Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007962.1 Hibiscus syriacus cultivar Beakdansim tig00110391_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1774241
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 8
Found at i:664590 original size:21 final size:20
Alignment explanation
Indices: 664556--664594 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
664546 CATCAGACAA
664556 AACCACAAGAGAAATCACAGC
1 AACCACAAGAGAAA-CACAGC
664577 AACCACACAG-GAAACACA
1 AACCACA-AGAGAAACACA
664595 TAGCAAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 4 0.24
21 11 0.65
22 2 0.12
ACGTcount: A:0.54, C:0.31, G:0.13, T:0.03
Consensus pattern (20 bp):
AACCACAAGAGAAACACAGC
Found at i:665280 original size:6 final size:6
Alignment explanation
Indices: 665269--665300 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
665259 TATTATTTAT
665269 TTTTCA TTTTCA TTTTCA -TTTCA -TTTCA TTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTT
665301 ATTATTTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTTCA
Found at i:666065 original size:20 final size:20
Alignment explanation
Indices: 666026--666065 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
666016 GCTTGATATC
*
666026 ACTGTAGCAATATTGATACT
1 ACTGTAGCAATATCGATACT
* *
666046 ACTGTAGCAGTATCGGTACT
1 ACTGTAGCAATATCGATACT
666066 CATTTTTGCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (20 bp):
ACTGTAGCAATATCGATACT
Found at i:678183 original size:3 final size:3
Alignment explanation
Indices: 678175--678255 Score: 64
Period size: 3 Copynumber: 28.0 Consensus size: 3
678165 TGTCTATTCT
* * *
678175 TTA TTA TTA TCA TTG TTA TTA TTA TTA TTA TTA TTTA TT- TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* *
678220 -CA TT- TGTA TT- TTA -TC TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
678256 ATAAACTCAA
Statistics
Matches: 62, Mismatches: 9, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
2 7 0.11
3 51 0.82
4 4 0.06
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:679842 original size:21 final size:22
Alignment explanation
Indices: 679818--679858 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
679808 TCAGGATAGG
679818 GAGTATCGACAC-TCCTTTAAT
1 GAGTATCGACACTTCCTTTAAT
*
679839 GAGTATCGATACTTCCTTTA
1 GAGTATCGACACTTCCTTTA
679859 TAATATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.37
Consensus pattern (22 bp):
GAGTATCGACACTTCCTTTAAT
Found at i:685778 original size:737 final size:737
Alignment explanation
Indices: 684365--685836 Score: 2863
Period size: 737 Copynumber: 2.0 Consensus size: 737
684355 AAATGTATAG
*
684365 CTTTTGACATTTTTATTTTTTACGAAGTGAAATCATTTTAATAAAATAGATATTCATTGTTGGTT
1 CTTTTGACATTTTTATTTTTTACGAAGTGAAATCATTTTAATAAAATAGATATTCATTGTTGATT
684430 TTATTTATTATTTCGTTAGTTTTATTATCCATCTGTTACATTACGTTCAATATTTCATCTATCTT
66 TTATTTATTATTTCGTTAGTTTTATTATCCATCTGTTACATTACGTTCAATATTTCATCTATCTT
*
684495 GTGCATGGCATCTATTATTGATGCACTCATGCATCATGCATTTATTTTCTCATTTTCCAAATTAA
131 GTGCATGGCATCTATTATTGATGCACTCATGCATCATGCAATTATTTTCTCATTTTCCAAATTAA
* *
684560 TCAATGGCAATGTTGTCTTGCATTGTGGGTTAACGAAATTACGTCCAATATGACTGGATTTCAAT
196 TCAATGGCAATGTTATCTTGCATTGTGGGTTAACGAAATTACGTCCAACATGACTGGATTTCAAT
684625 TTCTATTAATTCATGTAGTAAGGAGACATCATTCTTAAATAAAATCGAGTTAATTAAATCATGTT
261 TTCTATTAATTCATGTAGTAAGGAGACATCATTCTTAAATAAAATCGAGTTAATTAAATCATGTT
684690 CATTGAGACAAATATCATAAAATAGATTCACTCATTATTCAAAAGTCATCAAAATCGAGATGTAC
326 CATTGAGACAAATATCATAAAATAGATTCACTCATTATTCAAAAGTCATCAAAATCGAGATGTAC
*
684755 CAATTTTGGGCGTTGTGGGGGTGTTAATCTTTCCCCACTTATAATCGACTCCCAAACATTTAAAA
391 CAATTTTGGGCGTTGTGGGGGTGTTAATCTTTCCCCACTTATAATCGACTCCCAAACACTTAAAA
*
684820 ATGAATTTCTAGTAATAAGGTAAACTTCATTTAACTAGTTCTTCCTTCCTATTATGGGTTACTCT
456 ATGAATTTCTAGTAATAAGGTAAACTTCATTTAACTAGTTCTTCCTTCCTATTATGGGTTAATCT
684885 TGTAACTTTAAGCGATGTGTAAACTTAAGGAAGGGTTAGAGAAGATTAAAACTAAGAGGTGGATG
521 TGTAACTTTAAGCGATGTGTAAACTTAAGGAAGGGTTAGAGAAGATTAAAACTAAGAGGTGGATG
684950 TTTTATATGAGATTTAAGAAAATGAGTTTTTCAATGATATGTTGATATATGAGTTTTTATTGAGG
586 TTTTATATGAGATTTAAGAAAATGAGTTTTTCAATGATATGTTGATATATGAGTTTTTATTGAGG
685015 TTTATTAGTATAATTAACTTGTCAGAGGTGTGAATTAGAGATTAGAAACATTAGACATGATTAAA
651 TTTATTAGTATAATTAACTTGTCAGAGGTGTGAATTAGAGATTAGAAACATTAGACATGATTAAA
685080 AACATGTTAGAAAGAGTGATGA
716 AACATGTTAGAAAGAGTGATGA
685102 CTTTTGACATTTTTATTTTTTACGAAGTGAAATCATTTTAATAAAATAGATATTCATTGTTGATT
1 CTTTTGACATTTTTATTTTTTACGAAGTGAAATCATTTTAATAAAATAGATATTCATTGTTGATT
*
685167 TTATTTATTATTTCGTTATTTTTATTATCCATCTGTTACATTACGTTCAATATTTCATCTATCTT
66 TTATTTATTATTTCGTTAGTTTTATTATCCATCTGTTACATTACGTTCAATATTTCATCTATCTT
685232 GTGCATGGCATCTATTATTGATGCACTCATGCATCATGCAATTATTTTCTCATTTTCCAAATTAA
131 GTGCATGGCATCTATTATTGATGCACTCATGCATCATGCAATTATTTTCTCATTTTCCAAATTAA
685297 TCAATGGCAATGTTATCTTGCATTGTGGGTTAACGAAATTACGTCCAACATGACTGGATTTCAAT
196 TCAATGGCAATGTTATCTTGCATTGTGGGTTAACGAAATTACGTCCAACATGACTGGATTTCAAT
685362 TTCTATTAATTCATGTAGTAAGGAGACATCATTCTTAAATAAAATCGAGTTAATTAAATCATGTT
261 TTCTATTAATTCATGTAGTAAGGAGACATCATTCTTAAATAAAATCGAGTTAATTAAATCATGTT
*
685427 CATTGAGACAAATATCATAAAATAGATTCACTCATTATTCAAAAGTTATCAAAATCGAGATGTAC
326 CATTGAGACAAATATCATAAAATAGATTCACTCATTATTCAAAAGTCATCAAAATCGAGATGTAC
*
685492 CAATTTTGGGCGTTGTGGGGGTGTTAATCTTTCCCCACTTATAATCGACTCCCAAACCCTTAAAA
391 CAATTTTGGGCGTTGTGGGGGTGTTAATCTTTCCCCACTTATAATCGACTCCCAAACACTTAAAA
685557 ATGAATTTCTAGTAATAAGGTAAACTTCATTTAACTAGTTCTTCCTTCCTATTATGGGTTAATCT
456 ATGAATTTCTAGTAATAAGGTAAACTTCATTTAACTAGTTCTTCCTTCCTATTATGGGTTAATCT
685622 TGTAACTTTAAGCGATGTGTAAACTTAAGGAAGGGTTAGAGAAGATTAAAACTAAGAGGTGGATG
521 TGTAACTTTAAGCGATGTGTAAACTTAAGGAAGGGTTAGAGAAGATTAAAACTAAGAGGTGGATG
685687 TTTTATATGAGATTTAAGAAAATGAGTTTTTCAATGATATGTTGATATATGAGTTTTTATTGAGG
586 TTTTATATGAGATTTAAGAAAATGAGTTTTTCAATGATATGTTGATATATGAGTTTTTATTGAGG
685752 TTTATTAGTATAATTAACTTGTCAGAGGTGTGAATTAGAGATTAGAAACATTAGACATGATTAAA
651 TTTATTAGTATAATTAACTTGTCAGAGGTGTGAATTAGAGATTAGAAACATTAGACATGATTAAA
685817 AACATGTTAGAAAGAGTGAT
716 AACATGTTAGAAAGAGTGAT
685837 ATGATTCTTG
Statistics
Matches: 726, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
737 726 1.00
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (737 bp):
CTTTTGACATTTTTATTTTTTACGAAGTGAAATCATTTTAATAAAATAGATATTCATTGTTGATT
TTATTTATTATTTCGTTAGTTTTATTATCCATCTGTTACATTACGTTCAATATTTCATCTATCTT
GTGCATGGCATCTATTATTGATGCACTCATGCATCATGCAATTATTTTCTCATTTTCCAAATTAA
TCAATGGCAATGTTATCTTGCATTGTGGGTTAACGAAATTACGTCCAACATGACTGGATTTCAAT
TTCTATTAATTCATGTAGTAAGGAGACATCATTCTTAAATAAAATCGAGTTAATTAAATCATGTT
CATTGAGACAAATATCATAAAATAGATTCACTCATTATTCAAAAGTCATCAAAATCGAGATGTAC
CAATTTTGGGCGTTGTGGGGGTGTTAATCTTTCCCCACTTATAATCGACTCCCAAACACTTAAAA
ATGAATTTCTAGTAATAAGGTAAACTTCATTTAACTAGTTCTTCCTTCCTATTATGGGTTAATCT
TGTAACTTTAAGCGATGTGTAAACTTAAGGAAGGGTTAGAGAAGATTAAAACTAAGAGGTGGATG
TTTTATATGAGATTTAAGAAAATGAGTTTTTCAATGATATGTTGATATATGAGTTTTTATTGAGG
TTTATTAGTATAATTAACTTGTCAGAGGTGTGAATTAGAGATTAGAAACATTAGACATGATTAAA
AACATGTTAGAAAGAGTGATGA
Found at i:689583 original size:12 final size:12
Alignment explanation
Indices: 689563--689593 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
689553 GGTAAATCTG
*
689563 GGTAATGGTATC
1 GGTACTGGTATC
689575 GGTACTGGTATC
1 GGTACTGGTATC
689587 GGTACTG
1 GGTACTG
689594 ATAGAACAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.19, C:0.13, G:0.35, T:0.32
Consensus pattern (12 bp):
GGTACTGGTATC
Found at i:690328 original size:44 final size:44
Alignment explanation
Indices: 690263--690464 Score: 296
Period size: 44 Copynumber: 4.6 Consensus size: 44
690253 TTAATAGTTA
* * *
690263 AAATGCATAATGGTGCGTTAAGGAATGAAAGGATGCCATAAATG
1 AAATGCATAACGGTGCATTAAGGCATGAAAGGATGCCATAAATG
*
690307 AAATGCATAACGGTGCATTAAGGCATGAAAGGATGCCATAAATT
1 AAATGCATAACGGTGCATTAAGGCATGAAAGGATGCCATAAATG
* *
690351 AAATGCATAATGGTACATTAAGGCATGAAAGGATGCCATAAATG
1 AAATGCATAACGGTGCATTAAGGCATGAAAGGATGCCATAAATG
* * * *
690395 AAATGCATAACAGTGCATTAAGGCATAAAAGGATGACGTAAATG
1 AAATGCATAACGGTGCATTAAGGCATGAAAGGATGCCATAAATG
* *
690439 AAATACATAACAGTGCATTAAGGCAT
1 AAATGCATAACGGTGCATTAAGGCAT
690465 AATGTGTGTT
Statistics
Matches: 144, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 144 1.00
ACGTcount: A:0.43, C:0.12, G:0.23, T:0.22
Consensus pattern (44 bp):
AAATGCATAACGGTGCATTAAGGCATGAAAGGATGCCATAAATG
Found at i:692024 original size:44 final size:44
Alignment explanation
Indices: 691961--692446 Score: 672
Period size: 44 Copynumber: 11.1 Consensus size: 44
691951 TTAATAGTTA
** *
691961 AAATGCATAATGGTGCATTAAGG-ATTGAATTGATGCAATAAATG
1 AAATGCATAATGGTGCATTAAGGCA-TGAAAGGATGCCATAAATG
*
692005 AAATGCATAATAGTGCATTAAGGCATGAAAGGATGCCATAAATG
1 AAATGCATAATGGTGCATTAAGGCATGAAAGGATGCCATAAATG
*
692049 AAATGCATAATGGTGCATTAAGGCAAGAAAGGATGCCATAAATG
1 AAATGCATAATGGTGCATTAAGGCATGAAAGGATGCCATAAATG
* *
692093 AAATTCATAATGGTGCATTAAGGCATGAAAGGATGCCATAAATA
1 AAATGCATAATGGTGCATTAAGGCATGAAAGGATGCCATAAATG
* * *
692137 AAATGCATAATGGTTCAATAAGGTATGAAAGGATGCCATAAATG
1 AAATGCATAATGGTGCATTAAGGCATGAAAGGATGCCATAAATG
* * *
692181 AAATGAATAACGGTGCATTAAGGCATAAAAGGATGCCATAAATG
1 AAATGCATAATGGTGCATTAAGGCATGAAAGGATGCCATAAATG
*
692225 AAATGCATAATGGTGCATTAAGGCATAAAAGGATG-CATAAATG
1 AAATGCATAATGGTGCATTAAGGCATGAAAGGATGCCATAAATG
*
692268 -AATGCATAATGGTGCATTAAGGCATGAAATGATGCCATAAATG
1 AAATGCATAATGGTGCATTAAGGCATGAAAGGATGCCATAAATG
* * * * * *
692311 ACATGAATAACGGTGCATAAAGGCATGAAAGGATTCTATAAATG
1 AAATGCATAATGGTGCATTAAGGCATGAAAGGATGCCATAAATG
* ** * *
692355 AAATGCATAACGGTGCATTAAGGTGTGAAAAGATGTCATAAATG
1 AAATGCATAATGGTGCATTAAGGCATGAAAGGATGCCATAAATG
* * *
692399 AAATGCATAACGGTACATTAAAGGCATAAAAGGATGCCATAAATG
1 AAATGCATAATGGTGCATT-AAGGCATGAAAGGATGCCATAAATG
692444 AAA
1 AAA
692447 ATAATGAATA
Statistics
Matches: 392, Mismatches: 46, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
42 32 0.08
43 16 0.04
44 320 0.82
45 24 0.06
ACGTcount: A:0.43, C:0.10, G:0.23, T:0.23
Consensus pattern (44 bp):
AAATGCATAATGGTGCATTAAGGCATGAAAGGATGCCATAAATG
Found at i:693252 original size:37 final size:37
Alignment explanation
Indices: 693208--693312 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
693198 CCTTTTCGTC
*
693208 CTACTAGGATTTAAACTCCTAAAAATAGGATATAATT
1 CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
* * * *
693245 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
** *
693282 CTACTATTATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTTAAACTCCTAAAAATAGGAT
693313 CCACAAGCAT
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.32
Consensus pattern (37 bp):
CTACTAGGATTTAAACTCCTAAAAATAGGATAGAATT
Found at i:693852 original size:12 final size:12
Alignment explanation
Indices: 693835--693859 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
693825 TGTTTACTTA
693835 TTTACTATATTT
1 TTTACTATATTT
693847 TTTACTATATTT
1 TTTACTATATTT
693859 T
1 T
693860 CCTAACGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTACTATATTT
Found at i:694025 original size:19 final size:19
Alignment explanation
Indices: 693980--694059 Score: 67
Period size: 19 Copynumber: 4.3 Consensus size: 19
693970 TACTATTTAG
* * *
693980 TATTTTATTATATTATACA
1 TATTTTTTTATATTTTATA
**
693999 TACATTTTTATATTTTATA
1 TATTTTTTTATATTTTATA
*
694018 TATTTTTTT-TATTTT-TT
1 TATTTTTTTATATTTTATA
*
694035 TATTTTTTTATACTATTAT-
1 TATTTTTTTATA-TTTTATA
694054 TATTTT
1 TATTTT
694060 CATTATGTTT
Statistics
Matches: 49, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
17 10 0.20
18 8 0.16
19 30 0.61
20 1 0.02
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (19 bp):
TATTTTTTTATATTTTATA
Found at i:694042 original size:8 final size:8
Alignment explanation
Indices: 694002--694045 Score: 52
Period size: 8 Copynumber: 5.2 Consensus size: 8
693992 TTATACATAC
*
694002 ATTTTTAT
1 ATTTTTTT
*
694010 ATTTTATAT
1 ATTTT-TTT
694019 ATTTTTTTT
1 A-TTTTTTT
694028 ATTTTTTT
1 ATTTTTTT
694036 ATTTTTTT
1 ATTTTTTT
694044 AT
1 AT
694046 ACTATTATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
8 22 0.67
9 7 0.21
10 4 0.12
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (8 bp):
ATTTTTTT
Found at i:694056 original size:27 final size:28
Alignment explanation
Indices: 694003--694059 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
693993 TATACATACA
* * *
694003 TTTTTATATTTTATATATTTTTTTTATT
