Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007980.1 Hibiscus syriacus cultivar Beakdansim tig00110419_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1499237
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 6 of 8
Found at i:982316 original size:21 final size:21
Alignment explanation
Indices: 982281--982345 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
982271 ATCCCTTAGC
* * *
982281 AAAAGGATCGATCCCTTTGACC
1 AAAAGAATTGATCCCTTTGA-A
* *
982303 AAATG-ATTGATCCCCTTGAA
1 AAAAGAATTGATCCCTTTGAA
*
982323 AAAAGAATTGATCCCTTGGAA
1 AAAAGAATTGATCCCTTTGAA
982344 AA
1 AA
982346 CAGTGGGTTT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
20 4 0.11
21 27 0.77
22 4 0.11
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (21 bp):
AAAAGAATTGATCCCTTTGAA
Found at i:985723 original size:21 final size:21
Alignment explanation
Indices: 985669--985726 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
985659 TCTCTAGCTT
* **
985669 AAAGGATCGATCCATTTGACC
1 AAAGGATCGATCCCTTTGAAA
* **
985690 AAATGATATATCCCTTTGAAA
1 AAAGGATCGATCCCTTTGAAA
985711 AAAGGATCGATCCCTT
1 AAAGGATCGATCCCTT
985727 GGACAATAGT
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.36, C:0.21, G:0.16, T:0.28
Consensus pattern (21 bp):
AAAGGATCGATCCCTTTGAAA
Found at i:985842 original size:20 final size:21
Alignment explanation
Indices: 985822--985861 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
985812 CGAAATATTT
985822 GAAAAAGGATCGATCCCTTTG
1 GAAAAAGGATCGATCCCTTTG
* * *
985843 GTAAAATGATTGATCCCTT
1 GAAAAAGGATCGATCCCTT
985862 GTGCATTAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (21 bp):
GAAAAAGGATCGATCCCTTTG
Found at i:987571 original size:19 final size:19
Alignment explanation
Indices: 987547--987584 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
987537 AGGTAAGAAT
987547 CATAACCATCATCTCCTAA
1 CATAACCATCATCTCCTAA
987566 CATAACCATCATCTCCTAA
1 CATAACCATCATCTCCTAA
987585 ACTTCAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.26
Consensus pattern (19 bp):
CATAACCATCATCTCCTAA
Found at i:990657 original size:2 final size:2
Alignment explanation
Indices: 990650--990675 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
990640 ACCTTTCAAA
990650 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
990676 CATTTTATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:993746 original size:24 final size:26
Alignment explanation
Indices: 993719--993777 Score: 68
Period size: 29 Copynumber: 2.2 Consensus size: 26
993709 TCCTACATGG
*
993719 TTAATTT-A-CTTCACTGTAATTTGT
1 TTAATTTCATCTTCAATGTAATTTGT
993743 TTAATTGCTTCATCTTCAATGTAATTTGT
1 TTAA-T--TTCATCTTCAATGTAATTTGT
993772 TTAATT
1 TTAATT
993778 GTTTATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
24 4 0.14
25 1 0.03
26 1 0.03
27 2 0.07
28 2 0.07
29 19 0.66
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.54
Consensus pattern (26 bp):
TTAATTTCATCTTCAATGTAATTTGT
Found at i:993935 original size:20 final size:20
Alignment explanation
Indices: 993875--993937 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 20
993865 ACTTGTTATT
993875 TTGTTAAGGTAATATGTTTAA
1 TTGTT-AGGTAATATGTTTAA
**
993896 TTGTTTATCTATAATATGTTTAA
1 TTG-TTA--GGTAATATGTTTAA
*
993919 TTGTTAGGTAATCTGTTTA
1 TTGTTAGGTAATATGTTTA
993938 GAATTTAGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
20 10 0.29
21 4 0.12
22 5 0.15
23 15 0.44
ACGTcount: A:0.29, C:0.03, G:0.16, T:0.52
Consensus pattern (20 bp):
TTGTTAGGTAATATGTTTAA
Found at i:997494 original size:4 final size:4
Alignment explanation
Indices: 997485--997900 Score: 832
Period size: 4 Copynumber: 104.0 Consensus size: 4
997475 ATATGAAAAG
997485 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
997533 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
997581 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
997629 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
997677 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
997725 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
997773 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
997821 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
997869 CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA
997901 TACCGTAATA
Statistics
Matches: 412, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 412 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:998547 original size:17 final size:17
Alignment explanation
Indices: 998525--998566 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
998515 AAATGTATAT
*
998525 AATATATGGTTTTTGAA
1 AATATATAGTTTTTGAA
*
998542 AATATATATTTTTTGAA
1 AATATATAGTTTTTGAA
998559 AATATATA
1 AATATATA
998567 TATAATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.48
Consensus pattern (17 bp):
AATATATAGTTTTTGAA
Found at i:998567 original size:21 final size:21
Alignment explanation
Indices: 998543--998611 Score: 104
Period size: 21 Copynumber: 3.3 Consensus size: 21
998533 GTTTTTGAAA
*
998543 ATATATATTTTTTGAAAATAT
1 ATATATAATTTTTGAAAATAT
*
998564 ATATATAATTTTTGAAAACAT
1 ATATATAATTTTTGAAAATAT
998585 AT-TATAATTTTTGAAAATAT
1 ATATATAATTTTTGAAAATAT
998605 AATATAT
1 -ATATAT
998612 GTTATATAGT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
20 17 0.40
21 23 0.53
22 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.48
Consensus pattern (21 bp):
ATATATAATTTTTGAAAATAT
Found at i:998610 original size:20 final size:20
Alignment explanation
Indices: 998534--998610 Score: 106
Period size: 20 Copynumber: 4.0 Consensus size: 20
998524 TAATATATGG
998534 TTTTTGAAAATAT-ATAT--
1 TTTTTGAAAATATAATATAA
998551 TTTTTGAAAATATATATATAA
1 TTTTTGAAAATATA-ATATAA
* *
998572 TTTTTGAAAACATATTATAA
1 TTTTTGAAAATATAATATAA
998592 TTTTTGAAAATATAATATA
1 TTTTTGAAAATATAATATA
998611 TGTTATATAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
17 13 0.25
19 4 0.08
20 22 0.42
21 13 0.25
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.48
Consensus pattern (20 bp):
TTTTTGAAAATATAATATAA
Found at i:998657 original size:3 final size:3
Alignment explanation
Indices: 998645--998720 Score: 67
Period size: 3 Copynumber: 26.3 Consensus size: 3
998635 ATAGTGTATG
998645 TAT TATT TAT TA- TAT TAT ATAT ATAT TAT T-T TA- TAT T-T TA- TATT
1 TAT TA-T TAT TAT TAT TAT -TAT -TAT TAT TAT TAT TAT TAT TAT TA-T
998689 TAT TA- TAT TA- TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
998721 CAATTTATTT
Statistics
Matches: 63, Mismatches: 0, Indels: 20
0.76 0.00 0.24
Matches are distributed among these distances:
2 14 0.22
3 37 0.59
4 12 0.19
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:998720 original size:23 final size:22
Alignment explanation
Indices: 998645--998720 Score: 88
Period size: 21 Copynumber: 3.5 Consensus size: 22
998635 ATAGTGTATG
998645 TATTATTTATTATATTA-TATAT
1 TATTA-TTATTATATTATTATAT
998667 ATATTATT-TTATATT-TTATATT
1 -TATTATTATTATATTATTATA-T
998689 TATTA-TATTATATTATTATTAT
1 TATTATTATTATATTATTA-TAT
998711 TATTATTATT
1 TATTATTATT
998721 CAATTTATTT
Statistics
Matches: 47, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
20 1 0.02
21 23 0.49
22 12 0.26
23 11 0.23
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (22 bp):
TATTATTATTATATTATTATAT
Found at i:998727 original size:37 final size:37
Alignment explanation
Indices: 998648--998729 Score: 107
Period size: 37 Copynumber: 2.2 Consensus size: 37
998638 GTGTATGTAT
*
998648 TATTTATTATATTATATATATATTATTTTATATTTTA
1 TATTTATTATATTATATATATATTATTTTATATTTCA
998685 TATTTATTATATTATAT-TATTATTATTATTAT-TATTCA
1 TATTTATTATATTATATATA-TATTATT-TTATAT-TTCA
998723 -ATTTATT
1 TATTTATT
998730 TCTAGGTTCA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
36 2 0.05
37 32 0.78
38 7 0.17
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (37 bp):
TATTTATTATATTATATATATATTATTTTATATTTCA
Found at i:998792 original size:37 final size:37
Alignment explanation
Indices: 998749--998826 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
998739 AAATCCAATC
* *
998749 CAAATAAAAGTCGAACAAAGTCCATCCTGGTCCAAGT
1 CAAATAAAAGTCCAACAAAGTCCATCCCGGTCCAAGT
998786 CAAATAAAAGTCCAACAAAGTCCATCCCGGTCCAAGT
1 CAAATAAAAGTCCAACAAAGTCCATCCCGGTCCAAGT
998823 CAAA
1 CAAA
998827 GGCAAGTCCA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.42, C:0.27, G:0.14, T:0.17
Consensus pattern (37 bp):
CAAATAAAAGTCCAACAAAGTCCATCCCGGTCCAAGT
Found at i:998834 original size:37 final size:37
Alignment explanation
Indices: 998749--998838 Score: 126
Period size: 37 Copynumber: 2.4 Consensus size: 37
998739 AAATCCAATC
* * *
998749 CAAATAAAAGTCGAACAAAGTCCATCCTGGTCCAAGT
1 CAAAGAAAAGTCCAACAAAGTCCATCCCGGTCCAAGT
*
998786 CAAATAAAAGTCCAACAAAGTCCATCCCGGTCCAAGT
1 CAAAGAAAAGTCCAACAAAGTCCATCCCGGTCCAAGT
**
998823 CAAAGGCAAGTCCAAC
1 CAAAGAAAAGTCCAAC
998839 CGGTCCAGAG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.41, C:0.28, G:0.16, T:0.16
Consensus pattern (37 bp):
CAAAGAAAAGTCCAACAAAGTCCATCCCGGTCCAAGT
Found at i:999145 original size:20 final size:20
Alignment explanation
Indices: 999120--999175 Score: 112
Period size: 20 Copynumber: 2.8 Consensus size: 20
999110 GATTGTCCAA
999120 GGGTACAGATTCCCCCCAGG
1 GGGTACAGATTCCCCCCAGG
999140 GGGTACAGATTCCCCCCAGG
1 GGGTACAGATTCCCCCCAGG
999160 GGGTACAGATTCCCCC
1 GGGTACAGATTCCCCC
999176 TGCAGCTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.20, C:0.36, G:0.29, T:0.16
Consensus pattern (20 bp):
GGGTACAGATTCCCCCCAGG
Found at i:1000549 original size:19 final size:20
Alignment explanation
Indices: 1000525--1000572 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
1000515 AATGATTTTC
*
1000525 TTTTGAAAACAAAAAT-AGA
1 TTTTGAAAACAAAAATGAAA
* *
1000544 TTTTGAAAGCCAAAATGAAA
1 TTTTGAAAACAAAAATGAAA
1000564 TTTTGAAAA
1 TTTTGAAAA
1000573 AGGATTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATGAAA
Found at i:1002078 original size:20 final size:20
Alignment explanation
Indices: 1002050--1002131 Score: 110
Period size: 20 Copynumber: 4.0 Consensus size: 20
1002040 AACAGAATGT
*
1002050 CCAGGGGGTACAGATCCCCC
1 CCAGGGGGTACAGATTCCCC
* *
1002070 CCAGAGGGTACCGATTCCCC
1 CCAGGGGGTACAGATTCCCC
*
1002090 CCAGGGGGAACAGATTCCCC
1 CCAGGGGGTACAGATTCCCC
*
1002110 CCAGGGGGTACCGATATCCCC
1 CCAGGGGGTACAGAT-TCCCC
1002131 C
1 C
1002132 TGTCTAACGG
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
20 47 0.89
21 6 0.11
ACGTcount: A:0.21, C:0.39, G:0.28, T:0.12
Consensus pattern (20 bp):
CCAGGGGGTACAGATTCCCC
Found at i:1002094 original size:40 final size:41
Alignment explanation
Indices: 1002050--1002131 Score: 130
Period size: 40 Copynumber: 2.0 Consensus size: 41
1002040 AACAGAATGT
*
1002050 CCAGGGGGTACAGATCCCCCCCAGAGGGTACCGAT-TCCCC
