891--813916 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
813881 AATAGAAATT
813891 AAAAAAG
1 AAAAAAG
813898 AAAAAAG
1 AAAAAAG
813905 AAAAAAG
1 AAAAAAG
813912 AAAAA
1 AAAAA
813917 TTGGGTTGCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:813907 original size:26 final size:26
Alignment explanation
Indices: 813854--813914 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
813844 AAATCAAGGA
*
813854 AAAATA-AAATAAAATAAAAAGAACG
1 AAAATAGAAATAAAATAAAAAGAAAG
813879 AAAATAGAAATTAAAA-AAGAAA-AAAG
1 AAAATAGAAA-TAAAATAA-AAAGAAAG
*
813905 AAAAAAGAAA
1 AAAATAGAAA
813915 AATTGGGTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 6 0.19
26 17 0.55
27 8 0.26
ACGTcount: A:0.79, C:0.02, G:0.10, T:0.10
Consensus pattern (26 bp):
AAAATAGAAATAAAATAAAAAGAAAG
Found at i:820668 original size:18 final size:21
Alignment explanation
Indices: 820623--820678 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
820613 AGATGCATTC
*
820623 TATATAATTTGAATTTATTTA
1 TATAAAATTTGAATTTATTTA
820644 TATAAAATTT-AATTT-TTTA
1 TATAAAATTTGAATTTATTTA
820663 -ATAAAATATTAGAATT
1 TATAAAAT-TT-GAATT
820679 ATTAAAGAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
18 7 0.23
19 6 0.19
20 5 0.16
21 13 0.42
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.52
Consensus pattern (21 bp):
TATAAAATTTGAATTTATTTA
Found at i:824596 original size:24 final size:24
Alignment explanation
Indices: 824569--824619 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
824559 AAATAAGCAA
824569 TGGCATTCATTGATAATCCCCATT
1 TGGCATTCATTGATAATCCCCATT
824593 TGGCATTCATTGATAATCCCCATT
1 TGGCATTCATTGATAATCCCCATT
824617 TGG
1 TGG
824620 TGAAGTCTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (24 bp):
TGGCATTCATTGATAATCCCCATT
Found at i:825954 original size:7 final size:7
Alignment explanation
Indices: 825938--825993 Score: 69
Period size: 7 Copynumber: 7.7 Consensus size: 7
825928 TGTAAATTGT
825938 AGATTATA
1 AGATT-TA
825946 AGATTTA
1 AGATTTA
825953 AGATTTA
1 AGATTTA
825960 AGATTTTA
1 AGA-TTTA
825968 A-ATTTTA
1 AGA-TTTA
*
825975 AAATTTA
1 AGATTTA
825982 AGATTTA
1 AGATTTA
825989 AGATT
1 AGATT
825994 AAAATTATAT
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
7 34 0.76
8 11 0.24
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.45
Consensus pattern (7 bp):
AGATTTA
Found at i:825963 original size:22 final size:21
Alignment explanation
Indices: 825938--825999 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 21
825928 TGTAAATTGT
*
825938 AGATTATAAGATTTAAGATTTA
1 AGATT-TAAGATTTAAAATTTA
825960 AGATTTTAA-ATTTTAAAATTTA
1 AGA-TTTAAGA-TTTAAAATTTA
825982 AGATTTAAGA-TTAAAATT
1 AGATTTAAGATTTAAAATT
826000 ATATACAAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
20 8 0.22
21 6 0.17
22 20 0.56
23 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.44
Consensus pattern (21 bp):
AGATTTAAGATTTAAAATTTA
Found at i:845276 original size:137 final size:133
Alignment explanation
Indices: 844975--845313 Score: 407
Period size: 137 Copynumber: 2.5 Consensus size: 133
844965 TTTGATGCAT
* * *
844975 AATTAGT-CTTTAATTTAGGAAATTTTTAATTTGGTCCTCGCTTTTGCTCGAGGTTCCATTTTAA
1 AATTAGTCCTTTAATTTAGGGAATTTTTAATTTGGTCATCGCTTATGCTCGAGGTTCCATTTTAA
* * * * * *
845039 TCATTCAATCAATATTAATTAAATTGAATAGGTTGATTTTAAAGCCTTTACTTTAGTTTTAATTT
66 TTATTCAATCAATATTAATAAAATTGAATAGGTTGATATTAAAGCCTTCACTTTAGGTCTAATTT
845104 TAA
131 TAA
** *
845107 AATTAGTCCTAAAATTTAGGGAATTTTTAATTTGGTCATAGCTTATGCTCGAGGTTCCATTTTAA
1 AATTAGTCCTTTAATTTAGGGAATTTTTAATTTGGTCATCGCTTATGCTCGAGGTTCCATTTTAA
* *
845172 TTATTCAAATCAATAATTGAGTAAAATT-AATTAGGATTGATATTAGAGCCTTCACTTTAGGTCT
66 TTATTC-AATCAAT-ATT-AATAAAATTGAA-TAGG-TTGATATTAAAGCCTTCACTTTAGGTCT
845236 AATTTT-A
126 AATTTTAA
** * * * * *
845243 TTTTAGTCCTTTAATTTAAGGGAATTCTTAATTTGGTCTTCCCTCATGCTCGAGTTTCCA-TTTA
1 AATTAGTCCTTTAATTT-AGGGAATTTTTAATTTGGTCATCGCTTATGCTCGAGGTTCCATTTTA
845307 ATTATTC
65 ATTATTC
845314 GATTTAATAA
Statistics
Matches: 176, Mismatches: 24, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
132 7 0.04
133 56 0.32
134 7 0.04
135 5 0.03
136 36 0.20
137 65 0.37
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (133 bp):
AATTAGTCCTTTAATTTAGGGAATTTTTAATTTGGTCATCGCTTATGCTCGAGGTTCCATTTTAA
TTATTCAATCAATATTAATAAAATTGAATAGGTTGATATTAAAGCCTTCACTTTAGGTCTAATTT
TAA
Found at i:854262 original size:45 final size:44
Alignment explanation
Indices: 854155--854265 Score: 125
Period size: 45 Copynumber: 2.5 Consensus size: 44
854145 GAATAAATGT
* * * * *
854155 ATGCGAACTAGAAATCATGCGGTTATGTTTATTTTTTGAGCATGT
1 ATGCGAACTAG-AATCATGCGGCTAGGTTTATTTTTTGAACAAGC
854200 ATGCGAACTAGAAATCATGCGGCTAGGTTTATTTTTCTCGAACAAGC
1 ATGCGAACTAG-AATCATGCGGCTAGGTTTATTTTT-T-GAACAAGC
*
854247 ATGCGAATTAG-ATCATGCG
1 ATGCGAACTAGAATCATGCG
854266 TTAGGATTTT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
45 42 0.72
46 1 0.02
47 15 0.26
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (44 bp):
ATGCGAACTAGAATCATGCGGCTAGGTTTATTTTTTGAACAAGC
Found at i:855426 original size:72 final size:72
Alignment explanation
Indices: 855309--855457 Score: 244
Period size: 72 Copynumber: 2.1 Consensus size: 72
855299 CCCTATTACA
* * * *
855309 CAAGAAAATATGAAGACTTCGGGTGAGAATCTGAATGTTAGTGGTGCAGTCAATGTGATGATAGC
1 CAAGAAAAGATGAAAACTTCGAGTGAGAATCTGAATGTTAGTGGTGCAGCCAATGTGATGATAGC
855374 AAATGAT
66 AAATGAT
*
855381 CAAGAACAGATGAAAACTTCGAGTGAGAATCTGAATGTTAGTGGTGCAGCCAATGTGATGATAGC
1 CAAGAAAAGATGAAAACTTCGAGTGAGAATCTGAATGTTAGTGGTGCAGCCAATGTGATGATAGC
*
855446 AACTGAT
66 AAATGAT
855453 CAAGA
1 CAAGA
855458 CCTGTTAGGG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.37, C:0.12, G:0.27, T:0.24
Consensus pattern (72 bp):
CAAGAAAAGATGAAAACTTCGAGTGAGAATCTGAATGTTAGTGGTGCAGCCAATGTGATGATAGC
AAATGAT
Found at i:859922 original size:36 final size:37
Alignment explanation
Indices: 859881--859981 Score: 118
Period size: 36 Copynumber: 2.8 Consensus size: 37
859871 AAGTCTTCAC
*
859881 CAAAGAGTAGTGAAGCAAATCCATTTTGA-CCTCCA-
1 CAAAGAGTAGTGAAGCAAATCCATTTTAAGCCTCCAT
* *
859916 CTAAAGAGTAGTGAAGCAAA-CCATCTTAAGCCTTCAT
1 C-AAAGAGTAGTGAAGCAAATCCATTTTAAGCCTCCAT
* * *
859953 CGAAGAGTAGTGAAGCATATCCTTTTTAA
1 CAAAGAGTAGTGAAGCAAATCCATTTTAA
859982 ACCTTCTCGG
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
35 8 0.15
36 39 0.71
37 8 0.15
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.26
Consensus pattern (37 bp):
CAAAGAGTAGTGAAGCAAATCCATTTTAAGCCTCCAT
Found at i:859996 original size:37 final size:35
Alignment explanation
Indices: 859883--859997 Score: 106
Period size: 36 Copynumber: 3.2 Consensus size: 35
859873 GTCTTCACCA
* * * *
859883 AAGAGTAGTGAAGCAAATCCATTTT-GACCTCCACTA
1 AAGAGTAGTGAAGC-AATCCATTTTAAACCTTCTC-G
* * *
859919 AAGAGTAGTGAAGCAAACCATCTTAAGCCTTCATCG
1 AAGAGTAGTGAAGCAATCCATTTTAAACCTTC-TCG
*
859955 AAGAGTAGTGAAGCATATCCTTTTTAAACCTTCTCGG
1 AAGAGTAGTGAAGCA-ATCCATTTTAAACCTTCTC-G
859992 AAGAGT
1 AAGAGT
859998 GTTGGAGCAA
Statistics
Matches: 64, Mismatches: 11, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
35 8 0.12
36 35 0.55
37 21 0.33
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (35 bp):
AAGAGTAGTGAAGCAATCCATTTTAAACCTTCTCG
Found at i:860364 original size:37 final size:36
Alignment explanation
Indices: 860293--860371 Score: 104
Period size: 37 Copynumber: 2.2 Consensus size: 36
860283 GTCGACCTTC
* * *
860293 GAAGCAAATCAACTTAAGTCTTCACGAGAGAGTAGT
1 GAAGCAAATCAACTGAAGTCTTCACAAGAAAGTAGT
*
860329 GAAGCAAATCATCTAGAAGTCTTCACAAGAAAGTAGT
1 GAAGCAAATCAACT-GAAGTCTTCACAAGAAAGTAGT
*
860366 AAAGCA
1 GAAGCA
860372 GAAGAAGATG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
36 13 0.35
37 24 0.65
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.20
Consensus pattern (36 bp):
GAAGCAAATCAACTGAAGTCTTCACAAGAAAGTAGT
Found at i:860495 original size:52 final size:54
Alignment explanation
Indices: 860371--860503 Score: 225
Period size: 54 Copynumber: 2.5 Consensus size: 54
860361 GTAGTAAAGC
860371 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
1 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
* *
860425 AGAAGAAGATATTCGAGTTCCATACTCCCTAGATAAAGA-GG-GCGAACCCGTA
1 AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
*
860477 AGAAGAAGATGTTTGAGTTCCATACTC
1 AGAAGAAGATGTTCGAGTTCCATACTC
860504 TCTGAAGGAA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
52 36 0.48
53 2 0.03
54 37 0.49
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (54 bp):
AGAAGAAGATGTTCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTA
Found at i:860838 original size:55 final size:55
Alignment explanation
Indices: 860481--861051 Score: 552
Period size: 55 Copynumber: 10.8 Consensus size: 55
860471 CCCGTAAGAA
* * * *
860481 GAAGA-TGTTTGAGTTCCATACTCTCTGAAGGAATAGGGAGCGGACACGTTTGTT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACACGTTTATT
