Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007984.1 Hibiscus syriacus cultivar Beakdansim tig00110429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12923621
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 65
Found at i:9930 original size:21 final size:20
Alignment explanation
Indices: 9881--9932 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
9871 AAATGACAAA
*
9881 AAAATAAA-TATTTTAAAAT
1 AAAATAAATTATTATAAAAT
9900 ACTAAA-AAATTATTATAAAATT
1 A--AAATAAATTATTATAAAA-T
9922 AAAATAAATTA
1 AAAATAAATTA
9933 AATATATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
19 1 0.04
20 6 0.22
21 18 0.67
22 2 0.07
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (20 bp):
AAAATAAATTATTATAAAAT
Found at i:10379 original size:16 final size:17
Alignment explanation
Indices: 10353--10385 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
10343 AATGTTGATG
10353 ATGTGACTATATATTAT
1 ATGTGACTATATATTAT
10370 ATGT-ACTATATATTAT
1 ATGTGACTATATATTAT
10386 GTATAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.36, C:0.06, G:0.09, T:0.48
Consensus pattern (17 bp):
ATGTGACTATATATTAT
Found at i:10395 original size:16 final size:16
Alignment explanation
Indices: 10360--10398 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
10350 ATGATGTGAC
* *
10360 TATATATTATATGTAC
1 TATATATTATATATAA
*
10376 TATATATTATGTATAA
1 TATATATTATATATAA
10392 TATATAT
1 TATATAT
10399 ATTCAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (16 bp):
TATATATTATATATAA
Found at i:10506 original size:21 final size:20
Alignment explanation
Indices: 10482--10530 Score: 53
Period size: 22 Copynumber: 2.4 Consensus size: 20
10472 CTAATAAGAT
10482 TTTTAGTATTTTAAATATATA
1 TTTTAGTATTTTAAATATA-A
* * *
10503 TTTTAATTTTTTTAAATTTAA
1 TTTT-AGTATTTTAAATATAA
10524 TTTTAGT
1 TTTTAGT
10531 TTTAATATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 2 0.09
21 9 0.39
22 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (20 bp):
TTTTAGTATTTTAAATATAA
Found at i:10533 original size:21 final size:22
Alignment explanation
Indices: 10482--10533 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
10472 CTAATAAGAT
*
10482 TTTTAG-TATTTTAAATATATA
1 TTTTAGTTTTTTTAAATATATA
* *
10503 TTTTAATTTTTTTAAATTTA-A
1 TTTTAGTTTTTTTAAATATATA
10524 TTTTAGTTTT
1 TTTTAGTTTT
10534 AATATTTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (22 bp):
TTTTAGTTTTTTTAAATATATA
Found at i:10540 original size:14 final size:14
Alignment explanation
Indices: 10531--10579 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
10521 TAATTTTAGT
10531 TTTAATATTTTATA
1 TTTAATATTTTATA
*
10545 TTTAATTTTTTGAATA
1 TTTAATATTTT--ATA
*
10561 TTCAATATTTTATA
1 TTTAATATTTTATA
10575 TTTAA
1 TTTAA
10580 GACTTTACAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 17 0.59
16 12 0.41
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (14 bp):
TTTAATATTTTATA
Found at i:10548 original size:26 final size:27
Alignment explanation
Indices: 10503--10553 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
10493 TAAATATATA
*
10503 TTTTAATTTTTTTAAATTTAATTTTAG
1 TTTTAATTATTTTAAATTTAATTTTAG
*
10530 TTTTAA-TATTTTATATTTAATTTT
1 TTTTAATTATTTTAAATTTAATTTT
10554 TTGAATATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (27 bp):
TTTTAATTATTTTAAATTTAATTTTAG
Found at i:22549 original size:13 final size:13
Alignment explanation
Indices: 22533--22560 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
22523 GGATAAACTT
22533 CCCCATCCCCATC
1 CCCCATCCCCATC
22546 CCCCATCCCCATC
1 CCCCATCCCCATC
22559 CC
1 CC
22561 GTGGGGAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.71, G:0.00, T:0.14
Consensus pattern (13 bp):
CCCCATCCCCATC
Found at i:22652 original size:2 final size:2
Alignment explanation
Indices: 22645--22670 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
22635 GTCACCCCTA
22645 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
22671 CATTACCCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23086 original size:2 final size:2
Alignment explanation
Indices: 23079--23130 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
23069 TTCTAATTTA
23079 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23121 AT AT AT AT AT
1 AT AT AT AT AT
23131 CTTATCATTG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23341 original size:13 final size:13
Alignment explanation
Indices: 23303--23341 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
23293 TTTGACCGAC
*
23303 TGATTTGATTAGT
1 TGATTTGATTAAT
*
23316 TGATTTGA-GAAT
1 TGATTTGATTAAT
23328 TGATTTGATTAAT
1 TGATTTGATTAAT
23341 T
1 T
23342 TTTTATATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.51
Consensus pattern (13 bp):
TGATTTGATTAAT
Found at i:24117 original size:47 final size:46
Alignment explanation
Indices: 24048--24188 Score: 184
Period size: 47 Copynumber: 3.1 Consensus size: 46
24038 CAAACACAAC
24048 ATAAACTATAA-ACTATATATATATATATATAAGATATAAATATATAT
