Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007967.1 Hibiscus syriacus cultivar Beakdansim tig00110402_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2476418
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 11 of 11
Found at i:2311938 original size:17 final size:18
Alignment explanation
Indices: 2311905--2311945 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
2311895 TTTCTTTCAA
*
2311905 ATTTTT-TATTACTTATT
1 ATTTTTATATTACATATT
2311922 ATTTTTATATTA-ATATT
1 ATTTTTATATTACATATT
2311939 -TTTTTAT
1 ATTTTTAT
2311946 TCAGGTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 7 0.32
17 10 0.45
18 5 0.23
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (18 bp):
ATTTTTATATTACATATT
Found at i:2314302 original size:7 final size:7
Alignment explanation
Indices: 2314267--2314307 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
2314257 TTTTCATATA
2314267 TGCATTT
1 TGCATTT
2314274 T-CATTT
1 TGCATTT
2314280 TGCATCTT
1 TGCAT-TT
2314288 TGCATTT
1 TGCATTT
*
2314295 TTCATTT
1 TGCATTT
2314302 TGCATT
1 TGCATT
2314308 CATACTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 6 0.20
7 17 0.57
8 7 0.23
ACGTcount: A:0.15, C:0.17, G:0.10, T:0.59
Consensus pattern (7 bp):
TGCATTT
Found at i:2318702 original size:114 final size:114
Alignment explanation
Indices: 2318501--2318834 Score: 533
Period size: 114 Copynumber: 2.9 Consensus size: 114
2318491 CACATTCTCG
*
2318501 TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTTTTTGAGTTATCTGATCTGATTT
1 TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTATTTGAGTTATCTGATCTGATTT
* *
2318566 GGTATGAACCCCAAAACTAATCATTGGATTTAAAAGATGAATTCGCTCA
66 GGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAATTCGCTCA
* * *
2318615 TAGTAGAAATAAGGAGACCTAATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATCTGATTT
1 TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTATTTGAGTTATCTGATCTGATTT
* *
2318680 GGTATGAACCCCAAAACCAATCATTAGATTTGAAAGATGAATTTGCTCA
66 GGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAATTCGCTCA
* * * * *
2318729 TAGTAGAAATAAGGATACCCAATAGCATCTTCTGGAAGTGTTATTTAAGTTATCTGATATGGTTC
1 TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTATTTGAGTTATCTGATCTGATTT
* *
2318794 GGTAGGAACCCCAGAACCAATCATTGGATTTGAAAGATGAA
66 GGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAA
2318835 CATGATCATC
Statistics
Matches: 202, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 202 1.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (114 bp):
TAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTATTTGAGTTATCTGATCTGATTT
GGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAATTCGCTCA
Found at i:2321272 original size:21 final size:22
Alignment explanation
Indices: 2321244--2321297 Score: 92
Period size: 21 Copynumber: 2.5 Consensus size: 22
2321234 ATCTACACTC
2321244 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
2321266 TT-AAAGATTATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
2321287 TTCAAAGATGA
1 TTCAAAGATGA
2321298 AAGCTTTATG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 20 0.69
22 9 0.31
ACGTcount: A:0.35, C:0.11, G:0.13, T:0.41
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:2322121 original size:165 final size:167
Alignment explanation
Indices: 2321814--2322138 Score: 521
Period size: 165 Copynumber: 2.0 Consensus size: 167
2321804 AAAATTAGCA
2321814 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAACAGAATGAGAAAACG
1 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAACAGAATGAGAAAACG
* ** *
2321879 ATTTTCATAGTTTCTAATTTTATCTTTTCTAAAATAAAATTGTTGAAAAGTAAGAAAATGATTTT
66 ATTTCCATAGTTTCTAATTCAATCTTTTCTAAAATAAAATTGTTGAAAAGTAAGAAAATGATTTC
*
2321944 CTTAGTTTTTTTACTTAGTAAACTATTTCCAACAGCC
131 CTTAGTTTTTTTACTTAATAAACTATTTCCAACAGCC
** *
2321981 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTT-TGAAAA-ATAATGAGAAAACG
1 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAACAGAATGAGAAAACG
* * *
2322044 ATTTCCATAGTTTCTTATTCAATCTTTTCTAAAAATGACATTGTTGAAAAGTAAGAAAATGATTT
66 ATTTCCATAGTTTCTAATTCAATCTTTTCT-AAAATAAAATTGTTGAAAAGTAAGAAAATGATTT
2322109 CCTTAG-TTTTTTACTTAATAAACTATTTCC
130 CCTTAGTTTTTTTACTTAATAAACTATTTCC
2322139 CACATCTGTA
Statistics
Matches: 146, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
165 62 0.42
166 41 0.28
167 43 0.29
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (167 bp):
TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAACAGAATGAGAAAACG
ATTTCCATAGTTTCTAATTCAATCTTTTCTAAAATAAAATTGTTGAAAAGTAAGAAAATGATTTC
CTTAGTTTTTTTACTTAATAAACTATTTCCAACAGCC
Found at i:2322267 original size:76 final size:76
Alignment explanation
Indices: 2322141--2322628 Score: 886
Period size: 76 Copynumber: 6.4 Consensus size: 76
2322131 CTATTTCCCA
*
2322141 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2322206 AACCTTAGGGT
66 AACCTTAGGGT
**
2322217 CATCTGTAAGTTTTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2322282 AACCTTAGGGT
66 AACCTTAGGGT
2322293 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2322358 AACCTTAGGGT
66 AACCTTAGGGT
2322369 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2322434 AACCTTAGGGT
66 AACCTTAGGGT
*
2322445 CATCTGTAAGTCCTGAAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2322510 AACCTTAGGGT
66 AACCTTAGGGT
*
2322521 CATCTATAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
* *
2322586 AATCTTCGGGT
66 AACCTTAGGGT
* *
2322597 CATCTGTAAGCCCTTCAGTGCATGATGATTTC
1 CATCTGTAAGTCCTGCAGTGCATGATG-TTTC
2322629 AATATTTCAT
Statistics
Matches: 398, Mismatches: 13, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
76 394 0.99
77 4 0.01
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AACCTTAGGGT
Found at i:2322780 original size:2 final size:2
Alignment explanation
Indices: 2322773--2322797 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2322763 TTATTATTAT
2322773 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
2322798 TACAAGCCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2324028 original size:15 final size:15
Alignment explanation
Indices: 2324008--2324037 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2323998 GGATTTCTTA
2324008 ATTTTAATAATTGAT
1 ATTTTAATAATTGAT
*
2324023 ATTTTAATCATTGAT
1 ATTTTAATAATTGAT
2324038 TAATAATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.03, G:0.07, T:0.53
Consensus pattern (15 bp):
ATTTTAATAATTGAT
Found at i:2334321 original size:43 final size:43
Alignment explanation
Indices: 2334260--2334391 Score: 255
Period size: 43 Copynumber: 3.1 Consensus size: 43
2334250 CATCTTTGCA
2334260 TCAAACATTCATCATCATGTGCAATAAGGACATTTTCCCTTTC
1 TCAAACATTCATCATCATGTGCAATAAGGACATTTTCCCTTTC
2334303 TCAAACATTCATCATCATGTGCAATAAGGACATTTTCCCTTTC
1 TCAAACATTCATCATCATGTGCAATAAGGACATTTTCCCTTTC
*
2334346 TCAAACATTCATCATCATGTGTAATAAGGACATTTTCCCTTTC
1 TCAAACATTCATCATCATGTGCAATAAGGACATTTTCCCTTTC
2334389 TCA
1 TCA
2334392 TGAGGAAAAT
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 88 1.00
ACGTcount: A:0.30, C:0.25, G:0.09, T:0.36
Consensus pattern (43 bp):
TCAAACATTCATCATCATGTGCAATAAGGACATTTTCCCTTTC
Found at i:2335346 original size:54 final size:55
Alignment explanation
Indices: 2335219--2335353 Score: 182
Period size: 54 Copynumber: 2.5 Consensus size: 55
2335209 AGATAACCAG
* * * *
2335219 CCATCCTCATCACGTAGGAACCATGTTATCATCATTTATTCCTAAAGATGGTCAT
1 CCATCCTCATCACGTAGGAACCATGTTATCACCATTTATCCCTAAAGATGGCCAA
* * ** *
2335274 CCATTCTCATCACTTAGGAACTGTGTTATCACCA-TTATCCCTAAATATGGCCAA
1 CCATCCTCATCACGTAGGAACCATGTTATCACCATTTATCCCTAAAGATGGCCAA
2335328 CCATCCTCATCACGTAGGAACCATGT
1 CCATCCTCATCACGTAGGAACCATGT
2335354 CATCCACCGA
Statistics
Matches: 67, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
54 38 0.57
55 29 0.43
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (55 bp):
CCATCCTCATCACGTAGGAACCATGTTATCACCATTTATCCCTAAAGATGGCCAA
Found at i:2337597 original size:13 final size:13
Alignment explanation
Indices: 2337579--2337608 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
2337569 TTTTTCAAAG
2337579 TTTTCAAAGAAAA
1 TTTTCAAAGAAAA
2337592 TTTTCAAAGAAAA
1 TTTTCAAAGAAAA
2337605 TTTT
1 TTTT
2337609 AAAATTTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (13 bp):
TTTTCAAAGAAAA
Found at i:2341061 original size:26 final size:26
Alignment explanation
Indices: 2341032--2341088 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
2341022 GTGAAAAACA
*
2341032 AATT-TATGAGAAGCAATAGTATATAT
1 AATTCTATGA-AAACAATAGTATATAT
* *
2341058 AATTTCTATGAAAATAATATTATATAT
1 AA-TTCTATGAAAACAATAGTATATAT
2341085 AATT
1 AATT
2341089 AAACTAAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 4 0.15
27 17 0.65
28 5 0.19
ACGTcount: A:0.47, C:0.04, G:0.09, T:0.40
Consensus pattern (26 bp):
AATTCTATGAAAACAATAGTATATAT
Found at i:2348373 original size:14 final size:14
Alignment explanation
Indices: 2348362--2348396 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
2348352 AAAATGAATT
2348362 ACATTTTCTGAAAA
1 ACATTTTCTGAAAA
*
2348376 ACGTTTTCTGAAAA
1 ACATTTTCTGAAAA
*
2348390 ACGTTTT
1 ACATTTT
2348397 ACGATGTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.40
Consensus pattern (14 bp):
ACATTTTCTGAAAA
Found at i:2348525 original size:34 final size:36
Alignment explanation
Indices: 2348452--2348524 Score: 111
Period size: 34 Copynumber: 2.2 Consensus size: 36
2348442 TTTTTTAAAA
2348452 ATTATTTATTACAAATATTAAATATAATTTAATATT
1 ATTATTTATTACAAATATTAAATATAATTTAATATT
2348488 ATTATTT-TTA-AAATATTAAA-ATAATTT-AT-TT
1 ATTATTTATTACAAATATTAAATATAATTTAATATT
2348519 ATTATT
1 ATTATT
2348525 AAATTTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
31 8 0.22
32 2 0.05
33 7 0.19
34 10 0.27
35 3 0.08
36 7 0.19
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.53
Consensus pattern (36 bp):
ATTATTTATTACAAATATTAAATATAATTTAATATT
Found at i:2348685 original size:23 final size:23
Alignment explanation
Indices: 2348636--2348686 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
2348626 GTGTTATATT
**
2348636 ATATTTTAAAAATATTAATTAGT
1 ATATTTTAAAAATATTAATTAAA
* * *
2348659 ATATTTTAAATATCTTTATTAAA
1 ATATTTTAAAAATATTAATTAAA
2348682 ATATT
1 ATATT
2348687 ATTAGATTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (23 bp):
ATATTTTAAAAATATTAATTAAA
