genome.fa.s798.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000798.1 Hibiscus syriacus cultivar Beakdansim tig00001549_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118331

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4901--4940	19	2.0	20	90	4	64	37	12	10	40	1.77
14404--14437	10	3.4	10	100	0	68	17	11	0	70	1.16
14592--14636	20	2.2	20	84	0	54	13	22	2	62	1.42
17851--17899	23	2.1	23	85	7	64	28	2	12	57	1.46
19245--19434	38	5.1	36	70	9	105	34	19	8	36	1.83
19241--19641	75	5.4	76	83	5	305	32	21	9	36	1.86
19286--19829	144	3.8	140	78	9	452	29	22	10	37	1.88
19286--19829	73	7.5	71	81	8	451	29	22	10	37	1.88
19626--19658	16	2.1	16	88	5	50	21	21	12	45	1.84
19807--19859	15	3.5	15	100	0	106	22	28	18	30	1.98
28942--28983	18	2.3	19	84	12	61	59	4	14	21	1.53
31056--31094	17	2.3	17	86	8	53	10	17	7	64	1.48
31379--31446	21	3.2	21	83	4	84	35	7	25	32	1.83
54553--54594	18	2.3	18	84	8	50	16	0	9	73	1.08
57682--57762	18	4.7	18	82	14	100	24	0	6	69	1.11
58814--58881	28	2.5	26	79	15	75	61	5	0	32	1.20
60745--60794	24	2.1	24	85	7	66	44	4	18	34	1.68
62952--62978	12	2.2	12	100	0	54	59	0	33	7	1.25
63117--63247	60	2.1	63	82	8	155	35	21	15	28	1.94
63527--63605	39	2.0	39	90	0	122	45	18	25	10	1.81
68048--68239	53	3.6	53	80	3	226	26	13	18	41	1.87
68048--68239	106	1.8	107	87	1	287	26	13	18	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75115--75153	19	2.1	19	100	0	78	35	15	15	33	1.89
76558--76592	6	5.8	6	89	0	52	14	34	5	45	1.68
76555--76593	12	3.2	12	88	0	60	12	33	10	43	1.77
81403--81457	6	9.0	6	76	11	58	78	0	18	3	0.90
82647--82684	18	2.2	18	95	4	69	60	15	13	10	1.59
83001--83434	116	3.7	115	74	6	324	37	13	21	27	1.92
83443--83553	44	2.5	44	82	0	132	34	15	14	36	1.88
85664--85697	18	1.9	18	94	5	61	17	11	0	70	1.16
85783--85822	18	2.3	18	86	4	55	20	17	5	57	1.58
85845--85914	31	2.3	31	94	0	122	12	25	4	57	1.54
88988--89552	58	9.8	58	87	2	753	35	10	19	33	1.87
88988--89561	234	2.5	232	85	4	793	35	10	20	33	1.87
89786--89997	68	3.1	67	84	3	223	29	14	23	32	1.94
94559--94817	58	4.5	58	93	0	412	33	12	20	32	1.90
94798--94839	22	1.9	22	95	0	75	54	14	9	21	1.68
94740--94899	82	2.0	82	88	2	243	37	12	18	31	1.88
94682--94957	140	2.0	138	89	2	428	35	12	19	32	1.89
94819--95033	58	3.7	57	88	4	299	34	12	20	33	1.89
94624--94992	198	1.9	195	90	3	589	33	12	20	33	1.90
95251--95510	68	3.9	68	88	1	371	30	15	24	29	1.96
95654--95769	49	2.4	49	94	0	196	40	5	19	34	1.74
96776--96805	15	2.0	15	93	0	51	36	0	6	56	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101935--102008	19	3.7	19	87	5	103	17	22	33	25	1.96
105198--105230	16	2.0	17	88	5	50	21	24	12	42	1.86
110703--110747	22	2.0	22	91	0	72	35	2	11	51	1.50
110896--111099	61	3.3	61	81	3	221	29	15	24	30	1.95
112550--112629	28	2.9	28	100	0	160	53	13	7	25	1.66
113221--113280	4	15.0	4	79	10	52	68	1	1	28	1.09

Tables:   1

The End!