* *
860535 GAAGA----TCGAGTCCTATACTCTCTAAAGGAATAGGGAGCG-ACACG-TTATT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACACGTTTATT
* * * *
860584 GAAGA----TCGAG-TCTTATACTCTCTGAAGGAATAGAGAGCGGACCCTTTTA-T
1 GAAGATTGTTCGAGTTC-TATACTCTCTGAAGGAATAGGGAGCGAACACGTTTATT
* * * *
860634 GAAGATTGCTCGAGTTCTATACT-TCTGAATGAATAGGGAGCAAACACGTTTGTT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACACGTTTATT
* * *
860688 AAAGA---TT-GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACACGTTTATT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACACGTTTATT
* *
860739 GAAGA----TCGAG-TCTTATACTCTCTGAAGGAATAGGGAGC-AGACCCGTTTGTT
1 GAAGATTGTTCGAGTTC-TATACTCTCTGAAGGAATAGGGAGCGA-ACACGTTTATT
* * * * *
860790 GAAGATTGTTCGAGTTCTATACTCTCTGAAAGAATAGAGAGTGAACCCGTTTGTT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACACGTTTATT
** *
860845 GAAGATTGTTTAAGTTCTATACTCTCTGAAGGAATAGAGAGCGAAC-CTGTTTATT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACAC-GTTTATT
* * * *
860900 GAAGATTTTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACCCGTTTTATT
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACACG-TTTATT
* * *
860956 GAAGATTGTTCAAGTTTTATACTCTCTGAATGAATAGGGAGC-AGACACGTTTA-T
1 GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGA-ACACGTTTATT
*
861010 GAAGATTGTTCGAG-TCTTATACT-TCCTGAAGGAATAGAGAGC
1 GAAGATTGTTCGAGTTC-TATACTCT-CTGAAGGAATAGGGAGC
861052 ATGCTCGTCA
Statistics
Matches: 440, Mismatches: 52, Indels: 50
0.81 0.10 0.09
Matches are distributed among these distances:
48 1 0.00
49 38 0.09
50 27 0.06
51 107 0.24
53 24 0.05
54 57 0.13
55 135 0.31
56 51 0.12
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (55 bp):
GAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGAACACGTTTATT
Found at i:863774 original size:131 final size:131
Alignment explanation
Indices: 863630--863895 Score: 507
Period size: 131 Copynumber: 2.0 Consensus size: 131
863620 ACGTAAAGAA
863630 TTTCAAAATTTTCGAAACGAGAGGTTTTTAAAT-GTATTTGTTTTTAAATTAAAAAATCAATTGA
1 TTTCAAAATTTTCGAAACGAGAGGTTTTTAAATCGTATTTGTTTTTAAATT-AAAAATCAATTGA
863694 AAGAGATAAGTTAAAAATTGATGTGGTTTTCAAAATCTCACATTTTCACCTTTTGAGGGAATAAT
65 AAGAGATAAGTTAAAAATTGATGTGGTTTTCAAAATCTCACATTTTCACCTTTTGAGGGAATAAT
863759 CG
130 CG
863761 TTTCAAAATTTTCGAAACGAGAGGTTTTTAAATCGTATTTGTTTTTAAATTAAAAATCAATTGAA
1 TTTCAAAATTTTCGAAACGAGAGGTTTTTAAATCGTATTTGTTTTTAAATTAAAAATCAATTGAA
*
863826 AGAGATAAGTTAAAAATTGATGTGGTTTTCAAAATCTCACCTTTTCACCTTTTGAGGGAATAATC
66 AGAGATAAGTTAAAAATTGATGTGGTTTTCAAAATCTCACATTTTCACCTTTTGAGGGAATAATC
863891 G
131 G
863892 TTTC
1 TTTC
863896 GACAATTGCT
Statistics
Matches: 133, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
131 116 0.87
132 17 0.13
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (131 bp):
TTTCAAAATTTTCGAAACGAGAGGTTTTTAAATCGTATTTGTTTTTAAATTAAAAATCAATTGAA
AGAGATAAGTTAAAAATTGATGTGGTTTTCAAAATCTCACATTTTCACCTTTTGAGGGAATAATC
G
Found at i:865999 original size:9 final size:9
Alignment explanation
Indices: 865985--866012 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
865975 GACTGGATCG
865985 ACCGGTTCA
1 ACCGGTTCA
865994 ACCGGTTCA
1 ACCGGTTCA
866003 ACCGGTTCA
1 ACCGGTTCA
866012 A
1 A
866013 TCGGGAACCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.21
Consensus pattern (9 bp):
ACCGGTTCA
Found at i:867136 original size:866 final size:868
Alignment explanation
Indices: 864790--867392 Score: 4161
Period size: 879 Copynumber: 3.0 Consensus size: 868
864780 ATATTATAAA
*
864790 CTCAAATTAGACAAGTGTAGTCGTAA-T-TATTCATTTTCTTATGTATTGTTTTGATACTGTGAA
1 CTCATATTAGACAAG-GTAGTCGTAATTATATTCATTTTCTTATGTATTGTTTTGATACTGTGAA
*
864853 TGTAGGTAAATTCCTT-AATGTCAAATTCATCTTTAAATCTAAC-TTCCTCTATTATGTATATTG
65 TGTAAGTAAATTCCTTAAATGTCAAATTCATCTTTAAATCTAACTTTCCTCTATTATGTATATTG
*
864916 ATGAAGTATGTATGT-TTTTGAAATAAAAATTAATGTTTGAATTTGGTAATAAGGTTGGTAATGA
130 ATGAAGTATGCATGTGTTTTGAAATAAAAATTAATGTTTGAATTTGGTAATAAGG-TGGTAATGA
*
864980 ATGACAAGTGGTAT--TAAAAATGTTAGAAATTTTAAATGATAATTTGATCTCTATGTTTTGATT
194 ATGACAAGTGATATGCT-AAAATGTTAGAAATTTTAAATGATAATTTGATCTCTATGTTTTGATT
865043 AATTAAACTCTAGGTATAATTAGCATGTCATAGAATCTAGTAC-AGTTACTGGTATTCCTGGTGA
258 AATTAAACTCTAGGTATAATTAGCATGTCATAGAATCTAGTACGAGTTACTGGTATTCC--GTGA
* * * * * * * * * *
865107 GCAGTGTTTTCAACACCGGAC-CGACCG-TCGGTTCAAGGTTCAACGGAACTGTTGCCTAGTCCG
321 GCAGTGTTTTGAAAATCAGACTGGATCGACCGGTTCAA-GTT--AGGGAACCGTTGTCTAGTCCG
* *
865170 GTTCAATCTATACTGGTTGAACCGCTACTAGTGAA-CGATCC-GAACCGCTGAA-CGTTCGAACC
383 GTTTAATCTACACTGGTTGAACCGCTACTAGTGAACCGA-CCGGAACCGCTGAACCGTTCGAACC
*
865232 GGACCGGCTGAAAACC-GG-------G--AAAACCCGCCAA-TTTGTTTTTTTTTAAAAAAA-TA
447 GGACCGGCTGAAAACCGGGAAAAATCGAAAAAACCCGCCAATTTTGTTTTCTTTTAAAAAAATTA
865285 AACCAAACGACGTCGTTTGTTAAACGAGCCAAGTCGAACTCGAGTATTGTTGAGCTCAACTCGAA
512 AACCAAACGACGTCGTTTGTTAAACGAGCCAAGTCGAACTCGAGTATTGTTGAGCTCAACTCGAA
*
865350 CTTGAAAACTTTAAAAGTAAGCTCAACTCGACTCAAACTCACGAGCTAAAAATTATCAAGTTCAA
577 CTTGAAAACTTTAAAAGTAAGCTCAACTCAACTCAAACTCACGAGCTAAAAATTATCAAGTTCAA
865415 CTCAAACTCG-AATATAAATTGAAACTTGAACTC-AAAAGGCTTGAACTCAAAAAAAATTTAGAA
642 CTCAAACTCGAAATAT-AATTGAAACTTGAACTCAAAAAGGCTTGAACTCAAAAAAAATTTAGAA
*
865478 GCTCGATTGAAGCCTAAAATTCGAGCTTAATTGAAAGTGAAAAAATAGTTCACTCAATGCTCACC
706 GCTCGATTGAAGCCTAAAATTTGAGCTTAATTG-AAGTGAAAAAATAGTTCACTCAATGCTCACC
* * * * *
865543 AAAAAGGCTATATGATTTTGAATGTCAAATTAACTCTATTATTTATAGAAATTAGTT-TGATG-T
770 -AAAAGGCTCTATGATTTTGAATGACAAATTACCTCTATTATTTATAGAAGTTAGTTGTAATGCT
865606 CTTCTATGTTTCTTAACCATGTGGGATTGTTTTGTT
834 CTTCTATGTTTCTTAACCATGTGGGATTGTTTT-TT
865642 CTCATATTAGACAAGTGTAGTCGTAATTATATTCATTTTCTTATGTATTGTTTTTGATACTGTGA
1 CTCATATTAGACAAG-GTAGTCGTAATTATATTCATTTTCTTATGTATTG-TTTTGATACTGTGA
865707 ATGTAAGTAAA-TCCTTAAATGTCAAATTCATCTTTAAATCTAACTTTCCTCTATTATGTATATT
64 ATGTAAGTAAATTCCTTAAATGTCAAATTCATCTTTAAATCTAACTTTCCTCTATTATGTATATT
*
865771 GATGAAGTATGCATGTGTTTTGAAATAAAAATTAATGTTTGAATTTGGTAATAATGTTGGTAATG
129 GATGAAGTATGCATGTGTTTTGAAATAAAAATTAATGTTTGAATTTGGTAATAA-GGTGGTAATG
865836 AAATGACAAGTGATATGCTAAAATGTTAGAAATTTTAAATG---A--T-A----TATGTTTTGAT
193 -AATGACAAGTGATATGCTAAAATGTTAGAAATTTTAAATGATAATTTGATCTCTATGTTTTGAT
865891 TAATTAAACTCTAGGTATAATTAGCATGTCATAGAATCTAGTACGAGTTACTGGTATTCCTGGTG
257 TAATTAAACTCTAGGTATAATTAGCATGTCATAGAATCTAGTACGAGTTACTGGTATTCC--GTG
865956 AGCAGTGTTTTGAAAATCAGACTGGATCGACCGGTTCAACCGGTTCAACCGGTTCAATCGGGAAC
320 AGCAGTGTTTTGAAAATCAGACTGGAT----C-G----ACCGGTTCAA---GTT--A--GGGAAC
*
866021 CGTTGTCTAGTCCGGTTTAATCTACACTGGTTGAACCGTTACTAGTGAACCGACCGGAACCGCTG
369 CGTTGTCTAGTCCGGTTTAATCTACACTGGTTGAACCGCTACTAGTGAACCGACCGGAACCGCTG
*
866086 AACCGTTCGAACCGGACCGGCTGAAAACTGGGAAAAATCGAAAAAACCCGCCAATTTTGTTTTCT
434 AACCGTTCGAACCGGACCGGCTGAAAACCGGGAAAAATCGAAAAAACCCGCCAATTTTGTTTTCT
866151 TTTAAAAAAATTAAACCAAACGACGTCGTTTGTTAAACGAGCCAAGTCGAACTCGAGTATTGTTG
499 TTTAAAAAAATTAAACCAAACGACGTCGTTTGTTAAACGAGCCAAGTCGAACTCGAGTATTGTTG
866216 AGCTCAACTCGAACTTGAAAACTTTAAAAGTAAGCTCAACTCAACTCAAACTCACGAGCTAAAAA
564 AGCTCAACTCGAACTTGAAAACTTTAAAAGTAAGCTCAACTCAACTCAAACTCACGAGCTAAAAA
866281 TTATCAAGTTCAACTCAAACTCGAAATATATATTGAAACTTGAACTCAAAAAGGCTTGAACTCAA
629 TTATCAAGTTCAACTCAAACTCGAAATATA-ATTGAAACTTGAACTCAAAAAGGCTTGAACTCAA
*
866346 AAAAAATTTAAAAGCTCGATTGAAGCCTAAAATTTGAGCTTAATTGAAGTGAAAAAATAGTTCAC
693 AAAAAATTTAGAAGCTCGATTGAAGCCTAAAATTTGAGCTTAATTGAAGTGAAAAAATAGTTCAC
866411 TCAATGCTCACCAAAAGGCTCTATGATTTTGAATGACAAATTACCTCTATTATTTATAGAAGTTA
758 TCAATGCTCACCAAAAGGCTCTATGATTTTGAATGACAAATTACCTCTATTATTTATAGAAGTTA
866476 GTTGTAATGCTCTTCTATGTTTCTTAACCATGTGGGATTGTTTTATT
823 GTTGTAATGCTCTTCTATGTTTCTTAACCATGTGGGATTGTTTT-TT
866523 CTCATATTAGACAA-GTAGTCGTAATTATATTCATTTTCTTATGTATTGTTTTGATACTGTGAAT
1 CTCATATTAGACAAGGTAGTCGTAATTATATTCATTTTCTTATGTATTGTTTTGATACTGTGAAT
866587 GTAAGTAAATTCCTTAAATGTCAAATTCATCTTTAAATCTAACTTTCCTCTATTATGTATATTGA
66 GTAAGTAAATTCCTTAAATGTCAAATTCATCTTTAAATCTAACTTTCCTCTATTATGTATATTGA
866652 TGAAGTATGCATGTGTTTTGAAATAAAAATTAATGTTTTGAA-TTGGTAATAA-G-GGTAATGAA
131 TGAAGTATGCATGTGTTTTGAAATAAAAATTAATG-TTTGAATTTGGTAATAAGGTGGTAATGAA
866714 TGACAAGTGATATGCTAAAATGTTAGAAATTTTAAATGATAATTTTGATCTCTATGTTTTTGATT
195 TGACAAGTGATATGCTAAAATGTTAGAAATTTTAAATGATAA-TTTGATCTCTATG-TTTTGATT
*
866779 AATTAAACTCTAGGTATAATTAGCATGTCATAGAATCTAGTACGAGTTACTAGTATTCC-TGAGC
258 AATTAAACTCTAGGTATAATTAGCATGTCATAGAATCTAGTACGAGTTACTGGTATTCCGTGAGC
866843 AGTGTTTTGAAAATCAGACTGGATCGACCGGTTCAA-TT-GGGAACCGTTGTCTAGTCCGGTTTA
323 AGTGTTTTGAAAATCAGACTGGATCGACCGGTTCAAGTTAGGGAACCGTTGTCTAGTCCGGTTTA
866906 ATCTACACTGGTTGAACCGCTACTAGTGAACCGACCGGAACCGCTGAACCGTTCGAACCGGACCG
388 ATCTACACTGGTTGAACCGCTACTAGTGAACCGACCGGAACCGCTGAACCGTTCGAACCGGACCG
866971 GCTGAAAACCGGGAAAAATCGAAAAAACCCGCCAATTTTGTTTTCTTTTAAAAAAATTAAACCAA
453 GCTGAAAACCGGGAAAAATCGAAAAAACCCGCCAATTTTGTTTTCTTTTAAAAAAATTAAACCAA
*