Found at i:2348742 original size:19 final size:19
Alignment explanation
Indices: 2348674--2348754 Score: 64
Period size: 19 Copynumber: 4.3 Consensus size: 19
2348664 TTAAATATCT
2348674 TTATTAA-AATATTATTAGA
1 TTATTAATAATATTATTA-A
2348693 TTATTATATTAATATTA--AA
1 TTATTA-A-TAATATTATTAA
* *
2348712 TATATAAATAATATTATTCA
1 T-TATTAATAATATTATTAA
*
2348732 TTATTAATAAT-TTAATAA
1 TTATTAATAATATTATTAA
2348750 -TATTA
1 TTATTA
2348755 TTTCTATGAA
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
17 5 0.10
18 13 0.25
19 18 0.35
20 8 0.16
22 7 0.14
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (19 bp):
TTATTAATAATATTATTAA
Found at i:2348831 original size:23 final size:23
Alignment explanation
Indices: 2348801--2348851 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
2348791 TTAAAATAAA
*
2348801 AATATAATAGCTTATATTATTAT
1 AATATAATAGATTATATTATTAT
* *
2348824 AATATAATTGATTATTTTATTAT
1 AATATAATAGATTATATTATTAT
2348847 AATAT
1 AATAT
2348852 TAAAAATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (23 bp):
AATATAATAGATTATATTATTAT
Found at i:2348869 original size:22 final size:22
Alignment explanation
Indices: 2348841--2348882 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
2348831 TTGATTATTT
2348841 TATTATAATATTAAAAATATAA
1 TATTATAATATTAAAAATATAA
* *
2348863 TATTATATTATTATAAATAT
1 TATTATAATATTAAAAATAT
2348883 TTATAAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TATTATAATATTAAAAATATAA
Found at i:2348886 original size:10 final size:10
Alignment explanation
Indices: 2348873--2348905 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
2348863 TATTATATTA
2348873 TTATAAATAT
1 TTATAAATAT
2348883 TTATAAATAT
1 TTATAAATAT
2348893 ATTATAAATAT
1 -TTATAAATAT
2348904 TT
1 TT
2348906 TAATAATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TTATAAATAT
Found at i:2348891 original size:32 final size:32
Alignment explanation
Indices: 2348812--2348893 Score: 98
Period size: 32 Copynumber: 2.6 Consensus size: 32
2348802 ATATAATAGC
* *
2348812 TTATATTATTAT-AATATAATTGATTATTTTA
1 TTATAATATTATAAATATAATTGATTATATTA
*
2348843 TTATAATATTAAAAATATAA-T-ATTATATTA
1 TTATAATATTATAAATATAATTGATTATATTA
2348873 TTATAAATATTTATAAATATA
1 TTAT-AATA-TTATAAATATA
2348894 TTATAAATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
30 12 0.27
31 15 0.34
32 17 0.39
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (32 bp):
TTATAATATTATAAATATAATTGATTATATTA
Found at i:2349760 original size:37 final size:38
Alignment explanation
Indices: 2349719--2349819 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 38
2349709 ATTATTACAT
**
2349719 TTTATTAAAATAA-AATTATTATAAATTATATTTATTA
1 TTTATTAAAATAATAATTATTATAAATTATATAAATTA
*
2349756 TTTATTAAAATAAGAATAATATATTATTAATTATATAAATTA
1 TTTATTAAAAT---AATAAT-TATTATAAATTATATAAATTA
*
2349798 ATTATTAAAATAATAA-TATTAT
1 TTTATTAAAATAATAATTATTAT
2349820 TAAAACATTA
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
37 17 0.31
39 5 0.09
40 2 0.04
41 3 0.05
42 28 0.51
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (38 bp):
TTTATTAAAATAATAATTATTATAAATTATATAAATTA
Found at i:2349789 original size:42 final size:42
Alignment explanation
Indices: 2349735--2349815 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
2349725 AAAATAAAAT
** *
2349735 TATTATAAATTATATTTATTATTTATTAAAATAAGAATAATA
1 TATTATAAATTATATAAATTAATTATTAAAATAAGAATAATA
* *
2349777 TATTATTAATTATATAAATTAATTATTAAAATAATAATA
1 TATTATAAATTATATAAATTAATTATTAAAATAAGAATA
2349816 TTATTAAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (42 bp):
TATTATAAATTATATAAATTAATTATTAAAATAAGAATAATA
Found at i:2349835 original size:17 final size:17
Alignment explanation
Indices: 2349797--2349836 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
2349787 TATATAAATT
*
2349797 AATTATTAAAATAATAA
1 AATTATTAAAACAATAA
* *
2349814 TATTATTAAAACATTAA
1 AATTATTAAAACAATAA
2349831 AATTAT
1 AATTAT
2349837 ACTATTAAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (17 bp):
AATTATTAAAACAATAA
Found at i:2349913 original size:28 final size:26
Alignment explanation
Indices: 2349878--2349954 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 26
2349868 TTTTGAATAT
2349878 TAAATAATTTAATAATATTATTTTTA
1 TAAATAATTTAATAATATTATTTTTA
* *
2349904 TAAAATTAA-TAAATAAATATTAATTTTA
1 T-AAA-TAATTTAAT-AATATTATTTTTA
* *
2349932 TTAATAATTTAGTATATATTATT
1 TAAATAATTTAATA-ATATTATT
2349955 AAATTAAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
26 5 0.12
27 19 0.47
28 16 0.40
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (26 bp):
TAAATAATTTAATAATATTATTTTTA
Found at i:2349992 original size:32 final size:32
Alignment explanation
Indices: 2349931--2350002 Score: 78
Period size: 32 Copynumber: 2.3 Consensus size: 32
2349921 TATTAATTTT
* *
2349931 ATTAATAATTTAGTATATATTATTAAATTAAA
1 ATTAATAATTTAGTATATAATAATAAATTAAA
*
2349963 ATTAA-AATATTA-TATATAATAATATAATTATA
1 ATTAATAAT-TTAGTATATAATAATA-AATTAAA
2349995 A-TAATAAT
1 ATTAATAAT
2350003 AAATATACTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
31 16 0.47
32 18 0.53
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (32 bp):
ATTAATAATTTAGTATATAATAATAAATTAAA
Found at i:2350009 original size:31 final size:32
Alignment explanation
Indices: 2349974--2350041 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 32
2349964 TTAAAATATT
*
2349974 ATATA-TAATAATATAATTATAATAAT-AATAA
1 ATATACTAAT-ATATAATTAAAATAATCAATAA
* * *
2350005 ATATACTACTATATTATTAAAATTATCAATAA
1 ATATACTAATATATAATTAAAATAATCAATAA
2350037 ATATA
1 ATATA
2350042 ATTTAAAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
31 18 0.58
32 13 0.42
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (32 bp):
ATATACTAATATATAATTAAAATAATCAATAA
Found at i:2350684 original size:3 final size:3
Alignment explanation
Indices: 2350676--2350743 Score: 66
Period size: 3 Copynumber: 22.0 Consensus size: 3
2350666 TTTTTTCATT
** *
2350676 TTA TTA TTA TTA TTA AAA TTA TCA TTA TTA TTA TGTA TTA -TA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA T-TA
*
2350722 TATA TTA TTA TTA TTA TAA TTA
1 T-TA TTA TTA TTA TTA TTA TTA
2350744 CAAGCCCAAG
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
2 2 0.04
3 42 0.78
4 10 0.19
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:2352980 original size:23 final size:25
Alignment explanation
Indices: 2352931--2352988 Score: 84
Period size: 23 Copynumber: 2.4 Consensus size: 25
2352921 CTTTCAAATT
*
2352931 TTTTATTACTTATTATTTTTATATTA
1 TTTTATTA-ATATTATTTTTATATTA
2352957 TTTTATTAATATT-TTTTTAT-TTA
1 TTTTATTAATATTATTTTTATATTA
2352980 TTTTATTAA
1 TTTTATTAA
2352989 GGTATTAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
23 12 0.39
24 7 0.23
25 4 0.13
26 8 0.26
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.71
Consensus pattern (25 bp):
TTTTATTAATATTATTTTTATATTA
Found at i:2358311 original size:7 final size:7
Alignment explanation
Indices: 2358298--2358370 Score: 56
Period size: 7 Copynumber: 9.3 Consensus size: 7
2358288 CTCATCCAGC
2358298 AAAGAAA
1 AAAGAAA
*
2358305 GAAGAAA
1 AAAGAAA
2358312 AAAGAAA
1 AAAGAAA
2358319 AATGATGAAA
1 AA--A-GAAA
2358329 AAAGAAA
1 AAAGAAA
2358336 AATGAGAAA
1 AA--AGAAA
2358345 AAAGGAAAA
1 AAA-G-AAA
*
2358354 AAAGGGAA
1 AAA-GAAA
2358362 AAAGAAA
1 AAAGAAA
2358369 AA
1 AA
2358371 TGGGAGAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
7 26 0.47
8 7 0.13
9 16 0.29
10 6 0.11
ACGTcount: A:0.75, C:0.00, G:0.21, T:0.04
Consensus pattern (7 bp):
AAAGAAA
Found at i:2358333 original size:24 final size:24
Alignment explanation
Indices: 2358301--2358372 Score: 67
Period size: 24 Copynumber: 2.9 Consensus size: 24
2358291 ATCCAGCAAA
* *
2358301 GAAAGAAGAAAAAAGAAAAATGAT
1 GAAAAAAGAAAAAAGAAAAATGAG
2358325 GAAAAAAGAAAAATGAGAAAAA--AG
1 GAAAAAAGAAAAA--AGAAAAATGAG
*
2358349 GAAAAAAAGGGAAAAAGAAAAATG
1 G-AAAAAA-GAAAAAAGAAAAATG
2358373 GGAGAAATTG
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
24 21 0.54
25 6 0.15
26 12 0.31
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (24 bp):
GAAAAAAGAAAAAAGAAAAATGAG
Found at i:2358336 original size:16 final size:16
Alignment explanation
Indices: 2358307--2358372 Score: 80
Period size: 17 Copynumber: 4.0 Consensus size: 16
2358297 CAAAGAAAGA
2358307 AGAAAAAAGAAAAATG
1 AGAAAAAAGAAAAATG
2358323 ATGAAAAAAGAAAAATG
1 A-GAAAAAAGAAAAATG
*
2358340 AGAAAAAAGGAAAAA-A
1 AGAAAAAA-GAAAAATG
*
2358356 AGGGAAAAAGAAAAATG
1 A-GAAAAAAGAAAAATG
2358373 GGAGAAATTG
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
16 15 0.35
17 28 0.65
ACGTcount: A:0.73, C:0.00, G:0.21, T:0.06
Consensus pattern (16 bp):
AGAAAAAAGAAAAATG
Found at i:2358346 original size:33 final size:33
Alignment explanation
Indices: 2358307--2358372 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
2358297 CAAAGAAAGA
* *
2358307 AGAAAAAA-GAAAAATGATGAAAAAAGAAAAATG
1 AGAAAAAAGGAAAAA-AAGGAAAAAAGAAAAATG
*
2358340 AGAAAAAAGGAAAAAAAGGGAAAAAGAAAAATG
1 AGAAAAAAGGAAAAAAAGGAAAAAAGAAAAATG
2358373 GGAGAAATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 23 0.79
34 6 0.21
ACGTcount: A:0.73, C:0.00, G:0.21, T:0.06
Consensus pattern (33 bp):
AGAAAAAAGGAAAAAAAGGAAAAAAGAAAAATG
Found at i:2362763 original size:22 final size:22
Alignment explanation
Indices: 2362730--2362784 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
2362720 ATCTACACTC
*
2362730 TTCAAAGATGATATATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
* *
2362752 TTTAAATATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
2362774 TTCAAAGATGA
1 TTCAAAGATGA
2362785 AAGCTTTATT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.44
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:2363610 original size:165 final size:165
Alignment explanation
Indices: 2363297--2363623 Score: 521
Period size: 165 Copynumber: 2.0 Consensus size: 165
2363287 CACAAGAATG
*
2363297 AGCATTATCTTGAGATTGGGTCATGTTACCCAATAAACATGATATTTTGAAAAATAATGAGAAAA
1 AGCATTATCTTGAGATTGGGGCATGTTACCCAATAAACATGATATTTTGAAAAATAATGAGAAAA
* * ** *
2363362 CGATTTCCATAGTTTCTCATTTTATCTTTTCGAAAATGAAATTGTTGAAAAGTAAGAAAACGATT
66 CAATTTCCATAGTTTCCCATTCAATCTTTTCAAAAATGAAATTGTTGAAAAGTAAGAAAACGATT
* * * *
2363427 TTCTTAGTTTTTTTACTTAGTAAACTATTTCCAAC
131 TCCATAGTTATCTTACTTAGTAAACTATTTCCAAC
* *
2363462 AGCATTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTTGAAAAATAATGAGAAAA
1 AGCATTATCTTGAGATTGGGGCATGTTACCCAATAAACATGATATTTTGAAAAATAATGAGAAAA
*
2363527 CAATTTTCATAGTTTCCCATTCAATCTTTTCTAAAAATGAAATTGTTGAAAAGTAAGAAAACGAT
66 CAATTTCCATAGTTTCCCATTCAATCTTTTC-AAAAATGAAATTGTTGAAAAGTAAGAAAACGAT
2363592 TTCCATAG-TATCTTACTTAGTAAACTATTTCC
130 TTCCATAGTTATCTTACTTAGTAAACTATTTCC
2363624 CACATCCATA
Statistics
Matches: 148, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
165 110 0.74
166 38 0.26
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37
Consensus pattern (165 bp):
AGCATTATCTTGAGATTGGGGCATGTTACCCAATAAACATGATATTTTGAAAAATAATGAGAAAA
CAATTTCCATAGTTTCCCATTCAATCTTTTCAAAAATGAAATTGTTGAAAAGTAAGAAAACGATT
TCCATAGTTATCTTACTTAGTAAACTATTTCCAAC
Found at i:2363807 original size:73 final size:73
Alignment explanation
Indices: 2363658--2364086 Score: 752
Period size: 73 Copynumber: 5.9 Consensus size: 73
2363648 GGATGTTTTC
*
2363658 ACAGAAATTTATCTCACTTGAGATTGTTTTTCTTAAAAC-AAATTTGTCTCGCTTGAGACAGTTT
1 ACAGAACTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTTT
2363722 CACTCGAA
66 CACTCGAA
2363730 ACAGAACTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTTT
1 ACAGAACTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTTT
2363795 CACTCGAA
66 CACTCGAA
*
2363803 ACAGAACTTTTTCTCACTTGAGATTGTTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTTT
1 ACAGAACTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTTT
2363868 CACTCGAA
66 CACTCGAA
*
2363876 ACAGAACTTTATCTCACTTGAGATTATTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTTT
1 ACAGAACTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTTT
*
2363941 CACTTGAA
66 CACTCGAA
* *
2363949 ATAGAACTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAATTTTGTCTCGCTTGAGACAGTTT
1 ACAGAACTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTTT
*
2364014 CACTTGAA
66 CACTCGAA
* * *
2364022 ACAAAAATTTATCTCACTTGAGATTGTTTTTCTTAAAACAAAGATTTGTCTCGCTTAAGACAGTT
1 ACAGAACTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAA-ATTTGTCTCGCTTGAGACAGTT
2364087 ATTTCGAGTT
Statistics
Matches: 342, Mismatches: 13, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
72 38 0.11
73 284 0.83
74 20 0.06
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (73 bp):
ACAGAACTTTATCTCACTTGAGATTGTTTTTCTTAAAACAAAATTTGTCTCGCTTGAGACAGTTT
CACTCGAA
Found at i:2364386 original size:76 final size:76
Alignment explanation
Indices: 2364256--2364440 Score: 280
Period size: 76 Copynumber: 2.4 Consensus size: 76
2364246 TATTTCCCAT
* *
2364256 ATCTGTAAGTCTTACAGTGCATGATGTTTCCAAAAAGCCTTCAGGAGCTCTTTGATGTTTTCAAA
1 ATCTGTAAGTCCTACAGTGCATGATGTTTTCAAAAAGCCTTCAGGAGCTCTTTGATGTTTTCAAA
2364321 ACCTCAAGGCC
66 ACCTCAAGGCC
* * *
2364332 ATCTGTAAGTCCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGATCTTTTTGATGTTTTCAAA
1 ATCTGTAAGTCCTACAGTGCATGATGTTTTCAAAAAGCCTTCAGGAGCTCTTTGATGTTTTCAAA
* * *
2364397 GCCTTAGGGCC
66 ACCTCAAGGCC
* *
2364408 ATCTGTAAGCCCTTCAGTGCATGATGTTTTCAA
1 ATCTGTAAGTCCTACAGTGCATGATGTTTTCAA
2364441 CATTTCCATC
Statistics
Matches: 99, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
76 99 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (76 bp):
ATCTGTAAGTCCTACAGTGCATGATGTTTTCAAAAAGCCTTCAGGAGCTCTTTGATGTTTTCAAA
ACCTCAAGGCC
Found at i:2364570 original size:3 final size:3
Alignment explanation
Indices: 2364562--2364624 Score: 63
Period size: 3 Copynumber: 20.0 Consensus size: 3
2364552 TTTTTTCATT
** *
2364562 TTA TTA TTA TTA TTA AAA TTA TCA TTA TTA TTA TGTA TTA TATA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA T-TA T-TA
*
2364610 TTA TTA TTA TAA TTA
1 TTA TTA TTA TTA TTA
2364625 CAAGCCCAAC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
3 40 0.80
4 10 0.20
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:2368031 original size:20 final size:20
Alignment explanation
Indices: 2367997--2368034 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2367987 TCGTAAATGT
2367997 AAATATAAAATAATTACAAC
1 AAATATAAAATAATTACAAC
2368017 AAATAATAAAA-AATTACA
1 AAAT-ATAAAATAATTACA
2368035 TTTGTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (20 bp):
AAATATAAAATAATTACAAC
Found at i:2368215 original size:29 final size:29
Alignment explanation
Indices: 2368183--2368289 Score: 92
Period size: 29 Copynumber: 3.7 Consensus size: 29
2368173 TAAAAATAAA
2368183 AGAAACTTAAAGGACTAAATTGCAAAAAT
1 AGAAACTTAAAGGACTAAATTGCAAAAAT
* * * * *
2368212 AGAAAGTTAAAAGACCAAAAT-AACAAAAT
1 AGAAACTTAAAGGACTAAATTGCA-AAAAT
* * *
2368241 AGAAACTTAAAAGG-CTAAAATAGCTAAAAC
1 AGAAACTT-AAAGGACT-AAATTGCAAAAAT
*
2368271 AGAAAGTTAAAGGACTAAA
1 AGAAACTTAAAGGACTAAA
2368290 CTAAAAATAT
Statistics
Matches: 59, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
28 1 0.02
29 38 0.64
30 20 0.34
ACGTcount: A:0.59, C:0.10, G:0.14, T:0.17
Consensus pattern (29 bp):
AGAAACTTAAAGGACTAAATTGCAAAAAT
Found at i:2368275 original size:59 final size:59
Alignment explanation
Indices: 2368165--2368307 Score: 164
Period size: 59 Copynumber: 2.4 Consensus size: 59
2368155 AAATTTAAGG
* *
2368165 GACCAAAATAAAAATAAAAGAAACTTAAAGGACTAAATTGCAAAAATAGAAAGTTAAAA
1 GACCAAAATAAAAATAAAAGAAACTTAAAGGACTAAATAGCAAAAACAGAAAGTTAAAA
* * * *
2368224 GACCAAAATAACAA-AATAGAAACTTAAAAGG-CTAAAATAGCTAAAACAGAAAGTTAAAG
1 GACCAAAATAAAAATAAAAGAAACTT-AAAGGACT-AAATAGCAAAAACAGAAAGTTAAAA
* * *
2368283 GACTAAACTAAAAATATAAAAAAAC
1 GACCAAAATAAAAATA-AAAGAAAC
2368308 CAGAGCCAAG
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
58 12 0.17
59 50 0.72
60 1 0.01
61 6 0.09
ACGTcount: A:0.62, C:0.10, G:0.11, T:0.16
Consensus pattern (59 bp):
GACCAAAATAAAAATAAAAGAAACTTAAAGGACTAAATAGCAAAAACAGAAAGTTAAAA
Found at i:2368281 original size:30 final size:29
Alignment explanation
Indices: 2368207--2368289 Score: 96
Period size: 29 Copynumber: 2.8 Consensus size: 29
2368197 CTAAATTGCA
* *
2368207 AAAATAGAAAGTTAAAAGACCAAAATAAC
1 AAAATAGAAAGTTAAAAGGCTAAAATAAC
* *
2368236 AAAATAGAAACTTAAAAGGCTAAAATAGC
1 AAAATAGAAAGTTAAAAGGCTAAAATAAC
*
2368265 TAAAACAGAAAGTT-AAAGGACTAAA
1 -AAAATAGAAAGTTAAAAGG-CTAAA
2368290 CTAAAAATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
29 30 0.65
30 16 0.35
ACGTcount: A:0.61, C:0.10, G:0.13, T:0.16
Consensus pattern (29 bp):
AAAATAGAAAGTTAAAAGGCTAAAATAAC
Found at i:2369726 original size:10 final size:10
Alignment explanation
Indices: 2369711--2369746 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
2369701 CTCAGATCTT
2369711 GGGTCAGTTC
1 GGGTCAGTTC
*
2369721 GGGTCAGCTC
1 GGGTCAGTTC
2369731 TGGGTCAGTTC
1 -GGGTCAGTTC
2369742 GGGTC
1 GGGTC
2369747 TGGATCGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.08, C:0.22, G:0.42, T:0.28
Consensus pattern (10 bp):
GGGTCAGTTC
Found at i:2369757 original size:21 final size:21
Alignment explanation
Indices: 2369694--2369746 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
2369684 TAAGGTGTCA
2369694 AGTT-GGGCTCAGATCTTGGGTC
1 AGTTCGGG-TCAGATC-TGGGTC
*
2369716 AGTTCGGGTCAGCTCTGGGTC
1 AGTTCGGGTCAGATCTGGGTC
2369737 AGTTCGGGTC
1 AGTTCGGGTC
2369747 TGGATCGGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 16 0.55
22 10 0.34
23 3 0.10
ACGTcount: A:0.11, C:0.21, G:0.38, T:0.30
Consensus pattern (21 bp):
AGTTCGGGTCAGATCTGGGTC
Found at i:2371762 original size:2 final size:2
Alignment explanation
Indices: 2371755--2371803 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
2371745 AGCTTTATTG
2371755 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2371797 TA TA TA T
1 TA TA TA T
2371804 TTGGTAAACA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:2374595 original size:59 final size:59
Alignment explanation
Indices: 2374532--2374665 Score: 155
Period size: 59 Copynumber: 2.3 Consensus size: 59
2374522 AAATTTAAGG
*
2374532 GACCAAAATAAAAATGAAAGAAACTTAAAGGACT-AAATTGCAAAAAAAGAAAGTTAAAA
1 GACCAAAATAAAAAT-AAAGAAACTTAAAGGACTAAAATAGCAAAAAAAGAAAGTTAAAA
* * * * * *
2374591 GACCAAAATAACAAA-ACAGAAACTTAAAGGGCTAAAATAGCTAAAACAGAAATTTAAAG
1 GACCAAAATAA-AAATAAAGAAACTTAAAGGACTAAAATAGCAAAAAAAGAAAGTTAAAA
* *
2374650 GACTAAACTAAAAATA
1 GACCAAAATAAAAATA
2374666 TAAACAAACC
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
58 19 0.30
59 41 0.65
60 3 0.05
ACGTcount: A:0.60, C:0.11, G:0.13, T:0.16
Consensus pattern (59 bp):
GACCAAAATAAAAATAAAGAAACTTAAAGGACTAAAATAGCAAAAAAAGAAAGTTAAAA
Found at i:2374639 original size:30 final size:29
Alignment explanation
Indices: 2374550--2374656 Score: 117
Period size: 29 Copynumber: 3.7 Consensus size: 29
2374540 TAAAAATGAA
* *
2374550 AGAAACTTAAAGGACT-AAATTGCAAAAAA
1 AGAAACTTAAAGGACTAAAATAGC-AAAAC
* * * *
2374579 AGAAAGTTAAAAGACCAAAATAACAAAAC
1 AGAAACTTAAAGGACTAAAATAGCAAAAC
*
2374608 AGAAACTTAAAGGGCTAAAATAGCTAAAAC
1 AGAAACTTAAAGGACTAAAATAGC-AAAAC
*
2374638 AGAAATTTAAAGGACTAAA
1 AGAAACTTAAAGGACTAAA
2374657 CTAAAAATAT
Statistics
Matches: 63, Mismatches: 13, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
29 36 0.57
30 27 0.43
ACGTcount: A:0.59, C:0.11, G:0.14, T:0.16
Consensus pattern (29 bp):
AGAAACTTAAAGGACTAAAATAGCAAAAC
Found at i:2376289 original size:21 final size:22
Alignment explanation
Indices: 2376255--2376319 Score: 66
Period size: 21 Copynumber: 3.0 Consensus size: 22
2376245 GTGTAAATTG
*
2376255 TAAATAAAATATAA-AATAATAA
1 TAAATAAAATAAAATAATAA-AA
2376277 T-AATAATTAATAAAAT-ATAAAA
1 TAAATAA--AATAAAATAATAAAA
2376299 TAAATAAAATAAAATAA-AAAA
1 TAAATAAAATAAAATAATAAAA
2376320 GACCCGGACA
Statistics
Matches: 37, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
21 17 0.46
22 5 0.14
23 15 0.41
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (22 bp):
TAAATAAAATAAAATAATAAAA
Found at i:2376289 original size:28 final size:26
Alignment explanation
Indices: 2376256--2376317 Score: 90
Period size: 28 Copynumber: 2.3 Consensus size: 26
2376246 TGTAAATTGT
2376256 AAATAAAATATAAAAT-AATAATAATA
1 AAATAAAATATAAAATAAATAA-AATA
2376282 ATTAATAAAATATAAAATAAATAAAATA
1 A--AATAAAATATAAAATAAATAAAATA
2376310 AAATAAAA
1 AAATAAAA
2376318 AAGACCCGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
26 8 0.24
28 20 0.61
29 5 0.15
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (26 bp):
AAATAAAATATAAAATAAATAAAATA
Found at i:2376304 original size:16 final size:16
Alignment explanation
Indices: 2376255--2376309 Score: 64