1 ATAAACTATAATA-TATATATATATATATAT-AGATATAAATATATAT
* *
24095 ATAAACTATAATATATATATATATATA-ATATATATATATATATAT
1 ATAAACTATAATATATATATATATATATATAGATATAAATATATAT
*
24140 ATATA-TAT-ATATATATATATATATATATAG-TATAAAGTATATAAT
1 ATAAACTATAATATATATATATATATATATAGATATAAA-TATAT-AT
24185 ATAA
1 ATAA
24189 GCATATGTAT
Statistics
Matches: 84, Mismatches: 6, Indels: 10
0.84 0.06 0.10
Matches are distributed among these distances:
43 22 0.26
44 11 0.13
45 23 0.27
46 2 0.02
47 25 0.30
48 1 0.01
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (46 bp):
ATAAACTATAATATATATATATATATATATAGATATAAATATATAT
Found at i:24203 original size:2 final size:2
Alignment explanation
Indices: 24061--24187 Score: 163
Period size: 2 Copynumber: 64.0 Consensus size: 2
24051 AACTATAAAC
* * *
24061 TA TA TA TA TA TA TA TA TA -A GA TA TA AA TA TA TA TA TA AA CTA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
24103 TA -A TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
24143 TA TA TA TA TA TA TA TA TA TA TA TA TA GTA TA AA GTA TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA
24186 TA
1 TA
24188 AGCATATGTA
Statistics
Matches: 111, Mismatches: 7, Indels: 14
0.84 0.05 0.11
Matches are distributed among these distances:
1 4 0.04
2 103 0.93
3 4 0.04
ACGTcount: A:0.53, C:0.01, G:0.02, T:0.44
Consensus pattern (2 bp):
TA
Found at i:24408 original size:23 final size:22
Alignment explanation
Indices: 24375--24422 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
24365 CTTTTATATA
24375 TATATTAAAATT-TTAAGTTAAAT
1 TATATTAAAATTATTAA-TT-AAT
*
24398 TATATTTAAATTATTAATTAAT
1 TATATTAAAATTATTAATTAAT
24420 TAT
1 TAT
24423 TGCATAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 6 0.26
23 13 0.57
24 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
TATATTAAAATTATTAATTAAT
Found at i:28665 original size:24 final size:25
Alignment explanation
Indices: 28615--28671 Score: 89
Period size: 24 Copynumber: 2.3 Consensus size: 25
28605 AAATGTTAGT
28615 AAGTTAGTAAGAAAAATAAAAATAA
1 AAGTTAGTAAGAAAAATAAAAATAA
* *
28640 AAGTTAGTATGAACAAT-AAAATAA
1 AAGTTAGTAAGAAAAATAAAAATAA
28664 AAGTTAGT
1 AAGTTAGT
28672 GGTTAGCAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 15 0.50
25 15 0.50
ACGTcount: A:0.60, C:0.02, G:0.14, T:0.25
Consensus pattern (25 bp):
AAGTTAGTAAGAAAAATAAAAATAA
Found at i:28805 original size:120 final size:116
Alignment explanation
Indices: 28662--28971 Score: 435
Period size: 120 Copynumber: 2.6 Consensus size: 116
28652 ACAATAAAAT
28662 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCCTGATCGGGTCACCA
1 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCC-GATCGGGTCACCA
* *
28727 CAAGGTCGAATATAATAATGCAAACAAATATATAAAAATAA-AATAAATAACATAA
65 CAAGGTCGAATAGAATAATGCAAACAAATATATAAAAA-AATAA-AAA-AATA-AA
* * * *
28782 AAAAGTTAGTGGTTAGCACAGTCCGAACCATAACAATGTGGGTCTTACCCCGAATCGGATCACCA
1 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCCG-ATCGGGTCACCA
* *
28847 C-AGGTTGAATAGAATAATGTAAACAAATATATAAAAAAATAAAAAAATAAA
65 CAAGGTCGAATAGAATAATGCAAACAAATATATAAAAAAATAAAAAAATAAA
* * *
28898 AAAAGTTAATGGTTAGTAGAGTCCAAACCATAATAATGTGGGTATTACCCCGGATCGGGTCACCA
1 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCC-GATCGGGTCACCA
*
28963 TAAGGTCGA
65 CAAGGTCGA
28972 GTAATAAGAG
Statistics
Matches: 169, Mismatches: 17, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
116 58 0.34
117 10 0.06
118 5 0.03
119 36 0.21
120 60 0.36
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.23
Consensus pattern (116 bp):
AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCCGATCGGGTCACCAC
AAGGTCGAATAGAATAATGCAAACAAATATATAAAAAAATAAAAAAATAAA
Found at i:28893 original size:9 final size:8
Alignment explanation
Indices: 28877--28901 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
28867 AAACAAATAT
28877 ATAAAAAA
1 ATAAAAAA
28885 ATAAAAAA
1 ATAAAAAA
28893 ATAAAAAA
1 ATAAAAAA
28901 A
1 A
28902 GTTAATGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
ATAAAAAA
Found at i:28936 original size:116 final size:119
Alignment explanation
Indices: 28662--28971 Score: 441
Period size: 116 Copynumber: 2.6 Consensus size: 119
28652 ACAATAAAAT
28662 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCCTGATCGGGTCACCA
1 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCC-GATCGGGTCACCA
*
28727 CAAGGTCGAATATAATAATGCAAACAAATATATAAAAATAAAATAAATAACATAA
65 CAAGGTCGAATAGAATAATGCAAACAAATATATAAAAATAAAATAAATAACATAA
* * * *
28782 AAAAGTTAGTGGTTAGCACAGTCCGAACCATAACAATGTGGGTCTTACCCCGAATCGGATCACCA
1 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCCG-ATCGGGTCACCA
* * *
28847 C-AGGTTGAATAGAATAATGTAAACAAATATAT--AAA-AAAATAAA-AAAATAAA
65 CAAGGTCGAATAGAATAATGCAAACAAATATATAAAAATAAAATAAATAACAT-AA
* * *
28898 AAAAGTTAATGGTTAGTAGAGTCCAAACCATAATAATGTGGGTATTACCCCGGATCGGGTCACCA
1 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCC-GATCGGGTCACCA
*
28963 TAAGGTCGA
65 CAAGGTCGA
28972 GTAATAAGAG
Statistics
Matches: 169, Mismatches: 17, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