867036 ACGACGTCGTTTGTTAAACGAGCCAAGTCGAACTCGAGTATTGTTGAGCTTAACTCGAACTTGAA
518 ACGACGTCGTTTGTTAAACGAGCCAAGTCGAACTCGAGTATTGTTGAGCTCAACTCGAACTTGAA
867101 AACTTTAAAAGTAAGCTCAACTCAACTCAAACTCACGAGCTAAAAATTATCAAGTTCAACTCAAA
583 AACTTTAAAAGTAAGCTCAACTCAACTCAAACTCACGAGCTAAAAATTATCAAGTTCAACTCAAA
*
867166 TTCGAAATATAATTGAAACTTGAACTCAAAAAGGCTTGAACTC-AAAAAAATTTAGAAGCTCGAT
648 CTCGAAATATAATTGAAACTTGAACTCAAAAAGGCTTGAACTCAAAAAAAATTTAGAAGCTCGAT
** *
867230 TGAAGCCTAAAATTTGAGCTTAATTGAAGTGAAAAAATAGTTCACTCAATGCTCACTGAAAGACT
713 TGAAGCCTAAAATTTGAGCTTAATTGAAGTGAAAAAATAGTTCACTCAATGCTCACCAAAAGGCT
* *
867295 CTATGATTTTAAATGCCAAATTACCTCTATTATTTATAGAAGTTAGTTGTAATGCTCTTCTATGT
778 CTATGATTTTGAATGACAAATTACCTCTATTATTTATAGAAGTTAGTTGTAATGCTCTTCTATGT
* *
867360 TTCTTAGCCATATGGGA-TGTTTTTT
843 TTCTTAACCATGTGGGATTGTTTTTT
867385 CTCATATT
1 CTCATATT
867393 TTTACTCTTT
Statistics
Matches: 1648, Mismatches: 43, Indels: 110
0.92 0.02 0.06
Matches are distributed among these distances:
849 55 0.03
850 38 0.02
851 2 0.00
852 25 0.02
853 2 0.00
854 27 0.02
855 52 0.03
856 36 0.02
857 45 0.03
858 15 0.01
859 22 0.01
860 1 0.00
861 8 0.00
862 10 0.01
863 13 0.01
864 160 0.10
865 83 0.05
866 306 0.19
867 25 0.02
868 2 0.00
871 2 0.00
875 51 0.03
876 7 0.00
877 12 0.01
878 45 0.03
879 329 0.20
880 63 0.04
881 112 0.07
882 1 0.00
884 29 0.02
886 4 0.00
887 66 0.04
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (868 bp):
CTCATATTAGACAAGGTAGTCGTAATTATATTCATTTTCTTATGTATTGTTTTGATACTGTGAAT
GTAAGTAAATTCCTTAAATGTCAAATTCATCTTTAAATCTAACTTTCCTCTATTATGTATATTGA
TGAAGTATGCATGTGTTTTGAAATAAAAATTAATGTTTGAATTTGGTAATAAGGTGGTAATGAAT
GACAAGTGATATGCTAAAATGTTAGAAATTTTAAATGATAATTTGATCTCTATGTTTTGATTAAT
TAAACTCTAGGTATAATTAGCATGTCATAGAATCTAGTACGAGTTACTGGTATTCCGTGAGCAGT
GTTTTGAAAATCAGACTGGATCGACCGGTTCAAGTTAGGGAACCGTTGTCTAGTCCGGTTTAATC
TACACTGGTTGAACCGCTACTAGTGAACCGACCGGAACCGCTGAACCGTTCGAACCGGACCGGCT
GAAAACCGGGAAAAATCGAAAAAACCCGCCAATTTTGTTTTCTTTTAAAAAAATTAAACCAAACG
ACGTCGTTTGTTAAACGAGCCAAGTCGAACTCGAGTATTGTTGAGCTCAACTCGAACTTGAAAAC
TTTAAAAGTAAGCTCAACTCAACTCAAACTCACGAGCTAAAAATTATCAAGTTCAACTCAAACTC
GAAATATAATTGAAACTTGAACTCAAAAAGGCTTGAACTCAAAAAAAATTTAGAAGCTCGATTGA
AGCCTAAAATTTGAGCTTAATTGAAGTGAAAAAATAGTTCACTCAATGCTCACCAAAAGGCTCTA
TGATTTTGAATGACAAATTACCTCTATTATTTATAGAAGTTAGTTGTAATGCTCTTCTATGTTTC
TTAACCATGTGGGATTGTTTTTT
Found at i:869144 original size:14 final size:14
Alignment explanation
Indices: 869125--869152 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
869115 GACTATGAAC
869125 ATTTTCCTTATTTT
1 ATTTTCCTTATTTT
869139 ATTTTCCTTATTTT
1 ATTTTCCTTATTTT
869153 CTCGTAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
ATTTTCCTTATTTT
Found at i:869301 original size:25 final size:25
Alignment explanation
Indices: 869267--869321 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
869257 AAATCTTTCT
*
869267 TTTTCTTGAAGAGCAAGGGAAACTA
1 TTTTCTTGAAGAGCAAGGAAAACTA
*
869292 TTTTCTTGAAGAGCAAGGAAAACTT
1 TTTTCTTGAAGAGCAAGGAAAACTA
869317 TTTTC
1 TTTTC
869322 CTTTTTTTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.35
Consensus pattern (25 bp):
TTTTCTTGAAGAGCAAGGAAAACTA
Found at i:869886 original size:31 final size:30
Alignment explanation
Indices: 869848--869916 Score: 120
Period size: 31 Copynumber: 2.3 Consensus size: 30
869838 TAAAGGAAAA
869848 TAGTCCCTAATATTATTGATCCGTTCAAGTT
1 TAGTCCCTAATATTATTGATCCGTTCAA-TT
869879 TAGTCCCTAATATTATTGATCCGTTCAATT
1 TAGTCCCTAATATTATTGATCCGTTCAATT
*
869909 TCGTCCCT
1 TAGTCCCT
869917 CAATCGTTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
30 9 0.24
31 28 0.76
ACGTcount: A:0.23, C:0.23, G:0.12, T:0.42
Consensus pattern (30 bp):
TAGTCCCTAATATTATTGATCCGTTCAATT
Found at i:889818 original size:21 final size:21
Alignment explanation
Indices: 889789--889834 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
889779 CTTCTGACAA
*
889789 CAACTTTAAGTTATACATAAG
1 CAACCTTAAGTTATACATAAG
* *
889810 CAACCTTAAGTTATATATTAG
1 CAACCTTAAGTTATACATAAG
889831 CAAC
1 CAAC
889835 AAACATGTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (21 bp):
CAACCTTAAGTTATACATAAG
Found at i:890020 original size:24 final size:25
Alignment explanation
Indices: 889961--890013 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
889951 TAAATGACAA
889961 ACACATAATATTTTTGTTCTTTGGC
1 ACACATAATATTTTTGTTCTTTGGC
*
889986 ACACATAATATTTTTGTTTTTTGGC
1 ACACATAATATTTTTGTTCTTTGGC
890011 ACA
1 ACA
890014 AGTATATGAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.26, C:0.15, G:0.11, T:0.47
Consensus pattern (25 bp):
ACACATAATATTTTTGTTCTTTGGC
Found at i:890387 original size:21 final size:22
Alignment explanation
Indices: 890338--890387 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
890328 ATTAAAAGAG
*
890338 ATATTATATAAATTATATCTAA
1 ATATTATAAAAATTATATCTAA
890360 ATA-TATAAAAATTA-AT-TATA
1 ATATTATAAAAATTATATCTA-A
890380 ATATTATA
1 ATATTATA
890388 TCCGGTTGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.08
20 6 0.24
21 14 0.56
22 3 0.12
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
ATATTATAAAAATTATATCTAA
Found at i:890668 original size:65 final size:65
Alignment explanation
Indices: 890564--890694 Score: 196
Period size: 65 Copynumber: 2.0 Consensus size: 65
890554 ATTTTCCTTT
890564 TAGACTTTTGGATAAAATTCTAGTATTACTTATTAATTTTAAATTAATTGTAGAAAGATTAAAAA
1 TAGACTTTTGGATAAAATTCTAGTATTACTTATTAATTTTAAATTAATTGTAGAAAGATTAAAAA
* *
890629 TAGAC-TTTGGATAAAATTTTTAGTACTT-C-TATTTAATTTTGAATTAATTGTAGAAAGATTAA
1 TAGACTTTTGGATAAAA-TTCTAGTA-TTACTTA-TTAATTTTAAATTAATTGTAGAAAGATTAA
890691 AAA
63 AAA
890694 T
1 T
890695 TAATAAGAGA
Statistics
Matches: 61, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
64 13 0.21
65 46 0.75
66 2 0.03
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (65 bp):
TAGACTTTTGGATAAAATTCTAGTATTACTTATTAATTTTAAATTAATTGTAGAAAGATTAAAAA
Found at i:892680 original size:14 final size:11
Alignment explanation
Indices: 892635--892709 Score: 57
Period size: 11 Copynumber: 6.7 Consensus size: 11
892625 TTTACTAATG
892635 AATAATATTATT
1 AATAATATT-TT
*
892647 TAT-ATATTTT
1 AATAATATTTT
892657 AATAATATTTT
1 AATAATATTTT
*
892668 AATAAAGATATTT
1 AAT-AATAT-TTT
**
892681 AA-AATATACT
1 AATAATATTTT
892691 AATTAATATTTT
1 AA-TAATATTTT
892703 AA-AATAT
1 AATAATAT
892710 AATATAACAC
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
10 12 0.24
11 19 0.38
12 14 0.28
13 5 0.10
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (11 bp):
AATAATATTTT
Found at i:892693 original size:23 final size:22
Alignment explanation
Indices: 892652--892710 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
892642 TTATTTATAT
**
892652 ATTTTAATAATATTTTAATAAAG
1 ATTTTAA-AATATACTAATAAAG
* *
892675 ATATTTAAAATATACTAATTAAT
1 AT-TTTAAAATATACTAATAAAG
892698 ATTTTAAAATATA
1 ATTTTAAAATATA
892711 ATATAACACT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 11 0.35
23 15 0.48
24 5 0.16
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (22 bp):
ATTTTAAAATATACTAATAAAG
Found at i:892816 original size:29 final size:32
Alignment explanation
Indices: 892750--892819 Score: 85
Period size: 29 Copynumber: 2.3 Consensus size: 32
892740 AATATAATTT
*
892750 ATAATA-TTTTATTTCACTAAAATATACAAAA
1 ATAATATTTTTATTTCAATAAAATATACAAAA
*
892781 AGTAATATTTTTA-TT-AATAAAAT-TATAAAA
1 A-TAATATTTTTATTTCAATAAAATATACAAAA
892811 ATAATATTT
1 ATAATATTT
892820 AATAATAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 8 0.23
30 7 0.20
31 8 0.23
32 7 0.20
33 5 0.14
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (32 bp):
ATAATATTTTTATTTCAATAAAATATACAAAA
Found at i:892828 original size:27 final size:30
Alignment explanation
Indices: 892767--892828 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 30
892757 TTTATTTCAC
*
892767 TAAAATATACAAAAAGTAATATTTTTATTAA
1 TAAAATATACAAAAAGTAATA-TTTTAATAA
*
892798 TAAAAT-TATAAAAA-TAATA-TTTAATAA
1 TAAAATATACAAAAAGTAATATTTTAATAA
892825 TAAA
1 TAAA
892829 TAAATAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 11 0.38
29 5 0.17
30 7 0.24
31 6 0.21
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (30 bp):
TAAAATATACAAAAAGTAATATTTTAATAA
Found at i:893045 original size:14 final size:14
Alignment explanation
Indices: 893012--893051 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
893002 AATCTAATTT
* *
893012 ATTTTACGGAAAAT
1 ATTTTCCGGAAAAC
893026 ATTTTCCGGAAAAC
1 ATTTTCCGGAAAAC
*
893040 ATTTTCCAGAAA
1 ATTTTCCGGAAA
893052 TGTAATTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (14 bp):
ATTTTCCGGAAAAC
Found at i:893078 original size:20 final size:20
Alignment explanation
Indices: 893039--893079 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
893029 TTCCGGAAAA
**
893039 CATTTTCCAGAAATGTAATT
1 CATTTTCCAGAAATCAAATT
*
893059 CATTTTCCAGAATTCAAATT
1 CATTTTCCAGAAATCAAATT
893079 C
1 C