Period size: 16 Copynumber: 3.7 Consensus size: 16
2376245 GTGTAAATTG
2376255 TAAATAAAATATAAAA
1 TAAATAAAATATAAAA
*
2376271 T-AAT--AATA-ATAA
1 TAAATAAAATATAAAA
*
2376283 TTAATAAAATATAAAA
1 TAAATAAAATATAAAA
2376299 TAAATAAAATA
1 TAAATAAAATA
2376310 AAATAAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
12 4 0.12
13 7 0.22
15 7 0.22
16 14 0.44
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (16 bp):
TAAATAAAATATAAAA
Found at i:2376630 original size:9 final size:9
Alignment explanation
Indices: 2376596--2376638 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
2376586 TCGGGATTCA
*
2376596 GAGGAGGAG
1 GAGGAGAAG
*
2376605 GAGGAGGAG
1 GAGGAGAAG
*
2376614 GAGAAGAAG
1 GAGGAGAAG
2376623 GAGGAGAAG
1 GAGGAGAAG
*
2376632 GGGGAGA
1 GAGGAGA
2376639 GTTAAACGGG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (9 bp):
GAGGAGAAG
Found at i:2376637 original size:12 final size:12
Alignment explanation
Indices: 2376596--2376637 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
2376586 TCGGGATTCA
*
2376596 GAGGAGGAGGAG
1 GAGGAGGAGAAG
2376608 GAGGAGGAGAAG
1 GAGGAGGAGAAG
*
2376620 AAGGAGGAGAAG
1 GAGGAGGAGAAG
*
2376632 GGGGAG
1 GAGGAG
2376638 AGTTAAACGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.62, T:0.00
Consensus pattern (12 bp):
GAGGAGGAGAAG
Found at i:2377316 original size:48 final size:49
Alignment explanation
Indices: 2377260--2377355 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 49
2377250 ATTAAAGACG
2377260 CATCTTGAACATGATCAAATCATGTCCTAAAC-TTATCAATTGTTGTCA
1 CATCTTGAACATGATCAAATCATGTCCTAAACTTTATCAATTGTTGTCA
2377308 CATCTTGAACATGATCAAATCATGTCCTAAACTTTATCAATTGTTGTC
1 CATCTTGAACATGATCAAATCATGTCCTAAACTTTATCAATTGTTGTC
2377356 TTTTAAAATA
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
48 32 0.68
49 15 0.32
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.36
Consensus pattern (49 bp):
CATCTTGAACATGATCAAATCATGTCCTAAACTTTATCAATTGTTGTCA
Found at i:2377659 original size:105 final size:105
Alignment explanation
Indices: 2377538--2377744 Score: 342
Period size: 105 Copynumber: 2.0 Consensus size: 105
2377528 ATTTATTTAA
* *
2377538 ATATTTATTAATTGAATGTTTTAAGCTAAGATTAATGCAATTGTATTGTTACCGCCGTTGCTTGG
1 ATATATATTAATTGAATGTTTTAAGCTAAGACTAATGCAATTGTATTGTTACCGCCGTTGCTTGG
* *
2377603 GTCATGCTTTTATAAATATGTGTCTTTAATATATATATAT
66 GTAATGCTTTTATAAATATGTGTCTTTAACATATATATAT
* *
2377643 ATATATATTAATTGAATGTTTTAAGCTAAGACTGATGCAATTGTGTTGTTACCGCCGTTGCTTGG
1 ATATATATTAATTGAATGTTTTAAGCTAAGACTAATGCAATTGTATTGTTACCGCCGTTGCTTGG
* *
2377708 TTAATGCTTTTATAAATATGTTTCTTTAACATATATA
66 GTAATGCTTTTATAAATATGTGTCTTTAACATATATA
2377745 GTACATCTTC
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
105 94 1.00
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.45
Consensus pattern (105 bp):
ATATATATTAATTGAATGTTTTAAGCTAAGACTAATGCAATTGTATTGTTACCGCCGTTGCTTGG
GTAATGCTTTTATAAATATGTGTCTTTAACATATATATAT
Found at i:2380161 original size:16 final size:17
Alignment explanation
Indices: 2380140--2380175 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
2380130 TTAATGTTAT
2380140 TTTAAACTTAAATT-AA
1 TTTAAACTTAAATTGAA
*
2380156 TTTAAATTTAAATTGAA
1 TTTAAACTTAAATTGAA
2380173 TTT
1 TTT
2380176 TTCTCAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (17 bp):
TTTAAACTTAAATTGAA
Found at i:2380721 original size:16 final size:17
Alignment explanation
Indices: 2380696--2380731 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
2380686 GATTTGAGAA
2380696 AAATTCAATTTAAATTT
1 AAATTCAATTTAAATTT
*
2380713 AAATT-AATTTAAGTTT
1 AAATTCAATTTAAATTT
2380729 AAA
1 AAA
2380732 ATAACATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.44
Consensus pattern (17 bp):
AAATTCAATTTAAATTT
Found at i:2382354 original size:19 final size:20
Alignment explanation
Indices: 2382310--2382354 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
2382300 ATTTATTTTT
2382310 AATAAATTTTTATCTATGAA
1 AATAAATTTTTATCTATGAA
*
2382330 ATTAAATTTTTAT-T-TGCAA
1 AATAAATTTTTATCTATG-AA
2382349 AATAAA
1 AATAAA
2382355 ATATTAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 2 0.09
19 8 0.36
20 12 0.55
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.44
Consensus pattern (20 bp):
AATAAATTTTTATCTATGAA
Found at i:2382383 original size:14 final size:13
Alignment explanation
Indices: 2382355--2382392 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
2382345 GCAAAATAAA
2382355 ATATTAAAATAGT
1 ATATTAAAATAGT
*
2382368 ATATTAATATTAGT
1 ATATTAA-AATAGT
2382382 ATATTAAAATA
1 ATATTAAAATA
2382393 TAATTGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (13 bp):
ATATTAAAATAGT
Found at i:2383739 original size:23 final size:23
Alignment explanation
Indices: 2383686--2383737 Score: 81
Period size: 22 Copynumber: 2.3 Consensus size: 23
2383676 TAAGTTAACA
*
2383686 ATTGGTTGA-TGGTGATATTTGG
1 ATTGGTTTATTGGTGATATTTGG
2383708 ATTGGTTTATTGGTGATA-TTGG
1 ATTGGTTTATTGGTGATATTTGG
2383730 ATTGGTTT
1 ATTGGTTT
2383738 TAGATGTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
22 20 0.71
23 8 0.29
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (23 bp):
ATTGGTTTATTGGTGATATTTGG
Found at i:2383748 original size:22 final size:22
Alignment explanation
Indices: 2383698--2383748 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
2383688 TGGTTGATGG
* *
2383698 TGATATTTGGATTGGTTTATTGG
1 TGATA-TTGGATTGGTTTATAGA
2383721 TGATATTGGATTGGTTT-TAGA
1 TGATATTGGATTGGTTTATAGA
2383742 TGTATAT
1 TG-ATAT
2383749 GAGATCATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 4 0.16
22 16 0.64
23 5 0.20
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.51
Consensus pattern (22 bp):
TGATATTGGATTGGTTTATAGA
Found at i:2383909 original size:18 final size:18
Alignment explanation
Indices: 2383886--2383920 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
2383876 CAAATCGGGT
*
2383886 TGACCCGAACCATTGACA
1 TGACCCAAACCATTGACA
*
2383904 TGACCCAAACCGTTGAC
1 TGACCCAAACCATTGAC
2383921 CGGCCAGACC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.34, G:0.17, T:0.17
Consensus pattern (18 bp):
TGACCCAAACCATTGACA
Found at i:2386678 original size:19 final size:20
Alignment explanation
Indices: 2386656--2386693 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
2386646 CATAAGTATA
2386656 TACATGCAT-CATATATATG
1 TACATGCATGCATATATATG
2386675 TACATGCATGCATATATAT
1 TACATGCATGCATATATAT
2386694 ATACTTATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (20 bp):
TACATGCATGCATATATATG
Found at i:2386691 original size:2 final size:2
Alignment explanation
Indices: 2386686--2386942 Score: 199
Period size: 2 Copynumber: 132.5 Consensus size: 2
2386676 ACATGCATGC
* *
2386686 AT AT AT AT AT ACT -T AT GT AT AT ACT -T AT ACT AT AT A- AT TT
1 AT AT AT AT AT A-T AT AT AT AT AT A-T AT AT A-T AT AT AT AT AT
* *
2386726 AT AT A- AT -T GT AT ACT -T AT AT AT AT A- AT -T GT AT A- AT AT
1 AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT
*
2386763 AT AT AT ACT -T AT AT AT -T AT AT AT AT -T CT -T AT AT -T AT AT
1 AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
2386801 AT AT ACT -T AT AT AT AT AT AT AT TT AT ACT TT AT AT AT AT AT AT
1 AT AT A-T AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT
*
2386844 AT AT AT AT ACT TT AT AT AT AT AT AT AT AT AT AT AT ACT AT AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
* *
2386888 AT AT AT AT AT AT AT AT AT ACT -T AT AT -T AC AT AT AT AT AT GT
1 AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT
*
2386929 AT AC AT AT AT -T AT A
1 AT AT AT AT AT AT AT A
2386943 AGTATAATGT
Statistics
Matches: 209, Mismatches: 18, Indels: 56
0.74 0.06 0.20
Matches are distributed among these distances:
1 18 0.09
2 179 0.86
3 12 0.06
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.51
Consensus pattern (2 bp):
AT
Found at i:2386721 original size:25 final size:22
Alignment explanation
Indices: 2386687--2386942 Score: 168
Period size: 21 Copynumber: 11.7 Consensus size: 22
2386677 CATGCATGCA
*
2386687 TATATATATACTTATGTATATACT
1 TATATATATA-TTATATATATA-T
2386711 TATACTATATAATT-TATATA-AT
1 TATA-TATAT-ATTATATATATAT
*
2386733 TGTATACT-TA-TATATATA-AT
1 TATATA-TATATTATATATATAT
* *
2386753 TGTATA-ATA-TATATATA-CT
1 TATATATATATTATATATATAT
*
2386772 TATATAT-TATATATATTCTTATAT
1 TATATATATAT-TATA-T-ATATAT
2386796 TATATATATACTTATATATATA-
1 TATATATATA-TTATATATATAT
*
2386818 TATATTTATACTTTATATATATAT
1 TATATATATA--TTATATATATAT
2386842 ATATATATATACTT-TATATATA-
1 -TATATATATA-TTATATATATAT
2386864 TATATATATA-TATATACTATA-
1 TATATATATATTATATA-TATAT
2386885 TATATATATATATATATATATACT
1 TATATATATAT-TATATATATA-T
* *
2386909 TATAT-TACA-TATATATAT-G
1 TATATATATATTATATATATAT
*
2386928 TATACATATATTATA
1 TATATATATATTATA
2386943 AGTATAATGT
Statistics
Matches: 193, Mismatches: 15, Indels: 51
0.75 0.06 0.20
Matches are distributed among these distances:
19 24 0.12
20 22 0.11
21 44 0.23
22 19 0.10
23 35 0.18
24 25 0.13
25 22 0.11
26 2 0.01
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.51
Consensus pattern (22 bp):
TATATATATATTATATATATAT
Found at i:2386948 original size:25 final size:26
Alignment explanation
Indices: 2386686--2386942 Score: 232
Period size: 27 Copynumber: 9.9 Consensus size: 26
2386676 ACATGCATGC
*
2386686 ATATATATATACTTATGTATATACT-T
1 ATATATATATACTTATATATATA-TAT
* *
2386712 ATACTATATA-ATTTATATA-ATTGTAT
1 ATA-TATATATACTTATATATA-TATAT
* *
2386738 ACTTATATATATAATTGTATA-ATATAT
1 A--TATATATATACTTATATATATATAT
*
2386765 ATATACTTATATA-TTATATATAT-TCT
1 ATATA--TATATACTTATATATATATAT
2386791 -TATAT-TATA-TATATACTTATATATAT
1 ATATATATATACT-TATA--TATATATAT
*
2386817 ATATATTTATACTT-TATATATATAT
1 ATATATATATACTTATATATATATAT
2386842 ATATATATATACTTTATATATATATAT
1 ATATATATATAC-TTATATATATATAT
2386869 ATATATATATACTATATATATATATAT
1 ATATATATATACT-TATATATATATAT
*
2386896 ATATATATATACTTATAT-TACATAT
1 ATATATATATACTTATATATATATAT
* *
2386921 ATATATGTATACATATAT-TATA
1 ATATATATATACTTATATATATA
2386943 AGTATAATGT
Statistics
Matches: 198, Mismatches: 14, Indels: 39
0.79 0.06 0.16
Matches are distributed among these distances:
22 5 0.03
23 5 0.03
25 60 0.30
26 31 0.16
27 81 0.41
28 15 0.08
29 1 0.01
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.51
Consensus pattern (26 bp):
ATATATATATACTTATATATATATAT
Found at i:2389782 original size:5 final size:5