1 TTTTTATATTTTATATACTATTATTATT
*
694031 TTTTTAT-TTTTTTATACTATTATTATT
1 TTTTTATATTTTATATACTATTATTATT
694058 TT
1 TT
694060 CATTATGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (28 bp):
TTTTTATATTTTATATACTATTATTATT
Found at i:699920 original size:18 final size:19
Alignment explanation
Indices: 699893--699929 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
699883 TCAACATCAA
699893 ATATTAGGGCATT-TTTGG
1 ATATTAGGGCATTATTTGG
*
699911 ATATTGGGGCATTATTTGG
1 ATATTAGGGCATTATTTGG
699930 GGATTCAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.22, C:0.05, G:0.30, T:0.43
Consensus pattern (19 bp):
ATATTAGGGCATTATTTGG
Found at i:700568 original size:106 final size:106
Alignment explanation
Indices: 700441--701716 Score: 2027
Period size: 106 Copynumber: 12.0 Consensus size: 106
700431 ATATCGTGCC
* * * *
700441 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
700506 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
700547 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTAGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
700612 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * *
700653 ACTCCAGACAACACAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACAATTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
700718 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * * *
700759 ACTCAAGACAATGCAAGTTCAACTTCATGACGAAGGGACCACTGGTTGTCAATAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
700824 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
700865 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAATAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
700930 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
700971 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTCGTCAACAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
701036 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * *
701077 ACTCCAGACAACGCAAGTTCAACTTCACAACGAAGGGACCGCTGGTTGTCAACAAAAAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
701142 AATTTCAGAGCCAATTTCAACTTCACAGCGAAAGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
701183 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTATCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
701248 AATTTCGGAGCCAATTTCAACTTCACAGTGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
701289 ACTCCAGACAACGCAAGTTCCACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
** *
701354 AATTTCAGAGCCAATTTCAACTTCACAATGAAGGATATTGT
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
701395 ACTCCTGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
701460 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGGTATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
** * * *
701501 ACTTGAGACAACACAAGTTCAACTTCACGACGAAGGGACTGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * *
701566 AATTTCGGAG-CAATTTTCAACTTCACAACAAAGGATATTGG
66 AATTTCAGAGCCAA-TTTCAACTTCACAGCGAAGGATATTGG
* * * * *
701607 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* * *
701672 GATTCCAGAGCCAATTTTAACTTCACGATG-G-AGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCAC-A-GCGAAGGATATTGG
701713 ACTC
1 ACTC
701717 GGAACAATGC
Statistics
Matches: 1093, Mismatches: 73, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
105 3 0.00
106 1086 0.99
107 4 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.22
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:702521 original size:37 final size:37
Alignment explanation
Indices: 702468--702572 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 37
702458 CCTTTTCGTC
*
702468 CTACTAGGATTCAAACTCCTAAAAATAGGATATAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
* * *
702505 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
** * *
702542 CTACTATTATTTAAACTCCTAAAGATAGGAT
1 CTACTAGGATTCAAACTCCTAAAAATAGGAT
702573 CCACAAGCAT
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.31
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAGAATT
Found at i:703030 original size:22 final size:24
Alignment explanation
Indices: 703000--703046 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
702990 TATATATATA
703000 TATTAATTATA-TTTTATTT-ATT
1 TATTAATTATACTTTTATTTCATT
* *
703022 TATTTATTATACTTTTTTTTCATT
1 TATTAATTATACTTTTATTTCATT
703046 T
1 T
703047 TTCTTTGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 10 0.48
23 7 0.33
24 4 0.19
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (24 bp):
TATTAATTATACTTTTATTTCATT
Found at i:703145 original size:13 final size:13
Alignment explanation
Indices: 703127--703152 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
703117 TGTTTACTTA
703127 TTTACTATATTTT
1 TTTACTATATTTT
703140 TTTACTATATTTT
1 TTTACTATATTTT
703153 CCTAACGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTACTATATTTT
Found at i:703325 original size:15 final size:15
Alignment explanation
Indices: 703305--703338 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
703295 TACATTTTTA
703305 TTTTTTTATATATTT
1 TTTTTTTATATATTT
* *
703320 TTTTTTTTTTTATTT
1 TTTTTTTATATATTT
703335 TTTT
1 TTTT
703339 ATACTATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTTTTATATATTT
Found at i:703329 original size:27 final size:28
Alignment explanation
Indices: 703299--703356 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 28
703289 TATACATACA
* *
703299 TTTTTATTTTTTTATA-TATTTTTTTTT
1 TTTTTATTTTTTTATACTATTTATTTAT
703326 TTTTTATTTTTTTATACTATTTATTTAT
1 TTTTTATTTTTTTATACTATTTATTTAT
703354 TTT
1 TTT
703357 CATTATGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
27 16 0.57
28 12 0.43
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (28 bp):
TTTTTATTTTTTTATACTATTTATTTAT
Found at i:703348 original size:17 final size:16
Alignment explanation
Indices: 703301--703356 Score: 59
Period size: 13 Copynumber: 3.7 Consensus size: 16
703291 TACATACATT
703301 TTTATTTTTTTATATA
1 TTTATTTTTTTATATA
703317 -TT-TTTTTTT-T-T-
1 TTTATTTTTTTATATA
703328 TTTATTTTTTTATACTA
1 TTTATTTTTTTATA-TA
703345 TTTATTTATTTT
1 TTTATTT-TTTT
703357 CATTATGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
12 3 0.09
13 8 0.24
14 8 0.24
15 2 0.06
16 1 0.03
17 7 0.21
18 4 0.12
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTATTTTTTTATATA
Found at i:706279 original size:11 final size:11
Alignment explanation
Indices: 706263--706305 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
706253 GGATTCTTCT
706263 TTTTTCTTTTA
1 TTTTTCTTTTA
706274 TTTTTCTATTTA
1 TTTTTCT-TTTA
*
706286 TTTTTCATTT-
1 TTTTTCTTTTA
*
706296 TTTTCCTTTT
1 TTTTTCTTTT
706306 TCAACAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 8 0.29
11 10 0.36
12 10 0.36
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTTCTTTTA
Found at i:706291 original size:12 final size:12
Alignment explanation
Indices: 706263--706299 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
706253 GGATTCTTCT
706263 TTTTTCT-TTTA
1 TTTTTCTATTTA
706274 TTTTTCTATTTA
1 TTTTTCTATTTA
706286 TTTTTC-ATTT-
1 TTTTTCTATTTA
706296 TTTT
1 TTTT
706300 CCTTTTTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 4 0.16
11 11 0.44
12 10 0.40
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTTTCTATTTA
Found at i:706988 original size:17 final size:18
Alignment explanation
Indices: 706968--707014 Score: 71
Period size: 17 Copynumber: 2.7 Consensus size: 18
706958 TTTTCTTTCA
706968 TTTTCTCTTTTTTTCTT-
1 TTTTCTCTTTTTTTCTTG
706985 TTTTCTC-TTTTTTCTTG
1 TTTTCTCTTTTTTTCTTG
*
707002 TTTTTTCTTTTTT
1 TTTTCTCTTTTTT
707015 AAGCGTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 9 0.33
17 13 0.48
18 5 0.19
ACGTcount: A:0.00, C:0.15, G:0.02, T:0.83
Consensus pattern (18 bp):
TTTTCTCTTTTTTTCTTG
Found at i:713865 original size:44 final size:44
Alignment explanation
Indices: 713810--714302 Score: 675
Period size: 44 Copynumber: 11.2 Consensus size: 44
713800 AAATGAATTA
* * * *
713810 ATAAATAAAATACATAATGGTGCATTAAAGCATGAAATGATGCC
1 ATAAATGAAATGCATAATGGTGCATTAAGGCATGAAAGGATGCC
* ** * * *
713854 ATAAATGAAATACATAACAGTGTATTAAGGCATGAAATGATACC
1 ATAAATGAAATGCATAATGGTGCATTAAGGCATGAAAGGATGCC
* **
713898 ATAAATGAAATGCATAACGGTGCATTAAGGCATGAAAGGATATC
1 ATAAATGAAATGCATAATGGTGCATTAAGGCATGAAAGGATGCC
* * * *
713942 ATAAATAAAACGCATACTGCTGCATTAAGGCATGAAAGGATGCC
1 ATAAATGAAATGCATAATGGTGCATTAAGGCATGAAAGGATGCC
* * * *
713986 ATAAATGAGATGCATAATGGTACATTAAGGCATTAAAGGATACC
1 ATAAATGAAATGCATAATGGTGCATTAAGGCATGAAAGGATGCC
714030 ATAAATGAAATGCATAATGGTGCATTAAGGCATGAAAGGATGCC
1 ATAAATGAAATGCATAATGGTGCATTAAGGCATGAAAGGATGCC
714074 ATAAATGAAATGCATAATGGTGCATTAAGGCATGAAAGGATGCC
1 ATAAATGAAATGCATAATGGTGCATTAAGGCATGAAAGGATGCC
*
714118 ATAAATGAAATACATAATGGTGCATTAAGGCATGAAAGGATGCC
1 ATAAATGAAATGCATAATGGTGCATTAAGGCATGAAAGGATGCC
** *
714162 ATAAATGAAATGCATAACAGTGCATTAAGTCATG-AAGGATGCC
1 ATAAATGAAATGCATAATGGTGCATTAAGGCATGAAAGGATGCC
* *
714205 ATAAATGAAATGCATAACGGTGCATTAA-GCGTGAAAGGATGCC
1 ATAAATGAAATGCATAATGGTGCATTAAGGCATGAAAGGATGCC
* * * *
714248 ATAAATGTAATGCATAACGGTGCATAAAAGGCATGAAAGGATGTC
1 ATAAATGAAATGCATAATGGTGCAT-TAAGGCATGAAAGGATGCC
*
714293 TTAAATGAAA
1 ATAAATGAAA
714303 ATAATGAATA
Statistics
Matches: 402, Mismatches: 44, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
42 3 0.01
43 69 0.17
44 309 0.77
45 21 0.05
ACGTcount: A:0.43, C:0.12, G:0.22, T:0.23
Consensus pattern (44 bp):
ATAAATGAAATGCATAATGGTGCATTAAGGCATGAAAGGATGCC
Found at i:718866 original size:17 final size:17
Alignment explanation
Indices: 718846--718892 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
718836 ATTTTCTTTC
718846 TTTTTATCTTTTTT-TTG
1 TTTTT-TCTTTTTTCTTG
*
718863 TTTTCTCTTTTTTCTTG
1 TTTTTTCTTTTTTCTTG
718880 TTTTTTCTTTTTT
1 TTTTTTCTTTTTT
718893 AAGCGTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 8 0.30
17 19 0.70
ACGTcount: A:0.02, C:0.11, G:0.04, T:0.83
Consensus pattern (17 bp):
TTTTTTCTTTTTTCTTG
Found at i:718873 original size:24 final size:24
Alignment explanation
Indices: 718837--718890 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
718827 TGAACCCATA
*
718837 TTTTC-TTTCT-TTTTATCTT-TT
1 TTTTCTTTTCTCTTTTTTCTTGTT
*
718858 TTTTGTTTTCTCTTTTTTCTTGTT
1 TTTTCTTTTCTCTTTTTTCTTGTT
718882 TTTTCTTTT
1 TTTTCTTTT
718891 TTAAGCGTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 4 0.15
22 5 0.19
23 8 0.30
24 10 0.37
ACGTcount: A:0.02, C:0.13, G:0.04, T:0.81
Consensus pattern (24 bp):
TTTTCTTTTCTCTTTTTTCTTGTT
Found at i:726818 original size:18 final size:18
Alignment explanation
Indices: 726776--726819 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 18
726766 ATATTAATAG
*
726776 TATACT-TATTAAAACTA
1 TATACTATATTAAAACCA
726793 TAT-C-ATATTAAAACCA
1 TATACTATATTAAAACCA
726809 TATACTATATT
1 TATACTATATT
726820 CACATTGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
16 14 0.61
17 4 0.17
18 5 0.22
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.41
Consensus pattern (18 bp):
TATACTATATTAAAACCA
Found at i:731734 original size:2 final size:2
Alignment explanation
Indices: 731727--731753 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
731717 CCAAACTAGA
731727 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
731754 CATCAGTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:732499 original size:766 final size:766
Alignment explanation
Indices: 731026--732545 Score: 2885
Period size: 766 Copynumber: 2.0 Consensus size: 766
731016 TATATTTATA
731026 ATGTTATTTTTTAAAGAAGATACTTAAGGACAAAGAATTTATGAAAATATAAATGAGTCAAGTAA
1 ATGTTATTTTTTAAAGAAGATACTTAAGGACAAAGAATTTATGAAAATATAAATGAGTCAAGTAA
731091 CTAATGAAAAAAAAGAATTTACGAAGAATTACCGTTAGAGGACCGAAATGAATAATACAAAGTTC
66 CTAATGAAAAAAAAGAATTTACGAAGAATTACCGTTAGAGGACCGAAATGAATAATACAAAGTTC
731156 AGGGGCTTCGATGAAAAAATAGGAATTTTTTTGTAATTAAAGAATTAAAGTTGCACATGTATTCT
131 AGGGGCTTCGATGAAAAAATAGGAATTTTTTTGTAATTAAAGAATTAAAGTTGCACATGTATTCT
731221 ACATCGATTCAGGTGTTTGTGGTTTAAATTTGATTAAAAATGGACTAAGATGAAGGAGGAACCGA
196 ACATCGATTCAGGTGTTTGTGGTTTAAATTTGATTAAAAATGGACTAAGATGAAGGAGGAACCGA
731286 AGAAACAAGAAAATTAGAACCCAAATCACAAAACAATTAAATTACTTAACTAAACCTAAAGATCA
261 AGAAACAAGAAAATTAGAACCCAAATCACAAAACAATTAAATTACTTAACTAAACCTAAAGATCA
731351 AAAATGATTATAAATTTTAATATTCAATTTTTCTATTGTTCAAACTCCATTCGAATTTGAAATTT