893080 CAGTAATTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.34, C:0.20, G:0.07, T:0.39
Consensus pattern (20 bp):
CATTTTCCAGAAATCAAATT
Found at i:893095 original size:15 final size:15
Alignment explanation
Indices: 893053--893098 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
893043 TTCCAGAAAT
893053 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
**
893068 G-AATTCAAATTCCA
1 GTAATTCATTTTCCA
893082 GTAATTCATTTTCCA
1 GTAATTCATTTTCCA
893097 GT
1 GT
893099 TCCAATAATT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
14 12 0.46
15 14 0.54
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.41
Consensus pattern (15 bp):
GTAATTCATTTTCCA
Found at i:896504 original size:17 final size:16
Alignment explanation
Indices: 896473--896506 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
896463 CACGTGAGGA
896473 TTATTTTCTTCTTATT
1 TTATTTTCTTCTTATT
*
896489 TTATTTATCTTTTTATT
1 TTATTT-TCTTCTTATT
896506 T
1 T
896507 ACTTTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTCTTCTTATT
Found at i:897424 original size:22 final size:21
Alignment explanation
Indices: 897399--897439 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
897389 CAGATTGTCC
897399 AGAGGG-AACCGATTCTCCCCCA
1 AGAGGGTAA-CGATTC-CCCCCA
897421 AGAGGGTAACGATTCCCCC
1 AGAGGGTAACGATTCCCCC
897440 TGAATGGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 12 0.67
23 2 0.11
ACGTcount: A:0.27, C:0.34, G:0.24, T:0.15
Consensus pattern (21 bp):
AGAGGGTAACGATTCCCCCCA
Found at i:902920 original size:21 final size:21
Alignment explanation
Indices: 902876--902935 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
902866 GTGCAGAGGA
902876 AACCGATTCCCCCTTTGAATGGG
1 AACCGATTCCCCC--TGAATGGG
*
902899 AACCGATTCCCCCTGTATGGG
1 AACCGATTCCCCCTGAATGGG
* *
902920 AATCGATACCCCCTGA
1 AACCGATTCCCCCTGA
902936 GGGTTCTGGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 20 0.61
23 13 0.39
ACGTcount: A:0.23, C:0.33, G:0.20, T:0.23
Consensus pattern (21 bp):
AACCGATTCCCCCTGAATGGG
Found at i:905508 original size:21 final size:21
Alignment explanation
Indices: 905484--905539 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
905474 TTTACACTTA
*
905484 GGGAATCGAATCCCTATGAGG
1 GGGAACCGAATCCCTATGAGG
*
905505 GGGAACCGATTCCCTATGAGG
1 GGGAACCGAATCCCTATGAGG
* *
905526 GGGTACCGATTCCC
1 GGGAACCGAATCCC
905540 CCACGCCCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.23, C:0.25, G:0.32, T:0.20
Consensus pattern (21 bp):
GGGAACCGAATCCCTATGAGG
Found at i:909440 original size:3 final size:3
Alignment explanation
Indices: 909432--909465 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
909422 GACCGAAACG
909432 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
909466 TTGGTTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:917980 original size:136 final size:130
Alignment explanation
Indices: 917833--918107 Score: 408
Period size: 136 Copynumber: 2.1 Consensus size: 130
917823 TATGTATATA
*
917833 TAAAAAATGTAAAATAATAGCGTATAAAGTAGAATAAATAAAATTAATAAAAACATATAATAATA
1 TAAAAAATGTAAAATAATAGCGTATAAAGTAAAATAAATAAAATTAAT-AAAACATATAAT-AT-
*
917898 TCAATACCATATATATATGATAGCTAAATATGAGAGGGAGGAAAAAAATATATAT-ATAATAATG
63 T-AATACCATATATATAT-A-A-CTAAATATGAGAGGGAGGAAAAAAATATATATAATAATAATA
*
917962 GAAAAAT
124 GAAAAAC
*
917969 TAAAAAATGTAAAATAATAGCGTATAAAGTAAAATAAATAAAGTTAATAAAACATATAATATTAA
1 TAAAAAATGTAAAATAATAGCGTATAAAGTAAAATAAATAAAATTAATAAAACATATAATATTAA
* * *
918034 TACCATATGTATATAACTAAATATGAGAGGGAGGAAAAAAATCTATATAATAGTAATAGAAAAAC
66 TACCATATATATATAACTAAATATGAGAGGGAGGAAAAAAATATATATAATAATAATAGAAAAAC
*
918099 TAAATAATG
1 TAAAAAATG
918108 AAGATAAATA
Statistics
Matches: 130, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
129 31 0.24
130 22 0.17
131 1 0.01
132 15 0.12
133 1 0.01
134 2 0.02
135 12 0.09
136 46 0.35
ACGTcount: A:0.57, C:0.05, G:0.12, T:0.27
Consensus pattern (130 bp):
TAAAAAATGTAAAATAATAGCGTATAAAGTAAAATAAATAAAATTAATAAAACATATAATATTAA
TACCATATATATATAACTAAATATGAGAGGGAGGAAAAAAATATATATAATAATAATAGAAAAAC
Found at i:918147 original size:129 final size:133
Alignment explanation
Indices: 917833--918144 Score: 351
Period size: 136 Copynumber: 2.4 Consensus size: 133
917823 TATGTATATA
* *
917833 TAAAAAATGTAAAATAATAGCGTATAAAGTAGAATAAATAAA-ATTAATAAAAACATATAATAAT
1 TAAAAAATGTAAAATAATA--GTATAAAGTAAAAAAAATAAAGA-TAAT-AAAACATATAATAAT
*
917897 ATCAATACCATATATATATGATAGCTAAATATGAGAGGGAGGAAAAAAATATATATATAATAATG
62 ATCAATACCATATATATATGATAGCTAAATATGAGAGGGAGGAAAAAAATATATATATAATAATA
*
917962 GAAAAAT
127 GAAAAAC
* *
917969 TAAAAAATGTAAAATAATAGCGTATAAAGTAAAATAAATAAAGTTAATAAAACATATAAT-AT-T
1 TAAAAAATGTAAAATAATA--GTATAAAGTAAAAAAAATAAAGATAATAAAACATATAATAATAT
* * *
918032 -AATACCATATGTATAT-A-A-CTAAATATGAGAGGGAGGAAAAAAATCTATATAATAGTAATAG
64 CAATACCATATATATATGATAGCTAAATATGAGAGGGAGGAAAAAAATATATAT-ATAATAATAG
918093 AAAAAC
128 AAAAAC
* *
918099 TAAATAATG-AAGATAA-A-TATAATAAG-AAAAAAAAGTAAAGA-AATAA
1 TAAAAAATGTAAAATAATAGTAT-A-AAGTAAAAAAAA-TAAAGATAATAA
918145 TAAGATAAAA
Statistics
Matches: 160, Mismatches: 11, Indels: 20
0.84 0.06 0.10
Matches are distributed among these distances:
125 3 0.02
126 13 0.08
127 8 0.05
128 1 0.01
129 37 0.23
130 22 0.14
131 1 0.01
132 15 0.09
133 1 0.01
134 2 0.01
135 12 0.08
136 45 0.28
ACGTcount: A:0.59, C:0.04, G:0.12, T:0.25
Consensus pattern (133 bp):
TAAAAAATGTAAAATAATAGTATAAAGTAAAAAAAATAAAGATAATAAAACATATAATAATATCA
ATACCATATATATATGATAGCTAAATATGAGAGGGAGGAAAAAAATATATATATAATAATAGAAA
AAC
Found at i:918180 original size:2 final size:2
Alignment explanation
Indices: 918175--918210 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
918165 ATACACACAC
918175 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
918211 ACATATAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:918216 original size:12 final size:13
Alignment explanation
Indices: 918173--918218 Score: 51
Period size: 14 Copynumber: 3.6 Consensus size: 13
918163 ATATACACAC
918173 ACATAT-ATATAT
1 ACATATAATATAT
*
918185 ATATATATATATAT
1 ACATATA-ATATAT
*
918199 ATATATAATATA-
1 ACATATAATATAT
918211 ACATATAA
1 ACATATAA
918219 GTAAAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 12 0.40
13 5 0.17
14 13 0.43
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.41
Consensus pattern (13 bp):
ACATATAATATAT
Found at i:919990 original size:105 final size:105
Alignment explanation
Indices: 919799--920574 Score: 1318
Period size: 105 Copynumber: 7.4 Consensus size: 105
919789 GTATTGTTCC
* ** * * * *
919799 GAGTCCAATATCCTCCGCCGTGAAGTTGAAATTGGTTCTGGAACTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAA-TGTTTGTTGACAA
* * *
919864 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTG
65 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
919905 TAGTCCAATATCCTTCATTGTGAAGTTGAAATTGGCTCTGAAATTGAGAGATGTTTGTTGGCAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
919970 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
920010 GAGTACAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATTTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
*
920075 CAGCGGTCCCTTCGTCGTGAAGTTGAACATGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * *
920115 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATTTGAGAAATGTTTGTTGAAAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
920180 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
920220 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAATTTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
920285 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
920325 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
920390 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
**
920430 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGGGATTGAGAAATGTTTGTTGACAAC
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
920495 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
920535 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
1 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTG
920575 GGTAAAACCT
Statistics
Matches: 640, Mismatches: 30, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
105 599 0.94
106 41 0.06
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.34
Consensus pattern (105 bp):
GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAAC
CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:932359 original size:135 final size:137
Alignment explanation
Indices: 932116--932397 Score: 442
Period size: 135 Copynumber: 2.1 Consensus size: 137
932106 TATGTATATA
*
932116 TAAAAAATGTAAAATAATAGCGTATAAAGTAGAATAAATAAAATTAATAAAAACATATAATAATA
1 TAAAAAATGTAAAATAATAGCGTATAAAGTAAAATAAATAAAATTAATAAAAACATATAATAATA
* * *
932181 TCAATACCATATATATATGATAGCTAAATATGAGAGGGAGG-AAAAAATATATATAATAATAATG