115 4 0.02
116 66 0.39
117 10 0.06
119 29 0.17
120 60 0.36
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.23
Consensus pattern (119 bp):
AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCCGATCGGGTCACCAC
AAGGTCGAATAGAATAATGCAAACAAATATATAAAAATAAAATAAATAACATAA
Found at i:29076 original size:29 final size:29
Alignment explanation
Indices: 29015--29078 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
29005 GTTATAATGC
* * *
29015 AATAAAATAAAAGTCAGTGGTTAATGTGC
1 AATAAAATAAAAGTCAATAGTTAATGTGA
* * *
29044 AATAAAATAAAAGTTAATAGTTAGTTTGA
1 AATAAAATAAAAGTCAATAGTTAATGTGA
29073 AATAAA
1 AATAAA
29079 TAACATAGCA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.52, C:0.03, G:0.16, T:0.30
Consensus pattern (29 bp):
AATAAAATAAAAGTCAATAGTTAATGTGA
Found at i:30256 original size:132 final size:132
Alignment explanation
Indices: 30105--30468 Score: 460
Period size: 132 Copynumber: 2.8 Consensus size: 132
30095 ATTTCAGTGT
* *
30105 TGATCTACCTCATTCTGTGATAGAATCGAGCAAAATATTGATGTTTATCCAACTCCTTATGTGAT
1 TGATCTACCTCATTCTGTGATAGAAT-GAGCAAAATATTGATGCTGATCCAACTCCTTATGTGAT
* * * * *
30170 GGATTTGAGTGAAATAAAAAATGTCGATCC-ACATCCTT-TTTAATGGAATCAAATGATATGTCG
65 GGATTTGAGCGAAATAAAAAATGTCGATCCAAC-TCCTTCTGTAATAGAATCAAACGAGATGTCG
30233 GTGC
129 GTGC
* * *
30237 TGATCTACATCCTTCTGTGATAGAATTGAGCAAAATATTGATGCTGATCCAACTCCTTATGCGAT
1 TGATCTACCTCATTCTGTGATAGAA-TGAGCAAAATATTGATGCTGATCCAACTCCTTATGTGAT
* **
30302 GGATTTGAGCGAAAT-AAAAATGTCGATCCAACTCCTTCTGTGATAGAATTGAACGAGATGTCGG
65 GGATTTGAGCGAAATAAAAAATGTCGATCCAACTCCTTCTGTAATAGAATCAAACGAGATGTCGG
**
30366 TTT
130 TGC
30369 TGATCTACCTCATTCTGTGAT---A-GAGCAAAA-ATTGATGCTGATCCAACTCCTTATGTGATG
1 TGATCTACCTCATTCTGTGATAGAATGAGCAAAATATTGATGCTGATCCAACTCCTTATGTGATG
* * *
30429 GATTTGAGCAAAAT-AAAAATGGT-GATCCACCTCATTCTGT
66 GATTTGAGCGAAATAAAAAAT-GTCGATCCAACTCCTTCTGT
30469 GATGGATGAA
Statistics
Matches: 207, Mismatches: 21, Indels: 14
0.86 0.09 0.06
Matches are distributed among these distances:
126 63 0.30
127 10 0.05
129 1 0.00
131 19 0.09
132 113 0.55
133 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (132 bp):
TGATCTACCTCATTCTGTGATAGAATGAGCAAAATATTGATGCTGATCCAACTCCTTATGTGATG
GATTTGAGCGAAATAAAAAATGTCGATCCAACTCCTTCTGTAATAGAATCAAACGAGATGTCGGT
GC
Found at i:30310 original size:44 final size:44
Alignment explanation
Indices: 30246--30475 Score: 132
Period size: 44 Copynumber: 5.4 Consensus size: 44
30236 CTGATCTACA
* * *
30246 TCCTTCTGTGATAGAATTGAGCAAAATATTGATGCTGATCCAAC
1 TCCTTATGTGATGGATTTGAGCAAAATATTGATGCTGATCCAAC
* * ***
30290 TCCTTATGCGATGGATTTGAGCGAAATAAAAATG-TCGATCCAAC
1 TCCTTATGTGATGGATTTGAGCAAAATATTGATGCT-GATCCAAC
* * * * * * * * * ** * *
30334 TCCTTCTGTGATAGAATTGAACGAGATGTCGGTTTTGATCTACC
1 TCCTTATGTGATGGATTTGAGCAAAATATTGATGCTGATCCAAC
* *
30378 TCATTCTGTGAT--A---GAGCAAAA-ATTGATGCTGATCCAAC
1 TCCTTATGTGATGGATTTGAGCAAAATATTGATGCTGATCCAAC
*** * *
30416 TCCTTATGTGATGGATTTGAGCAAAATAAAAATGGTGATCCACC
1 TCCTTATGTGATGGATTTGAGCAAAATATTGATGCTGATCCAAC
* *
30460 TCATTCTGTGATGGAT
1 TCCTTATGTGATGGAT
30476 GAAGCAAGAT
Statistics
Matches: 136, Mismatches: 42, Indels: 16
0.70 0.22 0.08
Matches are distributed among these distances:
38 20 0.15
39 5 0.04
40 1 0.01
42 1 0.01
43 9 0.07
44 99 0.73
45 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.32
Consensus pattern (44 bp):
TCCTTATGTGATGGATTTGAGCAAAATATTGATGCTGATCCAAC
Found at i:31078 original size:73 final size:76
Alignment explanation
Indices: 30963--31101 Score: 212
Period size: 73 Copynumber: 1.9 Consensus size: 76
30953 AGAGAAGCTC
* * *
30963 TCTCGAGTGAGATAAAATTTCTTGTTTCAATGGAAAATTGTCTCAAGCGAAACGAAGTTGGTTTT
1 TCTCAAGTGAGATAAAATTTCTTGTTTCAAGGGAAAACTGTCTCAAGCGAAACGAAGTTGGTTTT
31028 AAGAAAAACCA
66 AAGAAAAACCA
* *
31039 TCTCAAGTGAGAT-AAA-TT-TTGTTTCAAGGGAAAACTGTCTCAAGCGAGATGAAGTTGGTTTT
1 TCTCAAGTGAGATAAAATTTCTTGTTTCAAGGGAAAACTGTCTCAAGCGAAACGAAGTTGGTTTT
31101 A
66 A
31102 TTATAAGGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
73 41 0.71
74 2 0.03
75 3 0.05
76 12 0.21
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.32
Consensus pattern (76 bp):
TCTCAAGTGAGATAAAATTTCTTGTTTCAAGGGAAAACTGTCTCAAGCGAAACGAAGTTGGTTTT
AAGAAAAACCA
Found at i:31080 original size:37 final size:36
Alignment explanation
Indices: 30984--31088 Score: 93
Period size: 36 Copynumber: 2.9 Consensus size: 36
30974 ATAAAATTTC
* * ** *
30984 TTGTTTCAATGGAAAATTGTCTCAAGCGAAACGAAGT
1 TTGTTTCAA-GGAAAACTGTCTCAAGCGAGATAAATT
* * * ** *
31021 TGGTTTTAAGAAAAACCATCTCAAGTGAGATAAATT
1 TTGTTTCAAGGAAAACTGTCTCAAGCGAGATAAATT
31057 TTGTTTCAAGGGAAAACTGTCTCAAGCGAGAT
1 TTGTTTCAA-GGAAAACTGTCTCAAGCGAGAT
31089 GAAGTTGGTT
Statistics
Matches: 50, Mismatches: 17, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
36 25 0.50
37 25 0.50
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (36 bp):
TTGTTTCAAGGAAAACTGTCTCAAGCGAGATAAATT
Found at i:31180 original size:36 final size:36
Alignment explanation