326 AAAATGATTATAAATTTTAATATTCAATTTTTCTATTGTTCAAACTCCATTCGAATTTGAAATTT
731416 AGGTTACTAATCCGAGTTATCTCGAATATTTCGAATAGTCCAAACGAATCAATTTTACTCATCTT
391 AGGTTACTAATCCGAGTTATCTCGAATATTTCGAATAGTCCAAACGAATCAATTTTACTCATCTT
*
731481 TAATTTGAAGACTCTCTATGTAACCTTCAAAATTTCTCCCCATATTTACAGTCTCATCCACTTCT
456 TAATCTGAAGACTCTCTATGTAACCTTCAAAATTTCTCCCCATATTTACAGTCTCATCCACTTCT
731546 CATTGCACTTAAAAAGCTTAATTGTTTTTGCTAAGCTGATAATCAACAACAGGATCATGCAAAAG
521 CATTGCACTTAAAAAGCTTAATTGTTTTTGCTAAGCTGATAATCAACAACAGGATCATGCAAAAG
731611 TATATGAAGATATATATAGGCCCATCTCCATGATTAAAATAGGAACATATCAATAAAAAAGATGT
586 TATATGAAGATATATATAGGCCCATCTCCATGATTAAAATAGGAACATATCAATAAAAAAGATGT
731676 GCAAGTCTCTGAATTGAAACCCTTTTTTATACTGTATCTTACCAAACTAGAATATATATATATAT
651 GCAAGTCTCTGAATTGAAACCCTTTTTTATACTGTATCTTACCAAACTAGAATATATATATATAT
731741 ATATATATATATACATCAGTAAAATCCTGATAAAATATACTGGTGTAGGCT
716 ATATATATATATACATCAGTAAAATCCTGATAAAATATACTGGTGTAGGCT
731792 ATGTTATTTTTTAAAGAAGATACTTAAGGACAAAGAATTTATGAAAATATAAATGAGTCAAGTAA
1 ATGTTATTTTTTAAAGAAGATACTTAAGGACAAAGAATTTATGAAAATATAAATGAGTCAAGTAA
*
731857 CTAATGAAAAAAAAGAATTTACGAAGAATTACCGTTAGAGGATCGAAATGAATAATACAAAGTTC
66 CTAATGAAAAAAAAGAATTTACGAAGAATTACCGTTAGAGGACCGAAATGAATAATACAAAGTTC
*
731922 AGGGGTTTCGATGAAAAAATAGGAATTTTTTTGTAATTAAAGAATTAAAGTTGCACATGTATTCT
131 AGGGGCTTCGATGAAAAAATAGGAATTTTTTTGTAATTAAAGAATTAAAGTTGCACATGTATTCT
731987 ACATCGATTCAGGTGTTTGTGGTTTAAATTTGATTAAAAATGGACTAAGATGAAGGAGGAACCGA
196 ACATCGATTCAGGTGTTTGTGGTTTAAATTTGATTAAAAATGGACTAAGATGAAGGAGGAACCGA
732052 AGAAA-ACAGAAAATTAGAACCCAAATCAC-AAACAATTAAATTACTTAACTAAACCTAAAGATC
261 AGAAACA-AGAAAATTAGAACCCAAATCACAAAACAATTAAATTACTTAACTAAACCTAAAGATC
732115 AAAAATGATTA-AAA-TTTAATATTCAATTTTTCTATTGTTCAAACTCCATTCGAATTTGAAATT
325 AAAAATGATTATAAATTTTAATATTCAATTTTTCTATTGTTCAAACTCCATTCGAATTTGAAATT
732178 TAGGTTACTAAT-CG-GTTATCTCGAATATTTCGAATAGTCCAAACGAATCAA-TTTACTCATCT
390 TAGGTTACTAATCCGAGTTATCTCGAATATTTCGAATAGTCCAAACGAATCAATTTTACTCATCT
732240 TTAATCTGAAGACTCTCTATGTAACCTTCAAAATTTCTCCCCATATTTACAGTCTCATCCACTTC
455 TTAATCTGAAGACTCTCTATGTAACCTTCAAAATTTCTCCCCATATTTACAGTCTCATCCACTTC
732305 TCATTGCACTTAAAAAGCTTAATTGTTTTTGCTAAGCTGATAATCAACAACAGGATCATGCAAAA
520 TCATTGCACTTAAAAAGCTTAATTGTTTTTGCTAAGCTGATAATCAACAACAGGATCATGCAAAA
732370 GTATATGAAGATATATATAGGCCCATCTCCATGATTAAAATAGGAACATATCAATAAAAAAGATG
585 GTATATGAAGATATATATAGGCCCATCTCCATGATTAAAATAGGAACATATCAATAAAAAAGATG
732435 TGCAAGTCTCTGAATTGAAACCCTTTTTTATACTGTATCTTACCAAACTAG---------A-ATA
650 TGCAAGTCTCTGAATTGAAACCCTTTTTTATACTGTATCTTACCAAACTAGAATATATATATATA
732490 TATATATATATATACATCAGTAAAATCCTGATAAAATATACTGGTGTAGGCT
715 TATATATATATATACATCAGTAAAATCCTGATAAAATATACTGGTGTAGGCT
732542 ATGT
1 ATGT
732546 CTCACATGTT
Statistics
Matches: 750, Mismatches: 3, Indels: 18
0.97 0.00 0.02
Matches are distributed among these distances:
750 59 0.08
751 1 0.00
760 256 0.34
761 37 0.05
762 2 0.00
763 61 0.08
764 3 0.00
765 46 0.06
766 285 0.38
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (766 bp):
ATGTTATTTTTTAAAGAAGATACTTAAGGACAAAGAATTTATGAAAATATAAATGAGTCAAGTAA
CTAATGAAAAAAAAGAATTTACGAAGAATTACCGTTAGAGGACCGAAATGAATAATACAAAGTTC
AGGGGCTTCGATGAAAAAATAGGAATTTTTTTGTAATTAAAGAATTAAAGTTGCACATGTATTCT
ACATCGATTCAGGTGTTTGTGGTTTAAATTTGATTAAAAATGGACTAAGATGAAGGAGGAACCGA
AGAAACAAGAAAATTAGAACCCAAATCACAAAACAATTAAATTACTTAACTAAACCTAAAGATCA
AAAATGATTATAAATTTTAATATTCAATTTTTCTATTGTTCAAACTCCATTCGAATTTGAAATTT
AGGTTACTAATCCGAGTTATCTCGAATATTTCGAATAGTCCAAACGAATCAATTTTACTCATCTT
TAATCTGAAGACTCTCTATGTAACCTTCAAAATTTCTCCCCATATTTACAGTCTCATCCACTTCT
CATTGCACTTAAAAAGCTTAATTGTTTTTGCTAAGCTGATAATCAACAACAGGATCATGCAAAAG
TATATGAAGATATATATAGGCCCATCTCCATGATTAAAATAGGAACATATCAATAAAAAAGATGT
GCAAGTCTCTGAATTGAAACCCTTTTTTATACTGTATCTTACCAAACTAGAATATATATATATAT
ATATATATATATACATCAGTAAAATCCTGATAAAATATACTGGTGTAGGCT
Found at i:734553 original size:32 final size:32
Alignment explanation
Indices: 734517--734582 Score: 114
Period size: 32 Copynumber: 2.1 Consensus size: 32
734507 CTTCCTTATC
*
734517 TTAACCATAATTAATTAAATATTGATTAAGTA
1 TTAACCATAATTAATTAAATATTGATTAAATA
*
734549 TTAACCGTAATTAATTAAATATTGATTAAATA
1 TTAACCATAATTAATTAAATATTGATTAAATA
734581 TT
1 TT
734583 GAAAATACTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.42
Consensus pattern (32 bp):
TTAACCATAATTAATTAAATATTGATTAAATA
Found at i:735897 original size:68 final size:68
Alignment explanation
Indices: 735788--736034 Score: 424
Period size: 68 Copynumber: 3.6 Consensus size: 68
735778 TAGAAGTTAG
* *
735788 TTGTGATGCTATTCTATGTTTCTTAGCAATGTGGGATTGTTTTGTTCTCATATTTTC-CTTTTAG
1 TTGTGATGCTCTTCTATGTTTCTTAGCAATGTGAGATTGTTTTGTTCTCATATTTTCTC-TTTAG
735852 ACTT
65 ACTT
*
735856 TTGTGATGCTCTTCTATGTTTCTTAGCAATGTGGGATTGTTTTGTTCTCATATTTTCTCTTTAGA
1 TTGTGATGCTCTTCTATGTTTCTTAGCAATGTGAGATTGTTTTGTTCTCATATTTTCTCTTTAGA
735921 CTT
66 CTT
*
735924 TTGTGATGCTCTTCTATGTTTCTTAGCCATGTGAGATTGTTTTGTTCTCATATTTTCTCTTTAGA
1 TTGTGATGCTCTTCTATGTTTCTTAGCAATGTGAGATTGTTTTGTTCTCATATTTTCTCTTTAGA
735989 CTT
66 CTT
* *
735992 TTGAGATGCTCTTCTATGTTTCTTAGCCATGTGAGATTGTTTT
1 TTGTGATGCTCTTCTATGTTTCTTAGCAATGTGAGATTGTTTT
736035 AAAAAAAAAA
Statistics
Matches: 174, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
68 173 0.99
69 1 0.01
ACGTcount: A:0.15, C:0.15, G:0.18, T:0.52
Consensus pattern (68 bp):
TTGTGATGCTCTTCTATGTTTCTTAGCAATGTGAGATTGTTTTGTTCTCATATTTTCTCTTTAGA
CTT
Found at i:737396 original size:21 final size:21
Alignment explanation
Indices: 737370--737641 Score: 267
Period size: 21 Copynumber: 13.4 Consensus size: 21
737360 TTTCCAAATC
737370 CGTTGCGATAGTCCAAGTTCA
1 CGTTGCGATAGTCCAAGTTCA
*
737391 CGTTGCGATAGTCGAAGTTCA
1 CGTTGCGATAGTCCAAGTTCA
** * *
737412 CGTTGCGATTTTCTAAATT--
1 CGTTGCGATAGTCCAAGTTCA
737431 CGTTGCGATAGTCCAAGTTCA
1 CGTTGCGATAGTCCAAGTTCA
* *
737452 CGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCA
** *
737473 CGTTGCGATTTTCCAAATT--
1 CGTTGCGATAGTCCAAGTTCA
737492 CGTTGCGATAGTCCAAGTTCA
1 CGTTGCGATAGTCCAAGTTCA
* *
737513 CGTTGCGATAG-CGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCA
* * *
737533 CATTGCGAT-TTCCAAATT--
1 CGTTGCGATAGTCCAAGTTCA
737551 CGTTGCGATAGTCCAAGTTCA
1 CGTTGCGATAGTCCAAGTTCA
* *
737572 CGTTGCGATAGTCGAAGTTCG
1 CGTTGCGATAGTCCAAGTTCA
* ** *
737593 CATTGCGATTTTCCAAATT--
1 CGTTGCGATAGTCCAAGTTCA
* *
737612 CGTTGCGATAGTCCAAATTCG
1 CGTTGCGATAGTCCAAGTTCA
737633 CGTTGCGAT
1 CGTTGCGAT
737642 TTTCCAAAAT
Statistics
Matches: 204, Mismatches: 37, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
18 8 0.04
19 54 0.26
20 20 0.10
21 122 0.60
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (21 bp):
CGTTGCGATAGTCCAAGTTCA
Found at i:737399 original size:40 final size:42
Alignment explanation
Indices: 737355--737648 Score: 234
Period size: 40 Copynumber: 7.3 Consensus size: 42
737345 AATTTGCAAC
*
737355 GCGATTTTCCAA-ATC-CGTTGCGATAGTCCAAGTTCACGTT
1 GCGATTTTCCAAGATCACGTTGCGATAGTCCAAGTTCGCGTT
** * * ** * *
737395 GCGATAGTCGAAGTTCACGTTGCGATTTTCTAAATT--CGTT
1 GCGATTTTCCAAGATCACGTTGCGATAGTCCAAGTTCGCGTT
** * *
737435 GCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCGCGTT
1 GCGATTTTCCAAGATCACGTTGCGATAGTCCAAGTTCGCGTT
* *
737477 GCGATTTTCCAA-AT-TCGTTGCGATAGTCCAAGTTCACGTT
1 GCGATTTTCCAAGATCACGTTGCGATAGTCCAAGTTCGCGTT
** * * * * * *
737517 GCGA-TAGCGAAGTTCGCATTGCGAT-TTCCAAATT--CGTT
1 GCGATTTTCCAAGATCACGTTGCGATAGTCCAAGTTCGCGTT
** * * *
737555 GCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCGCATT
1 GCGATTTTCCAAGATCACGTTGCGATAGTCCAAGTTCGCGTT
* *
737597 GCGATTTTCCAA-AT-TCGTTGCGATAGTCCAAATTCGCGTT
1 GCGATTTTCCAAGATCACGTTGCGATAGTCCAAGTTCGCGTT
737637 GCGATTTTCCAA
1 GCGATTTTCCAA
737649 AATCGCAACG
Statistics
Matches: 200, Mismatches: 44, Indels: 20
0.76 0.17 0.08
Matches are distributed among these distances:
38 8 0.04
39 19 0.09
40 119 0.60
41 12 0.06
42 42 0.21
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.33
Consensus pattern (42 bp):
GCGATTTTCCAAGATCACGTTGCGATAGTCCAAGTTCGCGTT
Found at i:737591 original size:120 final size:122
Alignment explanation
Indices: 737355--737641 Score: 497
Period size: 120 Copynumber: 2.4 Consensus size: 122
737345 AATTTGCAAC
* *
737355 GCGATTTTCCAAATCCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCACGTTGCGA
1 GCGATTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCACATTGCGA
* *
737420 TTTTCTAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCGCGTT
66 TTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCGCATT
*
737477 GCGATTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAG-CGAAGTTCGCATTGCGA
1 GCGATTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCACATTGCGA
737541 -TTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCGCATT
66 TTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCGCATT
* *
737597 GCGATTTTCCAAATTCGTTGCGATAGTCCAAATTCGCGTTGCGAT
1 GCGATTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGAT
737642 TTTCCAAAAT
Statistics
Matches: 158, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 97 0.61
121 15 0.09
122 46 0.29
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (122 bp):
GCGATTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCACATTGCGA
TTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCGCATT
Found at i:737654 original size:21 final size:21
Alignment explanation
Indices: 737590--737654 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 21
737580 TAGTCGAAGT
*
737590 TCGCATTGCGATTTTCC-AAA
1 TCGCGTTGCGATTTTCCAAAA
* ** *
737610 T-TCGTTGCGATAGTCCAAAT
1 TCGCGTTGCGATTTTCCAAAA
737630 TCGCGTTGCGATTTTCCAAAA
1 TCGCGTTGCGATTTTCCAAAA
737651 TCGC
1 TCGC
737655 AACGACTGGT
Statistics
Matches: 34, Mismatches: 9, Indels: 3
0.74 0.20 0.07
Matches are distributed among these distances:
19 11 0.32
20 4 0.12
21 19 0.56
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (21 bp):
TCGCGTTGCGATTTTCCAAAA
Found at i:737655 original size:61 final size:61
Alignment explanation
Indices: 737355--737641 Score: 497
Period size: 61 Copynumber: 4.7 Consensus size: 61
737345 AATTTGCAAC
* * *
737355 GCGATTTTCCAAATCCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCACGTT
1 GCGATTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCGCATT
* *
737416 GCGATTTTCTAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCGCGTT
1 GCGATTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCGCATT
737477 GCGATTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAG-CGAAGTTCGCATT
1 GCGATTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCGCATT
737537 GCGA-TTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCGCATT
1 GCGATTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCGCATT
* *
737597 GCGATTTTCCAAATTCGTTGCGATAGTCCAAATTCGCGTTGCGAT
1 GCGATTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGAT
737642 TTTCCAAAAT
Statistics
Matches: 217, Mismatches: 7, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
59 42 0.19
60 33 0.15
61 142 0.65
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (61 bp):
GCGATTTTCCAAATTCGTTGCGATAGTCCAAGTTCACGTTGCGATAGTCGAAGTTCGCATT
Found at i:737745 original size:6 final size:6
Alignment explanation
Indices: 737734--737764 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
737724 CGAAGACACG
737734 TATTAC TATTAC TATTAC TATTAC TATTAC T
1 TATTAC TATTAC TATTAC TATTAC TATTAC T
737765 TACCACGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (6 bp):
TATTAC
Found at i:738150 original size:19 final size:19
Alignment explanation
Indices: 738110--738149 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
738100 ACTCTCGCAA
*
738110 TTTAACTATCGCAACACAT
1 TTTAACTATCACAACACAT
738129 TTTAACTATCACAACAC-T
1 TTTAACTATCACAACACAT
738147 TTT
1 TTT
738150 TTCAAAATCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.38
Consensus pattern (19 bp):
TTTAACTATCACAACACAT
Found at i:742249 original size:104 final size:107
Alignment explanation
Indices: 742082--742281 Score: 230
Period size: 104 Copynumber: 1.9 Consensus size: 107
742072 TCCCTGAGAA
* * *** *
742082 TATCGATACTCTCCCTCTTGGTTATCGATACTTCTTTGAGTACCGACACCAACATTTCCTTCGAT
1 TATCAATACTCTACCTCTTGGTTATCGATACTTCCAAGAGTACCGACACCAAAATTTCCTTCGAT
*
742147 ATTT-TGAAAAAATATCTT-AGTATCGATACCCCTATAGGGAG