66 TCAATACCATATATATATAATAACTAAATATGAGAGGGAGGAAAAAAATATATATAATAATAATA
*
932245 GAAAAAT
131 GAAAAAC
*
932252 TAAAAAATGTAAAATAATAGCGTATAAAGTAAAATAAATAAAGTTAAT-AAAACATATAATAATA
1 TAAAAAATGTAAAATAATAGCGTATAAAGTAAAATAAATAAAATTAATAAAAACATATAATAATA
* * * *
932316 TTAATACCATATGTATATAATAACTAAATATGAGAGGGAGGAAAAAAAATCTATATAATAGTAAT
66 TCAATACCATATATATATAATAACTAAATATGAGAGGGAGG-AAAAAAATATATATAATAATAAT
932381 AGAAAAAC
130 AGAAAAAC
*
932389 TAAATAATG
1 TAAAAAATG
932398 AAGATAAATA
Statistics
Matches: 133, Mismatches: 11, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
135 53 0.40
136 46 0.35
137 34 0.26
ACGTcount: A:0.57, C:0.05, G:0.11, T:0.27
Consensus pattern (137 bp):
TAAAAAATGTAAAATAATAGCGTATAAAGTAAAATAAATAAAATTAATAAAAACATATAATAATA
TCAATACCATATATATATAATAACTAAATATGAGAGGGAGGAAAAAAATATATATAATAATAATA
GAAAAAC
Found at i:932460 original size:2 final size:2
Alignment explanation
Indices: 932453--932479 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
932443 AATACAAAAT
932453 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
932480 AATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:934179 original size:2 final size:2
Alignment explanation
Indices: 934172--934200 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
934162 GTACACAAAT
934172 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
934201 TATTACATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:935342 original size:14 final size:14
Alignment explanation
Indices: 935323--935349 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
935313 GATTGATAAT
935323 TTTAAAAATTAACC
1 TTTAAAAATTAACC
935337 TTTAAAAATTAAC
1 TTTAAAAATTAAC
935350 AATATATGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (14 bp):
TTTAAAAATTAACC
Found at i:936016 original size:2 final size:2
Alignment explanation
Indices: 936009--936100 Score: 184
Period size: 2 Copynumber: 46.0 Consensus size: 2
935999 TCCTCCATTA
936009 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
936051 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
936093 AT AT AT AT
1 AT AT AT AT
936101 CAATAATTTA
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 90 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:939111 original size:20 final size:21
Alignment explanation
Indices: 939065--939116 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 21
939055 TAGTAAGTAA
* * *
939065 ATTTATTAATTTAATTATCAT
1 ATTTAATAATTTAATTATAAG
*
939086 AATTAATAATTT-ATTATAAG
1 ATTTAATAATTTAATTATAAG
*
939106 ATTTAAAAATT
1 ATTTAATAATT
939117 AATCATATTA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
ATTTAATAATTTAATTATAAG
Found at i:939173 original size:19 final size:19
Alignment explanation
Indices: 939149--939190 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
939139 TATTATAAAC
939149 TCAAAATCTCACAATTTCA
1 TCAAAATCTCACAATTTCA
* *
939168 TCAAAATCTTATAATTTCA
1 TCAAAATCTCACAATTTCA
939187 TCAA
1 TCAA
939191 TGGTAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (19 bp):
TCAAAATCTCACAATTTCA
Found at i:948155 original size:23 final size:22
Alignment explanation
Indices: 948123--948165 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
948113 AGTCAAGGGT
948123 TACATAGGTCATTCGGGACATA
1 TACATAGGTCATTCGGGACATA
*
948145 TACATGAGGTCCTTCGGGACA
1 TACAT-AGGTCATTCGGGACA
948166 AATTTCACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (22 bp):
TACATAGGTCATTCGGGACATA
Found at i:949255 original size:30 final size:30
Alignment explanation
Indices: 949203--949266 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
949193 TTTATTTTTA
*
949203 AAAAAATTAAATAAACCTTCAAATTCGACC
1 AAAAAATTAAATAAACCTTCAAACTCGACC
* * *
949233 AAAAAATTAATTAAGTCC-TCAAACTCGATC
1 AAAAAATTAAATAA-ACCTTCAAACTCGACC
949263 AAAA
1 AAAA
949267 TTTTTTATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 27 0.93
31 2 0.07
ACGTcount: A:0.53, C:0.19, G:0.05, T:0.23
Consensus pattern (30 bp):
AAAAAATTAAATAAACCTTCAAACTCGACC
Found at i:949750 original size:39 final size:39
Alignment explanation
Indices: 949706--949782 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
949696 GGTTAGATTC
*
949706 AACTTAAAATGTTATATTCTTT-ATAACATTTGCAGTTGT
1 AACTTAAAATGTTACATT-TTTCATAACATTTGCAGTTGT
* *
949745 AACTTAAAATGTTACATTTTTCATAATATTTTCAGTTG
1 AACTTAAAATGTTACATTTTTCATAACATTTGCAGTTG
949783 CCAAACGATT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 3 0.09
39 31 0.91
ACGTcount: A:0.34, C:0.10, G:0.09, T:0.47
Consensus pattern (39 bp):
AACTTAAAATGTTACATTTTTCATAACATTTGCAGTTGT
Found at i:951601 original size:64 final size:65
Alignment explanation
Indices: 951477--951632 Score: 210
Period size: 64 Copynumber: 2.4 Consensus size: 65
951467 TACACTAGGG
* * * * *
951477 GTGCATCGATGCATAAAATACATTCGATGTTTCAAACAAGTCTGGAGTGCATCGATGCATG-GTC
1 GTGCATCGATACACAAAATGCATTCGATGTTTCAAACAAGTCAGGAGTGCATCGATGCATGCCT-
951541 T
65 T
* *
951542 GTGCATCGGTACACAAAATGCATTCGATG-TTCAAA-ATATTCAGGAGTGCATCGATGCATGCCT
1 GTGCATCGATACACAAAATGCATTCGATGTTTCAAACA-AGTCAGGAGTGCATCGATGCATGCCT
951605 T
65 T
951606 GTGCATCGATACACAAAATGCATTCGA
1 GTGCATCGATACACAAAATGCATTCGA
951633 AATGGGTGTG
Statistics
Matches: 81, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
63 1 0.01
64 54 0.67
65 26 0.32
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (65 bp):
GTGCATCGATACACAAAATGCATTCGATGTTTCAAACAAGTCAGGAGTGCATCGATGCATGCCTT
Found at i:952271 original size:13 final size:13
Alignment explanation
Indices: 952255--952297 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
952245 TATTTTAATA
952255 ATTAAATATTTAT
1 ATTAAATATTTAT
* *
952268 ATTAATTATTTTT
1 ATTAAATATTTAT
952281 ATATAAAGTATTTAT
1 AT-TAAA-TATTTAT
952296 AT
1 AT
952298 GCATTTTTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 13 0.54
14 3 0.12
15 8 0.33
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (13 bp):
ATTAAATATTTAT
Found at i:952327 original size:25 final size:25
Alignment explanation
Indices: 952275--952329 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
952265 TATATTAATT
*
952275 ATTTTTATATAAAGTATTTATATGC
1 ATTTTTATATAAAGTATCTATATGC
* * *
952300 ATTTTTATATAAATTATCTCTATTC
1 ATTTTTATATAAAGTATCTATATGC
952325 ATTTT
1 ATTTT
952330 AAATATGCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (25 bp):
ATTTTTATATAAAGTATCTATATGC
Found at i:957411 original size:12 final size:12
Alignment explanation
Indices: 957390--957424 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
957380 AGTTTACAAA
957390 ATTAAAAAAAAT
1 ATTAAAAAAAAT
*
957402 ATTAATAAAAAT
1 ATTAAAAAAAAT
957414 A-TAAAAAAAAT
1 ATTAAAAAAAAT
957425 CTAAATTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 9 0.43
12 12 0.57
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (12 bp):
ATTAAAAAAAAT
Found at i:957422 original size:11 final size:11
Alignment explanation
Indices: 957387--957429 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
957377 TAAAGTTTAC
957387 AAAAT-TAAAA
1 AAAATATAAAA
*
957397 AAAATATTAATA
1 AAAATA-TAAAA
957409 AAAATATAAAA
1 AAAATATAAAA
*
957420 AAAATCTAAA
1 AAAATATAAA
957430 TTATATAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 5 0.18
11 13 0.46
12 10 0.36
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAATATAAAA
Found at i:957493 original size:115 final size:112
Alignment explanation
Indices: 957341--957550 Score: 289
Period size: 115 Copynumber: 1.8 Consensus size: 112
957331 CCTAATCATG
* *
957341 AACGAACACATAATTTCATGTTAGTGAACGAATTTATAAAGTTTACA-AAATTAAAAAAAATATT
1 AACGAACACATAATTTCATGTTAGTAAACGAATTTATAAAATTTA-ATAAATTAAAAAAAATATT
957405 AATAAAAATATAAAAAAAATCTAAATTATATAAATTTAAAATTTAAACATT
65 AATAAAAATAT-AAAAAAATCT-AATTA-ATAAATTTAAAATTTAAACATT
* ** * *
957456 AACGAACACATAATTTTATGTTAGTAAAC-AAGTTTATAAAATTTAATAGTTTAAGAAAATTATT
1 AACGAACACATAATTTCATGTTAGTAAACGAA-TTTATAAAATTTAATAAATTAAAAAAAATATT
*
957520 AATAAAAATATAAAAATATCTAATTAATAAA
65 AATAAAAATATAAAAAAATCTAATTAATAAA
957551 AATATCTAAG
Statistics
Matches: 85, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
112 5 0.06
113 5 0.06
114 12 0.14
115 63 0.74
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (112 bp):
AACGAACACATAATTTCATGTTAGTAAACGAATTTATAAAATTTAATAAATTAAAAAAAATATTA
ATAAAAATATAAAAAAATCTAATTAATAAATTTAAAATTTAAACATT
Found at i:958361 original size:24 final size:24
Alignment explanation
Indices: 958334--958388 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
958324 TTATTTAACG
*
958334 TTCGTTTAAATGTTTGTGAACACA
1 TTCGTTTAAATGTTCGTGAACACA
* * *
958358 TTCGTTT-AGTGTTCGTGGACATA
1 TTCGTTTAAATGTTCGTGAACACA
958381 TTCGTTTA
1 TTCGTTTA
958389 GTATTCGCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 19 0.73
24 7 0.27
ACGTcount: A:0.22, C:0.13, G:0.20, T:0.45
Consensus pattern (24 bp):
TTCGTTTAAATGTTCGTGAACACA
Found at i:958370 original size:23 final size:23
Alignment explanation