1 CCAGGGGGAACAGATCCCCCCCAGAGGGTACCGATATCCCC
* *
1002090 CCAGGGGGAACAGATTCCCCCCAGGGGGTACCGATATCCCC
1 CCAGGGGGAACAGATCCCCCCCAGAGGGTACCGATATCCCC
1002131 C
1 C
1002132 TGTCTAACGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
40 32 0.84
41 6 0.16
ACGTcount: A:0.21, C:0.39, G:0.28, T:0.12
Consensus pattern (41 bp):
CCAGGGGGAACAGATCCCCCCCAGAGGGTACCGATATCCCC
Found at i:1003948 original size:16 final size:16
Alignment explanation
Indices: 1003927--1003960 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
1003917 ATTTATTGAC
*
1003927 TTGTTTTCTTTCATTT
1 TTGTTTTATTTCATTT
*
1003943 TTGTTTTATTTCCTTT
1 TTGTTTTATTTCATTT
1003959 TT
1 TT
1003961 TTCATTTACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.12, G:0.06, T:0.76
Consensus pattern (16 bp):
TTGTTTTATTTCATTT
Found at i:1007306 original size:32 final size:31
Alignment explanation
Indices: 1007232--1007324 Score: 150
Period size: 32 Copynumber: 3.0 Consensus size: 31
1007222 CCTAAGGACC
* *
1007232 TATCCATATGTTCCGAAGAACATAGGTAACA
1 TATCCATATGTCCCGAAGGACATAGGTAACA
*
1007263 TGTCCATATGTCCCGAAGGACATAGGTAATCA
1 TATCCATATGTCCCGAAGGACATAGGTAA-CA
1007295 TATCCATATGTCCCGAAGGACATAGGTAAC
1 TATCCATATGTCCCGAAGGACATAGGTAAC
1007325 CCTTGACTCT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
31 27 0.47
32 30 0.53
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (31 bp):
TATCCATATGTCCCGAAGGACATAGGTAACA
Found at i:1009134 original size:15 final size:14
Alignment explanation
Indices: 1009109--1009138 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
1009099 GTTCAATTGC
1009109 TGTTTTTGCAGCAT
1 TGTTTTTGCAGCAT
1009123 TGTTTCTTGCAGCAT
1 TGTTT-TTGCAGCAT
1009138 T
1 T
1009139 TAGCCACATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.13, C:0.17, G:0.20, T:0.50
Consensus pattern (14 bp):
TGTTTTTGCAGCAT
Found at i:1011523 original size:24 final size:24
Alignment explanation
Indices: 1011458--1011526 Score: 120
Period size: 24 Copynumber: 2.9 Consensus size: 24
1011448 TGTTTTGCAA
* *
1011458 AGGTGATGGAGATCTACAATGAAC
1 AGGTAATGGAGATCTACGATGAAC
1011482 AGGTAATGGAGATCTACGATGAAC
1 AGGTAATGGAGATCTACGATGAAC
1011506 AGGTAATGGAGATCTACGATG
1 AGGTAATGGAGATCTACGATG
1011527 TGTTGACGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.36, C:0.12, G:0.30, T:0.22
Consensus pattern (24 bp):
AGGTAATGGAGATCTACGATGAAC
Found at i:1011784 original size:33 final size:33
Alignment explanation
Indices: 1011740--1011839 Score: 113
Period size: 33 Copynumber: 3.2 Consensus size: 33
1011730 GACGCCGGAT
* *
1011740 TGGTGAAGGTGACCTACGATGTCGGACAGGTGA
1 TGGTGATGGTGACCTACGACGTCGGACAGGTGA
* *
1011773 TGGTGATGGTGATCTGCGACGTCGGACAGGTGA
1 TGGTGATGGTGACCTACGACGTCGGACAGGTGA
*
1011806 TGGTGA---T---CTGCGACGTCGGACAGGTGA
1 TGGTGATGGTGACCTACGACGTCGGACAGGTGA
1011833 TGGTGAT
1 TGGTGAT
1011840 CTGCGACGTC
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
27 26 0.42
30 1 0.02
33 35 0.56
ACGTcount: A:0.20, C:0.15, G:0.41, T:0.24
Consensus pattern (33 bp):
TGGTGATGGTGACCTACGACGTCGGACAGGTGA
Found at i:1011819 original size:87 final size:81
Alignment explanation
Indices: 1011666--1011896 Score: 221
Period size: 87 Copynumber: 2.8 Consensus size: 81
1011656 GATGGGAGAT
* * * * * * * ** *
1011666 GGTGATCTGCGACGCCGGATGGGAGATGGTGATCTGTGACGCCGGTTAGGAGACT-GTGATCTGC
1 GGTGACCTACGACGTCGGATAGGTGATGGTGATCTGCGACGTCGGACAGGTGA-TGGTGATCTGC
**
1011730 GACGCCGGATTGGTGAA
65 GACGCCGGACAGGTGAA
*
1011747 GGTGACCTACGATGTCGGACAGGTGATGGTGATGGTGATCTGCGACGTCGGACAGGTGATGGTGA
1 GGTGACCTACGACGTCGG--A--T-A-GGTGATGGTGATCTGCGACGTCGGACAGGTGATGGTGA
* *
1011812 TCTGCGACGTCGGACAGGTGAT
60 TCTGCGACGCCGGACAGGTGAA
* * * *
1011834 GGTGATCTGCGACGTCGGATAGTTGATGGTGATCTGCGACGTCGGACAGTTGATGGTGATCTG
1 GGTGACCTACGACGTCGGATAGGTGATGGTGATCTGCGACGTCGGACAGGTGATGGTGATCTG
1011897 TATCTATAAG
Statistics
Matches: 123, Mismatches: 20, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
81 54 0.44
82 1 0.01
83 2 0.02
85 2 0.02
86 1 0.01
87 63 0.51
ACGTcount: A:0.19, C:0.17, G:0.40, T:0.24
Consensus pattern (81 bp):
GGTGACCTACGACGTCGGATAGGTGATGGTGATCTGCGACGTCGGACAGGTGATGGTGATCTGCG
ACGCCGGACAGGTGAA
Found at i:1011839 original size:114 final size:114
Alignment explanation
Indices: 1011663--1011893 Score: 293
Period size: 114 Copynumber: 2.0 Consensus size: 114
1011653 TCGGATGGGA
** * **
1011663 GATGGTGATCTGCGACGCCGGATGGGAGATGGTGATCTGTGACGCCGGTTAGGAGACTGTGATCT
1 GATGGTGATCTGCGACGCCGGACAGGAGATGGTGATCTGCGACGCCGGACAGGAGACTGTGATCT
* *
1011728 GCGACGCCGGATTGGTGAAGGTGACCTACGATGTCGGACAGGTGATGGT
66 GCGACGCCGGATAGGTGAAGGTGACCTACGACGTCGGACAGGTGATGGT
* * * *
1011777 GATGGTGATCTGCGACGTCGGACAGGTGATGGTGATCTGCGACGTCGGACAGGTGA-TGGTGATC
1 GATGGTGATCTGCGACGCCGGACAGGAGATGGTGATCTGCGACGCCGGACAGGAGACT-GTGATC
* * * * * *
1011841 TGCGACGTCGGATAGTTGATGGTGATCTGCGACGTCGGACAGTTGATGGT
65 TGCGACGCCGGATAGGTGAAGGTGACCTACGACGTCGGACAGGTGATGGT
1011891 GAT
1 GAT
1011894 CTGTATCTAT
Statistics
Matches: 99, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
113 1 0.01
114 98 0.99
ACGTcount: A:0.19, C:0.17, G:0.40, T:0.24
Consensus pattern (114 bp):
GATGGTGATCTGCGACGCCGGACAGGAGATGGTGATCTGCGACGCCGGACAGGAGACTGTGATCT
GCGACGCCGGATAGGTGAAGGTGACCTACGACGTCGGACAGGTGATGGT
Found at i:1011884 original size:27 final size:27
Alignment explanation
Indices: 1011663--1011896 Score: 227
Period size: 27 Copynumber: 8.4 Consensus size: 27
1011653 TCGGATGGGA
* ** *
1011663 GATGGTGATCTGCGACGCCGGATGGGA
1 GATGGTGATCTGCGACGTCGGACAGGT
* * ** *
1011690 GATGGTGATCTGTGACGCCGGTTAGGA
1 GATGGTGATCTGCGACGTCGGACAGGT
* **
1011717 GACT-GTGATCTGCGACGCCGGATTGGT
1 GA-TGGTGATCTGCGACGTCGGACAGGT
* * * *
1011744 GAAGGTGACCTACGATGTCGGACAGGTGATGGT
1 GATGGTGATCTGCGACGTCGGAC-----A-GGT
1011777 GATGGTGATCTGCGACGTCGGACAGGT
1 GATGGTGATCTGCGACGTCGGACAGGT
1011804 GATGGTGATCTGCGACGTCGGACAGGT
1 GATGGTGATCTGCGACGTCGGACAGGT
* *
1011831 GATGGTGATCTGCGACGTCGGATAGTT
1 GATGGTGATCTGCGACGTCGGACAGGT
*
1011858 GATGGTGATCTGCGACGTCGGACAGTT
1 GATGGTGATCTGCGACGTCGGACAGGT
1011885 GATGGTGATCTG
1 GATGGTGATCTG
1011897 TATCTATAAG
Statistics
Matches: 178, Mismatches: 21, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
27 154 0.87
28 2 0.01
33 22 0.12
ACGTcount: A:0.19, C:0.17, G:0.40, T:0.24
Consensus pattern (27 bp):
GATGGTGATCTGCGACGTCGGACAGGT
Found at i:1014764 original size:52 final size:52
Alignment explanation
Indices: 1014686--1014791 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 52
1014676 CGTGATTCCT
1014686 TATTTAAGATGACGAGTGCTAGAAATATTCGTTAGAGAAAATGAGAGATCGG
1 TATTTAAGATGACGAGTGCTAGAAATATTCGTTAGAGAAAATGAGAGATCGG
*
1014738 TATTTAAGATGACGAGTGCTAGAAATATTCGTTAGAGAAAATGAGAGATTGG
1 TATTTAAGATGACGAGTGCTAGAAATATTCGTTAGAGAAAATGAGAGATCGG
1014790 TA
1 TA
1014792 CTTCAATTTT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.39, C:0.07, G:0.26, T:0.28
Consensus pattern (52 bp):
TATTTAAGATGACGAGTGCTAGAAATATTCGTTAGAGAAAATGAGAGATCGG
Found at i:1015986 original size:32 final size:32
Alignment explanation
Indices: 1015946--1016012 Score: 125
Period size: 32 Copynumber: 2.1 Consensus size: 32
1015936 TGTATCAAGC
1015946 CTAACTAAATCTATATCCATCGAGATGCAATA
1 CTAACTAAATCTATATCCATCGAGATGCAATA
*
1015978 CTAACTAAATTTATATCCATCGAGATGCAATA
1 CTAACTAAATCTATATCCATCGAGATGCAATA
1016010 CTA
1 CTA
1016013 TAACTAGTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (32 bp):
CTAACTAAATCTATATCCATCGAGATGCAATA
Found at i:1016387 original size:19 final size:19
Alignment explanation
Indices: 1016365--1016401 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
1016355 ATTTAGTTGC
1016365 CTAAATTATAGCCTAATTA
1 CTAAATTATAGCCTAATTA
1016384 CTAAATTATAGCCTAATT
1 CTAAATTATAGCCTAATT
1016402 GTAAGGATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.16, G:0.05, T:0.38
Consensus pattern (19 bp):
CTAAATTATAGCCTAATTA
Found at i:1017642 original size:45 final size:45
Alignment explanation
Indices: 1017576--1017665 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
1017566 CTATGCTACA
1017576 GCGTCCCAGTGGGCTCCGACGGATATTGAGTCCGCCATACACACC
1 GCGTCCCAGTGGGCTCCGACGGATATTGAGTCCGCCATACACACC
* *
1017621 GCGTCCCAGTGGGCTCTGACGGATATTGAGTCCGCCATGCACACC
1 GCGTCCCAGTGGGCTCCGACGGATATTGAGTCCGCCATACACACC
1017666 ATATCTCTCT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (45 bp):
GCGTCCCAGTGGGCTCCGACGGATATTGAGTCCGCCATACACACC
Found at i:1020892 original size:19 final size:19
Alignment explanation
Indices: 1020870--1020906 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
1020860 ATTTAGTTGC
*
1020870 CTAAATTATAGTATAATTA
1 CTAAATTATAGCATAATTA
1020889 CTAAATTATAGCATAATT
1 CTAAATTATAGCATAATT
1020907 GTTAGGATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (19 bp):
CTAAATTATAGCATAATTA
Found at i:1022361 original size:32 final size:32
Alignment explanation
Indices: 1022325--1022393 Score: 129
Period size: 32 Copynumber: 2.2 Consensus size: 32
1022315 GTTTATTTAG
*
1022325 CTTTCAAAATGACGTAATAAAAGGGTATATGA
1 CTTTCAAAATGACATAATAAAAGGGTATATGA
1022357 CTTTCAAAATGACATAATAAAAGGGTATATGA
1 CTTTCAAAATGACATAATAAAAGGGTATATGA
1022389 CTTTC
1 CTTTC
1022394 TTGACCCTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.30
Consensus pattern (32 bp):
CTTTCAAAATGACATAATAAAAGGGTATATGA
Found at i:1023565 original size:3 final size:3
Alignment explanation
Indices: 1023557--1023585 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
1023547 ATTATAAACT
1023557 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1023586 TACAAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:1023607 original size:15 final size:16
Alignment explanation
Indices: 1023561--1023601 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
1023551 TAAACTTAAT
* *
1023561 AATAATAATA-ATAAT
1 AATAATAATATACAAA
1023576 AATAATAATATACAAA
1 AATAATAATATACAAA
1023592 AATAA-AATAT
1 AATAATAATAT
1023602 TAAAAATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 15 0.65
16 8 0.35
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.29
Consensus pattern (16 bp):
AATAATAATATACAAA
Found at i:1023711 original size:16 final size:17
Alignment explanation
Indices: 1023677--1023717 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
1023667 TTATAAGGTG
* *
1023677 AAAATATTATTATTATA
1 AAAATATAATCATTATA
1023694 AAAATATAATCATT-TA
1 AAAATATAATCATTATA
1023710 AAAATATA
1 AAAATATA
1023718 TAATTTTTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATATAATCATTATA
Found at i:1026082 original size:12 final size:13
Alignment explanation
Indices: 1026055--1026079 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1026045 TTGATTGCGA
1026055 AAATAAAAAATTT
1 AAATAAAAAATTT
1026068 AAATAAAAAATT
1 AAATAAAAAATT
1026080 AAAAACCCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATAAAAAATTT
Found at i:1026514 original size:38 final size:38
Alignment explanation
Indices: 1026463--1026536 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
1026453 AATCTTTAAT
1026463 GACACGATGGAAAGCAGAACCTTTATAACCAAAGCCAG
1 GACACGATGGAAAGCAGAACCTTTATAACCAAAGCCAG
*
1026501 GACACGATGGAAAGCATAACCTTTATAACCAAAGCC
1 GACACGATGGAAAGCAGAACCTTTATAACCAAAGCC
1026537 TTTCTCCCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.42, C:0.24, G:0.19, T:0.15
Consensus pattern (38 bp):
GACACGATGGAAAGCAGAACCTTTATAACCAAAGCCAG
Found at i:1027332 original size:15 final size:15
Alignment explanation
Indices: 1027285--1027359 Score: 63
Period size: 15 Copynumber: 5.2 Consensus size: 15
1027275 TGTGGCCTAC
1027285 AAAATAA-AA-AAAT
1 AAAATAATAATAAAT
* *
1027298 AAAA-AAT-ATTATT
1 AAAATAATAATAAAT
1027311 AACAATAATAATAAAT
1 AA-AATAATAATAAAT
1027327 AAAATAA-AATAAAAT
1 AAAATAATAAT-AAAT
1027342 AAAATAAATAA-AAAT
1 AAAAT-AATAATAAAT
1027357 AAA
1 AAA
1027360 TAAATAATTA
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
12 3 0.06
13 8 0.16
14 5 0.10
15 24 0.48
16 8 0.16
17 2 0.04
ACGTcount: A:0.76, C:0.01, G:0.00, T:0.23
Consensus pattern (15 bp):
AAAATAATAATAAAT
Found at i:1027333 original size:5 final size:5
Alignment explanation
Indices: 1027314--1027363 Score: 61
Period size: 5 Copynumber: 10.2 Consensus size: 5
1027304 TATTATTAAC
1027314 AATAA TAAT-A AATAA AATAA AATAA AATAA AAT-A AATAA AA-ATA AATAA
1 AATAA -AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATA-A AATAA
1027363 A
1 A
1027364 TAATTATATG
Statistics
Matches: 40, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
4 8 0.20
5 28 0.70
6 4 0.10
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:1027364 original size:14 final size:15
Alignment explanation
Indices: 1027317--1027366 Score: 68
Period size: 15 Copynumber: 3.3 Consensus size: 15
1027307 TATTAACAAT
1027317 AATAATAAATAAAATA
1 AATAA-AAATAAAATA
1027333 AA-ATAAAATAAAATA
1 AATA-AAAATAAAATA
1027348 AATAAAAAT-AAATA
1 AATAAAAATAAAATA
1027362 AATAA
1 AATAA
1027367 TTATATGAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
14 10 0.31
15 18 0.56
16 4 0.12
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (15 bp):
AATAAAAATAAAATA
Found at i:1028177 original size:7 final size:7
Alignment explanation
Indices: 1028167--1028201 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
1028157 CTCTGATCTT
1028167 TTCTTCC
1 TTCTTCC
1028174 TTCTTCC
1 TTCTTCC
1028181 TTCTTCC
1 TTCTTCC
1028188 TTCTTCC
1 TTCTTCC
1028195 TTCTTCC
1 TTCTTCC
1028202 AATGGCTTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.00, C:0.43, G:0.00, T:0.57
Consensus pattern (7 bp):
TTCTTCC
Found at i:1035144 original size:25 final size:24
Alignment explanation
Indices: 1035116--1035164 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
1035106 GTGTATAATA
* *
1035116 ATTAAATTCATAATATTTTATATAT
1 ATTAAATTAAAAATATTTT-TATAT
*
1035141 ATTAACTTAAAAATATTTTTATAT
1 ATTAAATTAAAAATATTTTTATAT
1035165 TAACTTATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 5 0.24
25 16 0.76
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (24 bp):
ATTAAATTAAAAATATTTTTATAT
Found at i:1035166 original size:22 final size:24
Alignment explanation
Indices: 1035138--1035212 Score: 84
Period size: 22 Copynumber: 3.1 Consensus size: 24
1035128 ATATTTTATA
1035138 TATATTAACTTA-AAAATAT-TTT
1 TATATTAACTTATAAAATATATTT
*
1035160 TATATTAACTTATTAAATATATTT
1 TATATTAACTTATAAAATATATTT
*
1035184 TATTATTAACTAATTTAAAAT-TATTT
1 TA-TATTAACT--TATAAAATATATTT
1035210 TAT
1 TAT
1035213 TTTTATTTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
22 12 0.27
23 6 0.13
24 5 0.11
25 9 0.20
26 7 0.16
27 6 0.13
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (24 bp):
TATATTAACTTATAAAATATATTT
Found at i:1035175 original size:25 final size:27
Alignment explanation
Indices: 1035147--1035210 Score: 80
Period size: 25 Copynumber: 2.5 Consensus size: 27
1035137 ATATATTAAC
*
1035147 TTAAAAATATTTTTA-TATTAACTTA-
1 TTAAAAATATTTTTATTATTAACTAAT
*
1035172 TTAAATATA-TTTTATTATTAACTAAT
1 TTAAAAATATTTTTATTATTAACTAAT
*
1035198 TTAAAATTATTTT
1 TTAAAAATATTTT
1035211 ATTTTTATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 5 0.16
25 17 0.53
26 7 0.22
27 3 0.09
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (27 bp):
TTAAAAATATTTTTATTATTAACTAAT
Found at i:1036122 original size:44 final size:44
Alignment explanation
Indices: 1036059--1036148 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 44
1036049 TGCCATATAA
* *
1036059 AATTGTCCCGGAGGACCACATATATGTCACGGAGGACCTAGTAG
1 AATTGTCCCGAAGGACCACATATATGTCACGAAGGACCTAGTAG
* * *
1036103 AATTGTCCCGAATGACCACATATATGTCCCGAAGGACCTCGTAG
1 AATTGTCCCGAAGGACCACATATATGTCACGAAGGACCTAGTAG
1036147 AA
1 AA
1036149 CCCTCGACTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.21
Consensus pattern (44 bp):
AATTGTCCCGAAGGACCACATATATGTCACGAAGGACCTAGTAG
Found at i:1040471 original size:111 final size:111
Alignment explanation
Indices: 1040249--1040807 Score: 854
Period size: 111 Copynumber: 5.0 Consensus size: 111
1040239 GGTAAAATTA
* ** * * * **
1040249 AATCAGGGTAGACTTGTTCCATTATCACTTATGGAATATCAAATCTTGAAAGAGATTTGATCTGT
1 AATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGA-GGGATCTGT
* * *
1040314 TCCGCTT-CTCCTGAGGGAATATCAGATCTAGGAAAGTTGATCCATTG
65 TCCACTTCCT-CTGAGGGAATATCAGATCTGGGAAAGTTGATTCATTG
* * * *
1040361 AATCAGGGTAGACTTGTTCCACTGTCGCTCAGGGAATATAAAATCTTGAAAGAGAGGGATCTGTT
1 AATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAGGGATCTGTT
1040426 CCACTTCCTCTGAGGGAATATCAGATCTGGGAAAGTTGATTCATTG
66 CCACTTCCTCTGAGGGAATATCAGATCTGGGAAAGTTGATTCATTG
*
1040472 AATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTAAAAGAGAGGGATCTGTT
1 AATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAGGGATCTGTT
*
1040537 CCACTTCCTCTGAGGGAATATCAGATATGGGAAAGTTGATTCATTG
66 CCACTTCCTCTGAGGGAATATCAGATCTGGGAAAGTTGATTCATTG
* *
1040583 AATCAAGGTAGACTTGTTCCGCTATCACTCAGGGAATATCAAATCATG-AA-AGAGGGATCTGTT
1 AATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAGGGATCTGTT
*
1040646 CCACTTCCTCTGAGGGAATATCAGATCTGTGAAAGTTGATTCATTG
66 CCACTTCCTCTGAGGGAATATCAGATCTGGGAAAGTTGATTCATTG
1040692 AATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAGGGATCTGTT
1 AATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAGGGATCTGTT
* * * * *
1040757 CCACTTCTTCTAAGGGAATATCAGATATAGGAAAGTTGATCCATTG
66 CCACTTCCTCTGAGGGAATATCAGATCTGGGAAAGTTGATTCATTG
1040803 AATCA
1 AATCA
1040808 GGGTCGAACC
Statistics
Matches: 414, Mismatches: 30, Indels: 7
0.92 0.07 0.02
Matches are distributed among these distances:
109 103 0.25
110 4 0.01
111 256 0.62
112 51 0.12
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (111 bp):
AATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAGGGATCTGTT
CCACTTCCTCTGAGGGAATATCAGATCTGGGAAAGTTGATTCATTG
Found at i:1040715 original size:220 final size:222
Alignment explanation
Indices: 1040249--1040807 Score: 881
Period size: 220 Copynumber: 2.5 Consensus size: 222
1040239 GGTAAAATTA
* ** * * * **
1040249 AATCAGGGTAGACTTGTTCCATTATCACTTATGGAATATCAAATCTTGAAAGAGATTTGATCTGT
1 AATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGA-GGGATCTGT
* * *
1040314 TCCGCTT-CTCCTGAGGGAATATCAGATCTAGGAAAGTTGATCCATTGAATCAGGGTAGACTTGT
65 TCCACTTCCT-CTGAGGGAATATCAGATATAGGAAAGTTGATCCATTGAATCAAGGTAGACTTGT
* * *
1040378 TCCACTGTCGCTCAGGGAATATAAAATCTTGAAAGAGAGGGATCTGTTCCACTTCCTCTGAGGGA
129 TCCACTATCACTCAGGGAATATAAAATCATGAAAGAGAGGGATCTGTTCCACTTCCTCTGAGGGA
1040443 ATATCAGATCTGGGAAAGTTGATTCATTG
194 ATATCAGATCTGGGAAAGTTGATTCATTG
*
1040472 AATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTAAAAGAGAGGGATCTGTT
1 AATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAGGGATCTGTT
* *
1040537 CCACTTCCTCTGAGGGAATATCAGATATGGGAAAGTTGATTCATTGAATCAAGGTAGACTTGTTC
66 CCACTTCCTCTGAGGGAATATCAGATATAGGAAAGTTGATCCATTGAATCAAGGTAGACTTGTTC
* *
1040602 CGCTATCACTCAGGGAATATCAAATCATG-AA-AGAGGGATCTGTTCCACTTCCTCTGAGGGAAT
131 CACTATCACTCAGGGAATATAAAATCATGAAAGAGAGGGATCTGTTCCACTTCCTCTGAGGGAAT
*
1040665 ATCAGATCTGTGAAAGTTGATTCATTG
196 ATCAGATCTGGGAAAGTTGATTCATTG
1040692 AATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAGGGATCTGTT
1 AATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAGGGATCTGTT
* *
1040757 CCACTTCTTCTAAGGGAATATCAGATATAGGAAAGTTGATCCATTGAATCA
66 CCACTTCCTCTGAGGGAATATCAGATATAGGAAAGTTGATCCATTGAATCA
1040808 GGGTCGAACC
Statistics
Matches: 310, Mismatches: 25, Indels: 5
0.91 0.07 0.01
Matches are distributed among these distances:
220 169 0.55
221 2 0.01
222 89 0.29
223 50 0.16
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (222 bp):
AATCAAGGTAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAGAGAGGGATCTGTT
CCACTTCCTCTGAGGGAATATCAGATATAGGAAAGTTGATCCATTGAATCAAGGTAGACTTGTTC
CACTATCACTCAGGGAATATAAAATCATGAAAGAGAGGGATCTGTTCCACTTCCTCTGAGGGAAT
ATCAGATCTGGGAAAGTTGATTCATTG
Found at i:1042004 original size:23 final size:22
Alignment explanation
Indices: 1041975--1042022 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
1041965 CCTTCTTTTA
1041975 TTTTTCTTT-TTCTTTTTCCTCAT
1 TTTTTCTTTCTT-TTTTT-CTCAT
*
1041998 TTTTTCTTTCTTTTTTTTTCAT
1 TTTTTCTTTCTTTTTTTCTCAT
1042020 TTT
1 TTT
1042023 CTTCCATTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 7 0.30
23 14 0.61
24 2 0.09
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTTTCTTTCTTTTTTTCTCAT
Found at i:1042032 original size:14 final size:13
Alignment explanation
Indices: 1042015--1042051 Score: 58
Period size: 12 Copynumber: 2.8 Consensus size: 13
1042005 TTCTTTTTTT
1042015 TTCATTTTCTTCCA
1 TTCATTTT-TTCCA
1042029 TTCA-TTTTTCCA
1 TTCATTTTTTCCA
1042041 TTCATTTTTTC
1 TTCATTTTTTC
1042052 AGGCAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 9 0.41
13 9 0.41
14 4 0.18
ACGTcount: A:0.14, C:0.24, G:0.00, T:0.62
Consensus pattern (13 bp):
TTCATTTTTTCCA
Found at i:1049235 original size:11 final size:11
Alignment explanation
Indices: 1049221--1049250 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
1049211 TGCAATGTAG
1049221 ATGCAATATGA
1 ATGCAATATGA
*
1049232 ATGCAAGATGA
1 ATGCAATATGA
1049243 ATGCAATA
1 ATGCAATA
1049251 CAAGGTGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.23
Consensus pattern (11 bp):
ATGCAATATGA
Found at i:1060665 original size:22 final size:22
Alignment explanation
Indices: 1060640--1061176 Score: 765
Period size: 22 Copynumber: 24.4 Consensus size: 22
1060630 AAATTTTAAA
*
1060640 ATTTTAAAATATAGATTGATTT
1 ATTTTAAAATATGGATTGATTT
1060662 ATTTTAAAATATGGATTGATTT
1 ATTTTAAAATATGGATTGATTT
**
1060684 ATTTTAAAATATGGA-AAATTTT
1 ATTTTAAAATATGGATTGA-TTT
*
1060706 ATTTTAAAATATAGATTGATTT
1 ATTTTAAAATATGGATTGATTT