66 ATTTCTGAAAAAA-ACCTTGAGTATCGATACCCCTATAGGGAG
* * *
742188 TATCAATACTCTACC-CTTGG-TATCGATACTTCCAAGAGTACTGATACCAAAATTGT-TTTCGA
1 TATCAATACTCTACCTCTTGGTTATCGATACTTCCAAGAGTACCGACACCAAAATT-TCCTTCGA
* **
742250 TGTTTCTGATCAAAACCTTGAGTATCGATACC
65 TATTTCTGAAAAAAACCTTGAGTATCGATACC
742282 ACCTGAGCTA
Statistics
Matches: 78, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
104 41 0.53
105 24 0.31
106 13 0.17
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.34
Consensus pattern (107 bp):
TATCAATACTCTACCTCTTGGTTATCGATACTTCCAAGAGTACCGACACCAAAATTTCCTTCGAT
ATTTCTGAAAAAAACCTTGAGTATCGATACCCCTATAGGGAG
Found at i:745085 original size:17 final size:17
Alignment explanation
Indices: 745065--745100 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
745055 TCCTAATAAG
745065 TAGTGTCTCCAAATTTT
1 TAGTGTCTCCAAATTTT
745082 TAGTGTCTCCAAATTTT
1 TAGTGTCTCCAAATTTT
745099 TA
1 TA
745101 AGGCAAAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.47
Consensus pattern (17 bp):
TAGTGTCTCCAAATTTT
Found at i:751142 original size:15 final size:16
Alignment explanation
Indices: 751122--751151 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
751112 GTGAGTTCTG
751122 TAGTTTA-GGGACATC
1 TAGTTTAGGGGACATC
751137 TAGTTTAGGGGACAT
1 TAGTTTAGGGGACAT
751152 AAACCATCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.27, C:0.10, G:0.30, T:0.33
Consensus pattern (16 bp):
TAGTTTAGGGGACATC
Found at i:751965 original size:21 final size:20
Alignment explanation
Indices: 751941--751979 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
751931 TTCGATCTTT
*
751941 ATTACTCATTTATTTTATTAA
1 ATTACTCA-TAATTTTATTAA
*
751962 ATTAGTCATAATTTTATT
1 ATTACTCATAATTTTATT
751980 TTAATTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 9 0.56
21 7 0.44
ACGTcount: A:0.33, C:0.08, G:0.03, T:0.56
Consensus pattern (20 bp):
ATTACTCATAATTTTATTAA
Found at i:755219 original size:14 final size:14
Alignment explanation
Indices: 755200--755227 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
755190 GTTTTGATAA
755200 AGCTCGGTTGGATT
1 AGCTCGGTTGGATT
755214 AGCTCGGTTGGATT
1 AGCTCGGTTGGATT
755228 GGGCCATAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.36, T:0.36
Consensus pattern (14 bp):
AGCTCGGTTGGATT
Found at i:760642 original size:9 final size:9
Alignment explanation
Indices: 760639--760671 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
760629 ATTTTGGTTT
760639 TTTTTTTTG
1 TTTTTTTTG
760648 -TTTTTTTG
1 TTTTTTTTG
760656 TTTTTTTTG
1 TTTTTTTTG
760665 TTTTTTT
1 TTTTTTT
760672 AGAAAACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:760659 original size:17 final size:17
Alignment explanation
Indices: 760639--760671 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
760629 ATTTTGGTTT
760639 TTTTTTTTGTTTTTTTG
1 TTTTTTTTGTTTTTTTG
760656 TTTTTTTTGTTTTTTT
1 TTTTTTTTGTTTTTTT
760672 AGAAAACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (17 bp):
TTTTTTTTGTTTTTTTG
Found at i:760671 original size:8 final size:8
Alignment explanation
Indices: 760636--760671 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
760626 GAAATTTTGG
760636 TTTT-TTT
1 TTTTGTTT
760643 TTTTGTTT
1 TTTTGTTT
760651 TTTTGTTTT
1 TTTTG-TTT
760660 TTTTGTTT
1 TTTTGTTT
760668 TTTT
1 TTTT
760672 AGAAAACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 4 0.15
8 15 0.56
9 8 0.30
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (8 bp):
TTTTGTTT
Found at i:769493 original size:29 final size:29
Alignment explanation
Indices: 769461--769523 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
769451 CATTTTACAG
769461 AAATAACACCCT-TTTTAAATTAATTACTA
1 AAATAACA-CCTATTTTAAATTAATTACTA
* *
769490 AAATAGCACCTATTTTGAATTAATTACTA
1 AAATAACACCTATTTTAAATTAATTACTA
769519 AAATA
1 AAATA
769524 GTACCCGGTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 3 0.10
29 28 0.90
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.37
Consensus pattern (29 bp):
AAATAACACCTATTTTAAATTAATTACTA
Found at i:769554 original size:12 final size:12
Alignment explanation
Indices: 769537--769587 Score: 79
Period size: 12 Copynumber: 4.4 Consensus size: 12
769527 CCCGGTCAAA
769537 GGTCAACGGTCG
1 GGTCAACGGTCG
769549 GGTCAACGGTCG
1 GGTCAACGGTCG
*
769561 GGTC--GGGTCG
1 GGTCAACGGTCG
769571 GGTCAACGGTCG
1 GGTCAACGGTCG
769583 GGTCA
1 GGTCA
769588 GGTCAGTCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
10 9 0.26
12 26 0.74
ACGTcount: A:0.14, C:0.24, G:0.45, T:0.18
Consensus pattern (12 bp):
GGTCAACGGTCG
Found at i:769572 original size:22 final size:22
Alignment explanation
Indices: 769544--769612 Score: 95
Period size: 22 Copynumber: 3.1 Consensus size: 22
769534 AAAGGTCAAC
769544 GGTCGGGTCAACGGTCGGGTCG
1 GGTCGGGTCAACGGTCGGGTCG
*
769566 GGTCGGGTCAACGGTCGGGTCA
1 GGTCGGGTCAACGGTCGGGTCG
* *
769588 GGTC-AGTCAACGGGTCGGATCG
1 GGTCGGGTCAAC-GGTCGGGTCG
769610 GGT
1 GGT
769613 TGGAATCGGT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
21 6 0.14
22 36 0.86
ACGTcount: A:0.13, C:0.22, G:0.46, T:0.19
Consensus pattern (22 bp):
GGTCGGGTCAACGGTCGGGTCG
Found at i:770091 original size:12 final size:12
Alignment explanation
Indices: 770074--770098 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
770064 CGATGACGAA
770074 CGATGGTGGTTT
1 CGATGGTGGTTT
770086 CGATGGTGGTTT
1 CGATGGTGGTTT
770098 C
1 C
770099 AAACGACGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.12, G:0.40, T:0.40
Consensus pattern (12 bp):
CGATGGTGGTTT
Found at i:770769 original size:82 final size:82
Alignment explanation
Indices: 770369--771041 Score: 858
Period size: 82 Copynumber: 8.4 Consensus size: 82
770359 TACATCATTG
* *
770369 AAAAGTTGCAGAAGATGATAATACACCACTATTTCACCCGTTTACTGAAAAGTTGTTTAAATTAT
1 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTAT
* * * *
770434 -CTTTGAAT-AACTTTG
66 GCATTGAATGACCTCTA
770449 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCG-TTT-TGAAAAGTTGTTTAAATTAT
1 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTAT
770512 GCATTGAATGACCTCTA
66 GCATTGAATGACCTCTA
* * **
770529 AAAAGTTACAGAAAATGATAATGCACCACTATTTCACATGTTTTCTGAAAAGTTGTTTAAATTAT
1 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTAT
* *
770594 ACATTTAATGACCTCT-
66 GCATTGAATGACCTCTA
* *
770610 -AAA----CAGAAGATGAT-A--CACTACTATTTCACCCCGTTTTCTAAAAAGTTGTTT-AATT-
1 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCA-CCCGTTTTCTGAAAAGTTGTTTAAATTA
*
770665 TGCACTGAATGACCTCTA
65 TGCATTGAATGACCTCTA
* *
770683 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACTCGTTTTCTGAAAATTTGTTTAAATTAT
1 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTAT
* *
770748 GCATTGAATAACCTCTG
66 GCATTGAATGACCTCTA
** ** * *
770765 AAAAGTTGTTGAAGATGATAATGCACCACTATTTCACCATTTTTCTGAAACGTTGTTTAAATTGT
1 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTAT
* *
770830 GCATTG-ATGGCATCTA
66 GCATTGAATGACCTCTA
* * *
770846 AAAAGTTACAGAAGATGATAATGCACCATTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTGT
1 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTAT
770911 GCATTGAATGACCTCTA
66 GCATTGAATGACCTCTA
* * * * * * *
770928 AAAAGTTGCAGAAGATGATAATGCACTACTATTTTACTCGTTTTCTAAAAAGTTATTTAACTTGT
1 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTAT
*
770993 GCATTGAATGACCTCTG
66 GCATTGAATGACCTCTA
*
771010 AAAAGTTGTAGAAGATGATAATG-ACCTACTAT
1 AAAAGTTGCAGAAGATGATAATGCACC-ACTAT
771042 GATGACATTT
Statistics
Matches: 516, Mismatches: 59, Indels: 34
0.85 0.10 0.06
Matches are distributed among these distances:
72 14 0.03
73 16 0.03
74 22 0.04
75 1 0.00
76 10 0.02
78 31 0.06
79 10 0.02
80 101 0.20
81 91 0.18
82 220 0.43
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (82 bp):
AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTAT
GCATTGAATGACCTCTA
Found at i:770873 original size:163 final size:163
Alignment explanation
Indices: 770369--771041 Score: 858
Period size: 163 Copynumber: 4.2 Consensus size: 163
770359 TACATCATTG
* *
770369 AAAAGTTGCAGAAGATGATAATACACCACTATTTCACCCGTTTACTGAAAAGTTGTTTAAATTAT
1 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTAT
* * *
770434 -CTTTGAATAA-CTTTGAAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCG-TTT-TGA
66 GCATTGAATAACCTCTGAAAAGTTGCAGAAGATGATAATGCACCACTATTTCA-CCGTTTTCTAA
*
770495 AAAGTTGTTTAAATTATGCATTGAATGACCTCTA
130 AAAGTTGTTTAAATTGTGCATTGAATGACCTCTA
* * **
770529 AAAAGTTACAGAAAATGATAATGCACCACTATTTCACATGTTTTCTGAAAAGTTGTTTAAATTAT
1 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTAT
* * * *
770594 ACATTTAATGACCTCT--AAA----CAGAAGATGAT-A--CACTACTATTTCACCCCGTTTTCTA
66 GCATTGAATAACCTCTGAAAAGTTGCAGAAGATGATAATGCACCACTATTTCA--CCGTTTTCTA
*
770650 AAAAGTTGTTT-AATT-TGCACTGAATGACCTCTA
129 AAAAGTTGTTTAAATTGTGCATTGAATGACCTCTA
* *
770683 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACTCGTTTTCTGAAAATTTGTTTAAATTAT
1 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTAT
** * *
770748 GCATTGAATAACCTCTGAAAAGTTGTTGAAGATGATAATGCACCACTATTTCACCATTTTTCTGA
66 GCATTGAATAACCTCTGAAAAGTTGCAGAAGATGATAATGCACCACTATTTCACC-GTTTTCTAA
* * *
770813 AACGTTGTTTAAATTGTGCATTG-ATGGCATCTA
130 AAAGTTGTTTAAATTGTGCATTGAATGACCTCTA
* * *
770846 AAAAGTTACAGAAGATGATAATGCACCATTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTGT
1 AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTAT
* * * *
770911 GCATTGAATGACCTCTAAAAAGTTGCAGAAGATGATAATGCACTACTATTTTACTCGTTTTCTAA
66 GCATTGAATAACCTCTGAAAAGTTGCAGAAGATGATAATGCACCACTATTTCAC-CGTTTTCTAA
* * *
770976 AAAGTTATTTAACTTGTGCATTGAATGACCTCTG
130 AAAGTTGTTTAAATTGTGCATTGAATGACCTCTA
*
771010 AAAAGTTGTAGAAGATGATAATG-ACCTACTAT
1 AAAAGTTGCAGAAGATGATAATGCACC-ACTAT
771042 GATGACATTT
Statistics
Matches: 441, Mismatches: 52, Indels: 36
0.83 0.10 0.07
Matches are distributed among these distances:
153 12 0.03
154 94 0.21
155 8 0.02
156 26 0.06
160 71 0.16
161 10 0.02
162 19 0.04
163 162 0.37
164 39 0.09
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (163 bp):
AAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTAT
GCATTGAATAACCTCTGAAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCGTTTTCTAAA
AAGTTGTTTAAATTGTGCATTGAATGACCTCTA
Found at i:770998 original size:245 final size:243
Alignment explanation
Indices: 770369--771041 Score: 899
Period size: 245 Copynumber: 2.8 Consensus size: 243
770359 TACATCATTG
* *
770369 AAAAGTTGCAGAAGATGATAATACACCACTATTTCACCCGTTTACTGAAAAGTTGTTTAAATTAT
1 AAAAGTTACAGAAGATGATAAT-CACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATT-T
* * * * *
770434 -CTTTGAAT-AACTTTGAAAAGTTGCAGAAGATGATAATGCACCACTATTTCACCCG-TTT-TGA
64 GCATTGAATGACCTCTAAAAAGTTGCAGAAGATGATAATGCACCACTATTTCACTCGTTTTCTGA
* ** *
770495 AAAGTTGTTTAAATTATGCATTGAATGACCTCTAAAAAGTTACAGAAAATGATAATGCACCACTA
129 AAAGTTGTTTAAATTATGCATTGAATGACCTCTGAAAAGTTGTAGAAGATGATAATGCACCACTA
*
770560 TTTCACATGTTTTCTGAAAAGTTGTTTAAATTATACATTTAATGACCTCT
194 TTTCACATGTTTTCTGAAAAGTTGTTTAAATTATACATTTAATGACATCT
* *
770610 --AA---ACAGAAGATGAT-A-CACTACTATTTCACCCCGTTTTCTAAAAAGTTGTTT-AATTTG
1 AAAAGTTACAGAAGATGATAATCACCACTATTTCA-CCCGTTTTCTGAAAAGTTGTTTAAATTTG
*
770667 CACTGAATGACCTCTAAAAAGTTGCAGAAGATGATAATGCACCACTATTTCACTCGTTTTCTGAA
65 CATTGAATGACCTCTAAAAAGTTGCAGAAGATGATAATGCACCACTATTTCACTCGTTTTCTGAA
* * *
770732 AATTTGTTTAAATTATGCATTGAATAACCTCTGAAAAGTTGTTGAAGATGATAATGCACCACTAT
130 AAGTTGTTTAAATTATGCATTGAATGACCTCTGAAAAGTTGTAGAAGATGATAATGCACCACTAT
* * * * *
770797 TTCACCAT-TTTTCTGAAACGTTGTTTAAATTGTGCA-TTGATGGCATCT
195 TTCA-CATGTTTTCTGAAAAGTTGTTTAAATTATACATTTAATGACATCT
*
770845 AAAAAGTTACAGAAGATGATAATGCACCATTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTG
1 -AAAAGTTACAGAAGATGATAAT-CACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATT-
* * *
770910 TGCATTGAATGACCTCTAAAAAGTTGCAGAAGATGATAATGCACTACTATTTTACTCGTTTTCTA
63 TGCATTGAATGACCTCTAAAAAGTTGCAGAAGATGATAATGCACCACTATTTCACTCGTTTTCTG
* * *
770975 AAAAGTTATTTAACTTGTGCATTGAATGACCTCTGAAAAGTTGTAGAAGATGATAATG-ACCTAC
128 AAAAGTTGTTTAAATTATGCATTGAATGACCTCTGAAAAGTTGTAGAAGATGATAATGCACC-AC
771039 TAT
192 TAT
771042 GATGACATTT
Statistics
Matches: 378, Mismatches: 36, Indels: 32
0.85 0.08 0.07
Matches are distributed among these distances:
232 1 0.00
233 22 0.06
234 63 0.17
235 13 0.03
236 102 0.27
237 3 0.01
238 2 0.01
239 2 0.01
