genome.fa.s7983.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007983.1 Hibiscus syriacus cultivar Beakdansim tig00110428_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  198508

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6728--6934	87	2.4	87	87	2	308	38	14	20	26	1.91
9604--9647	18	2.6	16	82	13	52	65	6	0	27	1.17
10634--10704	31	2.3	30	81	13	74	60	2	9	26	1.42
10820--10894	10	7.2	10	71	21	57	65	1	4	29	1.19
12435--12737	65	4.6	65	73	11	238	43	10	18	27	1.82
12272--12643	165	2.2	168	80	6	398	41	10	18	29	1.84
12567--12816	36	7.2	36	70	13	184	44	9	18	27	1.80
12514--12815	136	2.2	137	88	2	457	45	9	17	27	1.80
12741--12833	36	2.6	36	85	0	105	44	10	15	30	1.80
14086--14308	95	2.5	87	77	14	240	32	20	18	28	1.96
14153--14329	95	1.9	96	91	3	295	30	19	18	31	1.96
18605--18699	3	32.0	3	72	21	60	65	1	4	29	1.18
25030--25082	21	2.5	21	93	0	88	22	24	16	35	1.95
25072--25244	20	8.6	20	94	0	301	41	20	18	20	1.91
25442--25507	22	3.0	22	79	0	78	25	39	13	21	1.90
25843--25892	20	2.5	20	93	3	84	10	18	22	50	1.76
27774--27950	20	9.5	20	78	17	159	42	22	18	16	1.89
27774--27971	40	5.5	37	76	16	177	42	21	18	16	1.89
27777--27982	107	1.9	107	90	2	324	43	21	18	16	1.88
27997--28123	20	6.3	20	93	0	128	22	19	21	36	1.95
27995--28123	40	3.2	40	88	0	177	22	20	21	35	1.96
28603--28710	21	5.2	20	68	16	58	21	36	18	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28604--28714	42	2.6	42	77	5	109	21	36	18	23	1.94
30035--30070	14	2.6	14	90	0	54	30	0	22	47	1.52
30246--30321	33	2.3	34	95	2	136	13	23	19	43	1.86
30261--30341	33	2.4	33	87	2	108	14	23	20	40	1.90
30313--30367	20	2.8	20	94	5	94	21	21	25	30	1.98
32614--32689	38	2.0	38	100	0	152	26	28	7	36	1.84
32796--32849	24	2.2	24	93	0	90	40	20	18	20	1.91
33691--33757	20	3.3	20	95	0	116	22	19	26	31	1.98
33751--33836	20	4.3	20	98	0	163	23	19	17	39	1.92
33833--33878	21	2.2	21	88	0	65	41	17	23	17	1.90
34188--34242	2	27.5	2	100	0	110	49	0	0	50	1.00
35061--35099	18	2.0	20	85	9	55	56	2	2	38	1.27
37243--37399	59	2.6	58	74	8	145	34	17	4	43	1.70
37436--37466	16	1.9	16	93	0	53	35	6	6	51	1.53
38921--38964	21	2.1	21	86	0	61	29	27	27	15	1.96
38991--39035	22	2.0	22	86	4	63	31	33	26	8	1.87
39728--39852	31	4.0	30	80	13	137	29	20	20	30	1.97
44132--44176	22	2.0	22	86	4	63	31	33	26	8	1.87
44871--44992	31	3.9	31	78	11	99	31	20	18	29	1.96
44982--45053	30	2.4	30	92	0	117	23	20	25	30	1.99
45745--45863	64	1.9	63	81	8	143	36	21	17	24	1.94
46644--46693	20	2.5	20	80	0	55	30	20	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47807--47854	21	2.3	21	92	3	80	22	12	27	37	1.90
51214--51272	28	2.1	28	96	0	109	30	16	18	33	1.94
58404--58461	30	1.9	30	96	0	107	34	13	12	39	1.82
58659--58714	16	3.4	16	68	18	51	21	19	26	32	1.97
58675--58731	18	3.3	18	67	18	57	19	17	29	33	1.95