Indices: 958351--958435 Score: 107
Period size: 23 Copynumber: 3.7 Consensus size: 23
958341 AAATGTTTGT
* *
958351 GAACACATTCGTTTAGTGTTCGT
1 GAACATATTCGTTTAGTGTTCGC
* *
958374 GGACATATTCGTTTAGTATTCGC
1 GAACATATTCGTTTAGTGTTCGC
* *
958397 GAACATGTTCATTTAGTGTTCGC
1 GAACATATTCGTTTAGTGTTCGC
*
958420 GAACATGTTCGTTTAG
1 GAACATATTCGTTTAG
958436 AATAAAAAGA
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 53 1.00
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.39
Consensus pattern (23 bp):
GAACATATTCGTTTAGTGTTCGC
Found at i:965729 original size:15 final size:14
Alignment explanation
Indices: 965709--965741 Score: 57
Period size: 14 Copynumber: 2.3 Consensus size: 14
965699 CCGTTATCAA
965709 TTTTTCGGGTATTAT
1 TTTTTC-GGTATTAT
965724 TTTTTCGGTATTAT
1 TTTTTCGGTATTAT
965738 TTTT
1 TTTT
965742 CCGCTTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.12, C:0.06, G:0.15, T:0.67
Consensus pattern (14 bp):
TTTTTCGGTATTAT
Found at i:971652 original size:15 final size:15
Alignment explanation
Indices: 971632--971662 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
971622 AATTATCAAC
971632 AAATAACATAAAATA
1 AAATAACATAAAATA
*
971647 AAATAACATAACATA
1 AAATAACATAAAATA
971662 A
1 A
971663 CCAAAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.10, G:0.00, T:0.19
Consensus pattern (15 bp):
AAATAACATAAAATA
Found at i:971962 original size:55 final size:55
Alignment explanation
Indices: 971864--972152 Score: 287
Period size: 55 Copynumber: 5.3 Consensus size: 55
971854 CGAATGATGG
* * * * ** * * *
971864 GTCCGTTCCCTATTCCTTCAGGCCGTATAAGACTCGAGTAATCTTTAACTAACAT
1 GTCCGCTCCCTATTCCTTCAGACAGTATAGGACTCGAACAATCTTCAACAAACGT
* * *
971919 ATTCGCTCCCTATTTCTTCAGACAGTATAGGACTCGAACAATCTTCAACAAACGT
1 GTCCGCTCCCTATTCCTTCAGACAGTATAGGACTCGAACAATCTTCAACAAACGT
* * * * *
971974 GTCCGCTCTCTATTTCTTCAGAGAGTATAGGACTTGAACAATCTTCAACAAACGG
1 GTCCGCTCCCTATTCCTTCAGACAGTATAGGACTCGAACAATCTTCAACAAACGT
* * * * **
972029 GTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATA-AAGCAA
1 GTCCGCTCCCTATTCCTTCAGACAGTATAGGACTCGAACAATCTTCA-ACAAACGT
* * * * *
972084 GTCCGCTCTCTATTCATTCAGAGAG--TAGAACTCGAACAATCTTCAACAAACGA
1 GTCCGCTCCCTATTCCTTCAGACAGTATAGGACTCGAACAATCTTCAACAAACGT
*
972137 GTCCGCTCTCTATTCC
1 GTCCGCTCCCTATTCC
972153 ACTAGAGAGT
Statistics
Matches: 204, Mismatches: 28, Indels: 6
0.86 0.12 0.03
Matches are distributed among these distances:
52 1 0.00
53 39 0.19
55 163 0.80
56 1 0.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (55 bp):
GTCCGCTCCCTATTCCTTCAGACAGTATAGGACTCGAACAATCTTCAACAAACGT
Found at i:972168 original size:108 final size:109
Alignment explanation
Indices: 971922--972173 Score: 332
Period size: 110 Copynumber: 2.3 Consensus size: 109
971912 CTAACATATT
* * * * * **
971922 CGCTCCCTATTTCTTCAGACAGTATAGGACTCGAACAATCTTCAACAAACGTGTCCGCTCTCTAT
1 CGCTCTCTATTCCCTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACAAGTCCGCTCTCTAT
* * *
971987 TTCTTCAGAGAGTATAGGACTTGAACAATCTTCAACAAACGGGTC
66 TTCTTCAGAGAG-ATAGAACTCGAACAATCTTCAACAAACGAGTC
* *
972032 CGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATA-AAGCAAGTCCGCTCTCTA
1 CGCTCTCTATTCCCTCAGAGAGTATAGAACTCGAACAATCTTCA-ACAAACAAGTCCGCTCTCTA
972096 -TTCATTCAGAGAG-TAGAACTCGAACAATCTTCAACAAACGAGTC
65 TTTC-TTCAGAGAGATAGAACTCGAACAATCTTCAACAAACGAGTC
972140 CGCTCTCTATTCCACT-AGAGAGTATAGAACTCGA
1 CGCTCTCTATTCC-CTCAGAGAGTATAGAACTCGA
972174 TCTTCATAAA
Statistics
Matches: 128, Mismatches: 11, Indels: 8
0.87 0.07 0.05
Matches are distributed among these distances:
108 59 0.46
109 4 0.03
110 64 0.50
111 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (109 bp):
CGCTCTCTATTCCCTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACAAGTCCGCTCTCTAT
TTCTTCAGAGAGATAGAACTCGAACAATCTTCAACAAACGAGTC
Found at i:972272 original size:37 final size:37
Alignment explanation
Indices: 972185--972299 Score: 142
Period size: 37 Copynumber: 3.1 Consensus size: 37
972175 CTTCATAAAA
* *
972185 TGAATTTGCTTCACTACTCTTCTGTGAAGGCTTATAGA-
1 TGAA-TTGCTTCACTACTCTTCCGTAAAGGCTTA-AGAT
* *
972223 TGATTTGCTTCACTACTCTTCCGTAAAGGCTTAGGAT
1 TGAATTGCTTCACTACTCTTCCGTAAAGGCTTAAGAT
* * *
972260 TGAATTGTTTCACTGCTCTTTCGTAAAGGCTTAAGAT
1 TGAATTGCTTCACTACTCTTCCGTAAAGGCTTAAGAT
972297 TGA
1 TGA
972300 CTTTTTTCGA
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
36 2 0.03
37 62 0.93
38 3 0.04
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.39
Consensus pattern (37 bp):
TGAATTGCTTCACTACTCTTCCGTAAAGGCTTAAGAT
Found at i:973430 original size:45 final size:42
Alignment explanation
Indices: 973381--973532 Score: 129
Period size: 44 Copynumber: 3.5 Consensus size: 42
973371 CCCCCTTTTA
*
973381 TTTCTTTTTTTTCATCATTTTTTCTTTTCTTTTTTCTTTCTCATT
1 TTTCATTTTTTTCATCATTTTTTCTTTTC-TTTTTCTTT-TC-TT
*
973426 TTTC-TTCAATTTTC--CATTTTTTCTGTTTCTTTTT-TTTTC-T
1 TTTCATT--TTTTTCATCATTTTTTCT-TTTCTTTTTCTTTTCTT
*
973466 TTTCATTTTTTCCATCATTTTTT-TTTTCCATTTTTCTTTTCTTCT
1 TTTCATTTTTTTCATCATTTTTTCTTTT-C-TTTTTCTTTTC-T-T
*
973511 TTTCATTTTTTT-ATTATTTTTT
1 TTTCATTTTTTTCATCATTTTTT
973533 TCTCCATTTT
Statistics
Matches: 90, Mismatches: 5, Indels: 25
0.75 0.04 0.21
Matches are distributed among these distances:
39 7 0.08
40 7 0.08
41 15 0.17
42 7 0.08
43 3 0.03
44 26 0.29
45 20 0.22
46 5 0.06
ACGTcount: A:0.09, C:0.16, G:0.01, T:0.74
Consensus pattern (42 bp):
TTTCATTTTTTTCATCATTTTTTCTTTTCTTTTTCTTTTCTT
Found at i:973460 original size:15 final size:15
Alignment explanation
Indices: 973398--973476 Score: 53
Period size: 16 Copynumber: 5.3 Consensus size: 15
973388 TTTTTCATCA
973398 TTTTTTCTTTTC---
1 TTTTTTCTTTTCTAT
973410 TTTTTTC-TTTCTCAT
1 TTTTTTCTTTTCT-AT
*
973425 TTTTCTTCAATTTTCCA-
1 TTTT-TTC--TTTTCTAT
*
973442 TTTTTTCTGTTTCTTT
1 TTTTTTCT-TTTCTAT
973458 TTTTTTCTTTTC-AT
1 TTTTTTCTTTTCTAT
973472 TTTTT
1 TTTTT
973477 CCATCATTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 18
0.71 0.05 0.24
Matches are distributed among these distances:
11 4 0.08
12 7 0.13
14 7 0.13
15 12 0.23
16 14 0.26
17 4 0.08
18 1 0.02
19 4 0.08
ACGTcount: A:0.06, C:0.16, G:0.01, T:0.76
Consensus pattern (15 bp):
TTTTTTCTTTTCTAT
Found at i:973474 original size:13 final size:13
Alignment explanation
Indices: 973395--973519 Score: 80
Period size: 12 Copynumber: 9.1 Consensus size: 13
973385 TTTTTTTTCA
973395 TCATTTTTTCTTT
1 TCATTTTTTCTTT
973408 TC-TTTTTTCTTT
1 TCATTTTTTCTTT
973420 CTCATTTTTCTTCAATTT
1 -TCA-TTTT-TTC--TTT
973438 TCCATTTTTTCTGTT
1 T-CATTTTTTCT-TT
*
973453 TCTTTTTTTTTCTTT
1 TC--ATTTTTTCTTT
**
973468 TCATTTTTTC-CA
1 TCATTTTTTCTTT
973480 TCATTTTTT-TTT
1 TCATTTTTTCTTT
973492 TCCA-TTTTTCTTT
1 T-CATTTTTTCTTT
973505 TC-TTCTTTTCATTT
1 TCATT-TTTTC-TTT
973519 T
1 T
973520 TTTATTATTT
Statistics
Matches: 90, Mismatches: 6, Indels: 31
0.71 0.05 0.24
Matches are distributed among these distances:
12 27 0.30
13 22 0.24
14 6 0.07
15 11 0.12
16 14 0.16
17 5 0.06
18 5 0.06
ACGTcount: A:0.08, C:0.18, G:0.01, T:0.73
Consensus pattern (13 bp):
TCATTTTTTCTTT
Found at i:973499 original size:61 final size:59
Alignment explanation
Indices: 973389--973522 Score: 137
Period size: 61 Copynumber: 2.2 Consensus size: 59
973379 TATTTCTTTT
* **
973389 TTTTCATCATTTTTTCTTTTCTTTTTTCTTTCTCATTTTTCTTCAATTTTCCATTTT-TTC
1 TTTTCAT-TTTTTTTCTTTTCTTTTTTCCATCTCATTTTTCTTCAATTTTCC-TTTTCTTC
* * * * *
973449 TGTTTCTTTTTTTTTCTTTTCATTTTTTCCATCAT-TTTTTTTTTCCATTTTTCTTTTCTTC
1 T-TTTCATTTTTTTTCTTTTC-TTTTTTCCATC-TCATTTTTCTTCAATTTTCCTTTTCTTC
973510 TTTTCATTTTTTT
1 TTTTCATTTTTTT
973523 ATTATTTTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
60 28 0.46
61 32 0.52
62 1 0.02
ACGTcount: A:0.08, C:0.18, G:0.01, T:0.73
Consensus pattern (59 bp):
TTTTCATTTTTTTTCTTTTCTTTTTTCCATCTCATTTTTCTTCAATTTTCCTTTTCTTC
Found at i:973521 original size:16 final size:15
Alignment explanation
Indices: 973398--973555 Score: 59
Period size: 13 Copynumber: 10.7 Consensus size: 15
973388 TTTTTCATCA
973398 TTTT-TTCTTTTCTT
1 TTTTCTTCTTTTCTT
* *
973412 TTTTC-T-TTCTCAT
1 TTTTCTTCTTTTCTT
**
973425 TTTTCTTCAATTTTCCA
1 TTTTCTTC--TTTTCTT
973442 TTTT-TTCTGTTTCTT
1 TTTTCTTCT-TTTCTT
*
973457 TTTTTTTCTTTTCATT
1 TTTTCTTCTTTTC-TT
*
973473 TTTTCCATCATTTT-TT
1 TTTT-CTTC-TTTTCTT
*
973489 TTTTC--CATTTT-TC
1 TTTTCTTC-TTTTCTT
*
973502 TTTTCTTCTTTTCAT
1 TTTTCTTCTTTTCTT
* *
973517 TTTT-TTATTAT-TT
1 TTTTCTTCTTTTCTT
*
973530 TTTTCTCCATTTT-TT
1 TTTTCTTC-TTTTCTT
973545 TATTTCTTCTT
1 T-TTTCTTCTT
973556 CATGCGAAAT
Statistics
Matches: 109, Mismatches: 19, Indels: 31
0.69 0.12 0.19
Matches are distributed among these distances:
13 27 0.25
14 17 0.16
15 26 0.24
16 25 0.23
17 10 0.09
18 4 0.04
ACGTcount: A:0.08, C:0.17, G:0.01, T:0.74
Consensus pattern (15 bp):
TTTTCTTCTTTTCTT
Found at i:973533 original size:20 final size:22
Alignment explanation