Alignment explanation
Indices: 2388255--2389770 Score: 2893
Period size: 5 Copynumber: 305.8 Consensus size: 5
2388245 TTTTCTAAAA
2388255 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388305 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388355 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT AC-AT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388404 AC-AT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388453 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388503 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388553 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388603 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388653 ACAAT AC-A- ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388701 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388751 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388801 ACAAT ACAAT ACAAT ACAAAT ACAAT ACAAT ACAAT AC-A- ACAAT ACAAT
1 ACAAT ACAAT ACAAT AC-AAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388850 ACAAT ACAAT ACAAT AC-AT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388899 ACAAT AC-AT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388948 AC-A- ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2388996 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389046 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT AC-AT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389095 ACAAT ACAAT AC-AT ACAAT ACAAT ACAAT ACAAT AC-A- ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389142 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389192 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389242 ACAAT ACAAT ACAAT ACACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT --ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389294 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389344 AC-A- ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389392 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389442 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389492 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389542 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389592 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389642 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389692 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT ACAAT
2389742 ACAAT ACAAT ACAAT ACAAT ACAAT ACAA
1 ACAAT ACAAT ACAAT ACAAT ACAAT ACAA
2389771 AATATCCAAT
Statistics
Matches: 1492, Mismatches: 0, Indels: 38
0.98 0.00 0.02
Matches are distributed among these distances:
3 10 0.01
4 34 0.02
5 1438 0.96
6 5 0.00
7 5 0.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
ACAAT
Found at i:2398631 original size:18 final size:19
Alignment explanation
Indices: 2398589--2398628 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
2398579 AATATTGAAT
*
2398589 TTTAAGAATT-TATATTTGA
1 TTTAA-AATTATATATTCGA
2398608 TTTAAAATTATATATTCGA
1 TTTAAAATTATATATTCGA
2398627 TT
1 TT
2398629 AAATTATTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (19 bp):
TTTAAAATTATATATTCGA
Found at i:2401915 original size:346 final size:347
Alignment explanation
Indices: 2401256--2401952 Score: 1371
Period size: 346 Copynumber: 2.0 Consensus size: 347
2401246 ACTAATGAAT
2401256 ATGGACCCAAAAGAATTTGGGTACCAAAAATTAGAAATTAATCTATGTTTGTAGGAAAAGGAGCA
1 ATGGACCCAAAAGAATTTGGGTACCAAAAATTAGAAATTAATCTATGTTTGTAGGAAAAGGAGCA
2401321 TTGCTACAAGGCACAAAATACAAGTTCAAATTCATGGTTCCTTGATAGTGGATGCTCAAGACACA
66 TTGCTACAAGGCACAAAATACAAGTTCAAATTCATGGTTCCTTGATAGTGGATGCTCAAGACACA
2401386 TGATCGGAGACAAGAGTCAGATTATTGAGCTTAACGACAAAAATGAAGGAGTGGTATCCTTTGGT
131 TGATCGGAGACAAGAGTCAGATTATTGAGCTTAACGACAAAAATGAAGGAGTGGTATCCTTTGGT
2401451 GACAACTCAAAAGATTACGTTGAAGGTATAGGTACTACAGGTAATACCTCTTCCATACAAATAGA
196 GACAACTCAAAAGATTACGTTGAAGGTATAGGTACTACAGGTAATACCTCTTCCATACAAATAGA
2401516 AAAAGTATTCTATGTGAATGGGTTAAAGCATAATCTATTGAGTATTAGTCAATTATGCGATAAAG
261 AAAAGTATTCTATGTGAATGGGTTAAAGCATAATCTATTGAGTATTAGTCAATTATGCGAT-AAG
2401581 GATACATGTCTTATTTAAATTAA
325 GATACATGTCTTATTTAAATTAA
2401604 ATGGACCCAAAAGAA-TTGGGTACC-AAAATTAGAAATTAATCTATGTTTGTAGGAAAAGGAGCA
1 ATGGACCCAAAAGAATTTGGGTACCAAAAATTAGAAATTAATCTATGTTTGTAGGAAAAGGAGCA
2401667 TTGCTACAAGGCACAAAATACAAGTTCAAATTCATGGTTCCTTGATAGTGGATGCTCAAGACACA
66 TTGCTACAAGGCACAAAATACAAGTTCAAATTCATGGTTCCTTGATAGTGGATGCTCAAGACACA
2401732 TGATCGGAGACAAGAGTCAGATTATTGAGCTTAACGACAAAAATGAAGGAGTGGTATCCTTTGGT
131 TGATCGGAGACAAGAGTCAGATTATTGAGCTTAACGACAAAAATGAAGGAGTGGTATCCTTTGGT
2401797 GACAACTCAAAAGATTACGTTGAAGGTATAGGTACTACAGGTAATACCTCTTCCATACAAATAGA
196 GACAACTCAAAAGATTACGTTGAAGGTATAGGTACTACAGGTAATACCTCTTCCATACAAATAGA
2401862 AAAAGTATTCTATGTGAATGGGTTAAAGCATAATCTATTGAGTATTAGTCAATTATGCGATAAGG
261 AAAAGTATTCTATGTGAATGGGTTAAAGCATAATCTATTGAGTATTAGTCAATTATGCGATAAGG
2401927 ATACATGTCTTATTTAAATTAA
326 ATACATGTCTTATTTAAATTAA
2401949 ATGG
1 ATGG
2401953 TTGTTGGTGA
Statistics
Matches: 349, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
345 30 0.09
346 295 0.85
347 9 0.03
348 15 0.04
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.28
Consensus pattern (347 bp):
ATGGACCCAAAAGAATTTGGGTACCAAAAATTAGAAATTAATCTATGTTTGTAGGAAAAGGAGCA
TTGCTACAAGGCACAAAATACAAGTTCAAATTCATGGTTCCTTGATAGTGGATGCTCAAGACACA
TGATCGGAGACAAGAGTCAGATTATTGAGCTTAACGACAAAAATGAAGGAGTGGTATCCTTTGGT
GACAACTCAAAAGATTACGTTGAAGGTATAGGTACTACAGGTAATACCTCTTCCATACAAATAGA
AAAAGTATTCTATGTGAATGGGTTAAAGCATAATCTATTGAGTATTAGTCAATTATGCGATAAGG
ATACATGTCTTATTTAAATTAA
Found at i:2402060 original size:161 final size:164
Alignment explanation
Indices: 2401792--2402119 Score: 617
Period size: 161 Copynumber: 2.0 Consensus size: 164
2401782 GTGGTATCCT
2401792 TTGGTGACAACTCAAAAGATTACGTTGAAGGTATAGGTACTACAGGTAATACCTCTTCCATACAA
1 TTGGTGACAACTCAAAAG--TACGTTGAAGGTATAGGTACTACAGGTAATACCTCTTCCATACAA
2401857 ATAGAAAAAGTATTCTATGTGAATGGGTTAAAGCATAATCTATTGAGTATTAGTCAATTATGCGA
64 ATAGAAAAAGTATTCTATGTGAATGGGTTAAAGCATAATCTATTGAGTATTAGTCAATTATGCGA
2401922 T-AAGGATAC-ATGTCTTATTTAAATTAAATGGTTG
129 TAAAGGATACAATGTCTTATTTAAATTAAATGGTTG
2401956 TTGGTGACAACTCAAAAG-ACGTTGAAGGTATAGGTACTACAGGTAATACCTCTTCCATACAAAT
1 TTGGTGACAACTCAAAAGTACGTTGAAGGTATAGGTACTACAGGTAATACCTCTTCCATACAAAT
2402020 AGAAAAAGTATTCTATGTGAATGGGTTAAAGCATAATCTATTGAGTATTAGTCAATTATGCGATA
66 AGAAAAAGTATTCTATGTGAATGGGTTAAAGCATAATCTATTGAGTATTAGTCAATTATGCGATA
2402085 AAGGATACAATGTCTTATTTAAATTAAATGGTTG
131 AAGGATACAATGTCTTATTTAAATTAAATGGTTG
2402119 T
1 T
2402120 AAAATTGTTG
Statistics
Matches: 162, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
161 110 0.68
162 8 0.05
163 26 0.16
164 18 0.11
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (164 bp):
TTGGTGACAACTCAAAAGTACGTTGAAGGTATAGGTACTACAGGTAATACCTCTTCCATACAAAT
AGAAAAAGTATTCTATGTGAATGGGTTAAAGCATAATCTATTGAGTATTAGTCAATTATGCGATA
AAGGATACAATGTCTTATTTAAATTAAATGGTTG
Found at i:2406396 original size:18 final size:19
Alignment explanation
Indices: 2406354--2406393 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
2406344 AATATTGAAT
*
2406354 TTTAAGAATT-TATATTTGA
1 TTTAA-AATTATATATTCGA
2406373 TTTAAAATTATATATTCGA
1 TTTAAAATTATATATTCGA
2406392 TT
1 TT
2406394 AAATTATTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (19 bp):
TTTAAAATTATATATTCGA
Found at i:2406579 original size:20 final size:20
Alignment explanation
Indices: 2406554--2406607 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
2406544 TACAAAAGGG
2406554 ATGTACCGATACACTCCTGT
1 ATGTACCGATACACTCCTGT
2406574 ATGTACCGATACACTCCTGT
1 ATGTACCGATACACTCCTGT
*
2406594 ATGTACTGATACAC
1 ATGTACCGATACAC
2406608 CCCATATTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.30
Consensus pattern (20 bp):
ATGTACCGATACACTCCTGT
Found at i:2406727 original size:21 final size:21
Alignment explanation
Indices: 2406701--2406759 Score: 109
Period size: 21 Copynumber: 2.8 Consensus size: 21
2406691 TTTTACACTG
*
2406701 AGTGTACCGGTACACCTTGAT
1 AGTGTACCGATACACCTTGAT
2406722 AGTGTACCGATACACCTTGAT
1 AGTGTACCGATACACCTTGAT
2406743 AGTGTACCGATACACCT
1 AGTGTACCGATACACCT
2406760 ACGCTCCCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (21 bp):
AGTGTACCGATACACCTTGAT
Found at i:2408729 original size:22 final size:22
Alignment explanation
Indices: 2408702--2408743 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
2408692 CTATTAAAAA
*
2408702 CATGTCTTGAACTTAATTAGAT
1 CATGTCTTAAACTTAATTAGAT
*
2408724 CATGTCTTAAACTTTATTAG
1 CATGTCTTAAACTTAATTAG
2408744 TTGTTGTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (22 bp):
CATGTCTTAAACTTAATTAGAT
Found at i:2413796 original size:31 final size:31
Alignment explanation
Indices: 2413743--2413802 Score: 88
Period size: 30 Copynumber: 1.9 Consensus size: 31
2413733 AGGTGCAACG
2413743 TAAAACTTTTAAAAATTTGAAAG-TTTAAAT
1 TAAAACTTTTAAAAATTTGAAAGATTTAAAT
2413773 TAAAA-TTATTAAAAATTTTGAAAGATTTAA
1 TAAAACTT-TTAAAAA-TTTGAAAGATTTAA
2413803 TTTATATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 2 0.07
30 12 0.44
31 8 0.30
32 5 0.19
ACGTcount: A:0.52, C:0.02, G:0.07, T:0.40
Consensus pattern (31 bp):
TAAAACTTTTAAAAATTTGAAAGATTTAAAT
Found at i:2415706 original size:12 final size:11
Alignment explanation
Indices: 2415682--2415730 Score: 55
Period size: 12 Copynumber: 4.4 Consensus size: 11
2415672 TTCAAAGAGG
2415682 TTTTAT-TTAA
1 TTTTATATTAA
2415692 TTTTATATTATA
1 TTTTATATTA-A
* *
2415704 TTTGATTTTAA
1 TTTTATATTAA
2415715 TTTTAATATTAA
1 TTTT-ATATTAA
2415727 TTTT
1 TTTT
2415731 TTAAATAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 6 0.19
11 7 0.22
12 19 0.59
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (11 bp):
TTTTATATTAA
Found at i:2415746 original size:24 final size:25
Alignment explanation
Indices: 2415712--2415780 Score: 79
Period size: 24 Copynumber: 2.8 Consensus size: 25
2415702 TATTTGATTT
*
2415712 TAATTTTAATATTAATTTTTTAA-A
1 TAATTATAATATTAATTTTTTAATA
*
2415736 TAAATTA-AATATTAATATTTTAATA
1 T-AATTATAATATTAATTTTTTAATA
*
2415761 TTATTATAGATATTAATTTT
1 TAATTATA-ATATTAATTTT
2415781 AATATTAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
24 20 0.54
25 7 0.19
26 10 0.27
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (25 bp):
TAATTATAATATTAATTTTTTAATA
