Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007965.1 Hibiscus syriacus cultivar Beakdansim tig00110395_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37538

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5104--5290
64
2.9
63
86
2
241
35
20
18
26
1.95
5598--5633
12
3.0
12
91
0
63
33
5
25
36
1.79
5626--5683
13
4.2
13
74
20
55
44
8
22
24
1.80
5768--5800
15
2.2
15
100
0
66
15
18
33
33
1.92
8167--8215
2
24.5
2
100
0
98
0
48
0
51
1.00
9669--9737
29
2.4
29
90
0
102
31
17
10
40
1.83
11489--11525
2
18.5
2
94
0
65
45
0
54
0
1.00
17113--17162
20
2.5
21
83
9
68
54
0
4
42
1.19
17136--17179
15
3.0
14
90
6
61
50
0
2
47
1.13
17390--18052
46
14.5
46
89
2
962
33
18
22
25
1.96
17390--18052
183
3.6
182
92
1
1033
33
18
22
25
1.96
17390--18052
137
4.8
136
89
2
963
33
18
22
25
1.96
18759--18868
22
5.0
22
92
0
175
33
13
16
36
1.88
18759--18868
44
2.5
44
95
0
193
33
13
16
36
1.88
19237--19340
54
1.9
54
86
3
147
27
25
13
32
1.94
24983--25086
9
11.1
9
78
10
84
1
16
0
81
0.77
24990--25086
10
10.0
10
75
5
74
2
16
0
81
0.79
24983--25032
16
3.1
16
94
5
84
0
6
0
94
0.33
24985--25032
20
2.3
20
96
3
87
0
6
0
93
0.34
24983--25032
1
50.0
1
87
0
73
0
6
0
94
0.33
24983--25072
17
4.8
19
76
12
73
2
14
0
83
0.74
27885--27915
14
2.2
14
94
0
53
58
6
19
16
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27904--27960
12
4.2
13
72
16
53
61
7
12
19
1.53
29504--29560
22
2.5
23
80
11
73
70
5
0
24
1.08
29524--29560
15
2.7
13
84
15
56
70
2
0
27
1.01
29524--29562
14
2.8
14
88
11
62
69
2
0
28
1.02
36548--36603
24
2.4
23
84
3
76
53
26
17
1
1.54

Tables:   1

The End!