*
1060728 ATTTTAAAATATAGATTGATTT
1 ATTTTAAAATATGGATTGATTT
*
1060750 ATTTTAAAATATGGATTGGTTT
1 ATTTTAAAATATGGATTGATTT
1060772 ATTTTAAAATATGGATTGATTT
1 ATTTTAAAATATGGATTGATTT
1060794 ATTTTAAAATATGGATTGATTT
1 ATTTTAAAATATGGATTGATTT
* *** *
1060816 ATTTTAAAATATGAAAAAAATT
1 ATTTTAAAATATGGATTGATTT
*
1060838 ATTTTAAAATATGAATTGATTT
1 ATTTTAAAATATGGATTGATTT
* ***
1060860 ATTTTAAAATATGAAAAAATTT
1 ATTTTAAAATATGGATTGATTT
*
1060882 ATTTTAAAATATGGATTGAATT
1 ATTTTAAAATATGGATTGATTT
1060904 ATTTTAAAATATGGATTGATTT
1 ATTTTAAAATATGGATTGATTT
*
1060926 ATTTTAAAATATGGATTAATTT
1 ATTTTAAAATATGGATTGATTT
*
1060948 ATTATAAAATATGGATTGATTT
1 ATTTTAAAATATGGATTGATTT
**
1060970 ATTTTAAAATATGGA-AAATTTT
1 ATTTTAAAATATGGATTGA-TTT
*
1060992 ATTTAAAAATATGGATTGATTT
1 ATTTTAAAATATGGATTGATTT
**
1061014 ATTTTAAAATATGGA-AAATTTT
1 ATTTTAAAATATGGATTGA-TTT
1061036 ATTTTAAAATATGGATTGATTT
1 ATTTTAAAATATGGATTGATTT
***
1061058 ATTTTAAAATATGGAAAAATTT
1 ATTTTAAAATATGGATTGATTT
* *
1061080 ATTTTAAAATACGAATTGATTT
1 ATTTTAAAATATGGATTGATTT
1061102 ATTTTAAAATATGGATTGATTT
1 ATTTTAAAATATGGATTGATTT
1061124 ATTTTAAAATATGGATTGATTT
1 ATTTTAAAATATGGATTGATTT
1061146 ATTTTAAAATATGGATTGATTT
1 ATTTTAAAATATGGATTGATTT
1061168 ATTTTAAAA
1 ATTTTAAAA
1061177 AATTTATTAT
Statistics
Matches: 458, Mismatches: 51, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
21 3 0.01
22 452 0.99
23 3 0.01
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (22 bp):
ATTTTAAAATATGGATTGATTT
Found at i:1061257 original size:31 final size:31
Alignment explanation
Indices: 1061200--1061258 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
1061190 AGTTGTATGT
*
1061200 ATTATTTAAATTTCAGTATTATAAAACTAAA
1 ATTATTTAAATTTCAGTATTACAAAACTAAA
*
1061231 ATTATTTAAATTTCAGTATTGCAAAACT
1 ATTATTTAAATTTCAGTATTACAAAACT
1061259 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.42
Consensus pattern (31 bp):
ATTATTTAAATTTCAGTATTACAAAACTAAA
Found at i:1064125 original size:18 final size:18
Alignment explanation
Indices: 1064086--1064129 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
1064076 ACATTCGTAG
* *
1064086 TAATTTTATTTCTATTAG
1 TAATCTTATTTCTATTAA
1064104 TAATCTTATTTCCT-TTAA
1 TAATCTTATTT-CTATTAA
1064122 TAATCTTA
1 TAATCTTA
1064130 CATTCCCTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.30, C:0.11, G:0.02, T:0.57
Consensus pattern (18 bp):
TAATCTTATTTCTATTAA
Found at i:1066415 original size:2 final size:2
Alignment explanation
Indices: 1066408--1066436 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1066398 GGACATTTGT
1066408 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1066437 AGTTCCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1071703 original size:88 final size:86
Alignment explanation
Indices: 1071548--1071722 Score: 251
Period size: 88 Copynumber: 2.0 Consensus size: 86
1071538 TATGGTTGGA
* * * * *
1071548 GATACCCAAAAAGGAATAAACCTCGCGTCTTCAAAATATCATTAAAACCAGTTAACCCACCACTT
1 GATACCCAAAAAGGAATAAAACGCGCATCTTCAAAATAGCATTAAAACCAGTTAACCCAACACTT
*
1071613 GACATGTGAGTAAGATCTGTG
66 GACATATGAGTAAGATCTGTG
* * *
1071634 GATACCCAAAAGGGAATGAAAAACGCGCATCTTCAAATTAGCATTAAAACCAGTTAACCCAACAT
1 GATACCCAAAAAGGAAT--AAAACGCGCATCTTCAAAATAGCATTAAAACCAGTTAACCCAACAC
1071699 TTGACATATGAGTAAGATCTGTG
64 TTGACATATGAGTAAGATCTGTG
1071722 G
1 G
1071723 CTGATGCTGT
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 16 0.21
88 62 0.79
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.23
Consensus pattern (86 bp):
GATACCCAAAAAGGAATAAAACGCGCATCTTCAAAATAGCATTAAAACCAGTTAACCCAACACTT
GACATATGAGTAAGATCTGTG
Found at i:1072665 original size:47 final size:47
Alignment explanation
Indices: 1072596--1072691 Score: 174
Period size: 47 Copynumber: 2.0 Consensus size: 47
1072586 GCGTTAGAAG
*
1072596 GTTAGGGATTGGTATTCTATCAATGGAGCTGGAGACTTATATTGAAA
1 GTTAGGGATTGGTATTCTATCAATGGAACTGGAGACTTATATTGAAA
*
1072643 GTTAGGGATTGGTGTTCTATCAATGGAACTGGAGACTTATATTGAAA
1 GTTAGGGATTGGTATTCTATCAATGGAACTGGAGACTTATATTGAAA
1072690 GT
1 GT
1072692 GTGATGAAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.29, C:0.08, G:0.28, T:0.34
Consensus pattern (47 bp):
GTTAGGGATTGGTATTCTATCAATGGAACTGGAGACTTATATTGAAA
Found at i:1077758 original size:98 final size:98
Alignment explanation
Indices: 1077589--1077787 Score: 335
Period size: 98 Copynumber: 2.0 Consensus size: 98
1077579 ACCCCAGCTA
* *
1077589 TCTAGGCTGGGTTGACCATGGCATCACATAATTGCAGAAAAGACAATAAGCCAGCTATAGGAGAA
1 TCTAGGCTGGGTTGACCATAGCATCACATAATTGCAGAAAAGAAAATAAGCCAGCTATAGGAGAA
*
1077654 AAAATATTGTGATCCAAGAGTAAAAACAATGAC
66 AAAATATTGTGATACAAGAGTAAAAACAATGAC
* *
1077687 TCTAGGCTGGGTTGACCTTAGCATCACATAATTGCAGAAAAGAAAATAAGCCAGCTATAGGAGAC
1 TCTAGGCTGGGTTGACCATAGCATCACATAATTGCAGAAAAGAAAATAAGCCAGCTATAGGAGAA
* *
1077752 AAAATATTGTGATATAAGAGTTAAAACAATGAC
66 AAAATATTGTGATACAAGAGTAAAAACAATGAC
1077785 TCT
1 TCT
1077788 TTCAACATAT
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.41, C:0.16, G:0.21, T:0.23
Consensus pattern (98 bp):
TCTAGGCTGGGTTGACCATAGCATCACATAATTGCAGAAAAGAAAATAAGCCAGCTATAGGAGAA
AAAATATTGTGATACAAGAGTAAAAACAATGAC
Found at i:1078810 original size:23 final size:23
Alignment explanation
Indices: 1078766--1078819 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 23
1078756 TTGTAACATG
* * *
1078766 TTTATCTTTGCCTTTATTGCACA
1 TTTATCTCTACCTTTATGGCACA
* *
1078789 TTTATCTCTACCTTTGTGGCACG
1 TTTATCTCTACCTTTATGGCACA
1078812 TTT-TCTCT
1 TTTATCTCT
1078820 GTCTTTTGGT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 5 0.19
23 21 0.81
ACGTcount: A:0.13, C:0.24, G:0.11, T:0.52
Consensus pattern (23 bp):
TTTATCTCTACCTTTATGGCACA
Found at i:1080322 original size:14 final size:15
Alignment explanation
Indices: 1080305--1080342 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
1080295 TCAACTCGGT
*
1080305 TGAGTCAACTCA-AC
1 TGAGTCAACCCAGAC
1080319 TGAGTCAACCCAGAC
1 TGAGTCAACCCAGAC
1080334 TGAG-CAACC
1 TGAGTCAACC
1080343 GTTTGAGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.34, C:0.32, G:0.18, T:0.16
Consensus pattern (15 bp):
TGAGTCAACCCAGAC
Found at i:1082812 original size:32 final size:32
Alignment explanation
Indices: 1082744--1082815 Score: 83
Period size: 32 Copynumber: 2.2 Consensus size: 32
1082734 TAAGGTGACT
* * **
1082744 CTTGGGTAGGCTCCGAGGCCCCGAGGAACTTT
1 CTTGGGTAGGCTCCGAGACCCCAAGGAACTCC
*
1082776 CTTGGGTAGGCTCTC-AGACCCCAAGGCACTCC
1 CTTGGGTAGGCTC-CGAGACCCCAAGGAACTCC
1082808 CTTGGGTA
1 CTTGGGTA
1082816 AATCATGAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
32 33 0.97
33 1 0.03
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.22
Consensus pattern (32 bp):
CTTGGGTAGGCTCCGAGACCCCAAGGAACTCC
Found at i:1084126 original size:26 final size:26
Alignment explanation
Indices: 1084097--1084146 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1084087 GTGATTTTCA
1084097 TTTAATTAATTTATAACTATATAATT
1 TTTAATTAATTTATAACTATATAATT
*
1084123 TTTAATTAATTTATAATTATATAA
1 TTTAATTAATTTATAACTATATAA
1084147 ATTCGTAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (26 bp):
TTTAATTAATTTATAACTATATAATT
Found at i:1094178 original size:11 final size:11
Alignment explanation
Indices: 1094162--1094271 Score: 81
Period size: 11 Copynumber: 10.3 Consensus size: 11
1094152 TTATATTGTA
1094162 AAATAAAAAAT
1 AAATAAAAAAT
1094173 AAAT-AAAAAT
1 AAATAAAAAAT
*
1094183 AAA-ATAATAAT
1 AAATA-AAAAAT
1094194 AATATAAAAAAT
1 AA-ATAAAAAAT
* * *
1094206 TAATATATAAT
1 AAATAAAAAAT
1094217 AAA-AAATAAAT
1 AAATAAA-AAAT
*
1094228 AGATAAAAAA-
1 AAATAAAAAAT
*
1094238 AGATAAATAAA-
1 AAATAAA-AAAT
1094249 AAATAAAAAA-
1 AAATAAAAAAT
1094259 AAA-AAAAAAT
1 AAATAAAAAAT
1094269 AAA
1 AAA
1094272 AAGTTAAATT
Statistics
Matches: 81, Mismatches: 10, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
9 6 0.07
10 27 0.33
11 37 0.46
12 10 0.12
13 1 0.01
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (11 bp):
AAATAAAAAAT
Found at i:1094201 original size:33 final size:34
Alignment explanation
Indices: 1094164--1094258 Score: 113
Period size: 33 Copynumber: 2.7 Consensus size: 34
1094154 ATATTGTAAA
1094164 ATAAAAAATAAATAAAAATAAAATAAT-AATA-AT
1 ATAAAAAATAAATAAAAATAAAA-AATAAATAGAT
* *
1094197 ATAAAAAATTAATATATAATAAAAAATAAATAGAT
1 ATAAAAAATAAATA-AAAATAAAAAATAAATAGAT
*
1094232 AAAAAAAGATAAATAAAAAATAAAAAA
1 ATAAAAA-ATAAAT-AAAAATAAAAAA
1094259 AAAAAAAAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
33 16 0.31
34 12 0.23
35 8 0.15
36 15 0.29
37 1 0.02
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (34 bp):
ATAAAAAATAAATAAAAATAAAAAATAAATAGAT
Found at i:1094204 original size:18 final size:17
Alignment explanation
Indices: 1094166--1094273 Score: 71
Period size: 18 Copynumber: 6.2 Consensus size: 17
1094156 ATTGTAAAAT
*
1094166 AAAAAATAAATAAAAATA
1 AAAAAAT-AATAATAATA
*
1094184 AAATAATAATAAT-ATA
1 AAAAAATAATAATAATA
*
1094200 AAAAATTAATATATAAT-
1 AAAAAATAATA-ATAATA
1094217 AAAAAATAAATAGATAA-A
1 AAAAAAT-AATA-ATAATA
* *
1094235 AAAAGATAAATAAAAAATA
1 AAAAAAT-AAT-AATAATA
* *
1094254 AAAAAA-AAAAAAAATA
1 AAAAAATAATAATAATA
1094270 AAAA
1 AAAA
1094274 GTTAAATTTT
Statistics
Matches: 74, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
16 23 0.31
17 15 0.20
18 29 0.39
19 7 0.09
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (17 bp):
AAAAAATAATAATAATA
Found at i:1094205 original size:29 final size:27
Alignment explanation
Indices: 1094173--1094270 Score: 76
Period size: 27 Copynumber: 3.6 Consensus size: 27
1094163 AATAAAAAAT
1094173 AAATAAAAATAAAATAATAATAATATAAA
1 AAATAAAAA-AAAATAATAA-AATATAAA
* * * *
1094202 AAATTAATATATAATAA-AAAATA-AAT
1 AAA-TAAAAAAAAATAATAAAATATAAA
* * *
1094228 AGATAAAAAAAGATAAATAAAAAATAAA
1 AAATAAAAAAAAAT-AATAAAATATAAA
1094256 AAA-AAAAAAAAATAA
1 AAATAAAAAAAAATAA
1094271 AAAGTTAAAT
Statistics
Matches: 52, Mismatches: 13, Indels: 11
0.68 0.17 0.14
Matches are distributed among these distances:
25 7 0.13
26 8 0.15
27 18 0.35
28 6 0.12
29 9 0.17
30 4 0.08
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (27 bp):
AAATAAAAAAAAATAATAAAATATAAA
Found at i:1094235 original size:14 final size:15
Alignment explanation
Indices: 1094162--1094271 Score: 104
Period size: 15 Copynumber: 7.2 Consensus size: 15
1094152 TTATATTGTA
1094162 AAATAAAAAATAAAT
1 AAATAAAAAATAAAT
1094177 AAA-AATAAAATAATAAT
1 AAATAA-AAAAT-A-AAT
1094194 AATATAAAAAATTAATAT
1 AA-ATAAAAAA-TAA-AT
1094212 ATAATAAAAAATAAAT
1 A-AATAAAAAATAAAT
* *
1094228 AGATAAAAAA-AGAT
1 AAATAAAAAATAAAT
1094242 AAATAAAAAATAAA-
1 AAATAAAAAATAAAT
1094256 AAA-AAAAAA-AAAT
1 AAATAAAAAATAAAT
1094269 AAA
1 AAA
1094272 AAGTTAAATT
Statistics
Matches: 81, Mismatches: 4, Indels: 22
0.76 0.04 0.21
Matches are distributed among these distances:
