genome.fa.s7974.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007974.1 Hibiscus syriacus cultivar Beakdansim tig00110411_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  198168

Tables:   1   

This is table  1  of  1  ( 114 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9453--9627	82	2.1	82	89	4	264	29	19	15	36	1.92
9453--9628	41	4.3	41	82	7	223	28	19	15	35	1.93
9657--9852	42	4.7	42	75	9	159	23	22	20	32	1.98
10918--10990	30	2.5	29	91	6	112	23	12	12	52	1.72
12365--12393	14	2.1	14	100	0	58	37	6	6	48	1.57
12877--13259	177	2.1	183	90	4	618	42	3	8	45	1.51
16227--16285	31	1.9	31	89	0	91	16	13	13	55	1.68
17096--17169	31	2.4	31	88	0	103	47	14	13	24	1.81
18368--18423	27	2.1	27	96	0	103	39	5	16	39	1.71
19592--19656	32	2.0	32	84	0	85	41	12	13	32	1.82
36439--36489	25	2.0	27	84	7	70	58	0	3	37	1.16
37582--37737	84	1.8	85	84	1	215	28	20	21	30	1.98
37745--37829	36	2.5	34	88	5	127	32	9	17	40	1.82
37856--37939	36	2.4	35	88	4	116	44	17	17	20	1.88
37970--38028	30	2.0	30	87	12	86	33	10	16	38	1.83
38112--38516	37	11.9	37	62	23	138	41	13	17	26	1.87
37983--38365	102	3.8	103	84	3	438	39	12	18	29	1.88
38141--38665	167	3.1	167	93	0	872	41	12	17	28	1.86
38268--38414	65	2.3	65	86	2	197	41	12	17	27	1.86
38325--38518	102	1.9	102	86	4	275	43	13	15	26	1.85
38427--38581	65	2.4	65	82	4	179	40	12	19	27	1.88
37982--38628	269	2.4	268	75	11	679	39	12	18	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38813--39135	106	3.0	106	86	0	421	21	18	24	34	1.96
39713--39825	32	3.5	32	84	3	138	38	18	12	30	1.88
40893--40941	12	3.9	13	78	10	66	4	16	2	77	1.01
40893--40939	24	1.9	25	95	4	87	4	17	2	76	1.04
40893--40940	13	3.9	12	77	22	55	4	16	2	77	1.03
44253--44340	42	2.1	42	81	8	99	68	0	3	28	1.06
44418--44464	16	3.1	16	84	9	62	61	0	4	34	1.15
53879--53915	2	19.5	2	83	10	51	48	0	0	51	1.00
55613--55676	3	21.0	3	87	3	56	54	0	0	45	0.99
55981--56184	76	2.7	76	87	1	291	30	21	21	25	1.98
56129--56361	45	5.2	45	83	7	303	29	20	23	27	1.99
56130--56361	87	2.6	88	86	4	297	28	20	23	27	1.99
56312--56513	76	2.7	76	85	0	278	34	19	19	26	1.96
57603--57853	54	4.6	55	77	10	216	23	20	15	40	1.91
67366--67406	2	21.5	2	85	9	59	48	0	0	51	1.00
67777--67821	22	2.1	22	88	12	67	66	4	0	28	1.11
69138--69219	3	27.0	3	85	7	112	60	0	0	39	0.96
76361--76891	264	2.0	266	99	0	1048	31	15	23	29	1.96
82300--82496	88	2.3	86	87	4	272	34	27	13	24	1.93
82300--82497	44	4.6	44	84	1	240	33	27	13	25	1.93
83983--84185	101	2.0	101	100	0	406	30	21	16	31	1.96
92379--92430	26	2.0	25	81	11	59	53	0	1	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92387--92443	25	2.3	26	82	11	77	52	0	3	43	1.18
94042--94118	3	26.0	3	81	7	95	61	0	0	38	0.96
94257--94549	124	2.4	121	85	7	364	24	17	15	42	1.88
94470--94842	113	3.4	110	83	7	432	30	18	14	36	1.91
94744--94907	73	2.2	73	82	0	184	34	15	17	32	1.91
94631--95028	186	2.1	186	85	0	528	31	17	14	36	1.90
94817--95100	113	2.5	113	98	0	559	28	17	15	38	1.90
94519--95062	299	1.8	298	90	2	885	30	18	14	36	1.91
95787--96129	115	3.0	115	88	2	528	31	20	13	34	1.91
96083--96173	44	2.1	44	95	0	164	24	19	17	38	1.93
97442--97496	9	6.0	9	77	14	51	0	14	1	83	0.73
97444--97512	8	8.2	8	76	17	61	0	13	2	84	0.74