241 12 0.03
242 1 0.00
243 21 0.06
244 18 0.05
245 118 0.31
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35
Consensus pattern (243 bp):
AAAAGTTACAGAAGATGATAATCACCACTATTTCACCCGTTTTCTGAAAAGTTGTTTAAATTTGC
ATTGAATGACCTCTAAAAAGTTGCAGAAGATGATAATGCACCACTATTTCACTCGTTTTCTGAAA
AGTTGTTTAAATTATGCATTGAATGACCTCTGAAAAGTTGTAGAAGATGATAATGCACCACTATT
TCACATGTTTTCTGAAAAGTTGTTTAAATTATACATTTAATGACATCT
Found at i:773465 original size:120 final size:120
Alignment explanation
Indices: 773252--773491 Score: 480
Period size: 120 Copynumber: 2.0 Consensus size: 120
773242 TAATTTTTAA
773252 TAAAACTCATCACTACAGGAAATATTAAAATATTGAGTCTGTAATATAAAAAATTACATCCCCAT
1 TAAAACTCATCACTACAGGAAATATTAAAATATTGAGTCTGTAATATAAAAAATTACATCCCCAT
773317 GAAACTCGTCACGTCGAGGTGACGAGTTTCTCTAGGATTGTAGAAAATACCGTAC
66 GAAACTCGTCACGTCGAGGTGACGAGTTTCTCTAGGATTGTAGAAAATACCGTAC
773372 TAAAACTCATCACTACAGGAAATATTAAAATATTGAGTCTGTAATATAAAAAATTACATCCCCAT
1 TAAAACTCATCACTACAGGAAATATTAAAATATTGAGTCTGTAATATAAAAAATTACATCCCCAT
773437 GAAACTCGTCACGTCGAGGTGACGAGTTTCTCTAGGATTGTAGAAAATACCGTAC
66 GAAACTCGTCACGTCGAGGTGACGAGTTTCTCTAGGATTGTAGAAAATACCGTAC
773492 ATCCTAAATA
Statistics
Matches: 120, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 120 1.00
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (120 bp):
TAAAACTCATCACTACAGGAAATATTAAAATATTGAGTCTGTAATATAAAAAATTACATCCCCAT
GAAACTCGTCACGTCGAGGTGACGAGTTTCTCTAGGATTGTAGAAAATACCGTAC
Found at i:778827 original size:228 final size:230
Alignment explanation
Indices: 778423--778882 Score: 906
Period size: 228 Copynumber: 2.0 Consensus size: 230
778413 GTGTTTTATA
778423 ATAATGAAGGATAGATAAAAGAGTATATACTTGTATTGAATTGAGCATGTTGATTAGATTCTTGT
1 ATAATGAAGGATAGATAAAAGAGTATATACTTGTATTGAATTGAGCATGTTGATTAGATTCTTGT
778488 GATGAATGGAATTCTTAAATGGGAGGATCACATTACAAGTTGATGAACCTAGTATGTATGATTCA
66 GATGAATGGAATTCTTAAATGGGAGGATCACATTACAAGTTGATGAACCTAGTATGTATGATTCA
778553 GGTCATTGCTGGCCTTAGCTTAATATTTCCAGGCAGGTCCACGCAGCCAGGACATTGCTGCTCCA
131 GGTCATTGCTGGCCTTAGCTTAATATTTCCAGGCAGGTCCACGCAGCCAGGACATTGCTGCTCCA
778618 CTAAGCAAGTACGGGTGT-AATGAGCTGAACATAG
196 CTAAGCAAGTACGGGTGTAAATGAGCTGAACATAG
778652 ATAATG-AGGATAGATAAAAGAGTATATACTTGTATTGAATTGAGCATGTTGATTAGATTCTTGT
1 ATAATGAAGGATAGATAAAAGAGTATATACTTGTATTGAATTGAGCATGTTGATTAGATTCTTGT
778716 GATGAATGGAATTCTTAAATGGGAGGATCACATTACAAGTTGATGAACCTAGTATGTATGATTCA
66 GATGAATGGAATTCTTAAATGGGAGGATCACATTACAAGTTGATGAACCTAGTATGTATGATTCA
778781 GGTCATTGCTGGCCTTAGCTTAATATTTCCAGGCAGGTCCACGCAGCCAGGACATTGCTGCTCCA
131 GGTCATTGCTGGCCTTAGCTTAATATTTCCAGGCAGGTCCACGCAGCCAGGACATTGCTGCTCCA
778846 CTAAGCAAGTACGGGTGTAAATGAGCTGAACATAG
196 CTAAGCAAGTACGGGTGTAAATGAGCTGAACATAG
778881 AT
1 AT
778883 TGAACGAATA
Statistics
Matches: 230, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
228 206 0.90
229 24 0.10
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.30
Consensus pattern (230 bp):
ATAATGAAGGATAGATAAAAGAGTATATACTTGTATTGAATTGAGCATGTTGATTAGATTCTTGT
GATGAATGGAATTCTTAAATGGGAGGATCACATTACAAGTTGATGAACCTAGTATGTATGATTCA
GGTCATTGCTGGCCTTAGCTTAATATTTCCAGGCAGGTCCACGCAGCCAGGACATTGCTGCTCCA
CTAAGCAAGTACGGGTGTAAATGAGCTGAACATAG
Found at i:786058 original size:2 final size:2
Alignment explanation
Indices: 786051--786090 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
786041 GAATTGGAAA
786051 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
786091 CACACACACA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:787006 original size:15 final size:15
Alignment explanation
Indices: 786986--787017 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
786976 TCATGGAGGG
*
786986 GATGGAGGTGATGAT
1 GATGGAGATGATGAT
787001 GATGGAGATGATGAT
1 GATGGAGATGATGAT
787016 GA
1 GA
787018 CTATTTTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.44, T:0.25
Consensus pattern (15 bp):
GATGGAGATGATGAT
Found at i:795009 original size:2 final size:2
Alignment explanation
Indices: 795004--795037 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
794994 ATTTATTTTC
795004 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
795038 TATCTATAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:798566 original size:21 final size:21
Alignment explanation
Indices: 798522--798566 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
798512 GATTTCTGGG
*
798522 CAAGGGGAATCGATACCCATT
1 CAAGGGGAATCGATACCCACT
*
798543 CAAGGGGAA-CAGATACCCCCT
1 CAAGGGGAATC-GATACCCACT
798564 CAA
1 CAA
798567 ACGAACCAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.36, C:0.29, G:0.22, T:0.13
Consensus pattern (21 bp):
CAAGGGGAATCGATACCCACT
Found at i:800557 original size:103 final size:103
Alignment explanation
Indices: 800241--800549 Score: 506
Period size: 103 Copynumber: 3.1 Consensus size: 103
800231 GGGTCTACGC
* *
800241 GGTCCTTCAGGATATATATGTATTCTTTGGAACA--TGT---G--TGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
800299 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
66 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
800337 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
800402 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
66 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
*
800440 GGTCCTTCGGGACATATATGTATTCTTTGGATCATGTGTGAAGTCTGGTGAGACACATACTTGAT
1 GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
* * *
800505 CCCTAGTATATGTATATGATTCTTAAGGAATGATATGT
66 CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
*
800543 AGTCCTT
1 GGTCCTT
800550 ATGGACATTA
Statistics
Matches: 199, Mismatches: 7, Indels: 7
0.93 0.03 0.03
Matches are distributed among these distances:
96 32 0.16
98 3 0.02
101 1 0.01
103 163 0.82
ACGTcount: A:0.26, C:0.14, G:0.23, T:0.37
Consensus pattern (103 bp):
GGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATACTTGAT
CCTTGGCATATGTATATGATTCTTAAGGAATGATATGT
Found at i:800602 original size:23 final size:23
Alignment explanation
Indices: 800566--800628 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
800556 ATTATTATAT
*
800566 GGCACTACGATGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
800589 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
*
800612 GGCACTTCGGTGCAATT
1 GGCACTACGGTGCAATT
800629 ATATGAGCTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.21, C:0.29, G:0.25, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:807437 original size:2 final size:2
Alignment explanation
Indices: 807426--807468 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
807416 TTTCATATGT
*
807426 TA TA -A TA TA TA TA TA TA TA TA TA TA T- TA TA TA T- TA TA TC
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
807465 TA TA
1 TA TA
807469 GTTATTATGA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
1 3 0.08
2 33 0.92
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:809125 original size:11 final size:11
Alignment explanation
Indices: 809106--809152 Score: 62
Period size: 11 Copynumber: 4.5 Consensus size: 11
809096 AAGGAGATCA
*
809106 AAGACAAAAAG
1 AAGAAAAAAAG
809117 AAGAAAAAAAG
1 AAGAAAAAAAG
809128 -A-AAAAAAAG
1 AAGAAAAAAAG
*
809137 AAAAAAAAAAG
1 AAGAAAAAAAG
809148 AAGAA
1 AAGAA
809153 TTTCAAAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 8 0.25
10 2 0.06
11 22 0.69
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAAG
Found at i:809132 original size:9 final size:9
Alignment explanation
Indices: 809105--809144 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
809095 AAAGGAGATC
809105 AAAGACAAAA
1 AAAGA-AAAA
809115 AGAAG-AAAA
1 A-AAGAAAAA
809124 AAAGAAAAA
1 AAAGAAAAA
809133 AAAGAAAAA
1 AAAGAAAAA
809142 AAA
1 AAA
809145 AAGAAGAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
8 3 0.11
9 21 0.75
10 1 0.04
11 3 0.11
ACGTcount: A:0.85, C:0.03, G:0.12, T:0.00
Consensus pattern (9 bp):
AAAGAAAAA
Found at i:809136 original size:20 final size:20
Alignment explanation
Indices: 809111--809149 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
809101 GATCAAAGAC
*
809111 AAAAAGAAGAAAAAAAGAAA
1 AAAAAGAAAAAAAAAAGAAA
809131 AAAAAGAAAAAAAAAAGAA
1 AAAAAGAAAAAAAAAAGAA
809150 GAATTTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (20 bp):
AAAAAGAAAAAAAAAAGAAA
Found at i:819971 original size:23 final size:23
Alignment explanation
Indices: 819945--819990 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
819935 AATGAGCAAG
819945 AATAA-GAAAACAAAGAAAAAGGA
1 AATAATGAAAA-AAAGAAAAAGGA
* *
819968 AATAATGAGAAGAAGAAAAAGGA
1 AATAATGAAAAAAAGAAAAAGGA
819991 TGTTGGTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.70, C:0.02, G:0.22, T:0.07
Consensus pattern (23 bp):
AATAATGAAAAAAAGAAAAAGGA
Found at i:820469 original size:29 final size:29
Alignment explanation
Indices: 820434--820514 Score: 85
Period size: 29 Copynumber: 2.8 Consensus size: 29
820424 GGCATAATCG
820434 TCGTTCTGATTCTGCAT-AGAATTATT-TCA
1 TCGTTCTGATTCTGCATGAG-ATT-TTATCA
* *
820463 TCGTTCTGATTATGCATGAGATTTTATCC
1 TCGTTCTGATTCTGCATGAGATTTTATCA
* * *
820492 TCGTCCTGATTCTGTATGTGATT
1 TCGTTCTGATTCTGCATGAGATT
820515 ATGTCCCCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
28 2 0.05
29 40 0.91
30 2 0.05
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.46
Consensus pattern (29 bp):
TCGTTCTGATTCTGCATGAGATTTTATCA
Found at i:820527 original size:29 final size:30
Alignment explanation
Indices: 820468--820571 Score: 99
Period size: 29 Copynumber: 3.6 Consensus size: 30
820458 TTTCATCGTT
* * * * *
820468 CTGATTATG-CATGAGATTTTATCCTCGTC
1 CTGATTCTGTCATGGGATTATATCCCCATC
* *
820497 CTGATTCTGT-ATGTGATTATGTCCCCATC
1 CTGATTCTGTCATGGGATTATATCCCCATC
* *
820526 CTAATTCT-TCATGGGATTATATCTCCATC
1 CTGATTCTGTCATGGGATTATATCCCCATC
820555 CTGATTCTG-CATGGGAT
1 CTGATTCTGTCATGGGAT
820572 CCTCTATGGA
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
28 1 0.02
29 60 0.98
ACGTcount: A:0.20, C:0.22, G:0.17, T:0.40
Consensus pattern (30 bp):
CTGATTCTGTCATGGGATTATATCCCCATC
Found at i:821508 original size:31 final size:31
Alignment explanation
Indices: 821473--821531 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
821463 AATATTTAGT
*
821473 CCATTTACAATATGGTCCCCGACGTAACCAG
1 CCATTTACAATATGGTCCCCGACATAACCAG
*
821504 CCATTTACAATATGGTCCCTGACATAAC
1 CCATTTACAATATGGTCCCCGACATAAC
821532 TAGCTGTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.31, C:0.31, G:0.14, T:0.25
Consensus pattern (31 bp):
CCATTTACAATATGGTCCCCGACATAACCAG
Found at i:837734 original size:8 final size:8
Alignment explanation
Indices: 837721--837759 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
837711 CTCATTTTCA
837721 GAGAATTT
1 GAGAATTT
837729 GAGAATTT
1 GAGAATTT
*
837737 -AGAGTTT
1 GAGAATTT
*
837744 GGGAATTT
1 GAGAATTT
837752 GAGAATTT
1 GAGAATTT
837760 AAAAGCTTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
7 6 0.23
8 20 0.77
ACGTcount: A:0.33, C:0.00, G:0.28, T:0.38
Consensus pattern (8 bp):
GAGAATTT
Found at i:838342 original size:127 final size:128
Alignment explanation
Indices: 837832--838346 Score: 942
Period size: 128 Copynumber: 4.0 Consensus size: 128
837822 TAATCGGAGT
*
837832 ACTATTCATATCAGTACCTATTATTTCTCAGGGGACTTGAAGACGCGTTCCCGGGGGCGCGCCTT
1 ACTATTCATATCAGTACCTATTATTTCTCAGGGGACTTGAAGGCGCGTTCCCGGGGGCGCGCCTT
* *
837897 CTATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTTATGTCCCTCGGGGAC
66 CCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCCCTCGGGGAC
* *
837960 ACTATTCATATCAGTATCTATTATTTCTCAGGGAACTTGAAGGCGCGTTCCCGGGGGCGCGCCTT
1 ACTATTCATATCAGTACCTATTATTTCTCAGGGGACTTGAAGGCGCGTTCCCGGGGGCGCGCCTT
*
838025 CCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCCCTCGGGGAT
66 CCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCCCTCGGGGAC
*
838088 ACTATTCATATCAGTACCTATTATTTCTCAGGGGACTTGAAGGCGCGTTCCCGGGGGGGCGCCTT
1 ACTATTCATATCAGTACCTATTATTTCTCAGGGGACTTGAAGGCGCGTTCCCGGGGGCGCGCCTT
*
838153 CCATTATTTTGTTAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCCCTCGGGGAC
66 CCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCCCTCGGGGAC
*
838216 ACTATTCATATCAGTACCTATTATTTCTCAGGGGACTTGAAGGCGCGTTCCC-GAGGCGCGCCTT
1 ACTATTCATATCAGTACCTATTATTTCTCAGGGGACTTGAAGGCGCGTTCCCGGGGGCGCGCCTT
838280 CCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCCCTCGGGGAC
66 CCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCCCTCGGGGAC
838343 ACTA
1 ACTA
838347 GATGGATTGT
Statistics
Matches: 373, Mismatches: 14, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
127 76 0.20
128 297 0.80
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (128 bp):
ACTATTCATATCAGTACCTATTATTTCTCAGGGGACTTGAAGGCGCGTTCCCGGGGGCGCGCCTT
CCATTATTTTGTCAGAGAATATGTTATCATTGCCCTATTATGTCACTCATGTCCCTCGGGGAC
Found at i:838781 original size:34 final size:33
Alignment explanation
Indices: 838742--838842 Score: 122
Period size: 34 Copynumber: 3.2 Consensus size: 33
838732 TAAGTTAAAA
* *
838742 TTTAATGTTAAATTTCGAATACTATAATTTATAT
1 TTTAATTTTAAATTTTGAATA-TATAATTTATAT
838776 TTTAATTTTAAATTTTGAATA-AT-A-TTAT-T
1 TTTAATTTTAAATTTTGAATATATAATTTATAT
*
838805 TTT-ATTTTAAATTTTGAATAATATAATTTGTAT
1 TTTAATTTTAAATTTTGAAT-ATATAATTTATAT
838838 TTTAA
1 TTTAA
838843 AAACATTTAT
Statistics
Matches: 58, Mismatches: 3, Indels: 12
0.79 0.04 0.16
Matches are distributed among these distances:
28 16 0.28
29 5 0.09
30 6 0.10
31 2 0.03
32 5 0.09
33 4 0.07
34 20 0.34
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (33 bp):
TTTAATTTTAAATTTTGAATATATAATTTATAT
Found at i:838804 original size:28 final size:27
Alignment explanation
Indices: 838773--838843 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 27
838763 CTATAATTTA
838773 TATTTTAATTTTAAATTTTGAATAATAT
1 TATTTT-ATTTTAAATTTTGAATAATAT
838801 TATTTTTATTTTAAATTTTGAATAATAT
1 TA-TTTTATTTTAAATTTTGAATAATAT
*
838829 AATTTGTATTTTAAA
1 TATTT-TATTTTAAA
838844 AACATTTATC
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 3 0.08
28 33 0.82
29 4 0.10
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (27 bp):
TATTTTATTTTAAATTTTGAATAATAT
Found at i:839415 original size:21 final size:21
Alignment explanation
Indices: 839364--839478 Score: 142
Period size: 21 Copynumber: 5.5 Consensus size: 21
839354 TATGGTATAA
* * *
839364 AACCCTACGGGCTAGGCATGT
1 AACCCTGCGGGCTCGGAATGT
* *
839385 AA-CTTGGCGGGCTAGGAATGT
1 AACCCT-GCGGGCTCGGAATGT
839406 AACCCTGCGGGCTCGGAATGT
1 AACCCTGCGGGCTCGGAATGT
*
839427 AACCCTGCGAGCTCGGAATGT
1 AACCCTGCGGGCTCGGAATGT
*
839448 AACCCTACGGGCTCGGAATGT
1 AACCCTGCGGGCTCGGAATGT
*
839469 AACCATGCGG
1 AACCCTGCGG
839479 AGATGGCATA
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
20 2 0.02
21 78 0.95
22 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.31, T:0.19
Consensus pattern (21 bp):
AACCCTGCGGGCTCGGAATGT
Found at i:841583 original size:50 final size:50
Alignment explanation
Indices: 841484--841586 Score: 145
Period size: 50 Copynumber: 2.1 Consensus size: 50
841474 GCATTTAATG
* * *
841484 GAAGGCGCGTCCCCGAGGATGCACTTTCCACACGTGGCAGTCGAGTCAGT
1 GAAGGCGCGTCCCCGAGGATGCACCTTCCACACGTGGCAGTCAACTCAGT
* *
841534 GAAGGCGCGTCCCCGGGGATGCGCCTTCCACACGTGGCA-TCCAACTCAGT
1 GAAGGCGCGTCCCCGAGGATGCACCTTCCACACGTGGCAGT-CAACTCAGT
841584 GAA
1 GAA
841587 AACACGGGTA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
49 1 0.02
50 46 0.98
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (50 bp):
GAAGGCGCGTCCCCGAGGATGCACCTTCCACACGTGGCAGTCAACTCAGT
Found at i:848909 original size:58 final size:57
Alignment explanation
Indices: 848812--848945 Score: 173
Period size: 61 Copynumber: 2.3 Consensus size: 57
848802 CTGTGATTAT
* *
848812 CAAGAACAGACACATACGCAAACGAATAACTGCATACTT-AAA-AAAGGAAACAAAAA
1 CAAGAACAGACACATACGAAAACGAATAACTGCATACTTAAAAGAAAAGAAA-AAAAA
*
848868 CAAGAACAGACACATACGAAATTACGAATAACTGTATACTTAGAAAAGAAAAGAAAAAAAA
1 CAAGAACAGACACATACGAAA--ACGAATAACTGCATACTT--AAAAGAAAAGAAAAAAAA
*
848929 CAAGAACAAACACATAC
1 CAAGAACAGACACATAC
848946 ACACGAATTG
Statistics
Matches: 68, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
56 20 0.29
58 17 0.25
61 24 0.35
62 7 0.10
ACGTcount: A:0.58, C:0.18, G:0.12, T:0.12
Consensus pattern (57 bp):
CAAGAACAGACACATACGAAAACGAATAACTGCATACTTAAAAGAAAAGAAAAAAAA
Found at i:849445 original size:21 final size:21
Alignment explanation
Indices: 849419--849458 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
849409 TATAATGTAA
* *
849419 ATTTCAGAATAATTAAATTAG
1 ATTTCAAAATAAATAAATTAG
849440 ATTTCAAAATAAATAAATT
1 ATTTCAAAATAAATAAATT
849459 TAATTATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.38
Consensus pattern (21 bp):
ATTTCAAAATAAATAAATTAG
Found at i:855263 original size:2 final size:2
Alignment explanation
Indices: 855256--855282 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
855246 AATAGCATCG
855256 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
855283 CACACTAGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:874856 original size:21 final size:21
Alignment explanation
Indices: 874798--874866 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 21
874788 TTGAGGGGTT
* * *
874798 GATCCTTTTGGTGAAGGAATC
1 GATCCTTTTAGTAAAGGGATC
* * *
874819 GATGCTTTTACTCAAGGGATC
1 GATCCTTTTAGTAAAGGGATC
* *
874840 GATCCTTTTTGTAAAGGGATT
1 GATCCTTTTAGTAAAGGGATC
874861 GATCCT
1 GATCCT
874867 AAACCTACTA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (21 bp):
GATCCTTTTAGTAAAGGGATC
Found at i:874929 original size:21 final size:20
Alignment explanation
Indices: 874883--874940 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
874873 ACTAGAATCC
* *
874883 AAGGGATCGATCATTTTTCA
1 AAGGGATCAATCATTTGTCA
* *
874903 AGGGGATCAATCCTTTGGTCA
1 AAGGGATCAATCATTT-GTCA
874924 AAGGGATCAATGCATTT
1 AAGGGATCAAT-CATTT
874941 TCTAAGAGAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
20 13 0.43
21 13 0.43
22 4 0.13
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (20 bp):
AAGGGATCAATCATTTGTCA
Found at i:874942 original size:41 final size:41
Alignment explanation
Indices: 874883--874960 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
874873 ACTAGAATCC
* *
874883 AAGGGATCGATCATTTTTC-AAGGGGATCAATCCTTTGGTCA
1 AAGGGATCAATCATTTTTCTAA-GAGATCAATCCTTTGGTCA
*
874924 AAGGGATCAATGCA-TTTTCTAAGAGATCGATCCTTTG
1 AAGGGATCAAT-CATTTTTCTAAGAGATCAATCCTTTG
874961 ATCTAGAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
41 28 0.88
42 4 0.12
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (41 bp):
AAGGGATCAATCATTTTTCTAAGAGATCAATCCTTTGGTCA
Found at i:880479 original size:20 final size:19
Alignment explanation
Indices: 880423--880472 Score: 75
Period size: 20 Copynumber: 2.6 Consensus size: 19
880413 TTCAAATCAA
880423 GATTATATTTTATTTTTAG
1 GATTATATTTTATTTTTAG
*
880442 GAATTATCTTTTATTTTTAG
1 G-ATTATATTTTATTTTTAG
880462 GATTAT-TTTTA
1 GATTATATTTTA
880473 ATATTTTCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 5 0.17
19 6 0.21
20 18 0.62
ACGTcount: A:0.26, C:0.02, G:0.10, T:0.62
Consensus pattern (19 bp):
GATTATATTTTATTTTTAG
Found at i:884787 original size:17 final size:17
Alignment explanation
Indices: 884765--884799 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
884755 TCTTTTTTCC
884765 CCTGAATAAAGGCTTCA
1 CCTGAATAAAGGCTTCA
884782 CCTGAATAAAGGCTTCA
1 CCTGAATAAAGGCTTCA
884799 C
1 C
884800 AACTGAGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (17 bp):
CCTGAATAAAGGCTTCA
Found at i:886239 original size:16 final size:17
Alignment explanation
Indices: 886202--886239 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
886192 TGATAAAACA
*
886202 TTAAACAAATTATTTGT
1 TTAAACAAATTATTTAT
886219 TTAAACAAATTA-TTAT
1 TTAAACAAATTATTTAT
886235 TTAAA
1 TTAAA
886240 TTAATTGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (17 bp):
TTAAACAAATTATTTAT
Found at i:886559 original size:29 final size:29
Alignment explanation
Indices: 886485--886561 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
886475 TTAGGTTTGT
* *
886485 TTAATCGAACCAAAATTTATTTGAACATTA
1 TTAATCGAACC-AAATTAATTTGAAAATTA
* ***
886515 TTAACCGAATTGAATTAATTTGAAAATTA
1 TTAATCGAACCAAATTAATTTGAAAATTA
886544 TTAATCGAACCAAATTAA
1 TTAATCGAACCAAATTAA
886562 CCGATTTTTT
Statistics
Matches: 37, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
29 29 0.78
30 8 0.22
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.35
Consensus pattern (29 bp):
TTAATCGAACCAAATTAATTTGAAAATTA
Found at i:886601 original size:137 final size:137
Alignment explanation
Indices: 886460--886836 Score: 542
Period size: 138 Copynumber: 2.7 Consensus size: 137
886450 CGGTTAAAGA
* * *
886460 AAAAAATTTGGTTAATTAGGTTTGTTTAATCGAACCAAAATTTATTTGAACATTATTAACCGAAT
1 AAAAAATTTGGTTAATTCGGTTTG-TTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAAC
* * *
886525 TGAATTAATTTGAAAATTATTAATCGAACCAAATTAACCGATTTTTTT-AATTATTAACCGAATT
65 CGAATTAATTTGAAAATTATTAACCGAACCGAATTAACCGATTTTTTTAAATTATTAACCGAATT
886589 AATCGAAG
130 AATCGAAG
* * *
886597 AAAAAATTTGGTTAGTTCGGTTCGGTTAATTGAACCAAAATTTATTTGAAAATTATTAACCGAAC
1 AAAAAATTTGGTTAATTCGGTT-TGTTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAAC
** * **
886662 CGAATTAATTTGAAAATTATTAACCGAAGTGAATTAACCGTTTTTTTTAAATTATTAATTGAATT
65 CGAATTAATTTGAAAATTATTAACCGAACCGAATTAACCGATTTTTTTAAATTATTAACCGAATT
886727 AATCGAAG
130 AATCGAAG
* * * *
886735 CAAAAATTCT-ATTAATTCGGTTTAGTTAATCAAACCAAAATTTATTTGAAAATTATTAACTGAA
1 AAAAAATT-TGGTTAATTCGGTTT-GTTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAA
886799 CCGAATTAATTTGAAAATTATTAACCGAACCGAATTAA
64 CCGAATTAATTTGAAAATTATTAACCGAACCGAATTAA
886837 TCAAATTTTT
Statistics
Matches: 213, Mismatches: 23, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
137 99 0.46
138 113 0.53
139 1 0.00
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (137 bp):
AAAAAATTTGGTTAATTCGGTTTGTTAATCGAACCAAAATTTATTTGAAAATTATTAACCGAACC
GAATTAATTTGAAAATTATTAACCGAACCGAATTAACCGATTTTTTTAAATTATTAACCGAATTA
ATCGAAG
Found at i:886672 original size:29 final size:29
Alignment explanation
Indices: 886635--886698 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
886625 ATTGAACCAA
*
886635 AATTTATTTGAAAATTATTAACCGAACCG
1 AATTAATTTGAAAATTATTAACCGAACCG
**
886664 AATTAATTTGAAAATTATTAACCGAAGTG
1 AATTAATTTGAAAATTATTAACCGAACCG
886693 AATTAA
1 AATTAA
886699 CCGTTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.34
Consensus pattern (29 bp):
AATTAATTTGAAAATTATTAACCGAACCG
Found at i:886815 original size:29 final size:29
Alignment explanation
Indices: 886773--886837 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
886763 ATCAAACCAA
* *
886773 AATTTATTTGAAAATTATTAACTGAACCG
1 AATTAATTTGAAAATTATTAACCGAACCG
886802 AATTAATTTGAAAATTATTAACCGAACCG
1 AATTAATTTGAAAATTATTAACCGAACCG
886831 AATTAAT
1 AATTAAT
886838 CAAATTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.35
Consensus pattern (29 bp):
AATTAATTTGAAAATTATTAACCGAACCG
Found at i:887464 original size:30 final size:29
Alignment explanation
Indices: 887429--887496 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
887419 GTCGGTAGCT
887429 TGATTGAATT-AATTAAATAGTTAGATGGTC
1 TGATTG-ATTCAATTAAA-AGTTAGATGGTC
*
887459 TGATTGATTCAATTAAAAGTTAGGTGGTC
1 TGATTGATTCAATTAAAAGTTAGATGGTC
**
887488 ACATTGATT
1 TGATTGATT
887497 TTTAACCATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 21 0.62
30 13 0.38
ACGTcount: A:0.34, C:0.06, G:0.21, T:0.40
Consensus pattern (29 bp):
TGATTGATTCAATTAAAAGTTAGATGGTC
Found at i:894161 original size:20 final size:19
Alignment explanation
Indices: 894130--894172 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
894120 GGTTTATTTA
894130 TTTATTTTTTATT-TTCATT
1 TTTATTTTTTATTATT-ATT
894149 TTTATTATTTTATTATTATT
1 TTTATT-TTTTATTATTATT
894169 TTTA
1 TTTA
894173 CTAAATTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.27
20 14 0.64
21 2 0.09
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTATTTTTTATTATTATT
Found at i:898995 original size:84 final size:84
Alignment explanation
Indices: 898851--899962 Score: 1095
Period size: 84 Copynumber: 13.5 Consensus size: 84
898841 AAAAGCACCT
*
898851 CCAACAAAAGACCTTTGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
*
898916 AGGAAAGAAGGGCTATATG
66 AGGAAAGAAGGGTTATATG
*
898935 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAACATAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
* *
899000 A-GACAAGAAGGGTTATTTA
66 AGGA-AAGAAGGGTTATATG
* *
899019 CCAACAAAAGACCTTCGAGTTCGATTCCACTCAGCTCAAAGGCACATCATTTGCAGTATAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
* *
899084 A-GACAAGAAGGGCTATCTG
66 AGGA-AAGAAGGGTTATATG
* * * * * *