Indices: 31131--31518 Score: 169
Period size: 36 Copynumber: 11.6 Consensus size: 36
31121 AAAGATTTGT
* *
31131 GTTTCAAGAGAAACTATTTCAAGGGAGACAAAATTC
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* * ***
31167 GTTTCAAGGGAAACGT-TTTC-A-A-AG--TTTA-T-
1 GTTTCAAGAGAAAC-TATCTCAAGAGAGACAAAATTC
*
31196 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTC
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* * ***
31232 GTTTCAAGGGAAAC-ATTTTC-A-A-AG--TTTA-T-
1 GTTTCAAGAGAAACTA-TCTCAAGAGAGACAAAATTC
*
31261 GTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* *
31297 GTTTCAAGGGAAAC-AGTCTCAAGAGAGACAAAATTT
1 GTTTCAAGAGAAACTA-TCTCAAGAGAGACAAAATTC
* ***
31333 GTTTCAAGAGAAACAATCTC-A-A-AG--TTTA-T-
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* * *
31362 GATTCAAGAGAAACTGTCTCAAGGGAGACAAAATTC
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* * * * ***
31398 ATTTTAAGGGAAAC-ATTTTC-A-A-AG--TTTA-T-
1 GTTTCAAGAGAAACTA-TCTCAAGAGAGACAAAATTC
*
31427 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTC
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* * ** *
31463 ATTTCAAGGGAAACGGTCTCAAGAGAG--AAAATTT
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
*
31497 GTTTCAAGAGAAACAATCTCAA
1 GTTTCAAGAGAAACTATCTCAA
31519 AGTTTATGTT
Statistics
Matches: 254, Mismatches: 62, Indels: 74
0.65 0.16 0.19
Matches are distributed among these distances:
28 1 0.00
29 63 0.25
30 9 0.04
31 7 0.03
32 7 0.03
33 8 0.03
34 30 0.12
35 9 0.04
36 118 0.46
37 2 0.01
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.27
Consensus pattern (36 bp):
GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
Found at i:31218 original size:65 final size:65
Alignment explanation
Indices: 31106--31310 Score: 329
Period size: 65 Copynumber: 3.1 Consensus size: 65
31096 GTTTTATTAT
* * * * *
31106 AAGGGAAACGATCTCAAAGATTTGTGTTTCAAGAGAAACTATTTCAAGGGAGACAAAATTCGTTT
1 AAGGGAAACGTTTTCAAAG-TTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTCGTTT
31171 C
65 C
*
31172 AAGGGAAACGTTTTCAAAGTTTATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCGTTTC
1 AAGGGAAACGTTTTCAAAGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTCGTTTC
* *
31237 AAGGGAAACATTTTCAAAGTTTATGTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTCGTTTC
1 AAGGGAAACGTTTTCAAAGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTCGTTTC
31302 AAGGGAAAC
1 AAGGGAAAC
31311 AGTCTCAAGA
Statistics
Matches: 130, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
65 113 0.87
66 17 0.13
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.27
Consensus pattern (65 bp):
AAGGGAAACGTTTTCAAAGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTCGTTTC
Found at i:31301 original size:101 final size:101
Alignment explanation
Indices: 31196--31412 Score: 326
Period size: 101 Copynumber: 2.1 Consensus size: 101
31186 CAAAGTTTAT
* * * * *
31196 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGGGAAACATTTTCAAAGTTTAT
1 GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTCGTTTCAAGAGAAACAATCTCAAAGTTTAT
*
31261 GTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
66 GATTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
*
31297 GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTAT
1 GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTCGTTTCAAGAGAAACAATCTCAAAGTTTAT
* * *
31362 GATTCAAGAGAAACTGTCTCAAGGGAGACAAAATTC
66 GATTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
* *
31398 ATTTTAAGGGAAACA
1 GTTTCAAGGGAAACA
31413 TTTTCAAAGT
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 104 1.00
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.25
Consensus pattern (101 bp):
GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTCGTTTCAAGAGAAACAATCTCAAAGTTTAT
GATTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
Found at i:31339 original size:166 final size:166
Alignment explanation
Indices: 31131--31574 Score: 696
Period size: 166 Copynumber: 2.7 Consensus size: 166
31121 AAAGATTTGT
* * * * * ** *
31131 GTTTCAAGAGAAACTA-TTTCAAGGGAGACAAAATTCGTTTCAAGGGAAACGTTTTCAAAGTTTA
1 GTTTCAAGGGAAAC-AGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTA
*
31195 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGGGAAACATTTTCAAAGTTTA
65 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTCGTTTCAAGGGAAACATTTTCAAAGTTTA
31260 TGTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
130 TGTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
31297 GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTAT
1 GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTAT
* * *
31362 GATTCAAGAGAAACTGTCTCAAGGGAGACAAAATTCATTTTAAGGGAAACATTTTCAAAGTTTAT
66 GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTCGTTTCAAGGGAAACATTTTCAAAGTTTAT
* *
31427 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTC
131 GTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
* *
31463 ATTTCAAGGGAAACGGTCTCAAGAGAG--AAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTAT
1 GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTAT
* *
31526 GTTTCAGGAGATACTGTCTCAAGGGAGACAAAATTCGTTTCAAGGGAAA
66 GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTCGTTTCAAGGGAAA
31575 TGTTTTAAAT
Statistics
Matches: 256, Mismatches: 21, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
164 80 0.31
165 1 0.00
166 175 0.68
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (166 bp):
GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTAT
GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTCGTTTCAAGGGAAACATTTTCAAAGTTTAT
GTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
Found at i:31368 original size:65 final size:65
Alignment explanation
Indices: 31299--31476 Score: 266
Period size: 65 Copynumber: 2.7 Consensus size: 65
31289 CAAAATTCGT
* * ** *
31299 TTCAAGGGAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTATGA
1 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGAAACAATCTCAAAGTTTATGA
* * * * *
31364 TTCAAGAGAAACTGTCTCAAGGGAGACAAAATTCATTTTAAGGGAAACATTTTCAAAGTTTATGT
1 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGAAACAATCTCAAAGTTTATGA
31429 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGAAAC
1 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGAAAC
31477 GGTCTCAAGA
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 101 1.00
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.26
Consensus pattern (65 bp):
TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGAAACAATCTCAAAGTTTATGA
Found at i:31523 original size:99 final size:99
Alignment explanation
Indices: 31364--31717 Score: 357
Period size: 99 Copynumber: 3.6 Consensus size: 99
31354 AAGTTTATGA
* * * * * * * *
31364 TTCAAGAGAAACTGTCTCAAGGGAGACAAAATTCATTTTAAGGGAAACATTTTCAAAGTTTATGT
1 TTCAAGGGAAACGGTCTCAA--GAGAGAAAATTCGTTTCAAGAGAAACAATCTCAAAGTTTATGT
*
31429 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCAT
64 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCGT
*
31465 TTCAAGGGAAACGGTCTCAAGAGAGAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTATGTTT
1 TTCAAGGGAAACGGTCTCAAGAGAGAAAATTCGTTTCAAGAGAAACAATCTCAAAGTTTATGTTT
* * *
31530 CAGGAGATACTGTCTCAAGGGAGACAAAATTCGT
66 CAAGAGAAACTGTCTCAAGAGAGACAAAATTCGT
* ** * *** *
31564 TTCAAGGGAAA-TGT-T-------TTAAATTCGTTTCAAGGGAAATGTTTTCAAAGTTTATGTTT
1 TTCAAGGGAAACGGTCTCAAGAGAGAAAATTCGTTTCAAGAGAAACAATCTCAAAGTTTATGTTT
* * *
31620 CAAGAGAAACTATCTCAAGAGAAAAAAAAATTCGT
66 CAAGAGAAACTGTCTCAAGAG-AGACAAAATTCGT
* * *
31655 TTCAAGGGAAACGATCTCAAGAGAGACAAAATTTGTTTCTAGAGAAACAATCTCAAAGTTTAT
1 TTCAAGGGAAACGGTCTCAAGAGAG--AAAATTCGTTTCAAGAGAAACAATCTCAAAGTTTAT
31718 CAATTTTGTT
Statistics
Matches: 202, Mismatches: 39, Indels: 23
0.77 0.15 0.09
Matches are distributed among these distances:
90 50 0.25
91 22 0.11
92 1 0.00
93 1 0.00
97 1 0.00
98 2 0.01
99 79 0.39
101 18 0.09
102 28 0.14
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.29
Consensus pattern (99 bp):
TTCAAGGGAAACGGTCTCAAGAGAGAAAATTCGTTTCAAGAGAAACAATCTCAAAGTTTATGTTT
CAAGAGAAACTGTCTCAAGAGAGACAAAATTCGT
Found at i:31590 original size:25 final size:25
Alignment explanation
Indices: 31556--31605 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
31546 AAGGGAGACA
31556 AAATTCGTTTCAAGGGAAATGTTTT
1 AAATTCGTTTCAAGGGAAATGTTTT
31581 AAATTCGTTTCAAGGGAAATGTTTT
1 AAATTCGTTTCAAGGGAAATGTTTT
31606 CAAAGTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (25 bp):
AAATTCGTTTCAAGGGAAATGTTTT
Found at i:31693 original size:36 final size:37
Alignment explanation
Indices: 31615--31710 Score: 122
Period size: 36 Copynumber: 2.6 Consensus size: 37
31605 TCAAAGTTTA
*
31615 TGTTTCAAGAGAAACTATCTCAAGAGAAAAAAAAATT
1 TGTTTCAAGAGAAACAATCTCAAGAGAAAAAAAAATT
* * * * *
31652 CGTTTCAAGGGAAACGATCTCAAGAG-AGACAAAATT
1 TGTTTCAAGAGAAACAATCTCAAGAGAAAAAAAAATT
*
31688 TGTTTCTAGAGAAACAATCTCAA
1 TGTTTCAAGAGAAACAATCTCAA
31711 AGTTTATCAA
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
36 27 0.54
37 23 0.46
ACGTcount: A:0.45, C:0.15, G:0.17, T:0.24
Consensus pattern (37 bp):
TGTTTCAAGAGAAACAATCTCAAGAGAAAAAAAAATT
Found at i:32276 original size:16 final size:15
Alignment explanation
Indices: 32248--32278 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
32238 TGCAAATTTC
32248 ATGTGTCATGTATGT
1 ATGTGTCATGTATGT
32263 ATGTGTCGATGTATGT
1 ATGTGTC-ATGTATGT
32279 GTGAGGAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.19, C:0.06, G:0.29, T:0.45
Consensus pattern (15 bp):
ATGTGTCATGTATGT
Found at i:32662 original size:17 final size:17
Alignment explanation
Indices: 32640--32682 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
32630 CTGCTATTTT
*
32640 AATCTTTGATAGCTGTA
1 AATCTTTGATAGCTGCA
32657 AATCTTTGATAGCTGCA
1 AATCTTTGATAGCTGCA
32674 AATCTTTGA
1 AATCTTTGA
32683 CAAGATCGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (17 bp):
AATCTTTGATAGCTGCA
Found at i:34697 original size:21 final size:21
Alignment explanation