12 3 0.04
13 9 0.11
14 17 0.21
15 18 0.22
16 4 0.05
17 9 0.11
18 17 0.21
19 4 0.05
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (15 bp):
AAATAAAAAATAAAT
Found at i:1095436 original size:11 final size:11
Alignment explanation
Indices: 1095420--1095464 Score: 56
Period size: 11 Copynumber: 4.0 Consensus size: 11
1095410 CATGGAAACG
1095420 AAAAAAA-AAA
1 AAAAAAATAAA
1095430 AAAAAAATAAA
1 AAAAAAATAAA
*
1095441 AAATAAATAAA
1 AAAAAAATAAA
1095452 AACGAAAAATAAA
1 AA--AAAAATAAA
1095465 TAATAAATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
10 7 0.23
11 15 0.50
13 8 0.27
ACGTcount: A:0.87, C:0.02, G:0.02, T:0.09
Consensus pattern (11 bp):
AAAAAAATAAA
Found at i:1095575 original size:38 final size:38
Alignment explanation
Indices: 1095519--1095787 Score: 251
Period size: 38 Copynumber: 7.6 Consensus size: 38
1095509 TTCAAAAACA
1095519 TTTTAAAAACTATATATTATATATATGTTTTCAAAATG
1 TTTTAAAAACTATATATTATATATATGTTTTCAAAATG
*
1095557 TTTTTAAAACTATATATTATATATATGTTTTCAAAATG
1 TTTTAAAAACTATATATTATATATATGTTTTCAAAATG
*
1095595 TTTTCAAAACTATATA--ATATATATGTTTTC------
1 TTTTAAAAACTATATATTATATATATGTTTTCAAAATG
1095625 ----AAAAACTATATATTATATATA--TTTTCAAAAATG
1 TTTTAAAAACTATATATTATATATATGTTTTC-AAAATG
* *
1095658 TTTCAAAAACTATATA-T-TATATATGTTTTC--AATT
1 TTTTAAAAACTATATATTATATATATGTTTTCAAAATG
* *
1095692 TTTTTAAAACT-T-TA-TA-ATATATATTTTCAAAATG
1 TTTTAAAAACTATATATTATATATATGTTTTCAAAATG
* * *
1095726 TTTTCAAAACTATATAATATATATAT-TTTTGAAAATCG
1 TTTTAAAAACTATATATTATATATATGTTTTCAAAAT-G
*
1095764 CTTTCTAAAAATTATATATTATAT
1 -TTT-TAAAAACTATATATTATAT
1095788 TTTTCCAAAA
Statistics
Matches: 193, Mismatches: 13, Indels: 48
0.76 0.05 0.19
Matches are distributed among these distances:
26 16 0.08
28 7 0.04
32 14 0.07
33 1 0.01
34 25 0.13
35 7 0.04
36 17 0.09
37 28 0.15
38 59 0.31
39 3 0.02
40 16 0.08
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.48
Consensus pattern (38 bp):
TTTTAAAAACTATATATTATATATATGTTTTCAAAATG
Found at i:1095636 original size:26 final size:26
Alignment explanation
Indices: 1095592--1095655 Score: 103
Period size: 26 Copynumber: 2.5 Consensus size: 26
1095582 TGTTTTCAAA
1095592 ATGTTTTC-AAAACTATATAATATAT
1 ATGTTTTCAAAAACTATATAATATAT
*
1095617 ATGTTTTCAAAAACTATATATTATAT
1 ATGTTTTCAAAAACTATATAATATAT
*
1095643 ATATTTTCAAAAA
1 ATGTTTTCAAAAA
1095656 TGTTTCAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
25 8 0.22
26 28 0.78
ACGTcount: A:0.45, C:0.08, G:0.03, T:0.44
Consensus pattern (26 bp):
ATGTTTTCAAAAACTATATAATATAT
Found at i:1095662 original size:37 final size:37
Alignment explanation
Indices: 1095621--1095787 Score: 168
Period size: 37 Copynumber: 4.6 Consensus size: 37
1095611 ATATATATGT
1095621 TTTCAAAAACTATATATTATATATATTTTCAAAAATG-
1 TTTCAAAAACTATATATTATATATATTTTC-AAAATGC
* *
1095658 TTTCAAAAACTATATATTATATATGTTTTC--AAT-T
1 TTTCAAAAACTATATATTATATATATTTTCAAAATGC
** * *
1095692 TTTTTAAAACT-T-TATAATATATATTTTCAAAATGT
1 TTTCAAAAACTATATATTATATATATTTTCAAAATGC
* *
1095727 TTTC-AAAACTATATAATATATATATTTTTGAAAATCGC
1 TTTCAAAAACTATATATTATATATA-TTTTCAAAAT-GC
*
1095765 TTTCTAAAAATTATATATTATAT
1 TTTC-AAAAACTATATATTATAT
1095788 TTTTCCAAAA
Statistics
Matches: 108, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
32 14 0.13
33 1 0.01
34 21 0.19
35 5 0.05
36 9 0.08
37 38 0.35
38 5 0.05
40 15 0.14
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (37 bp):
TTTCAAAAACTATATATTATATATATTTTCAAAATGC
Found at i:1095713 original size:34 final size:34
Alignment explanation
Indices: 1095617--1095754 Score: 138
Period size: 34 Copynumber: 3.9 Consensus size: 34
1095607 TATAATATAT
*
1095617 ATGTTTTCAAAAACTATATATTATATATATTTTCAAAA
1 ATGTTTTC-AAAACTATATAATATATAT-TTTTC--AA
*
1095655 ATG-TTTCAAAAACTATATATTATATATGTTTTC-A
1 ATGTTTTC-AAAACTATATAATATATAT-TTTTCAA
* * *
1095689 ATTTTTTTAAAACTTTATAATATATA-TTTTCAAA
1 ATGTTTTCAAAACTATATAATATATATTTTTC-AA
1095723 ATGTTTTCAAAACTATATAATATATATATTTT
1 ATGTTTTCAAAACTATATAATATATAT-TTTT
1095755 TGAAAATCGC
Statistics
Matches: 87, Mismatches: 8, Indels: 12
0.81 0.07 0.11
Matches are distributed among these distances:
32 5 0.06
34 43 0.49
35 3 0.03
36 4 0.05
37 29 0.33
38 3 0.03
ACGTcount: A:0.41, C:0.07, G:0.03, T:0.49
Consensus pattern (34 bp):
ATGTTTTCAAAACTATATAATATATATTTTTCAA
Found at i:1097118 original size:85 final size:85
Alignment explanation
Indices: 1096868--1097171 Score: 305
Period size: 85 Copynumber: 3.6 Consensus size: 85
1096858 GTCATCGAGT
* * * *
1096868 TGAATGGAATCAAACTCGACA-ATTTTTGTTGATAGATAACCCTTCTCTCCTTAAGCTATGTTTG
1 TGAATGTAATCAAACTCGA-AGATTTTTGTTGACAGATAACCCTTCTCGCCTTAAGCTATG-CTG
*
1096932 TAAATTTGATATGCCCTTGAGT
64 TAAATTTGATATGCCCTTGAGC
* * * *
1096954 TGAATGTAATCAAACTCGAAG---GTTG-TGACATATAGCCCTTCTCGCCTTGAGCTATGCTGTA
1 TGAATGTAATCAAACTCGAAGATTTTTGTTGACAGATAACCCTTCTCGCCTTAAGCTATGCTGTA
1097015 AATTTGATATGCCCTTGAGC
66 AATTTGATATGCCCTTGAGC
* * * * *
1097035 TGAATGTAATCGAACTCGAAGATTTTTATTGACAGATAACCTTTCTCACCTTAAGTTATGCTGTA
1 TGAATGTAATCAAACTCGAAGATTTTTGTTGACAGATAACCCTTCTCGCCTTAAGCTATGCTGTA
* * * *
1097100 AACTTGTTATGTCTTTGAGC
66 AATTTGATATGCCCTTGAGC
* * * * * * * *
1097120 TGAATAG-AATCGAACTCAAAGGTTTCTGTTGATATATAACCTTTATCGCCTT
1 TGAAT-GTAATCAAACTCGAAGATTTTTGTTGACAGATAACCCTTCTCGCCTT
1097172 GAGTTATGTT
Statistics
Matches: 182, Mismatches: 30, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
81 43 0.24
82 26 0.14
83 3 0.02
84 2 0.01
85 89 0.49
86 19 0.10
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (85 bp):
TGAATGTAATCAAACTCGAAGATTTTTGTTGACAGATAACCCTTCTCGCCTTAAGCTATGCTGTA
AATTTGATATGCCCTTGAGC
Found at i:1097418 original size:427 final size:425
Alignment explanation
Indices: 1096604--1097444 Score: 1185
Period size: 427 Copynumber: 2.0 Consensus size: 425
1096594 GATAGTCATC
* * * ** * *
1096604 GAGCTGAATCGAATCGAACTTGACAATTTTTGTTGACAAATAGCCTTTCTTGCGTTGAGCTATGC
1 GAGCTGAATCGAATCGAACTCGACAATTTTTATTGACAAATAACCTTTCTCACCTTAAGCTATGC
1096669 TGTAAACTTGTTATGTCTTTGAACTGAATAGAATCGAACTCAAAGGTTTCTGTTAACAGATAACC
66 TGTAAACTTGTTATGTCTTTGAACTGAATAGAATCGAACTCAAAGGTTTCTGTTAACAGATAACC
* *
1096734 CTCATCGCCCTTAGTTATGTTATACTAAGCTGAGAGATTGCCCCTGATCTTCCTCTTGACTTAAA
131 CTCATCGCCCTTAGTTATGTTATACTAAGCTGAGAGATTACCCCAGATCTTCCTCTTGACTTAAA
* * * *
1096799 AACCTTGGTTTAAACTTCAACCGGAGAGTAGTTCCTCGTTACTACCATGCGGTTGATATGTCATC
196 AACCTTGGTTAAAACTTCAACCGGAAAGTAGTTCCTCGCTACTACCATGCGATTGATATGTCATC
* ** * *
1096864 GAGTTGAATGGAATCAAACTCGACAATTTTTGTTGATAGATAACCCTTCTCTCCTTAAGCTATGT
261 GAGTTAAATGGAATC-AACTCGA-AACGTTTGTTGACAGATAACCCTTCTCGCCTTAAGCTATGT
* *
1096929 TTGTAAATTTGATATGCCCTTGAGTTGAATGTAATCAAACTCGAAGGTTGTGACATATAGCCCTT
324 TTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCAAACTCGAAGGTTGTGACAGATAGCCCTT
*
1096994 CTCGCCTTGAGCTATGCTGTAAATTTGATATGCCCTT
389 CTCACCTTGAGCTATGCTGTAAATTTGATATGCCCTT
* *
1097031 GAGCTGAAT-GTAATCGAACTCGA-AGATTTTTATTGACAGATAACCTTTCTCACCTTAAGTTAT
1 GAGCTGAATCG-AATCGAACTCGACA-ATTTTTATTGACAAATAACCTTTCTCACCTTAAGCTAT
* * * *
1097094 GCTGTAAACTTGTTATGTCTTTGAGCTGAATAGAATCGAACTCAAAGGTTTCTGTTGATATATAA
64 GCTGTAAACTTGTTATGTCTTTGAACTGAATAGAATCGAACTCAAAGGTTTCTGTTAACAGATAA
* * *
1097159 CCTTTATCG-CCTTGAGTTATGTTGTACTAAGCTGAGAGATTACCCCAGATCTTCCTCTTGACTT
129 CCCTCATCGCCCTT-AGTTATGTTATACTAAGCTGAGAGATTACCCCAGATCTTCCTCTTGACTT
* * *
1097223 AAAAACCTTGGTTAAAACTTCAACCGGAAAGTAGTTCCTCGCTGCTACCATGTGATTGATATTTC
193 AAAAACCTTGGTTAAAACTTCAACCGGAAAGTAGTTCCTCGCTACTACCATGCGATTGATATGTC
* * *
1097288 ATCGA-TCTAAATGGAATC-GCTCG-AACGTTTGTTGACAGATAGCCCTTCTCGCCTTGAGCTAT
258 ATCGAGT-TAAATGGAATCAACTCGAAACGTTTGTTGACAGATAACCCTTCTCGCCTTAAGCTAT
*
1097350 G-TTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCGAACTCGAAGGTTTTTTGCTGGA-AGA
322 GTTTGTAAATTTGATATGCCCTTGAGCTGAATGTAATCAAACTCGAAGG----TTG-T-GACAGA
1097413 TAGCCCTTCTCACCTTGAGCTATGCTGTAAAT
381 TAGCCCTTCTCACCTTGAGCTATGCTGTAAAT
1097445 AGTCTCTTTA
Statistics
Matches: 367, Mismatches: 37, Indels: 20
0.87 0.09 0.05
Matches are distributed among these distances:
422 45 0.12
423 34 0.09
425 4 0.01
426 10 0.03
427 272 0.74
428 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (425 bp):
GAGCTGAATCGAATCGAACTCGACAATTTTTATTGACAAATAACCTTTCTCACCTTAAGCTATGC
TGTAAACTTGTTATGTCTTTGAACTGAATAGAATCGAACTCAAAGGTTTCTGTTAACAGATAACC
CTCATCGCCCTTAGTTATGTTATACTAAGCTGAGAGATTACCCCAGATCTTCCTCTTGACTTAAA
AACCTTGGTTAAAACTTCAACCGGAAAGTAGTTCCTCGCTACTACCATGCGATTGATATGTCATC
GAGTTAAATGGAATCAACTCGAAACGTTTGTTGACAGATAACCCTTCTCGCCTTAAGCTATGTTT
GTAAATTTGATATGCCCTTGAGCTGAATGTAATCAAACTCGAAGGTTGTGACAGATAGCCCTTCT
CACCTTGAGCTATGCTGTAAATTTGATATGCCCTT
Found at i:1098726 original size:99 final size:98
Alignment explanation
Indices: 1098554--1098750 Score: 306
Period size: 99 Copynumber: 2.0 Consensus size: 98
1098544 GGGACATCTC
* * *
1098554 ATATTATAATCACCTTTATTAGGCTAGCTCAATCTTATCCATAAAGCCGGGGTTTAAAACCAATT
1 ATATTATAATCACCTTGATCAGGCTAGCTCAATCTTATCCATAAAGCCGGGGTTT-AAACAAATT
* *
1098619 GCTTTAGAGGGACATCTCAAGCTTTATTGTATAG
65 GCTCTAGAGGGACAGCTCAAGCTTTATTGTATAG
*
1098653 ATATTATAATCACCTTGATCAGGCTAGCTGAATCTTATCCATAAAGCCAGGGTGTTT-AACAAAT
1 ATATTATAATCACCTTGATCAGGCTAGCTCAATCTTATCCATAAAGCC-GGG-GTTTAAACAAAT
1098717 TGCTCTAGAGGGACAGCTCAAGCTTTATTGTATA
64 TGCTCTAGAGGGACAGCTCAAGCTTTATTGTATA
1098751 TATAATATTA
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
99 83 0.92
100 3 0.03
101 4 0.04
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.33
Consensus pattern (98 bp):
ATATTATAATCACCTTGATCAGGCTAGCTCAATCTTATCCATAAAGCCGGGGTTTAAACAAATTG
CTCTAGAGGGACAGCTCAAGCTTTATTGTATAG
Found at i:1100703 original size:39 final size:37
Alignment explanation
Indices: 1100621--1100914 Score: 227
Period size: 39 Copynumber: 7.9 Consensus size: 37
1100611 TTCAAAAACA
*
1100621 TTTTAAAAACTATATATTATATATATATTTTTCAAAATG
1 TTTTTAAAACTATATA-T-TATATATATTTTTCAAAATG
1100660 TTTTTAGAAACTATATATTATATATATGTTTTCAAAATG
1 TTTTTA-AAACTATATATTATATATAT-TTTTCAAAATG
1100699 TTTTTAAAAACTATATATTATATATATGTTTTCAAAAATG
1 TTTTT-AAAACTATATATTATATATAT-TTTTC-AAAATG
* ** * *
1100739 TTTTCAATTTCTATATATTATATATA-TTTTAAAAATA
1 TTTTTAA-AACTATATATTATATATATTTTTCAAAATG
* *
1100776 TTTTCAATATA-TATATATATATATTATATTTTTC-AAATT
1 TTTTTAA-A-ACTATATAT-TATA-TATATTTTTCAAAATG
* * **
1100815 TTTTTGAAAACTATATA-T-CATAT-GTTTTCAAAAAA
1 TTTTT-AAAACTATATATTATATATATTTTTCAAAATG
* * * *
1100850 ATTTCAAAAC--TATA-TATACATA-TTTTAAAAATG
1 TTTTTAAAACTATATATTATATATATTTTTCAAAATG
*
1100883 TTTTCAAAACTATATA--ATATATA-TTTTCAAAA
1 TTTTTAAAACTATATATTATATATATTTTTCAAAA
1100915 ACCACTTTCT
Statistics
Matches: 214, Mismatches: 25, Indels: 37
0.78 0.09 0.13
Matches are distributed among these distances:
32 5 0.02
33 20 0.09
34 24 0.11
35 13 0.06
36 1 0.00
37 21 0.10
38 18 0.08
39 69 0.32
40 43 0.20