Indices: 973485--973548 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 22
973475 TTCCATCATT
973485 TTTTTTTTCCATTTTTCTT-TT-
1 TTTTTTTTCCATTTTT-TTATTA
* *
973506 CTTCTTTT-CATTTTTTTATTA
1 TTTTTTTTCCATTTTTTTATTA
973527 TTTTTTTCTCCATTTTTTTATT
1 TTTTTTT-TCCATTTTTTTATT
973549 TCTTCTTCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
19 2 0.06
20 9 0.26
21 11 0.31
22 1 0.03
23 12 0.34
ACGTcount: A:0.09, C:0.14, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTTTTTCCATTTTTTTATTA
Found at i:973533 original size:45 final size:44
Alignment explanation
Indices: 973457--973555 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 44
973447 TCTGTTTCTT
* *
973457 TTTTTTTCTTTTCATTTTTTCCATCATTTTTTTTTTCCATTTTTC
1 TTTTCTTCTTTTCATTTTTTCCATCA-TTTTTTTCTCCATTTTTC
* * *
973502 TTTTCTTCTTTTCATTTTTT-TATTATTTTTTTCTCCATTTTTT
1 TTTTCTTCTTTTCATTTTTTCCATCATTTTTTTCTCCATTTTTC
973545 TATTTCTTCTT
1 T-TTTCTTCTT
973556 CATGCGAAAT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
43 17 0.35
44 12 0.25
45 19 0.40
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (44 bp):
TTTTCTTCTTTTCATTTTTTCCATCATTTTTTTCTCCATTTTTC
Found at i:983243 original size:50 final size:46
Alignment explanation
Indices: 983200--983342 Score: 184
Period size: 45 Copynumber: 3.1 Consensus size: 46
983190 TGTTATTCAC
* * *
983200 AAAAAGAAATCCTAACCGCATGATATCGAATTCGCATGCTTGTTT-G
1 AAAAACAAA-CCTAACCGCATGATATCTAGTTCGCATGCTTGTTTCG
*
983246 AAAAACAAACCTAACCTCATGATATCTAGTTCGCATGCTTG-TTCG
1 AAAAACAAACCTAACCGCATGATATCTAGTTCGCATGCTTGTTTCG
* *
983291 AAAAATAAACCTAACCGCATGATATCTAGTTCGCAAGCATT-TATTCG
1 AAAAACAAACCTAACCGCATGATATCTAGTTCGCATGC-TTGT-TTCG
983338 AAAAA
1 AAAAA
983343 TGAAAATAAA
Statistics
Matches: 86, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
44 2 0.02
45 65 0.76
46 10 0.12
47 9 0.10
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (46 bp):
AAAAACAAACCTAACCGCATGATATCTAGTTCGCATGCTTGTTTCG
Found at i:983267 original size:45 final size:45
Alignment explanation
Indices: 983200--983325 Score: 189
Period size: 45 Copynumber: 2.8 Consensus size: 45
983190 TGTTATTCAC
* * * *
983200 AAAAAGAAATCCTAACCGCATGATATCGAATTCGCATGCTTGTTTG
1 AAAAACAAA-CCTAACCGCATGATATCTAGTTCGCATGCTTGTTCG
*
983246 AAAAACAAACCTAACCTCATGATATCTAGTTCGCATGCTTGTTCG
1 AAAAACAAACCTAACCGCATGATATCTAGTTCGCATGCTTGTTCG
*
983291 AAAAATAAACCTAACCGCATGATATCTAGTTCGCA
1 AAAAACAAACCTAACCGCATGATATCTAGTTCGCA
983326 AGCATTTATT
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
45 65 0.89
46 8 0.11
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (45 bp):
AAAAACAAACCTAACCGCATGATATCTAGTTCGCATGCTTGTTCG
Found at i:986693 original size:51 final size:51
Alignment explanation
Indices: 986617--986714 Score: 151
Period size: 51 Copynumber: 1.9 Consensus size: 51
986607 TTTTCTTTGC
* *
986617 TCATTTTTCTCACTATTTTTTCTCTCAAATGAATAGAAGAAGAAGAAGAAA
1 TCATTTTTCTCACTACTTTTTCTCTCAAACGAATAGAAGAAGAAGAAGAAA
* * *
986668 TCATTTTTCTCACTACTTTTTCTCTCAGACGAATTGAAGAAGGAGAA
1 TCATTTTTCTCACTACTTTTTCTCTCAAACGAATAGAAGAAGAAGAA
986715 ATGGGTTTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36
Consensus pattern (51 bp):
TCATTTTTCTCACTACTTTTTCTCTCAAACGAATAGAAGAAGAAGAAGAAA
Found at i:986737 original size:23 final size:23
Alignment explanation
Indices: 986703--986868 Score: 134
Period size: 23 Copynumber: 7.5 Consensus size: 23
986693 CAGACGAATT
* *
986703 GAAGAAGGAGAAATGGGTTTATG
1 GAAGAAGAAGAAATGAGTTTATG
*
986726 GAAGAATAAGAAATGAGTTTATG
1 GAAGAAGAAGAAATGAGTTTATG
* * *
986749 GAAGAAAAATAAATGTGTTTATG
1 GAAGAAGAAGAAATGAGTTTATG
* *
986772 GAATAAAAAGAAA-G-G-----G
1 GAAGAAGAAGAAATGAGTTTATG
**
986788 GTAAGAAGAAGAAGCGAGTTTATG
1 G-AAGAAGAAGAAATGAGTTTATG
*
986812 GAAGAAGAAGAAATG-GATTTATA
1 GAAGAAGAAGAAATGAG-TTTATG
* *
986835 GAAGAAGAAGCAATAAGTTTATG
1 GAAGAAGAAGAAATGAGTTTATG
986858 GAAGAA-AAGAA
1 GAAGAAGAAGAA
986869 TAGTTTCGAA
Statistics
Matches: 115, Mismatches: 18, Indels: 21
0.75 0.12 0.14
Matches are distributed among these distances:
16 2 0.02
17 9 0.08
18 1 0.01
19 1 0.01
21 1 0.01
22 6 0.05
23 92 0.80
24 3 0.03
ACGTcount: A:0.49, C:0.01, G:0.29, T:0.20
Consensus pattern (23 bp):
GAAGAAGAAGAAATGAGTTTATG
Found at i:987161 original size:21 final size:20
Alignment explanation
Indices: 987124--987162 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
987114 CTTACCAACT
*
987124 TTCTATTTTGATATCAATAA
1 TTCTATTTTAATATCAATAA
*
987144 TTCTATTTTTAATCTCAAT
1 TTCTA-TTTTAATATCAAT
987163 TATTGCAATG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.31, C:0.13, G:0.03, T:0.54
Consensus pattern (20 bp):
TTCTATTTTAATATCAATAA
Found at i:987579 original size:12 final size:10
Alignment explanation
Indices: 987549--987574 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
987539 TTTTTTTTAG
987549 AAAAAATTAT
1 AAAAAATTAT
987559 AAAAAATTAT
1 AAAAAATTAT
987569 AAAAAA
1 AAAAAA
987575 AATTAAAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:987600 original size:2 final size:2
Alignment explanation
Indices: 987593--987629 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
987583 TCTAATTATG
987593 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
987630 TAAGTCAGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:990262 original size:21 final size:21
Alignment explanation
Indices: 990214--990263 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
990204 AATTTTTATA
*
990214 TATT-TTTAAAAAGTTAATGT
1 TATTGTTTAAAAAGTTAAAGT
990234 T-TTAGTTTAAAATA-TTAAAGT
1 TATT-GTTTAAAA-AGTTAAAGT
990255 TATTGTTTA
1 TATTGTTTA
990264 TTTGTTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
19 2 0.08
20 1 0.04
21 19 0.76
22 3 0.12
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (21 bp):
TATTGTTTAAAAAGTTAAAGT
Found at i:992920 original size:19 final size:19
Alignment explanation
Indices: 992896--992945 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
992886 TCATTTTGAT
992896 TTTCAAAATCAACTTTTAC
1 TTTCAAAATCAACTTTTAC
*
992915 TTTCAAAATCAACTTTTGC
1 TTTCAAAATCAACTTTTAC
992934 TTTCAAAATCAA
1 TTTCAAAATCAA
992946 ATTATCTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.38, C:0.20, G:0.02, T:0.40
Consensus pattern (19 bp):
TTTCAAAATCAACTTTTAC
Found at i:999651 original size:36 final size:38
Alignment explanation
Indices: 999575--999652 Score: 92
Period size: 37 Copynumber: 2.1 Consensus size: 38
999565 AACAAGTTAG
* *
999575 AAAATATTTATACATTTTCTTTAAAAATTTAAATTCAT
1 AAAATATTTATACATTTTCTTTAAAAATTGAAAATCAT
999613 AAAAT-TTATATA-ATTTT-TTTACAAAATTGAAAAT-AT
1 AAAATATT-TATACATTTTCTTTA-AAAATTGAAAATCAT
999649 AAAA
1 AAAA
999653 AGGTTTAATG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
36 10 0.28
37 17 0.47
38 9 0.25
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.44
Consensus pattern (38 bp):
AAAATATTTATACATTTTCTTTAAAAATTGAAAATCAT
Found at i:1003057 original size:34 final size:34
Alignment explanation
Indices: 1003009--1003074 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
1002999 TTTTCCCAAT
1003009 TCGCAATGCAAATAAGTAAATCGCAACGCGAAAA
1 TCGCAATGCAAATAAGTAAATCGCAACGCGAAAA
*
1003043 TCGCAATGCGAATAAGTAAATCGCAACGCGAA
1 TCGCAATGCAAATAAGTAAATCGCAACGCGAA
1003075 TTGGGAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.44, C:0.21, G:0.20, T:0.15
Consensus pattern (34 bp):
TCGCAATGCAAATAAGTAAATCGCAACGCGAAAA
Found at i:1003065 original size:20 final size:20
Alignment explanation
Indices: 1003009--1003094 Score: 67
Period size: 20 Copynumber: 4.5 Consensus size: 20
1002999 TTTTCCCAAT
*
1003009 TCGCAATGCAAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
*
1003029 TCGCAACGCG----A--AAA
1 TCGCAATGCGAATAAGTAAA
1003043 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
* ** *
1003063 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAA-TAAGTAAA
1003084 TCGCAATGCGA
1 TCGCAATGCGA
1003095 TACTGACTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 13
0.71 0.11 0.18
Matches are distributed among these distances:
14 12 0.24
16 1 0.02
18 1 0.02
20 22 0.43
21 15 0.29
ACGTcount: A:0.42, C:0.20, G:0.22, T:0.16
Consensus pattern (20 bp):
TCGCAATGCGAATAAGTAAA
Found at i:1003086 original size:21 final size:20
Alignment explanation
Indices: 1003038--1003094 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
1003028 ATCGCAACGC
1003038 GAAAATCGCAATGCGAATAA
1 GAAAATCGCAATGCGAATAA
* * **
1003058 GTAAATCGCAACGCGAATTGG
1 GAAAATCGCAATGCGAA-TAA
1003079 GAAAATCGCAATGCGA
1 GAAAATCGCAATGCGA
1003095 TACTGACTAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 15 0.50
21 15 0.50
ACGTcount: A:0.42, C:0.18, G:0.25, T:0.16
Consensus pattern (20 bp):
GAAAATCGCAATGCGAATAA
Found at i:1003108 original size:20 final size:19
Alignment explanation
Indices: 1003083--1003213 Score: 88
Period size: 20 Copynumber: 6.7 Consensus size: 19
1003073 AATTGGGAAA
*