Found at i:2415782 original size:62 final size:65
Alignment explanation
Indices: 2415691--2415851 Score: 255
Period size: 62 Copynumber: 2.6 Consensus size: 65
2415681 GTTTTATTTA
2415691 ATTTT-ATATTATATT-T-GAT-TTTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
1 ATTTTAATATTATATTATAGATATTTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
2415752 ATTTTAATA-T-TATTATAGATA-TTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
1 ATTTTAATATTATATTATAGATATTTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
*
2415814 TTTTTAATATTATATTATAGATATTTAATTTTATATAT
1 ATTTTAATATTATATTATAGATATTTAATTTTA-ATAT
2415852 AAAATTATTT
Statistics
Matches: 91, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
60 4 0.04
61 7 0.08
62 55 0.60
63 1 0.01
64 11 0.12
65 9 0.10
66 4 0.04
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (65 bp):
ATTTTAATATTATATTATAGATATTTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAAT
Found at i:2415785 original size:38 final size:37
Alignment explanation
Indices: 2415743--2415838 Score: 99
Period size: 38 Copynumber: 2.5 Consensus size: 37
2415733 AAATAAATTA
2415743 AATATTAATATTTTAATATTATTATAGATATTAA-TTTT
1 AATATTAATATTTTAATATTATTA-A-ATATTAATTTTT
* *
2415781 AATATTAATTTTTTAA-ATAAATTAAATATTAATTTTTT
1 AATATTAATATTTTAATAT-TATTAAATATTAA-TTTTT
*
2415819 AATATT-ATATTATAGATATT
1 AATATTAATATTTTA-ATATT
2415839 TAATTTTATA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
36 7 0.15
37 9 0.19
38 30 0.62
39 2 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (37 bp):
AATATTAATATTTTAATATTATTAAATATTAATTTTT
Found at i:2415858 original size:28 final size:25
Alignment explanation
Indices: 2415770--2415859 Score: 83
Period size: 24 Copynumber: 3.4 Consensus size: 25
2415760 ATTATTATAG
* *
2415770 ATATTAATTTTAATATTAATTTTTT
1 ATATAAATTATAATATTAATTTTTT
*
2415795 AAATAAATTA-AATATTAATTTTTT
1 ATATAAATTATAATATTAATTTTTT
* *
2415819 AATATTATATTATAGATATTTAATTTTAT
1 -ATA-TAAATTATA-ATA-TTAATTTTTT
2415848 ATATAAAATTAT
1 ATAT-AAATTAT
2415860 TTTATATATT
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
24 14 0.27
25 9 0.17
26 6 0.12
27 2 0.04
28 12 0.23
29 9 0.17
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (25 bp):
ATATAAATTATAATATTAATTTTTT
Found at i:2415873 original size:62 final size:60
Alignment explanation
Indices: 2415711--2415927 Score: 197
Period size: 62 Copynumber: 3.4 Consensus size: 60
2415701 ATATTTGATT
* *
2415711 TTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATATTTTAATATTATTATAGATA
1 TTAATTTTAATATAAATTTTTT-AAT-AATTAAATATTAATTTTTTAATATTATTATAGATA
*
2415773 TTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATTTTTTAATATTATATTATAGATA
1 TTAATTTTAATATAAATTTTTT-AAT-AATTAAATATTAATTTTTTAATA-T-TATTATAGATA
* * *
2415837 TTTAATTTTATATATAAAATTATTTTATATATTATTAAATTTTATATTTATTTTA-ATTATT-TT
1 -TTAATTTTA-ATAT-AAATT-TTTTA-ATA--ATTAAATATTA-ATTT-TTTAATATTATTATA
2415900 GAT-
57 GATA
*
2415903 TTAAGTTTAAATATAATATTTTTTA
1 TTAA-TTTTAATATAA-ATTTTTTA
2415928 GATTTGTTAT
Statistics
Matches: 136, Mismatches: 6, Indels: 24
0.82 0.04 0.14
Matches are distributed among these distances:
62 49 0.36
63 1 0.01
64 18 0.13
65 20 0.15
66 8 0.06
67 10 0.07
68 10 0.07
69 11 0.08
70 5 0.04
71 4 0.03
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (60 bp):
TTAATTTTAATATAAATTTTTTAATAATTAAATATTAATTTTTTAATATTATTATAGATA
Found at i:2416161 original size:21 final size:22
Alignment explanation
Indices: 2416137--2416186 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
2416127 AATATTTTCT
*
2416137 AAAAATAT-CATATA-ATTATAA
1 AAAAATATGAATATATATT-TAA
2416158 AAAAATTATGAATATATATTTAA
1 AAAAA-TATGAATATATATTTAA
2416181 AAAAAT
1 AAAAAT
2416187 TAAAAGTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 5 0.20
22 4 0.16
23 13 0.52
24 3 0.12
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (22 bp):
AAAAATATGAATATATATTTAA
Found at i:2416417 original size:31 final size:31
Alignment explanation
Indices: 2416358--2416418 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
2416348 GTAGTTGTAT
* * **
2416358 AAATTATTTAAATTTTAGTATTGTAAAACTA
1 AAATTATTTAAATATCAGTATTACAAAACTA
2416389 AAATTATTTAAATATCAGTATTACAAAACT
1 AAATTATTTAAATATCAGTATTACAAAACT
2416419 CTTTTACGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.48, C:0.07, G:0.05, T:0.41
Consensus pattern (31 bp):
AAATTATTTAAATATCAGTATTACAAAACTA
Found at i:2418630 original size:20 final size:20
Alignment explanation
Indices: 2418606--2418651 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
2418596 CCAAAGTATT
2418606 GAAACT-TTAATGAAAGTTTC
1 GAAACTCTTAA-GAAAGTTTC
* *
2418626 TAAACTCTTAAGATAGTTTC
1 GAAACTCTTAAGAAAGTTTC
2418646 GAAACT
1 GAAACT
2418652 ATTGGAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (20 bp):
GAAACTCTTAAGAAAGTTTC
Found at i:2418721 original size:20 final size:22
Alignment explanation
Indices: 2418688--2418729 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
2418678 AACTGTCTTG
*
2418688 GAAAGTTTCGAAAC-TCTTGTA
1 GAAAGTTTCAAAACTTCTTGTA
2418709 GAAA-TTTCAAAACTTCTTGTA
1 GAAAGTTTCAAAACTTCTTGTA
2418730 AGAATACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (22 bp):
GAAAGTTTCAAAACTTCTTGTA
Found at i:2422632 original size:55 final size:54
Alignment explanation
Indices: 2422520--2422632 Score: 181
Period size: 54 Copynumber: 2.1 Consensus size: 54
2422510 TAACATTTTG
* *
2422520 TTAGTTTCTTTAAAAATTCATTTAAAAATATCAAGAAACCTCCGAAAATCAGAC
1 TTAGCTTCTTTAAAAATTCATTTAAAAATATCAAGAAACCTCCAAAAATCAGAC
* *
2422574 TTAGCTTCTTTCAAAATTCATTTAAAAATAATCAAGAAACTTCCAAAAATCAGAC
1 TTAGCTTCTTTAAAAATTCATTTAAAAAT-ATCAAGAAACCTCCAAAAATCAGAC
2422629 TTAG
1 TTAG
2422633 TTTTTCTAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
54 27 0.50
55 27 0.50
ACGTcount: A:0.44, C:0.17, G:0.07, T:0.32
Consensus pattern (54 bp):
TTAGCTTCTTTAAAAATTCATTTAAAAATATCAAGAAACCTCCAAAAATCAGAC
Found at i:2428136 original size:28 final size:28
Alignment explanation
Indices: 2428035--2428137 Score: 179
Period size: 28 Copynumber: 3.7 Consensus size: 28
2428025 TGACTAGGGA
*
2428035 AGGTAATGTGTTTCAGGTTAATTTGGGG
1 AGGTAATGTGTTTCAGGCTAATTTGGGG
* *
2428063 AAGTAATGTGTTTCAGGTTAATTTGGGG
1 AGGTAATGTGTTTCAGGCTAATTTGGGG
2428091 AGGTAATGTGTTTCAGGCTAATTTGGGG
1 AGGTAATGTGTTTCAGGCTAATTTGGGG
2428119 AGGTAATGTGTTTCAGGCT
1 AGGTAATGTGTTTCAGGCT
2428138 GACATCTTGT
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 72 1.00
ACGTcount: A:0.22, C:0.06, G:0.34, T:0.38
Consensus pattern (28 bp):
AGGTAATGTGTTTCAGGCTAATTTGGGG
Found at i:2429594 original size:20 final size:21
Alignment explanation
Indices: 2429561--2429600 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
2429551 CGTTCATTTA
* *
2429561 AATGATAAATAAACATAAACG
1 AATGATAAACAAACACAAACG
2429582 AATG-TAAACAAACACAAAC
1 AATGATAAACAAACACAAAC
2429601 AAACGAACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.62, C:0.15, G:0.07, T:0.15
Consensus pattern (21 bp):
AATGATAAACAAACACAAACG
Found at i:2429637 original size:47 final size:46
Alignment explanation
Indices: 2429565--2429658 Score: 125
Period size: 47 Copynumber: 2.0 Consensus size: 46
2429555 CATTTAAATG
* **
2429565 ATAAATAAACATAAACGAATGTAAACAAACACAAACAAACGAACATA
1 ATAAATAAACATAAACAAACATAAACAAACAC-AACAAACGAACATA
* * *
2429612 ATAAATGAACATAAACAAACATAAACAAACACAATAAATGAACATA
1 ATAAATAAACATAAACAAACATAAACAAACACAACAAACGAACATA
2429658 A
1 A
2429659 ATGAATAACA
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
46 13 0.32
47 28 0.68
ACGTcount: A:0.65, C:0.16, G:0.05, T:0.14
Consensus pattern (46 bp):
ATAAATAAACATAAACAAACATAAACAAACACAACAAACGAACATA
Found at i:2429648 original size:33 final size:35
Alignment explanation
Indices: 2429586--2429659 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 35
2429576 TAAACGAATG
2429586 TAAACAAACACAAACAAACGAACATAATAAATGAACA
1 TAAACAAACACAAACAAAC-AACA-AATAAATGAACA
*
2429623 TAAACAAACATAAACAAAC-AC-AATAAATGAACA
1 TAAACAAACACAAACAAACAACAAATAAATGAACA
2429656 TAAA
1 TAAA
2429660 TGAATAACAC
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
33 16 0.44
35 2 0.06
37 18 0.50
ACGTcount: A:0.66, C:0.18, G:0.04, T:0.12
Consensus pattern (35 bp):
TAAACAAACACAAACAAACAACAAATAAATGAACA
Found at i:2429945 original size:10 final size:10
Alignment explanation
Indices: 2429927--2429960 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
2429917 CCCTCTGTTC
2429927 GAACATAAAT
1 GAACATAAAT
*
2429937 GATCATAAAT
1 GAACATAAAT
2429947 GAACATAAAT
1 GAACATAAAT
2429957 GAAC
1 GAAC
2429961 GAACATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.21
Consensus pattern (10 bp):
GAACATAAAT
Found at i:2435017 original size:2 final size:2
Alignment explanation
Indices: 2435012--2435514 Score: 213
Period size: 2 Copynumber: 255.0 Consensus size: 2
2435002 ACACACACAA
2435012 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
2435054 AT AT AT AT AT AT AGT TT AT A- AT A- AGT AT AT AT AT AT AT AT AA
1 AT AT AT AT AT AT A-T AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
* * *
2435096 ACT AT AT AT AA AT AT AT AGT TT AT TT AT AT CAT -T AT ACT AT AT
1 A-T AT AT AT AT AT AT AT A-T AT AT AT AT AT -AT AT AT A-T AT AT
* ** * *
2435139 AT AA AT -T AT AT AT -T AT GC AT AA ACT AT AT A- AT TT AT -T A-
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
* * *
2435177 AT AT AA AT -T AT AT AA ACT AT AGT AT AT AT TT AT AT -T AT -T AT
1 AT AT AT AT AT AT AT AT A-T AT A-T AT AT AT AT AT AT AT AT AT AT
* * *
2435218 AT ACT AT AT AT AT AT GT AT AA ACT AT AT AGT TT AT -T GAT AT A-
1 AT A-T AT AT AT AT AT AT AT AT A-T AT AT A-T AT AT AT -AT AT AT
* * * * *
2435260 AA AA AT AT AA ACT AT AT AGT TT AT -T A- AT AT AA AT -T AT AT -T
1 AT AT AT AT AT A-T AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
2435300 TT AT AT AT AT AA AGT AT A- AGT AT A- AT AG AT AT AT AA AGT AT
1 AT AT AT AT AT AT A-T AT AT A-T AT AT AT AT AT AT AT AT A-T AT
* * * * * * *
2435341 A- AT -T AT ACT TT A- AA AT AT AT AC CT -T TT AGT TT AT AT TT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT
* * * * *
2435381 -T AT AT AT AT TT AT AGT TT AC ACT TT AT AT AT ACT AT ACT -T TT
1 AT AT AT AT AT AT AT A-T AT AT A-T AT AT AT AT A-T AT A-T AT AT
* * *