104848--104879	15	2.1	15	94	0	55	46	6	18	28	1.73
108724--108781	24	2.4	24	82	8	73	53	0	3	43	1.17
110286--110372	3	29.0	3	88	4	95	58	0	0	41	0.98
113328--113355	13	2.2	13	100	0	56	32	14	7	46	1.71
113997--114026	2	15.0	2	92	0	51	46	0	0	53	1.00
116365--116542	56	3.2	56	84	1	223	40	8	15	35	1.78
120538--120617	29	2.8	29	94	0	133	31	33	26	8	1.87
120690--120739	19	2.5	20	90	6	84	22	14	44	20	1.86
121275--121318	21	2.1	21	91	0	70	29	0	15	54	1.42
121305--121386	42	2.0	41	82	13	100	47	0	6	46	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121809--121871	17	3.4	17	74	18	54	39	0	11	49	1.38
121832--121875	23	2.0	23	81	4	54	40	0	9	50	1.34
125086--125198	48	2.6	41	77	17	127	42	0	9	47	1.36
125099--125232	48	2.8	48	93	2	218	41	0	8	49	1.40
125156--125294	60	2.3	61	88	7	210	42	0	10	46	1.44
125218--125345	48	2.7	47	89	7	183	42	0	10	47	1.37
125311--125359	14	3.7	14	84	15	68	36	0	14	48	1.44
125433--125795	60	6.3	59	89	8	554	41	0	11	46	1.39
125433--125795	117	3.2	119	91	6	583	41	0	11	46	1.39
125143--125795	274	2.3	279	82	11	775	41	1	10	45	1.50
125763--125810	14	3.6	14	81	16	66	35	0	16	47	1.47
125877--126022	11	12.1	12	66	22	51	43	0	12	44	1.42
125892--126115	49	4.3	49	83	12	297	41	0	11	46	1.39
125119--126119	451	2.3	435	91	6	1637	41	2	11	45	1.52
125557--126216	324	2.0	329	94	4	1154	40	3	11	44	1.57
125941--126119	60	3.2	60	80	17	256	41	0	11	47	1.39
126066--126135	25	3.1	22	79	16	63	38	0	11	50	1.39
126001--126115	48	2.3	49	89	2	169	41	0	10	47	1.38
126087--126134	14	3.6	14	81	16	66	35	0	16	47	1.47
126087--126135	25	2.0	25	95	0	89	36	0	16	46	1.47
128461--128509	22	2.2	22	96	0	89	38	14	2	44	1.56
128453--128578	30	4.4	30	73	21	94	46	9	1	42	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129258--129293	11	3.2	11	84	7	54	38	19	22	19	1.93
131871--131904	9	3.7	9	92	4	50	0	52	0	47	1.00
133778--133814	19	1.9	19	88	0	56	21	2	32	43	1.67
134351--134402	18	2.9	18	88	0	77	26	32	15	25	1.95
135602--135649	20	2.4	20	100	0	96	22	27	22	27	1.99
135760--135810	21	2.4	21	90	0	84	33	27	21	17	1.96
141489--141546	23	2.7	21	76	10	62	29	17	15	37	1.90
142018--142053	14	2.6	14	91	4	56	47	8	5	38	1.57
147498--147584	46	1.9	45	85	2	120	40	32	10	17	1.83
151143--151234	24	3.8	24	88	2	132	42	18	13	26	1.86
151130--151234	48	2.2	47	84	5	147	43	18	12	25	1.84
155558--155642	24	3.5	24	80	6	100	41	18	14	25	1.88
155546--155652	48	2.2	48	85	6	153	42	18	13	25	1.86
157842--157874	17	2.0	17	88	5	50	39	6	6	48	1.53
160230--160314	24	3.5	24	88	0	125	41	20	12	25	1.88
163663--163722	23	2.6	23	91	0	93	30	30	13	26	1.94
171903--171970	27	2.6	27	95	4	122	32	11	14	41	1.82
174069--174111	17	2.5	17	96	0	77	39	18	11	30	1.86
183032--183070	17	2.3	17	95	0	69	35	30	0	33	1.58
183396--183430	18	1.9	18	94	0	61	25	31	22	20	1.98
183609--183676	32	2.2	29	80	12	75	33	20	4	41	1.72
185582--185716	54	2.5	54	91	0	216	24	26	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192248--192321	32	2.3	32	85	0	94	22	28	31	17	1.97
193406--193457	26	2.0	27	84	3	70	25	15	23	36	1.93
195266--195427	60	2.7	60	77	12	179	37	5	24	32	1.79
196615--196652	2	19.0	2	100	0	76	50	0	0	50	1.00

Tables:   1

The End!