Indices: 34655--34697 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
34645 TTTCTGGGCT
* *
34655 AGGGGAATCGATACCCATTCA
1 AGGGGAACCGATACCCACTCA
*
34676 AGGGGAACCGATACCCCCTCA
1 AGGGGAACCGATACCCACTCA
34697 A
1 A
34698 ACGAACCAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.30, G:0.23, T:0.14
Consensus pattern (21 bp):
AGGGGAACCGATACCCACTCA
Found at i:34770 original size:23 final size:22
Alignment explanation
Indices: 34729--34775 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
34719 GTCATGGGGG
* *
34729 AACCGATACCCCCACAGGAGGA
1 AACCGATACCCCCAAAGGAAGA
*
34751 AACCGATTCCCCCTAAAGGAAGA
1 AACCGATACCCCC-AAAGGAAGA
34774 AA
1 AA
34776 AGAATATTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.40, C:0.32, G:0.19, T:0.09
Consensus pattern (22 bp):
AACCGATACCCCCAAAGGAAGA
Found at i:35269 original size:2 final size:2
Alignment explanation
Indices: 35262--35308 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
35252 TGAATCATTG
35262 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
35304 AT AT A
1 AT AT A
35309 AGATAACCAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:36362 original size:23 final size:23
Alignment explanation
Indices: 36329--36396 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
36319 ATTATTATAT
36329 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
36352 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
* *
36375 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTCTACG
36397 AGCTGTGGTG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:47000 original size:14 final size:14
Alignment explanation
Indices: 46956--47001 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
46946 AAATATTCAT
46956 AAAATTAAAT-ACA
1 AAAATTAAATGACA
*
46969 AAAATAGTAAA-GATA
1 AAAAT--TAAATGACA
46984 AAAATTAAATGACA
1 AAAATTAAATGACA
46998 AAAA
1 AAAA
47002 AAATAAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
13 9 0.33
14 7 0.26
15 11 0.41
ACGTcount: A:0.70, C:0.04, G:0.07, T:0.20
Consensus pattern (14 bp):
AAAATTAAATGACA
Found at i:47052 original size:21 final size:20
Alignment explanation
Indices: 46997--47054 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
46987 ATTAAATGAC
*
46997 AAAA-AAAATAAATATATTTT
1 AAAATAAAATAAAT-TATTAT
47017 AAAATACTAAA-AAATTATTAT
1 AAAATA--AAATAAATTATTAT
47038 AAAATTAAAATAAATTA
1 AAAA-TAAAATAAATTA
47055 AATATATTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
20 7 0.22
21 16 0.50
22 6 0.19
23 3 0.09
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAATAAAATAAATTATTAT
Found at i:47503 original size:16 final size:18
Alignment explanation
Indices: 47477--47511 Score: 56
Period size: 16 Copynumber: 2.1 Consensus size: 18
47467 AATGTTGATG
47477 ATGTGACTATATAT-TAT
1 ATGTGACTATATATGTAT
47494 ATGT-ACTATATATGTAT
1 ATGTGACTATATATGTAT
47511 A
1 A
47512 ATATATATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.46
Consensus pattern (18 bp):
ATGTGACTATATATGTAT
Found at i:47647 original size:14 final size:14
Alignment explanation
Indices: 47624--47700 Score: 57
Period size: 14 Copynumber: 5.4 Consensus size: 14
47614 AAATATATAT
47624 TTTAATTTTTTTAAA
1 TTTAA-TTTTTTAAA
**
47639 TTTAA-TTTTTAGT
1 TTTAATTTTTTAAA
* *
47652 TTTAATATTTTATA
1 TTTAATTTTTTAAA
47666 TTTAATTTTTTGAATA
1 TTTAATTTTTT-AA-A
* * *
47682 TTCAATATTTTATA
1 TTTAATTTTTTAAA
47696 TTTAA
1 TTTAA
47701 GACTTTACAT
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
13 11 0.23
14 20 0.42
15 7 0.15
16 10 0.21
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (14 bp):
TTTAATTTTTTAAA
Found at i:47649 original size:13 final size:13
Alignment explanation
Indices: 47631--47675 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
47621 TATTTTAATT
47631 TTTTTAAATTTAA
1 TTTTTAAATTTAA
**
47644 TTTTTAGTTTTAA
1 TTTTTAAATTTAA
*
47657 TATTTTATATTTAA
1 T-TTTTAAATTTAA
47671 TTTTT
1 TTTTT
47676 TGAATATTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (13 bp):
TTTTTAAATTTAA
Found at i:48044 original size:21 final size:22
Alignment explanation
Indices: 48010--48050 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
48000 GCGAAGAAAA
* *
48010 TATTTTATGTAATAT-ATAATT
1 TATTTAATGAAATATCATAATT
48031 TATTTAATGAAATATCATAA
1 TATTTAATGAAATATCATAA
48051 AAGTGATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (22 bp):
TATTTAATGAAATATCATAATT
Found at i:56357 original size:19 final size:18
Alignment explanation
Indices: 56329--56366 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
56319 GTTCACCCGC
*
56329 ATATTTGGTATCGATACA
1 ATATTTGGTATCAATACA
56347 ATATGTTGGTATCAATACA
1 ATAT-TTGGTATCAATACA
56366 A
1 A
56367 AGCCTCCCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (18 bp):
ATATTTGGTATCAATACA
Found at i:59196 original size:14 final size:14
Alignment explanation
Indices: 59185--59223 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
59175 TAAGTATACT
59185 TATATATA--TATA
1 TATATATACTTATA
59197 TATATATACTTATA
1 TATATATACTTATA
*
59211 TGTATATACTTAT
1 TATATATACTTAT