2435423 TT AT AT AT -T AT AT -T AA AT AT -T A- AT AT GT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2435460 AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2435501 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
2435515 TGTAGACACT
Statistics
Matches: 376, Mismatches: 70, Indels: 110
0.68 0.13 0.20
Matches are distributed among these distances:
1 31 0.08
2 317 0.84
3 28 0.07
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2435116 original size:47 final size:46
Alignment explanation
Indices: 2435014--2435246 Score: 160
Period size: 47 Copynumber: 4.9 Consensus size: 46
2435004 ACACACAAAT
* * *
2435014 ATATATA-TATATATATATATATATATATATATATATA-TATATATAT
1 ATATATAGTTTATA-ATA-ATATATATATATATATAAACTATATATAA
2435060 ATATATAGTTTATAATAAGTATATATATATATATAAACTATATATAA
1 ATATATAGTTTATAATAA-TATATATATATATATAAACTATATATAA
* * *
2435107 ATATATAGTTTATTTATATCATTATACTATATATAAATTATA-TATTATGCATAA
1 ATATATAGTTTA--TA-AT-AATATA-TATATATATA-TAAACTA-TAT--ATAA
* *
2435161 ACTATATAATTTAT--TAATATA-A-AT-TATATAAACTATAGTATAT
1 A-TATATAGTTTATAATAATATATATATATATATAAACTATA-TATAA
* * * *
2435204 ATTTATATTATTAT-ATACTATATATATATGTATAAACTATATA
1 ATATATAGT-TTATAATAATATATATATATATATAAACTATATA
2435247 GTTTATTGAT
Statistics
Matches: 152, Mismatches: 15, Indels: 40
0.73 0.07 0.19
Matches are distributed among these distances:
42 6 0.04
43 8 0.05
44 11 0.07
45 8 0.05
46 33 0.22
47 38 0.25
49 7 0.05
50 7 0.05
51 12 0.08
52 6 0.04
53 1 0.01
54 5 0.03
55 10 0.07
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (46 bp):
ATATATAGTTTATAATAATATATATATATATATAAACTATATATAA
Found at i:2435308 original size:31 final size:31
Alignment explanation
Indices: 2435234--2435292 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
2435224 TATATATATG
*
2435234 TATAAACTATATAGTTTATTGATATAAAAAA
1 TATAAACTATATAGTTTATTAATATAAAAAA
2435265 TATAAACTATATAGTTTATTAATATAAA
1 TATAAACTATATAGTTTATTAATATAAA
2435293 TTATATTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (31 bp):
TATAAACTATATAGTTTATTAATATAAAAAA
Found at i:2446052 original size:181 final size:181
Alignment explanation
Indices: 2445748--2446109 Score: 724
Period size: 181 Copynumber: 2.0 Consensus size: 181
2445738 AAAATACAAC
2445748 CGTAAACAAGAGATGAACAGAGTTTTTTGTTAGGAACAAGATTTACGGTTTCAACAATTTCAGCA
1 CGTAAACAAGAGATGAACAGAGTTTTTTGTTAGGAACAAGATTTACGGTTTCAACAATTTCAGCA
2445813 AAAATAATCTGAGGTAGGTTGATTTTAATATTGTTTTCGAAAAAAATGTAACCACCAAAGATCTA
66 AAAATAATCTGAGGTAGGTTGATTTTAATATTGTTTTCGAAAAAAATGTAACCACCAAAGATCTA
2445878 AGGCTCTAAGAGTAGAATAACGACCTCTGGATGGTCGAAACCACCAAGGAA
131 AGGCTCTAAGAGTAGAATAACGACCTCTGGATGGTCGAAACCACCAAGGAA
2445929 CGTAAACAAGAGATGAACAGAGTTTTTTGTTAGGAACAAGATTTACGGTTTCAACAATTTCAGCA
1 CGTAAACAAGAGATGAACAGAGTTTTTTGTTAGGAACAAGATTTACGGTTTCAACAATTTCAGCA
2445994 AAAATAATCTGAGGTAGGTTGATTTTAATATTGTTTTCGAAAAAAATGTAACCACCAAAGATCTA
66 AAAATAATCTGAGGTAGGTTGATTTTAATATTGTTTTCGAAAAAAATGTAACCACCAAAGATCTA
2446059 AGGCTCTAAGAGTAGAATAACGACCTCTGGATGGTCGAAACCACCAAGGAA
131 AGGCTCTAAGAGTAGAATAACGACCTCTGGATGGTCGAAACCACCAAGGAA
2446110 TCATTAGATG
Statistics
Matches: 181, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
181 181 1.00
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.27
Consensus pattern (181 bp):
CGTAAACAAGAGATGAACAGAGTTTTTTGTTAGGAACAAGATTTACGGTTTCAACAATTTCAGCA
AAAATAATCTGAGGTAGGTTGATTTTAATATTGTTTTCGAAAAAAATGTAACCACCAAAGATCTA
AGGCTCTAAGAGTAGAATAACGACCTCTGGATGGTCGAAACCACCAAGGAA
Found at i:2446984 original size:20 final size:20
Alignment explanation
Indices: 2446947--2446985 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
2446937 AGATTGAGTG
* * *
2446947 GATTTTGATGTTGTTTGCAC
1 GATTTTAATGATGATTGCAC
2446967 GATTTTAATGATGATTGCA
1 GATTTTAATGATGATTGCA
2446986 AGTTTAGGAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (20 bp):
GATTTTAATGATGATTGCAC
Found at i:2447190 original size:20 final size:20
Alignment explanation
Indices: 2447167--2447204 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
2447157 TTCCCCTGTG
*
2447167 GGGGGAATCGGTTCCCTCAA
1 GGGGGAATCGATTCCCTCAA
*
2447187 GGGGGGATCGATTCCCTC
1 GGGGGAATCGATTCCCTC
2447205 TGCACCAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.26, G:0.37, T:0.21
Consensus pattern (20 bp):
GGGGGAATCGATTCCCTCAA
Found at i:2447190 original size:21 final size:20
Alignment explanation
Indices: 2447144--2447204 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 20
2447134 CCAGAACCCC
*
2447144 AGGGGGGTATCGATTCCC-CTG
1 AGGGGGG-ATCGATTCCCTC-A
* *
2447165 TGGGGGGAATCGGTTCCCTCA
1 AGGGGGG-ATCGATTCCCTCA
2447186 AGGGGGGATCGATTCCCTC
1 AGGGGGGATCGATTCCCTC
2447205 TGCACCAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
20 11 0.33
21 21 0.64
22 1 0.03
ACGTcount: A:0.15, C:0.25, G:0.38, T:0.23
Consensus pattern (20 bp):
AGGGGGGATCGATTCCCTCA
Found at i:2464249 original size:95 final size:95
Alignment explanation
Indices: 2464139--2464393 Score: 397
Period size: 95 Copynumber: 2.7 Consensus size: 95
2464129 TTATAATATT
*
2464139 TATACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACGCCCTGGGTTTATGGATAAG
1 TATACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACGCCCTGGCTTTATGGATAAG
2464204 ATTCAGCTAGCCTGATAAAGGTGATTATAA
66 ATTCAGCTAGCCTGATAAAGGTGATTATAA
* * * *
2464234 TATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAAAGCCCCGGCTTTATGGATAAT
1 TATACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACGCCCTGGCTTTATGGATAAG
2464299 ATTCAGCTAGCCTGATAAAGGTGATTATAA
66 ATTCAGCTAGCCTGATAAAGGTGATTATAA
*
2464329 TAT-CTATATAATGATG-TTGAGTTGTCCCTCTAAAGTAATTGGTTAAACGCCCTGGCTTTATGG
1 TATAC-A-ATAA--A-GCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACGCCCTGGCTTTATGG
2464392 AT
61 AT
2464394 CCACCTAGCC
Statistics
Matches: 146, Mismatches: 9, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
94 1 0.01
95 94 0.64
96 4 0.03
98 46 0.32
99 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (95 bp):
TATACAATAAAGCTTGAGTTGTCCCTCTAAAGCAATTGGTTAAACGCCCTGGCTTTATGGATAAG
ATTCAGCTAGCCTGATAAAGGTGATTATAA
Found at i:2465680 original size:85 final size:85
Alignment explanation
Indices: 2465532--2467923 Score: 2674
Period size: 85 Copynumber: 28.1 Consensus size: 85
2465522 TAAAGGAACT
* *
2465532 ATTTGCAGCATAACTCAAGGCGAGAAGGGTTATCTATCAACCAAGACCTTCGAGTTCGATTACAT
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
2465597 TCAGCTCAAAGGCATATCAA
66 TCAGCTCAAAGGCATATCAA
* * ** * * * *
2465617 ATTTACAGCATATCTCAAGACGAGAAGGACTAACTGTCAACCATGACCTTTGAGTTCTATTACAT
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
*
2465682 TCAGCTTAAAGGCATATCAA
66 TCAGCTCAAAGGCATATCAA
* * * *** * ** *
2465702 ATTTACATCATAACTTAAGGCAAGAAGGGTTATCTAAAAAGCGTGACCTTCGAGTTCAATTACAT
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
* *
2465767 TCATCTCAAAGGCATGTCAA
66 TCAGCTCAAAGGCATATCAA
* * * * *
2465787 ATTTACAGCATAACTTAAGGTGAGAAGGGTTGTCTATCAACCAAGACCTTCGAGTTCTATTACAT
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
2465852 TCAGCTCAAAGGCATATCAA
66 TCAGCTCAAAGGCATATCAA
* * **
2465872 ATTTACAGAATAACTCAAGGCGAGAAGGGTTATCTGTTAACCGTGACCTTCGAAGTTCGATTACA
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCG-AGTTCGATTACA
*
2465937 TTCAGCTCAAAGGCACATCAA
65 TTCAGCTCAAAGGCATATCAA
* * * *
2465958 ATTTACAGCATAACTCAAGGCAAGAAGGGCTATCTGTCAACCAAGACTTTTGAGTTCGATTACAC
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACA-
2466023 TT-AGCTCAAAGGCATATCAA
65 TTCAGCTCAAAGGCATATCAA
* ** * ***
2466043 ATTTACAACATAACGAAAGGCGAGAAGGGTTATCTATCAACTGGGACCTTCGAGTTCGATTACAT
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
* **
2466108 TCAACTCAAAGGCACGTCAA
66 TCAGCTCAAAGGCATATCAA
* * * * * *
2466128 ATTTACAGCATAGCTCAAGGCAAGAAGGGCTATCTGTCAACCAAGGA-CTTCAAGTTCAATTATA
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAA-GACCTTCGAGTTCGATTACA
*
2466192 TTCAACTCAAAGGCATATCAA
65 TTCAGCTCAAAGGCATATCAA
* * * ** *
2466213 ATTTACAACATAACTCATGGCGAGGAGGGTTATCTGTCAACCGTGACCTTCGAGTTTGATTACAT
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
* * *
2466278 TCAACTCAAAGGAACATCAA
66 TCAGCTCAAAGGCATATCAA
* * * * *
2466298 ATTTACAGCATAGCTCAAGGCGAGAATGGTTATTTGTCAACAAAAACCCTTCGAGTTCGATTACA
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGA-CCTTCGAGTTCGATTACA
* *
2466363 TTCAGCTCAAATGCATATCAC
65 TTCAGCTCAAAGGCATATCAA
* * *
2466384 ATTTACAGCATAACTCAAGGCTAGAAGGGTTATCTGTCAACAAAAAACCTTCGAGTTCGATTACA
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAAC-CAAGACCTTCGAGTTCGATTACA
* *
2466449 TTCAACTCAAACGCATATCAA
65 TTCAGCTCAAAGGCATATCAA
* * * * ** *
2466470 ATTTACAACATAGCTCAAGGCGAGAAGGGCTATGTGTCAACCTTGACCTTCGAAGTTTGATTACA
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCG-AGTTCGATTACA
* **
2466535 TTAAGCTCAAAGGCACGTCAA
65 TTCAGCTCAAAGGCATATCAA
* * * * * * *
2466556 ATTTACAGCATAACTAAAGGCAAGAAGGGTTATCTATCATCCATGACCTTCGTGTTCGATTACAC
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
*
2466621 TCAGCTCAAAGGAATATCAA
66 TCAGCTCAAAGGCATATCAA
* * * * ** *
2466641 ATTTTCAACATAACTCAAGGC-AAAAGGGTTATCTATCAACCGTGACCTTCGAGTTCAATTACAT
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
* *
2466705 TCAGCTCAAAGTCATGTCAA
66 TCAGCTCAAAGGCATATCAA
* * * * * *
2466725 ATTTACAACATAGCTCAAGGCAAGAAGAGTTATCTGTCAACGAAGACCTTCGAGTTCGATTACAC
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
* * *
2466790 TCAACTCAAGGGCATATGAA
66 TCAGCTCAAAGGCATATCAA
* ** * * *
2466810 ATTTATAGCATAAC-CAAGGCGAGAAGGGTTATCTGTCAACCGTGAACTTAGAGTTTGATTACAT
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
*
2466874 TCAGCTCAAAGGCACATCAA
66 TCAGCTCAAAGGCATATCAA
* * * * *
2466894 ATTTAAAGCATAGCTCAAGGCGAGAAGGGTTATCTGTCAACAAAATACGTTCGAGTTCGATTACA
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAAC-CAAGACCTTCGAGTTCGATTACA
2466959 TTCAGCTCAAAGGCATATCAA
65 TTCAGCTCAAAGGCATATCAA
* * * * *
2466980 ATTTACATCGTTAACTCAAGGCGAGAAGGGTTATCTG-CAGCAAAAGACCTTCGAGTTTGATTAC
1 ATTTACAGC-ATAACTCAAGGCGAGAAGGGTTATCTGTCAAC-CAAGACCTTCGAGTTCGATTAC
2467044 ATTCAGCTCAAAGGCATATCAA
64 ATTCAGCTCAAAGGCATATCAA
* * * * * ** *
2467066 ATTTACAACGTAACTCAAAGAGATAAGGGTTATCCATCAACCAAGACCTTCAAGTTCGATTACAC
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACA-
2467131 TT-AGCTCAAAGGCATATCAA
65 TTCAGCTCAAAGGCATATCAA
* ** * *
2467151 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATTTGTCAATAAAAAGAGCTTCGAGTTCGATTAT
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTC-A-ACCAAGACCTTCGAGTTCGATTAC
