genome.fa.s797.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000797.1 Hibiscus syriacus cultivar Beakdansim tig00001545_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74876

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8561--8628	20	3.5	20	75	15	79	38	11	25	25	1.89
9107--9191	27	3.2	26	64	29	61	30	21	17	30	1.96
9104--9362	109	2.4	108	89	1	392	33	18	16	31	1.94
9104--9362	54	4.8	54	84	0	338	33	18	16	31	1.94
16412--16471	31	2.0	31	81	9	72	46	8	6	38	1.60
22729--22786	23	2.5	23	80	0	71	51	13	18	15	1.76
24264--24338	31	2.4	31	88	0	114	22	8	17	52	1.71
24802--24841	17	2.4	17	86	0	53	32	15	12	40	1.84
24848--24907	17	3.5	17	68	8	50	30	15	8	46	1.74
24898--24936	18	2.2	18	95	0	69	35	5	15	43	1.69
26451--26505	17	3.1	18	82	7	67	76	3	9	10	1.13
26451--26506	19	3.0	19	71	21	55	76	3	8	10	1.12
28570--28615	18	2.6	18	92	0	74	32	6	13	47	1.68
31197--31276	32	2.5	33	73	18	80	51	17	11	20	1.75
31581--31620	18	2.2	19	86	13	57	10	7	17	65	1.46
31757--31859	29	3.5	29	74	11	93	39	0	1	57	1.16
31745--31881	58	2.3	58	82	8	170	38	0	1	59	1.12
31779--31877	17	5.6	17	69	23	71	37	0	2	60	1.08
31895--31943	23	2.0	25	81	14	59	22	8	4	65	1.37
33184--33248	33	2.0	33	84	0	85	30	12	21	35	1.90
33877--33927	21	2.4	21	86	0	66	21	15	9	52	1.71
33864--33923	14	4.3	13	78	19	59	21	15	8	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39550--39625	20	3.8	19	81	11	89	42	19	3	34	1.70
39680--39720	20	2.0	20	86	9	57	46	9	2	41	1.50
39805--39862	31	1.9	30	86	10	82	44	8	3	43	1.51
44430--44492	31	2.0	31	87	6	92	34	6	23	34	1.81
50018--50110	47	2.0	48	93	2	161	43	10	23	22	1.85
50012--50126	47	2.5	46	85	5	160	43	9	21	25	1.83
58577--58818	81	3.0	79	84	4	272	28	21	11	37	1.89
59061--59732	54	12.4	54	84	2	839	25	20	19	35	1.96
60303--60371	21	3.4	21	80	4	70	30	18	20	30	1.97
63262--63504	81	3.0	82	80	1	265	31	19	10	39	1.85
63728--64288	54	10.4	54	84	3	628	25	18	20	35	1.96
70445--70511	28	2.4	28	92	0	107	16	8	32	41	1.79
71095--71141	18	2.7	18	86	3	69	27	29	8	34	1.87
72796--73045	129	1.9	129	83	1	322	34	12	20	33	1.89

Tables:   1

The End!