899103 CAAACAAAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGACACATCATTTGCAGTATAACTCG
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
* **
899168 AGGCAAGAATAG--ATAT-
66 AGGAAAGAAGGGTTATATG
** * * *
899184 -CTGCAAAATACCTTCGAGTTCGATTACACTCAGCTCAAAGG-A-AACATTTTCAGCATAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
** * * *
899246 AGGCGAGAAAGGCTATCTG
66 AGGAAAGAAGGGTTATATG
* ** *
899265 -C--C-AAAGATCTTCGAGTTCGATTACACTCAGCTCAAAGATACATCATTTGCAACATAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
* * *
899326 AGGCAAGAAAGGTTATTTG
66 AGGAAAGAAGGGTTATATG
* * * *
899345 CCAACAAAAGACCTTCGAGTTCGATTACACTTAGCTCAAAGGTACATCATTTGCAACATAGTTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
* * *
899410 AGGCAAGAAAGGTTATCT-
66 AGGAAAGAAGGGTTATATG
* *
899428 TC--C-AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAACATAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
* ** *
899490 AGGAAATAAATGTTATTTG
66 AGGAAAGAAGGGTTATATG
* *
899509 CCAATAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGTCACATCATTTGCAGCATAGCT-A
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
* * *
899573 AAGACGAGAAGGG--CTAT-
66 AGGA-AAGAAGGGTTATATG
* * * * * * *
899590 -CTACCAAAGACATTCGAGTTCGATTACACTCAACTCAAAGGTACATCATTTACAACATAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
* * *
899654 AGGCAATAAGGGTTATCTG
66 AGGAAAGAAGGGTTATATG
* * * * * ** *
899673 TCAACCAAA-ACCTTTGAGTTCGATTACATTCAACTCAAAGGCTTATCAAATTTACAGCATAGCT
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC--ATTTGCAGCATAGCT
* *
899737 CAAGGAAAGAAGGGTTGTCTG
64 CAAGGAAAGAAGGGTTATATG
* * * * * *
899758 TCAAC-AAATACCTTCGAGTTCAATTACACTCAACTCAAAGGCACATCATTTACATCATAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
** *
899822 AGGCGAGAAGGGTTATCTG
66 AGGAAAGAAGGGTTATATG
* * * * ** * * *
899841 TCAAC-CAAGACCTTCGAGTTCGATTACATTCATCTCAAAGGCTTATCAAATTTACAGTATAGTT
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC--ATTTGCAGCATAGCT
* *
899905 CAAGGTAAGAAGGGCTATATG
64 CAAGGAAAGAAGGGTTATATG
* * * * * *
899926 TCAAC-AAATACATTCGAGTTTGATTTCATTCAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCA
899963 TTCGAGAAAA
Statistics
Matches: 878, Mismatches: 124, Indels: 51
0.83 0.12 0.05
Matches are distributed among these distances:
78 57 0.06
79 3 0.00
80 200 0.23
81 7 0.01
82 7 0.01
83 112 0.13
84 361 0.41
85 131 0.15
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.25
Consensus pattern (84 bp):
CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
AGGAAAGAAGGGTTATATG
Found at i:899131 original size:168 final size:166
Alignment explanation
Indices: 898851--899962 Score: 1257
Period size: 168 Copynumber: 6.7 Consensus size: 166
898841 AAAAGCACCT
*
898851 CCAACAAAAGACCTTTGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
*
898916 AGGA-AAGAAGGGCTATATGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCAC
66 A-GACAAGAAGGGCTATCTG-CAAC-AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCAC
* *
898980 ATCATTTGCAACATAGCTCAAGACAAGAAGGGTTATTTA
128 ATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTG
* *
899019 CCAACAAAAGACCTTCGAGTTCGATTCCACTCAGCTCAAAGGCACATCATTTGCAGTATAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
* *
899084 AGACAAGAAGGGCTATCTGCAAACAAAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGACACA
66 AGACAAGAAGGGCTATCTGC-AAC-AAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACA
** * * ** * *
899149 TCATTTGCAGTATAACTCGAGGCAAGAATAGATATCTG
129 TCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTG
* * *
899187 ----CAAAATACCTTCGAGTTCGATTACACTCAGCTCAAAGG-A-AACATTTTCAGCATAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
* * * * **
899246 AGGCGAGAAAGGCTATCTGC--CAAAGATCTTCGAGTTCGATTACACTCAGCTCAAAGATACATC
66 AGACAAGAAGGGCTATCTGCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC
*
899309 ATTTGCAACATAGCTCAAGGCAAGAAAGGTTATTTG
131 ATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTG
* * * *
899345 CCAACAAAAGACCTTCGAGTTCGATTACACTTAGCTCAAAGGTACATCATTTGCAACATAGTTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
* * * *
899410 AGGCAAGAAAGGTTATCTTC--CAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC
66 AGACAAGAAGGGCTATCTGCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC
* * **
899473 ATTTGCAACATAGCTCAAGGAAATAAATGTTATTTG
131 ATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTG
* * *
899509 CCAATAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGTCACATCATTTGCAGCATAGCTAA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
* * * * *
899574 AGACGAGAAGGGCTATCT--ACCAAAGACATTCGAGTTCGATTACACTCAACTCAAAGGTACATC
66 AGACAAGAAGGGCTATCTGCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC
* * *
899637 ATTTACAACATAGCTCAAGGCAATAAGGGTTATCTG
131 ATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTG
* * * * * ** *
899673 TCAACCAAA-ACCTTTGAGTTCGATTACATTCAACTCAAAGGCTTATCAAATTTACAGCATAGCT
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC--ATTTGCAGCATAGCT
* * * * *
899737 CAAGGA-AAGAAGGGTTGTCTGTCAACAAATACCTTCGAGTTCAATTACACTCAACTCAAAGGCA
64 CAA-GACAAGAAGGGCTATCTG-CAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCA
* * * *
899801 CATCATTTACATCATAGCTCAAGGCGAGAAGGGTTATCTG
127 CATCATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTG
* * * * ** * * *
899841 TCAAC-CAAGACCTTCGAGTTCGATTACATTCATCTCAAAGGCTTATCAAATTTACAGTATAGTT
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC--ATTTGCAGCATAGCT
** * * * * * *
899905 CAAGGTAAGAAGGGCTATATGTCAACAAATACATTCGAGTTTGATTTCATTCAGCTCA
64 CAAGACAAGAAGGGCTATCTG-CAACAAAGACCTTCGAGTTCGATTACACTCAGCTCA
899963 TTCGAGAAAA
Statistics
Matches: 820, Mismatches: 106, Indels: 36
0.85 0.11 0.04
Matches are distributed among these distances:
158 67 0.08
159 1 0.00
162 70 0.09
163 34 0.04
164 291 0.35
165 27 0.03
166 2 0.00
167 6 0.01
168 322 0.39
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.25
Consensus pattern (166 bp):
CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
AGACAAGAAGGGCTATCTGCAACAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATC
ATTTGCAACATAGCTCAAGGCAAGAAGGGTTATTTG
Found at i:899460 original size:164 final size:164
Alignment explanation
Indices: 898851--899922 Score: 1187
Period size: 164 Copynumber: 6.5 Consensus size: 164
898841 AAAAGCACCT
* *
898851 CCAACAAAAGACCTTTGAGTTCGATTACACTCAGCTCAAAGGCACATCATTTGCAGCATAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGTACATCATTTGCAGCATAGCTCA
* * *
898916 AGGAAAGAAGGGCTATATGCCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACA
66 AGGCAAGAAGGGC--TAT--CTACCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACA
* * * *
898981 TCATTTGCAACATAGCTCAAGACAAGAAGGGTTATTTA
127 TCATTTGCAACATAGCTCAAGGCAAGAAAGGTTATCTG
* * *
899019 CCAACAAAAGACCTTCGAGTTCGATTCCACTCAGCTCAAAGGCACATCATTTGCAGTATAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGTACATCATTTGCAGCATAGCTCA
* * * *
899084 AGACAAGAAGGGCTATCTGCAAACAAAAGACCTTCGAGTTTGATTACACTCAGCTCAAAGACACA
66 AGGCAAGAAGGGCTATCT----ACCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACA
** * * *
899149 TCATTTGCAGTATAACTCGAGGCAAGAATA-GATATCTG
127 TCATTTGCAACATAGCTCAAGGCAAGAA-AGGTTATCTG
* * *
899187 ----CAAAATACCTTCGAGTTCGATTACACTCAGCTCAAAGG-A-AACATTTTCAGCATAGCTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGTACATCATTTGCAGCATAGCTCA
* * * * **
899246 AGGCGAGAAAGGCTATCTGCCAAAGATCTTCGAGTTCGATTACACTCAGCTCAAAGATACATCAT
66 AGGCAAGAAGGGCTATCTACCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAT
*
899311 TTGCAACATAGCTCAAGGCAAGAAAGGTTATTTG
131 TTGCAACATAGCTCAAGGCAAGAAAGGTTATCTG
* * *
899345 CCAACAAAAGACCTTCGAGTTCGATTACACTTAGCTCAAAGGTACATCATTTGCAACATAGTTCA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGTACATCATTTGCAGCATAGCTCA
* * *
899410 AGGCAAGAAAGGTTATCTTCCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAT
66 AGGCAAGAAGGGCTATCTACCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAT
* * * *
899475 TTGCAACATAGCTCAAGGAAATAAATGTTATTTG
131 TTGCAACATAGCTCAAGGCAAGAAAGGTTATCTG
* *
899509 CCAATAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAA-GTCACATCATTTGCAGCATAGCTA
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGT-ACATCATTTGCAGCATAGCTC
* * * * *
899573 AAGACGAGAAGGGCTATCTACCAAAGACATTCGAGTTCGATTACACTCAACTCAAAGGTACATCA
65 AAGGCAAGAAGGGCTATCTACCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCA
* * *
899638 TTTACAACATAGCTCAAGGCAATAAGGGTTATCTG
130 TTTGCAACATAGCTCAAGGCAAGAAAGGTTATCTG
* * * * * * *
899673 TCAACCAAA-ACCTTTGAGTTCGATTACATTCAACTCAAAGGCTTATCA-AATTTACAGCATAGC
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGG--TA-CATCATTTGCAGCATAGC
* * * * * * *
899736 TCAAGGAAAGAAGGGTTGTCTGTCAACAAATACCTTCGAGTTCAATTACACTCAACTCAAAGGCA
63 TCAAGGCAAGAAGGGCTATC--T-ACCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCA
* * * *
899801 CATCATTTACATCATAGCTCAAGGCGAGAAGGGTTATCTG
125 CATCATTTGCAACATAGCTCAAGGCAAGAAAGGTTATCTG
* * * * * * * *
899841 TCAAC-CAAGACCTTCGAGTTCGATTACATTCATCTCAAAGGCTTATCA-AATTTACAGTATAGT
1 CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGG--TA-CATCATTTGCAGCATAGC
*
899904 TCAAGGTAAGAAGGGCTAT
63 TCAAGGCAAGAAGGGCTAT
899923 ATGTCAACAA
Statistics
Matches: 784, Mismatches: 99, Indels: 42
0.85 0.11 0.05
Matches are distributed among these distances:
157 1 0.00
158 68 0.09
162 68 0.09
163 31 0.04
164 293 0.37
165 28 0.04
166 6 0.01
167 3 0.00
168 286 0.36
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.25
Consensus pattern (164 bp):
CCAACAAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGTACATCATTTGCAGCATAGCTCA
AGGCAAGAAGGGCTATCTACCAAAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCAT
TTGCAACATAGCTCAAGGCAAGAAAGGTTATCTG
Found at i:901903 original size:16 final size:17
Alignment explanation
Indices: 901884--901931 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
901874 TTTTTGGTTA
901884 ATTTAT-TTATTTATTT
1 ATTTATATTATTTATTT
901900 ATTTATATT-TTTA-TT
1 ATTTATATTATTTATTT
*
901915 ATTT-TATTATTTTTTT
1 ATTTATATTATTTATTT
901931 A
1 A
901932 CTAAATTTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
14 4 0.14
15 9 0.32
16 13 0.46
17 2 0.07
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (17 bp):
ATTTATATTATTTATTT
Found at i:901918 original size:19 final size:20
Alignment explanation
Indices: 901889--901931 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
901879 GGTTAATTTA
901889 TTTATTTA-TTTATTTATATT
1 TTTATTTATTTTA-TTATATT
*
901909 TTTA-TTATTTTATTATTTT
1 TTTATTTATTTTATTATATT
901928 TTTA
1 TTTA
901932 CTAAATTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTATTTATTTTATTATATT
Found at i:902109 original size:6 final size:7
Alignment explanation
Indices: 902090--902120 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
902080 GATTCGGTTT
902090 TTTTAAA
1 TTTTAAA
902097 TTTTAAA
1 TTTTAAA
902104 -TTTAAA
1 TTTTAAA
902110 TTTTAAA
1 TTTTAAA
902117 TTTT
1 TTTT
902121 CGCAGTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (7 bp):
TTTTAAA
Found at i:902109 original size:13 final size:13
Alignment explanation
Indices: 902091--902119 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
902081 ATTCGGTTTT
902091 TTTAAATTTTAAA
1 TTTAAATTTTAAA
902104 TTTAAATTTTAAA
1 TTTAAATTTTAAA
902117 TTT
1 TTT
902120 TCGCAGTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TTTAAATTTTAAA
Found at i:903904 original size:40 final size:40
Alignment explanation
Indices: 903860--903997 Score: 102
Period size: 40 Copynumber: 3.2 Consensus size: 40
903850 AATATCATAT
903860 AATTCATGTACATAATGTTCTCCTTAAATAAACTAGAGTA
1 AATTCATGTACATAATGTTCTCCTTAAATAAACTAGAGTA
* * *
903900 AATTCATGCTAGATTTTAAACACAT-TCTCTAACCTTAAATTAA-TATCA-TA
1 AATTCATG-TACA---T----A-ATGT-TCT--CCTTAAATAAACTA-GAGTA
903950 TAATTCATGTACATAATGTTCTCCTTAAATAAACTAGAGTA
1 -AATTCATGTACATAATGTTCTCCTTAAATAAACTAGAGTA
903991 AATTCAT
1 AATTCAT
903998 ACTAGATTTT
Statistics
Matches: 75, Mismatches: 6, Indels: 34
0.65 0.05 0.30
Matches are distributed among these distances:
40 26 0.35
41 7 0.09
42 5 0.07
43 2 0.03
44 1 0.01
47 1 0.01
48 2 0.03
49 5 0.07
50 7 0.09
51 19 0.25
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.37
Consensus pattern (40 bp):
AATTCATGTACATAATGTTCTCCTTAAATAAACTAGAGTA