** * * *
2467216 GCTCAGCTCAATGGCACATTAA
64 ATTCAGCTCAAAGGCATATCAA
* *** * * *
2467238 ATTTACAGCATAGCTCAAAATGAGAAGGGTTATCAGTCAACAAAAGACCTTCGAGGTCGATTACA
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAAC-CAAGACCTTCGAGTTCGATTACA
* *
2467303 CTCAACTCAAAGGCATATCAA
65 TTCAGCTCAAAGGCATATCAA
* *
2467324 ATTTACAGCATAACTAAAGGCGAGAAGGGTTATCTGTCAACAAAAAGACCTTCGAGTTCGATTAC
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAAC--CAAGACCTTCGAGTTCGATTAC
* * *
2467389 ACTCAGCTCAAGGGCACATCAA
64 ATTCAGCTCAAAGGCATATCAA
* * * * *
2467411 ATTTAGAGCATAGCTCAAGGTGAGAAGGGTTATCTGTCAACAAAATACCTTCGAGTTCGATTACA
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAAC-CAAGACCTTCGAGTTCGATTACA
2467476 TTCAGCTCAAAGGCATATCAA
65 TTCAGCTCAAAGGCATATCAA
* * * * * *
2467497 ATTTATAGCGTAACTCAAGGCGGGAAGGGTTATCTGTCAACCAAGACCTTTGAGTTCCATTACAC
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
*
2467562 TCAGCTCAAAGGAATATCAA
66 TCAGCTCAAAGGCATATCAA
* * *
2467582 A-TTA-A-C-TCAA--GAA-G-G-GAAGGGTTATCTGTCAAGCAAAAGACCTTCGAGTTTGATTA
1 ATTTACAGCAT-AACTCAAGGCGAGAAGGGTTATCTGTCAA-C-CAAGACCTTCGAGTTCGATTA
* *
2467638 CATTTAGCTCAAAGGCATATCCA
63 CATTCAGCTCAAAGGCATATCAA
* * * * *
2467661 ATTTACAGCATAACTCAAGGCGAGGAGGGTTATCTATCAGCAAAGACCTTCGAGTACGATTACAT
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
*
2467726 TCAGCTCAAAGGCATATCCA
66 TCAGCTCAAAGGCATATCAA
* ** * * *
2467746 ATTTATAGCATTGCTCAAGGCAAGAAGGGTTATCTGTCAGCAAAGACCTTCGAGTTCGATTACAT
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
* *
2467811 TAAG-TCAAAGGCATATCTA
66 TCAGCTCAAAGGCATATCAA
* * * * * * * * *
2467830 ATTTATAGCATAGCTCAATGCAAGAAGGGTTATCTGTTAACAAATACCTTCGAGTTTGATTCCAT
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
* * *
2467895 TCAGCTCAAGGGTATGTCAA
66 TCAGCTCAAAGGCATATCAA
2467915 ATTTACAGC
1 ATTTACAGC
2467924 TTAGCTTAAG
Statistics
Matches: 1945, Mismatches: 330, Indels: 64
0.83 0.14 0.03
Matches are distributed among these distances:
77 17 0.01
78 2 0.00
79 38 0.02
80 5 0.00
81 2 0.00
82 6 0.00
83 2 0.00
84 226 0.12
85 915 0.47
86 544 0.28
87 188 0.10
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (85 bp):
ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACAT
TCAGCTCAAAGGCATATCAA
Found at i:2466207 original size:341 final size:340
Alignment explanation
Indices: 2465532--2467923 Score: 2655
Period size: 341 Copynumber: 7.0 Consensus size: 340
2465522 TAAAGGAACT
* * *
2465532 ATTTGCAGCATAACTCAAGGCGAGAAGGGTTATCTATCAACCAAGACCTTCGAGTTCGATTACAT
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCATGACCTTCGAGTTCGATTACAT
* * ** * * *
2465597 TCAGCTCAAAGGCATATCAAATTTACAGCATATCTCAAGACGAGAAGGACTAACTGTCAACCATG
66 TCAGCTCAAAGGCATATCAAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAG
* * * * *
2465662 ACCTTTGAGTTCTATTACATTCAGCTTAAAGGCATATCAAATTTACATCATAACTTAAGGCAAGA
131 ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTACAACATAACTCAAGGCAAGA
*** ** * * *
2465727 AGGGTTATCTAAAAAGC-GTGACCTTCGAGTTCAATTACATTCATCTCAAAGGCATGTCAAATTT
196 AGGGTTATCTGTCAA-CAAAGACCTTCGAGTTCGATTACATTCAACTCAAAGGCATATCAAATTT
* * * * * *
2465791 ACAGCATAACTTAAGGTGAGAAGGGTTGTCTATCAACCAAGACCTTCGAGTTCTATTACATTCAG
260 ACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCAAGTTCGATTACATTCAG
*
2465856 CTCAAAGGCATATCAA
325 CTCAAAGGCACATCAA
* * *
2465872 ATTTACAGAATAACTCAAGGCGAGAAGGGTTATCTGTTAACCGTGACCTTCGAAGTTCGATTACA
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCATGACCTTCG-AGTTCGATTACA
* * * *
2465937 TTCAGCTCAAAGGCACATCAAATTTACAGCATAACTCAAGGCAAGAAGGGCTATCTGTCAACCAA
65 TTCAGCTCAAAGGCATATCAAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAA
* * ** *
2466002 GACTTTTGAGTTCGATTACACTT-AGCTCAAAGGCATATCAAATTTACAACATAACGAAAGGCGA
130 GACCTTCGAGTTCGATTACA-TTCAGCTCAAAGGCATATCAAATTTACAACATAACTCAAGGCAA
* *** **
2466066 GAAGGGTTATCTATCAACTGGGACCTTCGAGTTCGATTACATTCAACTCAAAGGCACGTCAAATT
194 GAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGATTACATTCAACTCAAAGGCATATCAAATT
* * * * *
2466131 TACAGCATAGCTCAAGGCAAGAAGGGCTATCTGTCAACCAAGGA-CTTCAAGTTCAATTATATTC
259 TACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAA-GACCTTCAAGTTCGATTACATTC
* *
2466195 AACTCAAAGGCATATCAA
323 AGCTCAAAGGCACATCAA
* * * * *
2466213 ATTTACAACATAACTCATGGCGAGGAGGGTTATCTGTCAACCGTGACCTTCGAGTTTGATTACAT
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCATGACCTTCGAGTTCGATTACAT
* * * * * * *
2466278 TCAACTCAAAGGAACATCAAATTTACAGCATAGCTCAAGGCGAGAATGGTTATTTGTCAACAAAA
66 TCAGCTCAAAGGCATATCAAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAG
* * * *
2466343 ACCCTTCGAGTTCGATTACATTCAGCTCAAATGCATATCACATTTACAGCATAACTCAAGGCTAG
131 A-CCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTACAACATAACTCAAGGCAAG
* *
2466408 AAGGGTTATCTGTCAACAAAAAACCTTCGAGTTCGATTACATTCAACTCAAACGCATATCAAATT
195 AAGGGTTATCTGTCAAC-AAAGACCTTCGAGTTCGATTACATTCAACTCAAAGGCATATCAAATT
* * * * ** * *
2466473 TACAACATAGCTCAAGGCGAGAAGGGCTATGTGTCAACCTTGACCTTCGAAGTTTGATTACATTA
259 TACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTC-AAGTTCGATTACATTC
*
2466538 AGCTCAAAGGCACGTCAA
323 AGCTCAAAGGCACATCAA
* * * * * *
2466556 ATTTACAGCATAACTAAAGGCAAGAAGGGTTATCTATCATCCATGACCTTCGTGTTCGATTACAC
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCATGACCTTCGAGTTCGATTACAT
* * * * * ***
2466621 TCAGCTCAAAGGAATATCAAATTTTCAACATAACTCAAGGC-AAAAGGGTTATCTATCAACCGTG
66 TCAGCTCAAAGGCATATCAAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAG
* * * *
2466685 ACCTTCGAGTTCAATTACATTCAGCTCAAAGTCATGTCAAATTTACAACATAGCTCAAGGCAAGA
131 ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTACAACATAACTCAAGGCAAGA
* * * * *
2466750 AGAGTTATCTGTCAACGAAGACCTTCGAGTTCGATTACACTCAACTCAAGGGCATATGAAATTTA
196 AGGGTTATCTGTCAACAAAGACCTTCGAGTTCGATTACATTCAACTCAAAGGCATATCAAATTTA
* ** * *
2466815 TAGCATAAC-CAAGGCGAGAAGGGTTATCTGTCAACCGTGAACTT-AGAGTTTGATTACATTCAG
261 CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCA-AGTTCGATTACATTCAG
2466878 CTCAAAGGCACATCAA
325 CTCAAAGGCACATCAA
* * * *
2466894 ATTTAAAGCATAGCTCAAGGCGAGAAGGGTTATCTGTCAACAAAAT-ACGTTCGAGTTCGATTAC
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAAC--CATGACCTTCGAGTTCGATTAC
* * *
2466958 ATTCAGCTCAAAGGCATATCAAATTTACATCGTTAACTCAAGGCGAGAAGGGTTATCTG-CAGCA
64 ATTCAGCTCAAAGGCATATCAAATTTACAGC-ATAACTCAAGGCGAGAAGGGTTATCTGTCAAC-
* * *
2467022 AAAGACCTTCGAGTTTGATTACATTCAGCTCAAAGGCATATCAAATTTACAACGTAACTCAAAG-
127 AAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTACAACATAACTCAAGGC
* ** * * *
2467086 AGATAAGGGTTATCCATCAACCAAGACCTTCAAGTTCGATTACACTT-AGCTCAAAGGCATATCA
192 A-AGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGATTACA-TTCAACTCAAAGGCATATCA
* ** * *
2467150 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATTTGTCAATAAAAAGAGCTTCGAGTTCGATTA
255 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTC-A-ACCAAGACCTTCAAGTTCGATTA
*** * *
2467215 TGCTCAGCTCAATGGCACATTAA
318 CATTCAGCTCAAAGGCACATCAA
* *** * * * *
2467238 ATTTACAGCATAGCTCAAAATGAGAAGGGTTATCAGTCAACAAAAGACCTTCGAGGTCGATTACA
1 ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAAC-CATGACCTTCGAGTTCGATTACA
* * *
2467303 CTCAACTCAAAGGCATATCAAATTTACAGCATAACTAAAGGCGAGAAGGGTTATCTGTCAACAAA
65 TTCAGCTCAAAGGCATATCAAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAAC--A
* * * * * * **
2467368 AAGACCTTCGAGTTCGATTACACTCAGCTCAAGGGCACATCAAATTTAGAGCATAGCTCAAGGTG
128 AAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTACAACATAACTCAAGGCA
* *
2467433 AGAAGGGTTATCTGTCAACAAAATACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAA
193 AGAAGGGTTATCTGTCAAC-AAAGACCTTCGAGTTCGATTACATTCAACTCAAAGGCATATCAAA
* * * ** * *
2467498 TTTATAGCGTAACTCAAGGCGGGAAGGGTTATCTGTCAACCAAGACCTTTGAGTTCCATTACACT
257 TTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCAAGTTCGATTACATT
* *
2467563 CAGCTCAAAGGAATATCAA
322 CAGCTCAAAGGCACATCAA
* * * *
2467582 A-TTA-A-C-TCAA--GAA-G-G-GAAGGGTTATCTGTCAAGCAAAAGACCTTCGAGTTTGATTA
1 ATTTACAGCAT-AACTCAAGGCGAGAAGGGTTATCTGTCAA-C-CATGACCTTCGAGTTCGATTA
* * * * *
2467638 CATTTAGCTCAAAGGCATATCCAATTTACAGCATAACTCAAGGCGAGGAGGGTTATCTATCAGCA
63 CATTCAGCTCAAAGGCATATCAAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACA
* * * * **
2467703 AAGACCTTCGAGTACGATTACATTCAGCTCAAAGGCATATCCAATTTATAGCATTGCTCAAGGCA
128 AAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTACAACATAACTCAAGGCA
* * *
2467768 AGAAGGGTTATCTGTCAGCAAAGACCTTCGAGTTCGATTACATT-AAGTCAAAGGCATATCTAAT
193 AGAAGGGTTATCTGTCAACAAAGACCTTCGAGTTCGATTACATTCAACTCAAAGGCATATCAAAT
* * * * * * * * * *
2467832 TTATAGCATAGCTCAATGCAAGAAGGGTTATCTGTTAACAAATACCTTCGAGTTTGATTCCATTC
258 TTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCAAGTTCGATTACATTC
* * **
2467897 AGCTCAAGGGTATGTCAA
323 AGCTCAAAGGCACATCAA
2467915 ATTTACAGC
1 ATTTACAGC
2467924 TTAGCTTAAG
Statistics
Matches: 1752, Mismatches: 268, Indels: 68
0.84 0.13 0.03
Matches are distributed among these distances:
333 85 0.05
334 27 0.02
335 76 0.04
336 17 0.01
337 79 0.05
338 66 0.04
339 76 0.04
340 185 0.11
341 569 0.32
342 124 0.07
343 149 0.09
344 152 0.09
345 75 0.04
346 72 0.04
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (340 bp):
ATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCATGACCTTCGAGTTCGATTACAT
TCAGCTCAAAGGCATATCAAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAG
ACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCAAATTTACAACATAACTCAAGGCAAGA
AGGGTTATCTGTCAACAAAGACCTTCGAGTTCGATTACATTCAACTCAAAGGCATATCAAATTTA
CAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCAAGTTCGATTACATTCAGC
TCAAAGGCACATCAA
Found at i:2468765 original size:14 final size:13
Alignment explanation
Indices: 2468738--2468767 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
2468728 GCATAATACG
2468738 TATATTACATTAT
1 TATATTACATTAT
2468751 TATATTACTATTAT
1 TATATTAC-ATTAT
2468765 TAT
1 TAT
2468768 TTTTATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (13 bp):
TATATTACATTAT
Found at i:2473516 original size:16 final size:16
Alignment explanation
Indices: 2473491--2473521 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2473481 AGATATAAAT
2473491 GAAAGAAAAAATTAAG
1 GAAAGAAAAAATTAAG
*
2473507 GAAAGTAAAAATTAA
1 GAAAGAAAAAATTAA
2473522 AGCTAGCTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (16 bp):
GAAAGAAAAAATTAAG
Done.