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.48
Consensus pattern (37 bp):
TTTTTAAAACTATATATTATATATATTTTTCAAAATG
Found at i:1100723 original size:79 final size:76
Alignment explanation
Indices: 1100609--1100940 Score: 255
Period size: 79 Copynumber: 4.4 Consensus size: 76
1100599 TGTTTTCAAA
* *
1100609 ATTTCAAAAACATTTTAAAAACTATATATTATATATATATTTTTCAAAATGTTTTTAGAAACTAT
1 ATTTTAAAAATATTTTAAAAACTATATATTATATATATATTTTTCAAAATGTTTTTAGAAACTAT
1100674 ATATTATATAT
66 ATATTATATAT
* * * * *
1100685 ATGTTTTCAAAATGTTTTTAAAAACTATATATTATATATAT-GTTTTCAAAAATGTTTTCA-ATT
1 A--TTTTAAAAAT-ATTTTAAAAACTATATATTATATATATATTTTTC-AAAATGTTTTTAGA-A
*
1100748 TCTATATATTATATAT
61 ACTATATATTATATAT
* * *
1100764 ATTTTAAAAATATTTTCAATA-TATATATATATATATTATATTTTTC-AAAT-TTTTTTGAAAAC
1 ATTTTAAAAATATTTTAAAAACTATATAT-TATATA-TATATTTTTCAAAATGTTTTTAG-AAAC
* *
1100826 TATATATCATATGT
63 TATATATTATATAT
* * * * * *
1100840 -TTTCAAAAA-AATTTCAAAAC----TA-TATATACATA-TTTTAAAAATGTTTTCA-AAACTAT
1 ATTTTAAAAATATTTTAAAAACTATATATTATATATATATTTTTCAAAATGTTTTTAGAAACTAT
1100896 ATA--ATATAT
66 ATATTATATAT
* *
1100905 ATTTTCAAAAACCACTTTCTAAAAATTATATATTAT
1 ATTTT-AAAAA-TA-TTT-TAAAAACTATATATTAT
1100941 TTTTCCAAAA
Statistics
Matches: 201, Mismatches: 31, Indels: 48
0.72 0.11 0.17
Matches are distributed among these distances:
65 5 0.02
66 3 0.01
67 19 0.09
68 7 0.03
69 11 0.05
70 2 0.01
71 7 0.03
74 8 0.04
75 21 0.10
76 34 0.17
77 13 0.06
78 18 0.09
79 53 0.26
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.47
Consensus pattern (76 bp):
ATTTTAAAAATATTTTAAAAACTATATATTATATATATATTTTTCAAAATGTTTTTAGAAACTAT
ATATTATATAT
Found at i:1100803 original size:11 final size:11
Alignment explanation
Indices: 1100750--1100804 Score: 51
Period size: 11 Copynumber: 5.1 Consensus size: 11
1100740 TTTCAATTTC
1100750 TATATATTATA
1 TATATATTATA
* *
1100761 TATATTTTAAA
1 TATATATTATA
* *
1100772 AATATTTTCA-A
1 TATATATT-ATA
1100783 TATATA-TATA
1 TATATATTATA
1100793 TATATATTATA
1 TATATATTATA
1100804 T
1 T
1100805 TTTTCAAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
9 1 0.03
10 8 0.22
11 26 0.72
12 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (11 bp):
TATATATTATA
Found at i:1100859 original size:34 final size:34
Alignment explanation
Indices: 1100793--1100969 Score: 116
Period size: 33 Copynumber: 5.1 Consensus size: 34
1100783 TATATATATA
* * ** *
1100793 TATATATTATATTTTTC-AAATTTTTTTGAAAAC
1 TATATATCATATTTTTCAAAAATAATTTCAAAAC
1100826 TATATATCATATGTTTTCAAAAA-AATTTCAAAAC
1 TATATATCATAT-TTTTCAAAAATAATTTCAAAAC
**
1100860 TATATATACATA-TTTT-AAAAATGTTTTCAAAAC
1 TATATAT-CATATTTTTCAAAAATAATTTCAAAAC
* * *
1100893 TATATAAT-ATATATTTTCAAAAACCACTTTCTAAAAA
1 TATAT-ATCATAT-TTTTCAAAAA-TAATTTC-AAAAC
* *
1100930 T-TATAT-ATTATTTTTCCAAAATATATTTTCAAAAT
1 TATATATCA-TATTTTT-CAAAA-ATAATTTCAAAAC
1100965 TATAT
1 TATAT
1100970 TACATTAATA
Statistics
Matches: 116, Mismatches: 14, Indels: 25
0.75 0.09 0.16
Matches are distributed among these distances:
32 8 0.07
33 29 0.25
34 26 0.22
35 24 0.21
36 23 0.20
37 6 0.05
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.45
Consensus pattern (34 bp):
TATATATCATATTTTTCAAAAATAATTTCAAAAC
Found at i:1101029 original size:14 final size:14
Alignment explanation
Indices: 1101006--1101032 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1100996 TAAAAAATAT
1101006 AAAAAAAAACAAAA
1 AAAAAAAAACAAAA
1101020 AAAAAAAAACAAA
1 AAAAAAAAACAAA
1101033 TTTGGACGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAAACAAAA
Found at i:1108304 original size:19 final size:21
Alignment explanation
Indices: 1108267--1108309 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 21
1108257 CACTCACTAT
*
1108267 TGTATTACTTGCATCGA-TTG
1 TGTATTACTTGCATAGATTTG
*
1108287 TGTA-TACTTGTATAGATTTG
1 TGTATTACTTGCATAGATTTG
1108307 TGT
1 TGT
1108310 GCCATATCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.21, C:0.09, G:0.21, T:0.49
Consensus pattern (21 bp):
TGTATTACTTGCATAGATTTG
Found at i:1109892 original size:2 final size:2
Alignment explanation
Indices: 1109885--1109912 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1109875 ACTAAAACAA
1109885 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1109913 TAAATAGAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1114470 original size:20 final size:20
Alignment explanation
Indices: 1114430--1114470 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
1114420 TTTGATCATG
*
1114430 ATATTTCAATATGCATGTAT
1 ATATTTCAATATGCATATAT
1114450 ATATTTC-ATATGACATATAT
1 ATATTTCAATATG-CATATAT
1114470 A
1 A
1114471 ACCAAGTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.39, C:0.10, G:0.07, T:0.44
Consensus pattern (20 bp):
ATATTTCAATATGCATATAT
Found at i:1114669 original size:22 final size:19
Alignment explanation
Indices: 1114643--1114700 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 19
1114633 TCAGTATTCA
1114643 TCCCGAAGGACTGCTATATATG
1 TCCCGAAGGACT-C-A-ATATG
* *
1114665 TCCCGTAGGAC-CACTATG
1 TCCCGAAGGACTCAATATG
1114683 TCCCGAAGGACTACAATA
1 TCCCGAAGGACT-CAATA
1114701 CCCTCGACTC
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
18 14 0.47
19 1 0.03
20 5 0.17
22 10 0.33
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (19 bp):
TCCCGAAGGACTCAATATG
Found at i:1114999 original size:14 final size:15
Alignment explanation
Indices: 1114972--1115000 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
1114962 ATATCATATA
1114972 TCTTATGTTTTATGC
1 TCTTATGTTTTATGC
1114987 TCTTATG-TTTATGC
1 TCTTATGTTTTATGC
1115001 ATATCATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.59
Consensus pattern (15 bp):
TCTTATGTTTTATGC
Found at i:1121313 original size:18 final size:20
Alignment explanation
Indices: 1121275--1121315 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
1121265 TTTGATCATG
*
1121275 ATATTTCAATATGCATGTAT
1 ATATTTCAATATGCATATAT
1121295 ATATTTC-ATATG-ATATAT
1 ATATTTCAATATGCATATAT
1121313 ATA
1 ATA
1121316 ACCAAGTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 5 0.25
20 7 0.35
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (20 bp):
ATATTTCAATATGCATATAT
Found at i:1121856 original size:14 final size:15
Alignment explanation
Indices: 1121829--1121857 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
1121819 ATATCATATA
1121829 TCTTATGTTTTATGC
1 TCTTATGTTTTATGC
1121844 TCTTATG-TTTATGC
1 TCTTATGTTTTATGC
1121858 ATATCATGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.59
Consensus pattern (15 bp):
TCTTATGTTTTATGC
Found at i:1128730 original size:49 final size:51
Alignment explanation
Indices: 1128677--1128802 Score: 220
Period size: 49 Copynumber: 2.5 Consensus size: 51
1128667 TGTTATAAAA
*
1128677 ATATTAGATTTATAATAAAAATAATAGAAAACAACT-AAA-AAATAAAATT
1 ATATTAGATTTATAATAAAAATAATAGAAAACAACTAAAATAAATAAAATG
*
1128726 ATATTAGATTTATAATAAAAATAATAGAAAACAACTAAAATAAATGAAATG
1 ATATTAGATTTATAATAAAAATAATAGAAAACAACTAAAATAAATAAAATG
1128777 ATATTAGATTTATAATAAAAATAATA
1 ATATTAGATTTATAATAAAAATAATA
1128803 TAAAGTTTAC
Statistics
Matches: 73, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
49 36 0.49
50 3 0.04
51 34 0.47
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.30
Consensus pattern (51 bp):
ATATTAGATTTATAATAAAAATAATAGAAAACAACTAAAATAAATAAAATG
Found at i:1130378 original size:31 final size:31
Alignment explanation
Indices: 1130340--1130399 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
1130330 CATAGAGTTT
*
1130340 AAAAACATCCAATTACGTATCAAAATTATCG
1 AAAAACATCCAATAACGTATCAAAATTATCG
1130371 AAAAACATCCAATAACGTATCAAAATTAT
1 AAAAACATCCAATAACGTATCAAAATTAT
1130400 TGAACTGTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.52, C:0.18, G:0.05, T:0.25
Consensus pattern (31 bp):
AAAAACATCCAATAACGTATCAAAATTATCG
Found at i:1131932 original size:21 final size:21
Alignment explanation
Indices: 1131908--1131947 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
1131898 CACAGTGTAG
*
1131908 ATGAAAGCATGTCTAACATGT
1 ATGAAAGCATGTCCAACATGT
*
1131929 ATGAGAGCATGTCCAACAT
1 ATGAAAGCATGTCCAACAT
1131948 TTGGTATCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (21 bp):
ATGAAAGCATGTCCAACATGT
Found at i:1145191 original size:49 final size:51
Alignment explanation
Indices: 1145113--1145223 Score: 190
Period size: 49 Copynumber: 2.2 Consensus size: 51
1145103 GTATTTATAG
* *
1145113 GAAGATGGGAGGGGGAGACGAGTGGTAATTAATGTGGGAGACGGATAG-TT
1 GAAGATGGGAGGGGGAGACGAGTGATAATTAATGTGGGAGACAGATAGTTT
1145163 -AAGATGGGAGGGGGAGACGAGTGATAATTAATGTGGGAGACAGATAGTTT
1 GAAGATGGGAGGGGGAGACGAGTGATAATTAATGTGGGAGACAGATAGTTT
1145213 GAAGATGGGAG
1 GAAGATGGGAG
1145224 CAGATCATGA
Statistics
Matches: 57, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
49 45 0.79
50 2 0.04
51 10 0.18
ACGTcount: A:0.32, C:0.04, G:0.44, T:0.20
Consensus pattern (51 bp):
GAAGATGGGAGGGGGAGACGAGTGATAATTAATGTGGGAGACAGATAGTTT
Found at i:1145193 original size:29 final size:29
Alignment explanation
Indices: 1145114--1145201 Score: 70
Period size: 29 Copynumber: 3.3 Consensus size: 29
1145104 TATTTATAGG
*
1145114 AAGATGGGAGGGGGAGACGAGTGGTAATT
1 AAGATGGGAGGGGGAGACGAGTGATAATT
* *
1145143 -A-AT----GTGGGAGAC--G-GATAGTT
1 AAGATGGGAGGGGGAGACGAGTGATAATT
1145163 AAGATGGGAGGGGGAGACGAGTGATAATT
1 AAGATGGGAGGGGGAGACGAGTGATAATT
1145192 AATG-TGGGAG
1 AA-GATGGGAG
1145202 ACAGATAGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 20
0.64 0.07 0.29
Matches are distributed among these distances:
20 5 0.11
21 2 0.05
22 2 0.05
23 8 0.18
26 8 0.18
27 2 0.05
28 2 0.05
29 14 0.32
30 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.45, T:0.19
Consensus pattern (29 bp):
AAGATGGGAGGGGGAGACGAGTGATAATT
Found at i:1150329 original size:32 final size:32
Alignment explanation
Indices: 1150293--1150353 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
1150283 CAATTATAAC
1150293 ACTAAAGCAATCGATTTTAACTGAATTAACCG
1 ACTAAAGCAATCGATTTTAACTGAATTAACCG
1150325 ACTAAAGCAATCGATTTTAACTGAATTAA
1 ACTAAAGCAATCGATTTTAACTGAATTAA
1150354 TAAGTCGAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (32 bp):
ACTAAAGCAATCGATTTTAACTGAATTAACCG
Found at i:1152889 original size:3 final size:3
Alignment explanation
Indices: 1152883--1152947 Score: 76
Period size: 3 Copynumber: 21.0 Consensus size: 3
1152873 TCATTTAAAT
** * *
1152883 TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA GTA TTA TTA TTA TAA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1152931 TTA TATA TTA TTTA TTA
1 TTA T-TA TTA -TTA TTA
1152948 AATATTACAA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
3 46 0.88
4 6 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:1155130 original size:18 final size:18
Alignment explanation