59224 TCTCTCTCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 8 0.33
14 16 0.67
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (14 bp):
TATATATACTTATA
Found at i:59861 original size:15 final size:15
Alignment explanation
Indices: 59841--59871 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
59831 GATAAAACTT
59841 CCCCCATCCCCATCC
1 CCCCCATCCCCATCC
59856 CCCCCATCCCCATCC
1 CCCCCATCCCCATCC
59871 C
1 C
59872 GTGGGTGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.74, G:0.00, T:0.13
Consensus pattern (15 bp):
CCCCCATCCCCATCC
Found at i:59964 original size:2 final size:2
Alignment explanation
Indices: 59957--59986 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
59947 GTCACCCCTA
59957 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
59987 CATTACCCAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60410 original size:2 final size:2
Alignment explanation
Indices: 60403--60429 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
60393 TCTAAATTTA
60403 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
60430 CTTATCATTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:60505 original size:15 final size:15
Alignment explanation
Indices: 60485--60525 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
60475 ATCGGTGTGT
*
60485 AAGTATATATATGTA-
1 AAGTATATA-AAGTAC
60500 AAGTATATAAAGTAC
1 AAGTATATAAAGTAC
60515 AAGTATATAAA
1 AAGTATATAAA
60526 CTATATAGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 4 0.17
15 20 0.83
ACGTcount: A:0.54, C:0.02, G:0.12, T:0.32
Consensus pattern (15 bp):
AAGTATATAAAGTAC
Found at i:60623 original size:13 final size:13
Alignment explanation
Indices: 60607--60647 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
60597 TTTGACCGAC
*
60607 TGATTTGATTAGT
1 TGATTTGATTAAT
**
60620 TGATTTGAGAAAT
1 TGATTTGATTAAT
60633 TGATTTGATTAAT
1 TGATTTGATTAAT
60646 TG
1 TG
60648 TTTATATAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.29, C:0.00, G:0.22, T:0.49
Consensus pattern (13 bp):
TGATTTGATTAAT
Found at i:61496 original size:16 final size:15
Alignment explanation
Indices: 61439--61519 Score: 78
Period size: 14 Copynumber: 5.4 Consensus size: 15
61429 AGTGTGTGTA
*
61439 TATATATATATATA-
1 TATATATATATAAAG
*
61453 TATATATATATATA-
1 TATATATATATAAAG
61467 TATATATAGTATAAAG
1 TATATATA-TATAAAG
61483 TATATA-ATATATAAG
1 TATATATATATA-AAG
* *
61498 CATATGTATATATAAG
1 TATATATATATA-AAG
61514 TATATA
1 TATATA
61520 CATAACTATA
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
14 26 0.45
15 13 0.22
16 19 0.33
ACGTcount: A:0.49, C:0.01, G:0.06, T:0.43
Consensus pattern (15 bp):
TATATATATATAAAG
Found at i:61511 original size:2 final size:2
Alignment explanation
Indices: 61373--61495 Score: 87
Period size: 2 Copynumber: 62.0 Consensus size: 2
61363 AACTATAAAC
* *
61373 TA TA TA TA TA TA TA TA TA -A GA T- TA TA AA CTA TA -A TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA
* * * * *
61413 TA -A AA GTA TA TA CA TA -A GTG TG TG TA TA TA TA TA TA TA TA TA
1 TA TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
*
61455 TA TA TA TA TA TA TA TA TA TA GTA TA AA GTA TA TA -A TA TA TA
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA
61496 AGCATATGTA
Statistics
Matches: 100, Mismatches: 10, Indels: 22
0.76 0.08 0.17
Matches are distributed among these distances:
1 6 0.06
2 89 0.89
3 5 0.05
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.42
Consensus pattern (2 bp):
TA
Found at i:61519 original size:12 final size:12
Alignment explanation
Indices: 61373--61544 Score: 87
Period size: 12 Copynumber: 14.4 Consensus size: 12
61363 AACTATAAAC
61373 TATATAT-A-TA
1 TATATATAAGTA
61383 TATATATAAGATTA
1 TATATATAAG--TA
*
61397 TAAACTATAA-TA
1 TATA-TATAAGTA
*
61409 TATATAAAAGTA
1 TATATATAAGTA
* *
61421 TATACATAAGTG
1 TATATATAAGTA
* *
61433 TGTGTAT-A-TA
1 TATATATAAGTA
61443 TATATAT-A-TA
1 TATATATAAGTA
61453 TATATATATA-TA
1 TATATATA-AGTA
61465 TATATATATAGTA
1 TATATATA-AGTA
*
61478 TAAAGTAT-A-TA
1 TATA-TATAAGTA
61489 -ATATATAAGCATA
1 TATATATAAG--TA
61502 TGTATATATAAGTA
1 --TATATATAAGTA
* *
61516 TATACATAACTA
1 TATATATAAGTA
*
61528 TATTTATAAGTA
1 TATATATAAGTA
61540 TATAT
1 TATAT
61545 GTATGTTGTA
Statistics
Matches: 125, Mismatches: 20, Indels: 32
0.71 0.11 0.18
Matches are distributed among these distances:
9 3 0.02
10 26 0.21
11 8 0.06
12 57 0.46
13 7 0.06
14 10 0.08
15 5 0.04
16 9 0.07
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.42
Consensus pattern (12 bp):
TATATATAAGTA
Found at i:61718 original size:23 final size:22
Alignment explanation
Indices: 61685--61732 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
61675 CTTTTATATA
61685 TATATTAAAATT-TTAAGTTAAAT
1 TATATTAAAATTATTAA-TT-AAT
*
61708 TATATTTAAATTATTAATTAAT
1 TATATTAAAATTATTAATTAAT
61730 TAT
1 TAT
61733 TGCATAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 6 0.26
23 13 0.57
24 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
TATATTAAAATTATTAATTAAT
