genome.fa.s7975.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007975.1 Hibiscus syriacus cultivar Beakdansim tig00110412_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47248

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700--739	18	2.2	18	95	0	71	20	2	15	62	1.43
5347--5395	18	2.7	18	74	0	53	59	2	0	38	1.09
6476--6504	2	14.5	2	100	0	58	51	0	0	48	1.00
6571--6647	30	2.6	30	85	0	109	23	35	7	33	1.84
7764--7828	30	2.1	32	83	11	82	47	9	3	40	1.51
11116--11206	31	2.9	31	93	0	155	24	23	13	39	1.90
11085--11206	62	2.0	61	82	3	147	27	22	12	38	1.89
13299--13347	2	24.5	2	91	0	80	51	4	0	44	1.20
13413--13445	16	2.1	16	88	5	50	33	0	12	54	1.37
17495--17556	27	2.3	27	97	0	115	24	20	25	29	1.99
28695--28727	17	2.0	17	88	5	50	42	6	3	48	1.43
30085--30115	16	2.0	15	93	6	53	25	19	25	29	1.99
30780--30836	18	3.2	17	74	18	53	42	3	0	54	1.17
30935--30989	16	3.4	16	79	0	65	10	12	25	50	1.73
31305--31373	20	3.5	20	77	13	72	30	30	14	24	1.95
31409--31467	20	3.0	20	87	2	75	37	23	16	22	1.94
34994--35057	20	3.5	20	74	24	77	45	25	18	10	1.82
34994--35092	34	2.9	34	90	0	153	41	23	20	15	1.89
35145--35183	20	2.0	20	100	0	78	17	20	20	41	1.91
35246--35295	25	2.0	25	96	0	91	26	8	22	44	1.80
35672--35758	39	2.2	39	97	0	165	47	20	14	17	1.83
35999--36072	20	3.7	20	81	0	103	20	20	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36181--36222	14	3.1	14	79	3	50	54	9	0	35	1.33
37643--37741	42	2.4	42	74	6	101	25	17	34	23	1.96
39976--40020	13	3.5	13	90	0	72	75	13	8	2	1.13
39976--40026	26	2.0	24	88	7	75	74	13	9	1	1.15
39980--40026	13	3.8	12	88	5	60	74	12	10	2	1.16
40233--40282	22	2.3	22	86	6	66	26	14	36	24	1.93
40410--40493	20	4.2	20	80	8	109	17	16	23	41	1.89
40410--40493	39	2.1	40	88	2	125	17	16	23	41	1.89
40517--40570	20	2.7	20	77	11	65	27	12	29	29	1.94
42834--43100	42	6.3	43	78	3	222	31	17	23	26	1.97
42835--43100	85	3.1	84	74	11	238	31	18	23	27	1.97
45803--45900	40	2.5	39	86	5	133	35	19	19	25	1.95
46067--46115	20	2.5	20	96	0	89	32	8	34	24	1.85
46079--46139	10	6.1	10	71	5	52	36	3	39	21	1.70
46079--46126	20	2.4	20	85	0	60	37	4	35	22	1.74
47111--47159	7	7.4	7	82	13	59	40	12	28	18	1.86
47118--47159	13	3.2	13	83	10	59	40	14	28	16	1.88
47128--47170	19	2.2	20	91	4	70	41	18	25	13	1.88
47128--47181	20	2.8	20	86	8	58	42	18	22	16	1.89

Tables:   1

The End!