Found at i:903984 original size:91 final size:91
Alignment explanation
Indices: 903829--904012 Score: 359
Period size: 91 Copynumber: 2.0 Consensus size: 91
903819 CAATTACCCT
903829 CACATTCTCTAACCTTAAATTAATATCATATAATTCATGTACATAATGTTCTCCTTAAATAAACT
1 CACATTCTCTAACCTTAAATTAATATCATATAATTCATGTACATAATGTTCTCCTTAAATAAACT
*
903894 AGAGTAAATTCATGCTAGATTTTAAA
66 AGAGTAAATTCATACTAGATTTTAAA
903920 CACATTCTCTAACCTTAAATTAATATCATATAATTCATGTACATAATGTTCTCCTTAAATAAACT
1 CACATTCTCTAACCTTAAATTAATATCATATAATTCATGTACATAATGTTCTCCTTAAATAAACT
903985 AGAGTAAATTCATACTAGATTTTAAA
66 AGAGTAAATTCATACTAGATTTTAAA
904011 CA
1 CA
904013 TGAAATCACA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 92 1.00
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.37
Consensus pattern (91 bp):
CACATTCTCTAACCTTAAATTAATATCATATAATTCATGTACATAATGTTCTCCTTAAATAAACT
AGAGTAAATTCATACTAGATTTTAAA
Found at i:907174 original size:82 final size:82
Alignment explanation
Indices: 906955--907228 Score: 315
Period size: 82 Copynumber: 3.4 Consensus size: 82
906945 CCAAATAATG
* * * ** *
906955 GTGGTGCAATATCATCTTGTTCAAC-TTTTCACTGGTCATTCAATGCATAATTTAAACAATTTTT
1 GTGGTGCATTATCATCTTCTGCAACTTTTTCAAAGGTCATTCAATGCATAATTTAAACAA-ATTT
**
907019 CAGAAAATGGGTGAAATA
65 CAGAAAACAGGTGAAATA
* *
907037 GT-ATGCATTATCATCTTCTGCAAC-TTTTCAAAGGTTATTCAATGCATAATTTAAACAAAGTTT
1 GTGGTGCATTATCATCTTCTGCAACTTTTTCAAAGGTCATTCAATGCATAATTTAAACAAA-TTT
**
907100 CTTAAAACAGGTGAAATA
65 CAGAAAACAGGTGAAATA
* *
907118 GTGGTGCATTATCATCTTCTGC-ACTTTTTTAGAGGTCATTCAATGCATAATTTAAACAACATTT
1 GTGGTGCATTATCATCTTCTGCAACTTTTTCAAAGGTCATTCAATGCATAATTTAAACAA-ATTT
* *
907182 CAGACAACAGATGAAATA
65 CAGAAAACAGGTGAAATA
* *
907200 GTGGTATC-TTATCATCTTCAGCAACTTTT
1 GTGGT-GCATTATCATCTTCTGCAACTTTT
907229 CAGTGATGTA
Statistics
Matches: 164, Mismatches: 22, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
81 70 0.43
82 86 0.52
83 8 0.05
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.36
Consensus pattern (82 bp):
GTGGTGCATTATCATCTTCTGCAACTTTTTCAAAGGTCATTCAATGCATAATTTAAACAAATTTC
AGAAAACAGGTGAAATA
Found at i:909392 original size:16 final size:16
Alignment explanation
Indices: 909371--909411 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
909361 AAATAAAACG
909371 ATATAATCATTATATC
1 ATATAATCATTATATC
909387 ATATAATCATTATATC
1 ATATAATCATTATATC
909403 ATATAATCA
1 ATATAATCA
909412 CTGTTTTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.41
Consensus pattern (16 bp):
ATATAATCATTATATC
Found at i:909395 original size:8 final size:8
Alignment explanation
Indices: 909371--909411 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
909361 AAATAAAACG
909371 ATATAATC
1 ATATAATC
909379 AT-TATATC
1 ATATA-ATC
909387 ATATAATC
1 ATATAATC
909395 AT-TATATC
1 ATATA-ATC
909403 ATATAATC
1 ATATAATC
909411 A
1 A
909412 CTGTTTTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
7 4 0.14
8 21 0.72
9 4 0.14
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.41
Consensus pattern (8 bp):
ATATAATC
Found at i:910014 original size:19 final size:19
Alignment explanation
Indices: 909990--910026 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
909980 ATGACCAACA
*
909990 AAATCGCAATGCGATCTCT
1 AAATCGCAACGCGATCTCT
910009 AAATCGCAACGCGATCTC
1 AAATCGCAACGCGATCTC
910027 CAGTATCTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (19 bp):
AAATCGCAACGCGATCTCT
Found at i:910316 original size:22 final size:22
Alignment explanation
Indices: 910290--910340 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
910280 CTATGGCGAC
910290 ATCCGTCCCCATCTCCGACAAA
1 ATCCGTCCCCATCTCCGACAAA
* *
910312 ATCCGTCCCCATCTCCGGCGAA
1 ATCCGTCCCCATCTCCGACAAA
910334 ATCCGTC
1 ATCCGTC
910341 TATCTCCATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.22, C:0.45, G:0.14, T:0.20
Consensus pattern (22 bp):
ATCCGTCCCCATCTCCGACAAA
Found at i:910822 original size:21 final size:21
Alignment explanation
Indices: 910796--910836 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
910786 TAGTAAAATC
910796 CGTGTTGCGATAATCATTTTT
1 CGTGTTGCGATAATCATTTTT
**
910817 CGTGTTGCGATTTTCATTTT
1 CGTGTTGCGATAATCATTTT
910837 CGCATCACGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.15, C:0.15, G:0.20, T:0.51
Consensus pattern (21 bp):
CGTGTTGCGATAATCATTTTT
Found at i:911704 original size:24 final size:24
Alignment explanation
Indices: 911677--911726 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
911667 CTGAAACATC
*
911677 ATCAAAATCCGAGTATTGATCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* * *
911701 ATCAAAGTTCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
911725 AT
1 AT
911727 TAAATTTCGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:911735 original size:24 final size:24
Alignment explanation
Indices: 911689--911735 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
911679 CAAAATCCGA
*
911689 GTATTGATCAAGATCAAAGTTCGG
1 GTATTGACCAAGATCAAAGTTCGG
* *
911713 GTATTGACCAAGATTAAATTTCG
1 GTATTGACCAAGATCAAAGTTCG
911736 AATACTGACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (24 bp):
GTATTGACCAAGATCAAAGTTCGG
Found at i:913984 original size:45 final size:45
Alignment explanation
Indices: 913933--914030 Score: 160
Period size: 45 Copynumber: 2.2 Consensus size: 45
913923 ATATGAATTA
* * *
913933 TTTAAATTATTTATTCATGTTATTTTAAAAGTAAACTAATTTTCC
1 TTTAAATTATTTATTCACGTTATTTTAAAAGTAAACCAATTTTAC
*
913978 TTTAAATTATTTATTCACGTTATTTTAAAATTAAACCAATTTTAC
1 TTTAAATTATTTATTCACGTTATTTTAAAAGTAAACCAATTTTAC
914023 TTTAAATT
1 TTTAAATT
914031 GAATCATTTC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (45 bp):
TTTAAATTATTTATTCACGTTATTTTAAAAGTAAACCAATTTTAC
Found at i:914304 original size:16 final size:15
Alignment explanation
Indices: 914283--914340 Score: 57
Period size: 18 Copynumber: 3.7 Consensus size: 15
914273 GTACCTATTC
914283 ATAATACAAAAAATAT
1 ATAATA-AAAAAATAT
914299 ATAATAAAAAAATACAT
1 ATAATAAAAAAAT--AT
*
914316 GTAAATAAAAAAATAT
1 AT-AATAAAAAAATAT
914332 -T-ATAAAAAA
1 ATAATAAAAAA
914341 TAAAAAAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
13 8 0.21
15 8 0.21
16 8 0.21
17 3 0.08
18 11 0.29
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (15 bp):
ATAATAAAAAAATAT
Found at i:914730 original size:201 final size:201
Alignment explanation
Indices: 914385--914793 Score: 615
Period size: 201 Copynumber: 2.0 Consensus size: 201
914375 AAAAAAGAAG
* *
914385 AGTGTAAGTAAAAGTAGTAAAGTATGTAGTAAATGATGCAGGTGTGTAAAAAAGTACTAAAGCAA
1 AGTGTAAGTAAAAATAGTAAAGCATGTAGTAAATGATGCAGGTGTGTAAAAAAGTACTAAAGCAA
* * *
914450 ATAGTAGAGAATTTTTTTAGAAGTGTTAAAAATAATTGAAAAAAATAAATTTAAAAATCAAAATA
66 ATAGTAGAGAATTTGTTTAGAAGTGTTAAAAATAAATAAAAAAAATAAATTTAAAAATCAAAATA
* * * *
914515 TTAAAAAAATTCACAATCAAAGTAAGAAGTAAAGAAGGA-AATGGTAGGAAACATAGAAACTCTA
131 TTAAAAAAATTCACAACCAAAGTAAGAAGTAAAGAA-GACAACGGGAGGAAACACAGAAACTCTA
914579 GTTTCAA
195 GTTTCAA
* * *
914586 AGTGTAAGTAAAAATAGTAAAGCATGTAGTAGATGATGTAGGTGTGTAAGACAA-TACTAAAGCA
1 AGTGTAAGTAAAAATAGTAAAGCATGTAGTAAATGATGCAGGTGTGTAA-AAAAGTACTAAAGCA
* * * * *
914650 AATAGTAGAGAATTTGTTTGGAAGTGTTAAAAATAAATAAAAAAAATGAATTTCACAATTAAAAT
65 AATAGTAGAGAATTTGTTTAGAAGTGTTAAAAATAAATAAAAAAAATAAATTTAAAAATCAAAAT
* *
914715 ATTAAAAAAATTCACAACCAAAGTAAGAAGTAAAGAAGACAACGGGAGGAAGCACAGAAACTTTA
130 ATTAAAAAAATTCACAACCAAAGTAAGAAGTAAAGAAGACAACGGGAGGAAACACAGAAACTCTA
914780 GTTTCAA
195 GTTTCAA
914787 AGTGTAA
1 AGTGTAA
914794 ACTTTTCATC
Statistics
Matches: 187, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
200 2 0.01
201 182 0.97
202 3 0.02
ACGTcount: A:0.50, C:0.07, G:0.18, T:0.25
Consensus pattern (201 bp):
AGTGTAAGTAAAAATAGTAAAGCATGTAGTAAATGATGCAGGTGTGTAAAAAAGTACTAAAGCAA
ATAGTAGAGAATTTGTTTAGAAGTGTTAAAAATAAATAAAAAAAATAAATTTAAAAATCAAAATA
TTAAAAAAATTCACAACCAAAGTAAGAAGTAAAGAAGACAACGGGAGGAAACACAGAAACTCTAG
TTTCAA
Found at i:919480 original size:25 final size:24
Alignment explanation
Indices: 919452--919500 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
919442 AACTTCTTCT
919452 ATTTCAATAATTCACTCAAAAACTC
1 ATTTCAATAATTCAC-CAAAAACTC
* * *
919477 ATTTTAGTAATTCACCAATAACTC
1 ATTTCAATAATTCACCAAAAACTC
919501 CTCATTCATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.41, C:0.22, G:0.02, T:0.35
Consensus pattern (24 bp):
ATTTCAATAATTCACCAAAAACTC
Found at i:919969 original size:21 final size:21
Alignment explanation
Indices: 919944--920017 Score: 103
Period size: 21 Copynumber: 3.5 Consensus size: 21
919934 CAATGTCATG
* *
919944 TGGTGGTGATGATGATGATGG
1 TGGTGGTGGTGATGATGATGA
919965 TGGTGGTGGTGATGATGATGA
1 TGGTGGTGGTGATGATGATGA
* *
919986 TGGTGGTGGTGGTGGTGATGA
1 TGGTGGTGGTGATGATGATGA
*
920007 TGATGGTGGTG
1 TGGTGGTGGTG
920018 GTAGTGGTGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 48 1.00
ACGTcount: A:0.15, C:0.00, G:0.51, T:0.34
Consensus pattern (21 bp):
TGGTGGTGGTGATGATGATGA
Found at i:919975 original size:24 final size:24
Alignment explanation
Indices: 919943--920044 Score: 150
Period size: 24 Copynumber: 4.2 Consensus size: 24
919933 TCAATGTCAT
919943 GTGGTGGTGATGATGATGATGGTG
1 GTGGTGGTGATGATGATGATGGTG
919967 GTGGTGGTGATGATGATGATGGTG
1 GTGGTGGTGATGATGATGATGGTG
*
919991 GTGGTGGTGGTGATGATGATGGTG
1 GTGGTGGTGATGATGATGATGGTG
* * * **
920015 GTGGTAGTGGTGGTGATGATCATG
1 GTGGTGGTGATGATGATGATGGTG
920039 GTGGTG
1 GTGGTG
920045 ATAATGAAGG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.15, C:0.01, G:0.51, T:0.33
Consensus pattern (24 bp):
GTGGTGGTGATGATGATGATGGTG
Found at i:919981 original size:27 final size:27
Alignment explanation
Indices: 919944--920044 Score: 148
Period size: 27 Copynumber: 3.7 Consensus size: 27
919934 CAATGTCATG
* *
919944 TGGTGGTGATGATGATGATGGTGGTGG
1 TGGTGATGATGATGATGGTGGTGGTGG
919971 TGGTGATGATGATGATGGTGGTGGTGG
1 TGGTGATGATGATGATGGTGGTGGTGG
* *
919998 TGGTGATGATGATGGTGGTGGTAGTGG
1 TGGTGATGATGATGATGGTGGTGGTGG
* *
920025 TGGTGATGATCATGGTGGTG
1 TGGTGATGATGATGATGGTG
920045 ATAATGAAGG
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.15, C:0.01, G:0.50, T:0.34
Consensus pattern (27 bp):
TGGTGATGATGATGATGGTGGTGGTGG
Found at i:920044 original size:3 final size:3
Alignment explanation
Indices: 919943--920029 Score: 66
Period size: 3 Copynumber: 29.0 Consensus size: 3
919933 TCAATGTCAT
* * * * * * * *
919943 GTG GTG GTG ATG ATG ATG ATG GTG GTG GTG GTG ATG ATG ATG ATG GTG
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG
* * * *
919991 GTG GTG GTG GTG ATG ATG ATG GTG GTG GTA GTG GTG GTG
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG
920030 ATGATCATGG
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 76 1.00
ACGTcount: A:0.14, C:0.00, G:0.53, T:0.33
Consensus pattern (3 bp):
GTG
Found at i:920045 original size:15 final size:14
Alignment explanation
Indices: 919968--920046 Score: 60
Period size: 15 Copynumber: 5.7 Consensus size: 14
919958 ATGATGGTGG
919968 TGGTGGTGATGATGA
1 TGGTGGTGATGAT-A
* * *
919983 TGATGGTGGTG--G
1 TGGTGGTGATGATA
919995 TGGTGGTGATGATGA
1 TGGTGGTGATGAT-A
920010 TGGTGGTG--G-TA
1 TGGTGGTGATGATA
920021 GTGGTGGTGATGATCA
1 -TGGTGGTGATGAT-A
920037 TGGTGGTGAT
1 TGGTGGTGAT
920047 AATGAAGGTA
Statistics
Matches: 50, Mismatches: 6, Indels: 16
0.69 0.08 0.22
Matches are distributed among these distances:
11 1 0.02
12 18 0.36
13 1 0.02
14 1 0.02
15 28 0.56
16 1 0.02
ACGTcount: A:0.15, C:0.01, G:0.49, T:0.34
Consensus pattern (14 bp):
TGGTGGTGATGATA
Found at i:920852 original size:20 final size:20
Alignment explanation
Indices: 920829--920869 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
920819 CAACAGTGAT
*
920829 ACCACAATGGCAATTGCGAC
1 ACCACAATGGCAACTGCGAC
920849 ACCACAATGGCAACTGCGAC
1 ACCACAATGGCAACTGCGAC
920869 A
1 A
920870 GATGCCGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.37, C:0.32, G:0.20, T:0.12
Consensus pattern (20 bp):
ACCACAATGGCAACTGCGAC
Found at i:922147 original size:19 final size:19
Alignment explanation
Indices: 922123--922172 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
922113 AATCAAATTT
922123 GGGTATCGATACCGTGTAA
1 GGGTATCGATACCGTGTAA
922142 GGGTATCGATACCGTGTAA
1 GGGTATCGATACCGTGTAA
922161 GGGTATCGATAC
1 GGGTATCGATAC
922173 TACAAGCATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (19 bp):
GGGTATCGATACCGTGTAA
Done.