Indices: 1155085--1155131 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 18
1155075 TTTCAAATTA
*
1155085 TTTA-TTTATTTATTTAT
1 TTTATTTTATTTATATAT
** *
1155102 TTTATAATATTTATATGT
1 TTTATTTTATTTATATAT
1155120 TTTATTTTATTT
1 TTTATTTTATTT
1155132 GCAATTATTT
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (18 bp):
TTTATTTTATTTATATAT
Found at i:1155141 original size:15 final size:13
Alignment explanation
Indices: 1155121--1155158 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 13
1155111 TTTATATGTT
1155121 TTATTTTATTTGCAA
1 TTATTTTATTT-C-A
1155136 TTATTTTATTTCA
1 TTATTTTATTTCA
1155149 TTA-TTTATTT
1 TTATTTTATTT
1155159 TTTTTTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.30
13 4 0.17
14 1 0.04
15 11 0.48
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (13 bp):
TTATTTTATTTCA
Found at i:1162077 original size:115 final size:114
Alignment explanation
Indices: 1161855--1162091 Score: 348
Period size: 115 Copynumber: 2.1 Consensus size: 114
1161845 AAACATTAAC
* * * *
1161855 TGAAAGATGAATTTGCTCATGGTAGAAATAAGGAGACTCAATAGCATCTTCTGGAAGTGTTCTTT
1 TGAAAGATAAATTTGCTCATAGTAGAAATAACGAGACCCAATAGCATCTTCTGGAAGTGTTCTTT
* * * * * *
1161920 GAGTTATCTGATCTGATTTGGTATGAACTCCAAAATCAATCATTGGATT
66 AAGTTATCTGATCTGATTCGGTAGGAACCCCAAAACCAATCATTGGAAT
*
1161969 TGAAAGATAAATTTTGCTCATAGTAGAAATAACGAGGCCCAATAGCATCTTCTGGAAGTGTTCTT
1 TGAAAGATAAA-TTTGCTCATAGTAGAAATAACGAGACCCAATAGCATCTTCTGGAAGTGTTCTT
* *
1162034 TAAGTTATCTGATCTGATTCGGTAGGAACCCCAGAACCGATCATTGGAAT
65 TAAGTTATCTGATCTGATTCGGTAGGAACCCCAAAACCAATCATTGGAAT
1162084 TGAAAGAT
1 TGAAAGAT
1162092 GAACTGCATG
Statistics
Matches: 109, Mismatches: 13, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
114 10 0.09
115 99 0.91
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (114 bp):
TGAAAGATAAATTTGCTCATAGTAGAAATAACGAGACCCAATAGCATCTTCTGGAAGTGTTCTTT
AAGTTATCTGATCTGATTCGGTAGGAACCCCAAAACCAATCATTGGAAT
Found at i:1164237 original size:54 final size:55
Alignment explanation
Indices: 1164130--1164251 Score: 176
Period size: 54 Copynumber: 2.3 Consensus size: 55
1164120 AAAGAGCTTC
***
1164130 AATG-TTTACGAACATCTGAGCAGAAGCCACAAAAAAAAAATGAATGTGTTGTCA
1 AATGTTTTACGAACATCTGAGCAGAAGCCACAAAAAAAAAATGAATGCACTGTCA
** *
1164184 AATGTTTTACGAACATCTGAGCAGAAGCCAC-AGGAAAAGATGAATGCACTGTCA
1 AATGTTTTACGAACATCTGAGCAGAAGCCACAAAAAAAAAATGAATGCACTGTCA
1164238 AATGTTTTACGAAC
1 AATGTTTTACGAAC
1164252 CTGTTATTCT
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 35 0.57
55 26 0.43
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (55 bp):
AATGTTTTACGAACATCTGAGCAGAAGCCACAAAAAAAAAATGAATGCACTGTCA
Found at i:1164647 original size:22 final size:22
Alignment explanation
Indices: 1164618--1164672 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
1164608 ATCTACACTC
1164618 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
1164640 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
1164662 TTCAAAGATGA
1 TTCAAAGATGA
1164673 AAATTTTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:1165448 original size:76 final size:76
Alignment explanation
Indices: 1165348--1166291 Score: 1772
Period size: 76 Copynumber: 12.5 Consensus size: 76
1165338 GCTATTTCCC
*
1165348 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1165413 AAGCCTTCGGG
66 AAGCCTTCGGG
1165424 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1165489 AAGCCTTCGGG
66 AAGCCTTCGGG
1165500 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1165565 AAGCCTTCGGG
66 AAGCCTTCGGG
1165576 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCC-AAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1165640 AAGCCTTCGGG
66 AAGCCTTCGGG
*
1165651 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1165716 AAGCCTTCGGG
66 AAGCCTTCGGG
1165727 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1165792 AAGCCTTCGGG
66 AAGCCTTCGGG
*
1165803 TCATCTGTAAGTCCTTCAGTGCATGATATTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1165868 AAGCCTTCGGG
66 AAGCCTTCGGG
*
1165879 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1165944 AAGCCTTCGGG
66 AAGCCTTCGGG
1165955 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1166020 AAGCCTTCGGG
66 AAGCCTTCGGG
1166031 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCC-AAAAGCCTTCGGGAGC-TTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
* *
1166094 AATCCTTAGGG
66 AAGCCTTCGGG
1166105 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1166170 AAGCCTTCGGG
66 AAGCCTTCGGG
*
1166181 TCATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGC-TTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1166245 AAGCC-TCAGGG
66 AAGCCTTC-GGG
*
1166256 TCATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAA
1166292 CATTTCCATC
Statistics
Matches: 852, Mismatches: 12, Indels: 9
0.98 0.01 0.01
Matches are distributed among these distances:
74 58 0.07
75 165 0.19
76 629 0.74
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (76 bp):
TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
AAGCCTTCGGG
Found at i:1165895 original size:303 final size:303
Alignment explanation
Indices: 1165348--1166291 Score: 1770
Period size: 303 Copynumber: 3.1 Consensus size: 303
1165338 GCTATTTCCC
1165348 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGATGTTTTCA
1165413 AAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
66 AAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
1165478 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
131 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
1165543 CGGGAGCTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTC
196 CGGGAGCTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTC
1165608 CAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTCGGG
261 CAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTCGGG
1165651 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGATGTTTTCA
1165716 AAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
66 AAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
*
1165781 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATATTTCCAAAAAGCCTT
131 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
1165846 CGGGAGCTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTC
196 CGGGAGCTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTC
*
1165911 CAAAAAGCCTTCGAGAGCTTTTTGATGTTTTCAAAGCCTTCGGG
261 C-AAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTCGGG
*
1165955 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGATGTTTTCA
1166020 AAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCC-AAAAGCCTTCGGGAGC-TTT
66 AAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
* *
1166083 TGATGTTTTCAAATCCTTAGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
131 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
1166148 CGGGAGCTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTT
196 CGGGAGCTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATG-TTT
*
1166213 CAAAAAGCCTTCGGGAGC-TTTTGATGTTTTCAAAGCC-TCAGGG
260 CCAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTC-GGG
*
1166256 TCATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAA
1 TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAA
1166292 CATTTCCATC
Statistics
Matches: 629, Mismatches: 9, Indels: 8
0.97 0.01 0.01
Matches are distributed among these distances:
300 2 0.00
301 57 0.09
302 141 0.22
303 280 0.45
304 149 0.24
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (303 bp):
TCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGATGTTTTCA
AAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTT
TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTT
CGGGAGCTTTTTGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGTCCTTCAGTGCATGATGTTTC
CAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGCCTTCGGG
Found at i:1166425 original size:3 final size:3
Alignment explanation
Indices: 1166419--1166479 Score: 70
Period size: 3 Copynumber: 20.0 Consensus size: 3
1166409 TCATTTAAAT
** *
1166419 TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA GTA TTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1166466 TATA TTA TTTA TTA
1 T-TA TTA -TTA TTA
1166480 AATATTACAA
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
2 2 0.04
3 41 0.84
4 6 0.12
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:1170224 original size:21 final size:21
Alignment explanation
Indices: 1170199--1170238 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
1170189 CCGGAGTTAT
1170199 TTTATTATATATATATATATA
1 TTTATTATATATATATATATA
*
1170220 TTTATTATATATGTATATA
1 TTTATTATATATATATATA
1170239 GTAATATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTATTATATATATATATATA
Found at i:1170360 original size:77 final size:75
Alignment explanation
Indices: 1170272--1170493 Score: 216
Period size: 76 Copynumber: 2.9 Consensus size: 75
1170262 TTTTAACGAA
* * *
1170272 ATATAATATATAGATTTTAGAAAATATTTTGAA-AACATTTATATATTATATAGTTTTTAAAACA
1 ATATAATATAGAG-TTTTAGAAAACATTTTGAAGAA-A-TTATATAATATATAG-TTTTAAAA-A
1170336 -ATTTTAAAAAAACTT
61 TATTTTAAAAAAA-TT
* ** *
1170351 ATATAATATATAGTTTTTTAAAACATTTTTAAGAAATTATATAATATATAGTTTTAAAAATATTT
1 ATATAATATAGAGTTTTAGAAAACATTTTGAAGAAATTATATAATATATAGTTTTAAAAATATTT
**
1170416 TTGAAAAATT
66 TAAAAAAATT
* ** * *
1170426 ATATAATATATAGTTAAAAAAAACATTTTTTGAA-AAATTATATAATATATAATTTTAAAAATAC
1 ATATAATATAGAGTTTTAGAAAACA--TTTTGAAGAAATTATATAATATATAGTTTTAAAAATA-
1170490 TTTT
63 TTTT
1170494 TGAAAATATA
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
75 24 0.19
76 46 0.37
77 24 0.19
78 16 0.13
79 15 0.12
ACGTcount: A:0.49, C:0.03, G:0.05, T:0.44
Consensus pattern (75 bp):
ATATAATATAGAGTTTTAGAAAACATTTTGAAGAAATTATATAATATATAGTTTTAAAAATATTT
TAAAAAAATT
Found at i:1170456 original size:39 final size:37
Alignment explanation
Indices: 1170272--1170514 Score: 249
Period size: 39 Copynumber: 6.3 Consensus size: 37
1170262 TTTTAACGAA
*
1170272 ATATAATATATAGATTTTAGAAA-ATATTTTGAAAACATTT
1 ATATAATATATAG-TTTTAAAAACAT-TTTTGAAAA-A-TT
* * **
1170312 ATATATTATATAGTTTTTAAAACAATTTTAAAAAAACTT
1 ATATAATATATAGTTTTAAAAAC-ATTTTTGAAAAA-TT
*
1170351 ATATAATATATAGTTTTTTAAAACATTTTT-AAGAAATT
1 ATATAATATATAG-TTTTAAAAACATTTTTGAA-AAATT
*
1170389 ATATAATATATAGTTTTAAAAATATTTTTGAAAAATT
1 ATATAATATATAGTTTTAAAAACATTTTTGAAAAATT
**
1170426 ATATAATATATAGTTAAAAAAAACATTTTTTGAAAAATT
1 ATATAATATATAGTT-TTAAAAACA-TTTTTGAAAAATT
* *
1170465 ATATAATATATAATTTTAAAAATACTTTTTG-AAAATAT
1 ATATAATATATAGTTTTAAAAACA-TTTTTGAAAAAT-T
*
1170503 ATATATTATATA
1 ATATAATATATA
1170515 ATAATTTTTT
Statistics
Matches: 176, Mismatches: 19, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
37 39 0.22