1003083 ATCGCAATGCGATACTGACT
1 ATCGCAACGCGATACT-ACT
* * *
1003103 ATCGCAATGCGATAATACAAA
1 ATCGCAACGCGATACTAC--T
*
1003124 ATCGCAACGAGATACT--T
1 ATCGCAACGCGATACTACT
1003141 -TCGCAACGCGATACTGACT
1 ATCGCAACGCGATACT-ACT
* *
1003160 TTCGCAACGCGATTCTGACT
1 ATCGCAACGCGATACT-ACT
* *
1003180 TTCGCAACGCGATAATACAT
1 ATCGCAACGCGATACTAC-T
*
1003200 AATCGCAATGCGAT
1 -ATCGCAACGCGAT
1003214 TTTCAAAGCG
Statistics
Matches: 91, Mismatches: 12, Indels: 15
0.77 0.10 0.13
Matches are distributed among these distances:
16 14 0.15
19 5 0.05
20 48 0.53
21 24 0.26
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (19 bp):
ATCGCAACGCGATACTACT
Found at i:1003146 original size:16 final size:16
Alignment explanation
Indices: 1003125--1003155 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1003115 TAATACAAAA
1003125 TCGCAACGAGATACTT
1 TCGCAACGAGATACTT
*
1003141 TCGCAACGCGATACT
1 TCGCAACGAGATACT
1003156 GACTTTCGCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (16 bp):
TCGCAACGAGATACTT
Found at i:1003409 original size:22 final size:22
Alignment explanation
Indices: 1003381--1003424 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
1003371 CACTCTCTCA
*
1003381 CCCATCTCCGACGAAATTCGTC
1 CCCATCTCCGACGAAATCCGTC
*
1003403 CCCATCTCCGGCGAAATCCGTC
1 CCCATCTCCGACGAAATCCGTC
1003425 TATCTCCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.43, G:0.16, T:0.20
Consensus pattern (22 bp):
CCCATCTCCGACGAAATCCGTC
Found at i:1003741 original size:20 final size:20
Alignment explanation
Indices: 1003687--1003745 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
1003677 GCGATTCTCT
**
1003687 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
1003707 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
* **
1003727 TGTTGCGATTTTCATTTTC
1 CGTTGCGATAGTCATTTTC
1003746 AGAAACTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.42
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:1005032 original size:18 final size:18
Alignment explanation
Indices: 1005011--1005055 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
1005001 TCCACTTCGG
*
1005011 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
*
1005029 GAGCTATCACCTCACCCA
1 GAGCCATCACCTCACCCA
1005047 GAGCCATCA
1 GAGCCATCA
1005056 TATGATCGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.27, C:0.44, G:0.16, T:0.13
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:1005591 original size:19 final size:20
Alignment explanation
Indices: 1005537--1005592 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
1005527 TAGTTTACTT
* *
1005537 TCGCAACACGAAAATGACTA
1 TCGCAACGCGGAAATGACTA
*
1005557 TCGCAACGCGGAAATGGCTA
1 TCGCAACGCGGAAATGACTA
*
1005577 TCGCAATGC-GAAATGA
1 TCGCAACGCGGAAATGA
1005593 AAATCGAAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 6 0.19
20 25 0.81
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (20 bp):
TCGCAACGCGGAAATGACTA
Found at i:1005618 original size:33 final size:33
Alignment explanation
Indices: 1005576--1005663 Score: 142
Period size: 32 Copynumber: 2.7 Consensus size: 33
1005566 GGAAATGGCT
1005576 ATCGCAATGCGAAATGAAAATCGAAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGAAACGACAAA
* *
1005609 ATCGCAATGCGAAATG-AAATTGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGAAACGACAAA
*
1005641 ATCGCAACGCGAAATGAAAATCG
1 ATCGCAATGCGAAATGAAAATCG
1005664 CAATGCGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
32 29 0.58
33 21 0.42
ACGTcount: A:0.48, C:0.19, G:0.19, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGAAACGACAAA
Found at i:1005647 original size:14 final size:14
Alignment explanation
Indices: 1005592--1005649 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 14
1005582 ATGCGAAATG
*
1005592 AAAATCGAAACGAC
1 AAAATCGCAACGAC
*
1005606 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
*
1005622 ATGAAATTGCAACGAC
1 A--AAATCGCAACGAC
1005638 AAAATCGCAACG
1 AAAATCGCAACG
1005650 CGAAATGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
14 19 0.54
16 8 0.23
18 8 0.23
ACGTcount: A:0.50, C:0.21, G:0.17, T:0.12
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:1005702 original size:14 final size:14
Alignment explanation
Indices: 1005683--1005740 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
1005673 TTGTGTTTCG
1005683 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
* *
1005697 CGTTGCAATTTCATTT
1 CGTTGCGATTT--TGT
1005713 CGCGTTGCGATTTTGT
1 --CGTTGCGATTTTGT
1005729 CGTTGCGATTTT
1 CGTTGCGATTTT
1005741 CATTTCGCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.61
16 4 0.11
18 10 0.28
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:1005719 original size:32 final size:33
Alignment explanation
Indices: 1005678--1005756 Score: 133
Period size: 32 Copynumber: 2.4 Consensus size: 33
1005668 GCGATTTGTG
1005678 TTTCGCGTTGCGATTTTGTCGTTGC-AATTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGAATTTCA
*
1005710 TTTCGCGTTGCGATTTTGTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTTTGTCGTTGCGAATTTCA
*
1005743 TTTCGCATTGCGAT
1 TTTCGCGTTGCGAT
1005757 AGCCATTTCC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
32 25 0.57
33 19 0.43
ACGTcount: A:0.11, C:0.19, G:0.23, T:0.47
Consensus pattern (33 bp):
TTTCGCGTTGCGATTTTGTCGTTGCGAATTTCA
Found at i:1005775 original size:20 final size:20
Alignment explanation
Indices: 1005750--1005796 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
1005740 TCATTTCGCA
1005750 TTGCGATAGCCATTTCCACG
1 TTGCGATAGCCATTTCCACG
* * *
1005770 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGCCATTTCCACG
1005790 TTGCGAT
1 TTGCGAT
1005797 TTTAAGTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36
Consensus pattern (20 bp):
TTGCGATAGCCATTTCCACG
Found at i:1005893 original size:27 final size:26
Alignment explanation
Indices: 1005829--1005895 Score: 75
Period size: 25 Copynumber: 2.6 Consensus size: 26
1005819 TAAACTATTC
*
1005829 TTCTTCTGGAATGTTTATATATGTTG
1 TTCTTCTGGAATGTTTATATAAGTTG
**
1005855 TTCTT-TTAAATGTTTATATAAG-TG
1 TTCTTCTGGAATGTTTATATAAGTTG
1005879 CTTACTTCTGGAATGTT
1 -TT-CTTCTGGAATGTT
1005896 ATCTGAGCAT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
24 2 0.06
25 16 0.48
26 8 0.24
27 7 0.21
ACGTcount: A:0.22, C:0.09, G:0.16, T:0.52
Consensus pattern (26 bp):
TTCTTCTGGAATGTTTATATAAGTTG
Found at i:1007615 original size:20 final size:20
Alignment explanation
Indices: 1007586--1007636 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
1007576 AAATGATTGC
1007586 CTTTCGCAACGCGATTCTGA
1 CTTTCGCAACGCGATTCTGA
*
1007606 CTTTCACAACGCGATTCTGA
1 CTTTCGCAACGCGATTCTGA
1007626 CTTTCGCAACG
1 CTTTCGCAACG
1007637 AGATAATACA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.22, C:0.31, G:0.18, T:0.29
Consensus pattern (20 bp):
CTTTCGCAACGCGATTCTGA
Found at i:1008399 original size:24 final size:24
Alignment explanation
Indices: 1008372--1008425 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
1008362 GTATTTGAAA
* *
1008372 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTGGTCAATACACGGAC
*
1008396 TTTGATATTGGTCAATACACGGAT
1 TTTGATATTGGTCAATACACGGAC
1008420 TTTGAT
1 TTTGAT
1008426 GATGTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.24, C:0.17, G:0.20, T:0.39
Consensus pattern (24 bp):
TTTGATATTGGTCAATACACGGAC
Found at i:1010940 original size:33 final size:33
Alignment explanation
Indices: 1010898--1011021 Score: 169
Period size: 33 Copynumber: 3.8 Consensus size: 33
1010888 AATTACTATC
1010898 GCAATGCGAAATGAAAATCGCAACGAGAGAATT
1 GCAATGCGAAATGAAAATCGCAACGAGAGAATT
** *
1010931 GCAATGCGAAATGAAAATCGCAACGCTA-ATTT
1 GCAATGCGAAATGAAAATCGCAACGAGAGAATT
* * *
1010963 CGCAATGCGAAATAAAAATCGCAACGAGGGAATC
1 -GCAATGCGAAATGAAAATCGCAACGAGAGAATT
*
1010997 GCAATGCGAAATGAAAATCACAACG
1 GCAATGCGAAATGAAAATCGCAACG
1011022 CGAATTTAAT
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
32 3 0.04
33 73 0.94
34 2 0.03
ACGTcount: A:0.44, C:0.19, G:0.22, T:0.15
Consensus pattern (33 bp):
GCAATGCGAAATGAAAATCGCAACGAGAGAATT
Found at i:1011002 original size:66 final size:66
Alignment explanation
Indices: 1010896--1011028 Score: 221
Period size: 66 Copynumber: 2.0 Consensus size: 66
1010886 GAAATTACTA
* * * *
1010896 TCGCAATGCGAAATGAAAATCGCAACGAGAGAATTGCAATGCGAAATGAAAATCGCAACGCTAAT
1 TCGCAATGCGAAATAAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCACAACGCGAAT
1010961 T
66 T
*
1010962 TCGCAATGCGAAATAAAAATCGCAACGAGGGAATCGCAATGCGAAATGAAAATCACAACGCGAAT
1 TCGCAATGCGAAATAAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCACAACGCGAAT
1011027 T
66 T
1011028 T
1 T
1011029 AATTTCGCGT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.43, C:0.19, G:0.21, T:0.17
Consensus pattern (66 bp):
TCGCAATGCGAAATAAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCACAACGCGAAT
T
Done.