58627--58731	34	3.1	34	95	1	183	20	18	29	32	1.96
61577--61609	14	2.4	14	94	0	57	33	6	30	30	1.82
61824--61851	3	9.3	3	100	0	56	0	0	32	67	0.91
63194--63256	3	21.7	3	93	6	112	33	0	0	66	0.92
63311--63379	33	2.1	33	83	0	84	46	13	10	30	1.75
67314--67733	221	1.9	216	89	3	653	34	22	16	25	1.95
67314--67733	110	3.8	110	88	2	607	34	22	16	25	1.95
68052--68133	43	1.9	43	89	0	128	30	31	14	23	1.94
68052--68115	21	3.0	22	66	13	60	31	34	9	25	1.87
67693--68791	241	4.6	241	91	0	1709	30	24	18	25	1.98
69327--69393	33	2.0	33	97	0	125	43	19	10	26	1.83
69333--69407	33	2.3	32	90	9	116	41	17	13	28	1.87
70645--70692	22	2.2	21	77	3	51	56	2	6	35	1.36
72145--72183	16	2.4	16	82	0	51	56	2	5	35	1.35
73357--73408	5	9.4	5	78	17	50	57	0	0	42	0.98
73620--73661	20	2.1	20	90	0	66	38	16	19	26	1.92
73719--74458	105	7.0	105	96	0	1327	22	18	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73719--74458	316	2.3	315	96	0	1354	22	18	24	33	1.97
75212--75316	55	1.9	54	84	1	138	14	24	12	48	1.78
87182--87229	22	2.1	23	88	11	73	56	0	0	43	0.99
93151--93190	21	1.9	22	85	10	57	30	0	2	67	1.04
95241--95292	27	2.0	26	82	14	63	57	3	1	36	1.28
95289--95329	18	2.2	19	86	4	57	65	0	4	29	1.13
95386--95430	22	2.1	21	84	8	56	68	0	4	26	1.08
96179--96284	29	3.6	29	89	2	158	37	0	12	50	1.40
96202--96338	29	4.7	29	81	4	143	39	2	11	46	1.52
96179--96338	58	2.7	59	79	7	148	38	1	11	48	1.50
96294--96370	30	2.6	30	81	4	86	41	2	5	50	1.38
100824--100875	17	3.1	17	71	15	54	46	5	0	48	1.26
100824--100896	33	2.2	33	90	0	110	43	5	0	50	1.25
110325--110373	22	2.1	25	85	11	68	61	0	0	38	0.96
110325--110397	29	2.4	29	82	11	76	56	1	0	42	1.08
110338--110385	24	2.0	24	84	8	62	58	2	0	39	1.10
110413--110456	22	2.0	23	86	4	63	54	0	0	45	0.99
110417--110473	21	2.6	22	81	10	64	52	0	0	47	1.00
110353--110473	54	2.3	51	77	19	133	50	0	0	47	1.12
110656--110775	42	2.9	42	100	0	240	43	19	21	15	1.88
113294--113339	24	1.9	24	82	8	58	65	6	4	23	1.35
120994--121023	16	1.9	15	93	6	51	46	6	0	46	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131501--131570	32	2.2	32	84	2	88	45	14	4	35	1.64
134084--134135	24	2.2	24	92	0	86	51	17	21	9	1.73
134117--134220	10	9.4	10	68	19	55	59	20	8	11	1.58
134117--134205	23	3.8	23	81	8	117	59	21	8	10	1.57
134413--134461	14	3.5	14	82	0	62	55	14	16	14	1.70
138639--138768	59	2.2	60	82	9	160	30	21	6	41	1.77
140248--140686	228	1.9	233	87	7	649	42	14	12	30	1.83
159037--159138	51	2.0	51	86	3	143	41	12	16	29	1.86
162566--162929	191	1.9	191	92	0	611	35	9	14	40	1.79
163859--163927	24	2.9	24	75	0	75	55	18	10	15	1.68
163859--163928	12	5.8	12	75	6	52	54	18	11	15	1.71
190462--190589	39	3.2	39	61	10	96	43	16	32	7	1.76
190438--190616	81	2.2	81	96	3	326	50	13	29	6	1.67
192229--192282	28	2.0	26	89	7	81	35	16	11	37	1.84
197328--197364	17	2.3	15	90	9	56	13	24	43	18	1.86

Tables:   1

The End!