38 49 0.28
39 57 0.32
40 29 0.16
41 2 0.01
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (37 bp):
ATATAATATATAGTTTTAAAAACATTTTTGAAAAATT
Found at i:1170546 original size:12 final size:13
Alignment explanation
Indices: 1170526--1170568 Score: 56
Period size: 12 Copynumber: 3.5 Consensus size: 13
1170516 TAATTTTTTC
1170526 TATTTACTTATTT
1 TATTTACTTATTT
1170539 TA-TTACTTA-TT
1 TATTTACTTATTT
1170550 TATTTACTT-TATT
1 TATTTACTTAT-TT
1170563 TATTTA
1 TATTTA
1170569 TTTTTTTCGT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 4 0.15
12 13 0.48
13 10 0.37
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (13 bp):
TATTTACTTATTT
Found at i:1176253 original size:34 final size:37
Alignment explanation
Indices: 1176181--1176255 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
1176171 CTATAATTTT
*
1176181 ATAAATAAAAATATTAAGATTATTATATTTTATGAAA
1 ATAAATAAAAATATTAAGATTAATATATTTTATGAAA
* *
1176218 ATAAATTAAAATATT-AGATTAAT-TA-TTTATTAAA
1 ATAAATAAAAATATTAAGATTAATATATTTTATGAAA
1176252 ATAA
1 ATAA
1176256 TCATAATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
34 12 0.34
35 2 0.06
36 7 0.20
37 14 0.40
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (37 bp):
ATAAATAAAAATATTAAGATTAATATATTTTATGAAA
Found at i:1176316 original size:8 final size:8
Alignment explanation
Indices: 1176286--1176335 Score: 57
Period size: 8 Copynumber: 6.2 Consensus size: 8
1176276 TATTGCTTAT
1176286 TATTAAAA
1 TATTAAAA
* *
1176294 TAATAATAT
1 TATTAA-AA
1176303 TATTAAAA
1 TATTAAAA
1176311 TATTAAAA
1 TATTAAAA
*
1176319 -ATTATAA
1 TATTAAAA
1176326 TATTAAAA
1 TATTAAAA
1176334 TA
1 TA
1176336 AGAATAATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
7 6 0.18
8 22 0.65
9 6 0.18
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TATTAAAA
Found at i:1176327 original size:15 final size:15
Alignment explanation
Indices: 1176304--1176333 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1176294 TAATAATATT
1176304 ATTAAAATATTAAAA
1 ATTAAAATATTAAAA
*
1176319 ATTATAATATTAAAA
1 ATTAAAATATTAAAA
1176334 TAAGAATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
ATTAAAATATTAAAA
Found at i:1176484 original size:17 final size:18
Alignment explanation
Indices: 1176456--1176496 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
1176446 AGTACAATTT
*
1176456 TATATATTATAATAATAA
1 TATATATTATAACAATAA
1176474 TATAT-TTATAACAATAA
1 TATATATTATAACAATAA
*
1176491 AATATA
1 TATATA
1176497 ATATTATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
TATATATTATAACAATAA
Found at i:1176491 original size:46 final size:47
Alignment explanation
Indices: 1176440--1176528 Score: 110
Period size: 46 Copynumber: 1.9 Consensus size: 47
1176430 ACATTATTGA
* * *
1176440 AATAAAAGTACAATTTTATA-TATTATAATAAT-AATATATTTATAAC
1 AATAAAA-TACAATATTATATTATTAAAATAATCAATAAATTTATAAC
* *
1176486 AATAAAATATAATATTATATTATTAAAATTATCAATAAATTTA
1 AATAAAATACAATATTATATTATTAAAATAATCAATAAATTTA
1176529 GTTTAATAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
45 10 0.28
46 17 0.47
47 9 0.25
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (47 bp):
AATAAAATACAATATTATATTATTAAAATAATCAATAAATTTATAAC
Found at i:1177559 original size:118 final size:118
Alignment explanation
Indices: 1177348--1177581 Score: 353
Period size: 118 Copynumber: 2.0 Consensus size: 118
1177338 TTTGGACCCC
* * * * **
1177348 AATTTTTTATATTTATAATTAGGTCTCGTAATTTTTATAATTTCATAAAATTTTTAGTTCTTGGT
1 AATTTTTCATATTTATAATTAGGTCCCGTAATTTATATAATTTCATAAAATGTTTAGTTCTTGAC
1177413 CCTCTTTTTCCATTTCTCTTATTAATTCATCCAATTTTGAATTAAATTTAACT
66 CCTCTTTTTCCATTTCTCTTATTAATTCATCCAATTTTGAATTAAATTTAACT
* * *
1177466 AATTTTTCATATTTATAATTAGAG-CCCTTAATTTATATAATTTCATAAAATGTTTAGTTTTTTA
1 AATTTTTCATATTTATAATTAG-GTCCCGTAATTTATATAATTTCATAAAATGTTTAGTTCTTGA
* *
1177530 CCCTCTTTTTCCATTTCTCTTATTTATTCATTCAATTTTGAATTAAATTTAA
65 CCCTCTTTTTCCATTTCTCTTATTAATTCATCCAATTTTGAATTAAATTTAA
1177582 TCATGTTTTT
Statistics
Matches: 104, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
118 103 0.99
119 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.05, T:0.53
Consensus pattern (118 bp):
AATTTTTCATATTTATAATTAGGTCCCGTAATTTATATAATTTCATAAAATGTTTAGTTCTTGAC
CCTCTTTTTCCATTTCTCTTATTAATTCATCCAATTTTGAATTAAATTTAACT
Found at i:1185585 original size:20 final size:20
Alignment explanation
Indices: 1185559--1185614 Score: 94
Period size: 20 Copynumber: 2.8 Consensus size: 20
1185549 TGACCCTTTT
1185559 AGTATCGATATTTTACCACA
1 AGTATCGATATTTTACCACA
*
1185579 GGTATCGATATTTTACCACA
1 AGTATCGATATTTTACCACA
*
1185599 AGTATCGATACTTTAC
1 AGTATCGATATTTTAC
1185615 TCTTATTTCA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (20 bp):
AGTATCGATATTTTACCACA
Found at i:1191952 original size:29 final size:27
Alignment explanation
Indices: 1191920--1191991 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
1191910 CTGAAATTAG
*
1191920 AATAACATAAATTAAAGGGCAGAGATGTA
1 AATAACATAAATTAAAGGG-A-AAATGTA
1191949 AATAACATAAATTAAAGGGAAAATGTA
1 AATAACATAAATTAAAGGGAAAATGTA
* *
1191976 AATGACAGAAATTAAA
1 AATAACATAAATTAAA
1191992 ATAAATCGAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 20 0.50
28 1 0.03
29 19 0.47
ACGTcount: A:0.57, C:0.06, G:0.17, T:0.21
Consensus pattern (27 bp):
AATAACATAAATTAAAGGGAAAATGTA
Found at i:1191987 original size:27 final size:29
Alignment explanation
Indices: 1191912--1191991 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 29
1191902 TTTAAAGTCT
*
1191912 GAAAT-TAGAATAACATAAATTAAAGGGCA
1 GAAATGTA-AATAACAGAAATTAAAGGGCA
* *
1191941 GAGATGTAAATAACATAAATTAAAGGG-A
1 GAAATGTAAATAACAGAAATTAAAGGGCA
*
1191969 -AAATGTAAATGACAGAAATTAAA
1 GAAATGTAAATAACAGAAATTAAA
1191992 ATAAATCGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
27 20 0.43
28 1 0.02
29 23 0.50
30 2 0.04
ACGTcount: A:0.56, C:0.05, G:0.17, T:0.21
Consensus pattern (29 bp):
GAAATGTAAATAACAGAAATTAAAGGGCA
Found at i:1194532 original size:161 final size:162
Alignment explanation
Indices: 1194267--1194590 Score: 641
Period size: 161 Copynumber: 2.0 Consensus size: 162
1194257 GCACCAACGT
1194267 CTTTATTCTTCTAACGACTTATCCCTTCGCCCTTCAAGTGAATGATCTGTCCTTTTTGAATCTGA
1 CTTTATTCTTCTAACGACTTATCCCTTCGCCCTTCAAGTGAATGATCTGTCCTTTTTGAATCTGA
1194332 ATATCTTTTGCTCGGTTTGTCCTAATATGCAAGTATTAGTGCTTTTAATAGATTGATAAA-TCTT
66 ATATCTTTTGCTCGGTTTGTCCTAATATGCAAGTATTAGTGCTTTTAATAGATTGATAAATTCTT
1194396 CTGTATTCGAAATCTTCTCCATTGACTTGCCC
131 CTGTATTCGAAATCTTCTCCATTGACTTGCCC
1194428 CTTTATTCTTCTAACGACTTATCCCTTCGCCCTTCAAGTGAATGATCTGTCCTTTTTGAATCTGA
1 CTTTATTCTTCTAACGACTTATCCCTTCGCCCTTCAAGTGAATGATCTGTCCTTTTTGAATCTGA
1194493 ATATCTTTTGCTCGGTTTGTCCTAATATGCAAGTATTAGTGCTTTTAATAGATTGATAAATTCTT
66 ATATCTTTTGCTCGGTTTGTCCTAATATGCAAGTATTAGTGCTTTTAATAGATTGATAAATTCTT
1194558 CTGTATTCGAAATCTTCTCCATTGACTTGCCC
131 CTGTATTCGAAATCTTCTCCATTGACTTGCCC
1194590 C
1 C
1194591 AATCTCTCAT
Statistics
Matches: 162, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
161 125 0.77
162 37 0.23
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (162 bp):
CTTTATTCTTCTAACGACTTATCCCTTCGCCCTTCAAGTGAATGATCTGTCCTTTTTGAATCTGA
ATATCTTTTGCTCGGTTTGTCCTAATATGCAAGTATTAGTGCTTTTAATAGATTGATAAATTCTT
CTGTATTCGAAATCTTCTCCATTGACTTGCCC
Found at i:1194705 original size:17 final size:16
Alignment explanation
Indices: 1194676--1194717 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 16
1194666 TTATTCTTCA
1194676 TTCTTCTTTTTTATTTT
1 TTCTT-TTTTTTATTTT
1194693 TTCTTTTTATTTATTTT
1 TTCTTTTT-TTTATTTT
*
1194710 TTATTTTT
1 TTCTTTTT
1194718 CTCTTTTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 3 0.13
17 20 0.87
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (16 bp):
TTCTTTTTTTTATTTT
Found at i:1194732 original size:24 final size:23
Alignment explanation
Indices: 1194682--1194733 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
1194672 TTCATTCTTC
*
1194682 TTTTTTATTTTTTCTTTTTATTTA
1 TTTTTTATTTTTTCTTTTTA-TCA
1194706 TTTTTTATTTTTCTCTTTTTGA-CA
1 TTTTTTATTTTT-TCTTTTT-ATCA
1194730 TTTT
1 TTTT
1194734 AGGGGTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 17 0.68
25 7 0.28
26 1 0.04
ACGTcount: A:0.12, C:0.08, G:0.02, T:0.79
Consensus pattern (23 bp):
TTTTTTATTTTTTCTTTTTATCA
Found at i:1195474 original size:258 final size:257
Alignment explanation
Indices: 1194831--1195564 Score: 1012
Period size: 257 Copynumber: 2.8 Consensus size: 257
1194821 AATCATGCCC
* * *
1194831 GAAGGACTTATCA-CTCTACTCAAAAGACTTACAGAA-GACCTGAAGGGTTTAATCATCATGCTC
1 GAAGGACTTATCATCT-TGCTCAAAAGACTAACA-AATGA-CTGAAGGATTTAATCATCATGCTC
* ** ** *
1194894 GAAATACTTACTGATGGCCCCAA-AGACTTACCAATTTTTTAAATAGTTTACTAGGTAATAAACT
63 GAAAGACTTACTGATGGCCTGAAGA-ACTTACCAATTTTGGAAATAGTTTACTAGGTAAGAAACT
* * * * * *
1194958 TTGGAAATCGCTTTCATACTTTTCAAAGATTTTATTTTTTGAAAATATTAAAAGAGAAACTTTGA
127 TTGGAAATCGCTTTCTTACTTTTCAAA-AATTCATTTTCTGAAAATATTAAATGAAAAACTTTGA
* *
1195023 AAAT-GCTTTCTCATTTTTCAAATTATCAAATAAAAGCATCTAGCCCAAAGGTCTTATATATGGC
191 AAATCGCTTTCTCATTTTTCAAATTATCAAATAAAAGCATCTAGCACAAAGGTATTATATATGGC
*
1195087 CC
256 CA
* * * *
1195089 GAAGGACTTATCATCTTGTTCAAAAGACTGAC-AATGACTCAAATGATTTAATCATCATGCTCGA
1 GAAGGACTTATCATCTTGCTCAAAAGACTAACAAATGACT-GAAGGATTTAATCATCATGCTCGA
1195153 AAGACTTACTGATGGCCTGAAGAACTTACCAATTTTGGAAATAGTTTACTAGGTAAGAAACTTTG
65 AAGACTTACTGATGGCCTGAAGAACTTACCAATTTTGGAAATAGTTTACTAGGTAAGAAACTTTG
* **
1195218 TAAATCGCTTTCTTACTTTTCAAAAATTCATTTTCTGAAAATATTAAATGATCAACTTTGAAAAT
130 GAAATCGCTTTCTTACTTTTCAAAAATTCATTTTCTGAAAATATTAAATGAAAAACTTTGAAAAT
* * * *
1195283 CGCTTTCTCATTTTTCAAATTATCATATGAAAGCATCTTGCATAAAGGTATTAT-TGATGGCCA
195 CGCTTTCTCATTTTTCAAATTATCAAATAAAAGCATCTAGCACAAAGGTATTATAT-ATGGCCA
* * *
1195346 GAATGACTTATCATCTTGCTCCAAAGACTAACAAATGATCTGAAGGATTTAATCATCATGCTCAA
1 GAAGGACTTATCATCTTGCTCAAAAGACTAACAAATGA-CTGAAGGATTTAATCATCATGCTCGA
*
1195411 AAGACTTACTGATGGCCTGAAGAACTTACCAATTTTGGAAATAGTATACTAGGTAAGAAACTTTG
65 AAGACTTACTGATGGCCTGAAGAACTTACCAATTTTGGAAATAGTTTACTAGGTAAGAAACTTTG
* * *
1195476 GAAATTGCTTTCTTACTTTTCAAAAACTTCATTTTCTAAAAATACTAAATGAAAAACTTTGAAAA
130 GAAATCGCTTTCTTACTTTTCAAAAA-TTCATTTTCTGAAAATATTAAATGAAAAACTTTGAAAA
*
1195541 TCGCTTTCCCATTTTTCAAATTAT
194 TCGCTTTCTCATTTTTCAAATTAT
1195565 ATAAAAACAT
Statistics
Matches: 425, Mismatches: 42, Indels: 17
0.88 0.09 0.04
Matches are distributed among these distances:
256 40 0.09
257 183 0.43
258 141 0.33
259 61 0.14
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (257 bp):
GAAGGACTTATCATCTTGCTCAAAAGACTAACAAATGACTGAAGGATTTAATCATCATGCTCGAA
AGACTTACTGATGGCCTGAAGAACTTACCAATTTTGGAAATAGTTTACTAGGTAAGAAACTTTGG
AAATCGCTTTCTTACTTTTCAAAAATTCATTTTCTGAAAATATTAAATGAAAAACTTTGAAAATC
GCTTTCTCATTTTTCAAATTATCAAATAAAAGCATCTAGCACAAAGGTATTATATATGGCCA
Done.