Found at i:65983 original size:24 final size:25
Alignment explanation
Indices: 65933--65989 Score: 89
Period size: 24 Copynumber: 2.3 Consensus size: 25
65923 AAATGTTAGT
65933 AAGTTAGTAAGAAAAATAAAAATAA
1 AAGTTAGTAAGAAAAATAAAAATAA
* *
65958 AAGTTAGTATGAACAAT-AAAATAA
1 AAGTTAGTAAGAAAAATAAAAATAA
65982 AAGTTAGT
1 AAGTTAGT
65990 GGTTAGCAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
24 15 0.50
25 15 0.50
ACGTcount: A:0.60, C:0.02, G:0.14, T:0.25
Consensus pattern (25 bp):
AAGTTAGTAAGAAAAATAAAAATAA
Found at i:66123 original size:120 final size:116
Alignment explanation
Indices: 65980--66289 Score: 435
Period size: 120 Copynumber: 2.6 Consensus size: 116
65970 ACAATAAAAT
65980 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCCTGATCGGGTCACCA
1 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCC-GATCGGGTCACCA
* *
66045 CAAGGTCGAATATAATAATGCAAACAAATATATAAAAATAA-AATAAATAACATAA
65 CAAGGTCGAATAGAATAATGCAAACAAATATATAAAAA-AATAA-AAA-AATA-AA
* * * *
66100 AAAAGTTAGTGGTTAGCACAGTCCGAACCATAACAATGTGGGTCTTACCCCGAATCGGATCACCA
1 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCCG-ATCGGGTCACCA
* *
66165 C-AGGTTGAATAGAATAATGTAAACAAATATATAAAAAAATAAAAAAATAAA
65 CAAGGTCGAATAGAATAATGCAAACAAATATATAAAAAAATAAAAAAATAAA
* * *
66216 AAAAGTTAATGGTTAGTAGAGTCCAAACCATAATAATGTGGGTATTACCCCGGATCGGGTCACCA
1 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCC-GATCGGGTCACCA
*
66281 TAAGGTCGA
65 CAAGGTCGA
66290 GTAATAAGAG
Statistics
Matches: 169, Mismatches: 17, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
116 58 0.34
117 10 0.06
118 5 0.03
119 36 0.21
120 60 0.36
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.23
Consensus pattern (116 bp):
AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCCGATCGGGTCACCAC
AAGGTCGAATAGAATAATGCAAACAAATATATAAAAAAATAAAAAAATAAA
Found at i:66211 original size:9 final size:8
Alignment explanation
Indices: 66195--66219 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
66185 AAACAAATAT
66195 ATAAAAAA
1 ATAAAAAA
66203 ATAAAAAA
1 ATAAAAAA
66211 ATAAAAAA
1 ATAAAAAA
66219 A
1 A
66220 GTTAATGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
ATAAAAAA
Found at i:66254 original size:116 final size:119
Alignment explanation
Indices: 65980--66289 Score: 441
Period size: 116 Copynumber: 2.6 Consensus size: 119
65970 ACAATAAAAT
65980 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCCTGATCGGGTCACCA
1 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCC-GATCGGGTCACCA
*
66045 CAAGGTCGAATATAATAATGCAAACAAATATATAAAAATAAAATAAATAACATAA
65 CAAGGTCGAATAGAATAATGCAAACAAATATATAAAAATAAAATAAATAACATAA
* * * *
66100 AAAAGTTAGTGGTTAGCACAGTCCGAACCATAACAATGTGGGTCTTACCCCGAATCGGATCACCA
1 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCCG-ATCGGGTCACCA
* * *
66165 C-AGGTTGAATAGAATAATGTAAACAAATATAT--AAA-AAAATAAA-AAAATAAA
65 CAAGGTCGAATAGAATAATGCAAACAAATATATAAAAATAAAATAAATAACAT-AA
* * *
66216 AAAAGTTAATGGTTAGTAGAGTCCAAACCATAATAATGTGGGTATTACCCCGGATCGGGTCACCA
1 AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCC-GATCGGGTCACCA
*
66281 TAAGGTCGA
65 CAAGGTCGA
66290 GTAATAAGAG
Statistics
Matches: 169, Mismatches: 17, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
115 4 0.02
116 66 0.39
117 10 0.06
119 29 0.17
120 60 0.36
ACGTcount: A:0.43, C:0.16, G:0.18, T:0.23
Consensus pattern (119 bp):
AAAAGTTAGTGGTTAGCAGAGTCCAAACCATAATAATGTGGGTCTTACCCCGATCGGGTCACCAC
AAGGTCGAATAGAATAATGCAAACAAATATATAAAAATAAAATAAATAACATAA
Found at i:67456 original size:44 final size:44
Alignment explanation
Indices: 67390--67736 Score: 168
Period size: 44 Copynumber: 7.9 Consensus size: 44
67380 ATAATTTCAG
* * * * *
67390 TGTTGATCTACCTCATTCTGTGATAGAATCGAGCAAAATATTGA
1 TGTTGATCCAACTCCTTATGTGATAGAATTGAGCAAAATATTGA
* * * ** ***
67434 TGTTTATCCAACTCCTTATGTGATGGATTTGAGTGAAATAAAAA
1 TGTTGATCCAACTCCTTATGTGATAGAATTGAGCAAAATATTGA
* * * * *
67478 TGTCGATCC-ACATCCTT-TTTAATGGAA-T---CAAATGATATGTCGG
1 TGTTGATCCAAC-TCCTTATGTGATAGAATTGAGCAAA--ATAT-T-GA
* * *
67521 TGCTGAT-CTACATCCTTCTGTGATAGAATTGAGCAAAATATTGA
1 TGTTGATCCAAC-TCCTTATGTGATAGAATTGAGCAAAATATTGA
* * * * * ***
67565 TGCTGATCCAACTCCTTATGCGATGGATTTGAGCGAAATAAAAA
1 TGTTGATCCAACTCCTTATGTGATAGAATTGAGCAAAATATTGA
* * * * * * * *
67609 TGTCGATCCAACTCCTTCTGTGATAGAATTGAACGAGATGTCGG
1 TGTTGATCCAACTCCTTATGTGATAGAATTGAGCAAAATATTGA
* * * * * * *
67653 TTTTGATCTACCTCATTCTGTGATAGAATCGAGCAAAAAATTGA
1 TGTTGATCCAACTCCTTATGTGATAGAATTGAGCAAAATATTGA
* * *
67697 TGCTGATCCAACTCCTTATGTGATGGATTTGAGCAAAATA
1 TGTTGATCCAACTCCTTATGTGATAGAATTGAGCAAAATA
67737 AAAATGGTGA
Statistics
Matches: 216, Mismatches: 75, Indels: 24
0.69 0.24 0.08
Matches are distributed among these distances:
39 2 0.01
41 3 0.01
42 2 0.01
43 22 0.10
44 174 0.81
45 5 0.02
46 4 0.02
48 4 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (44 bp):
TGTTGATCCAACTCCTTATGTGATAGAATTGAGCAAAATATTGA
Found at i:67705 original size:132 final size:132
Alignment explanation
Indices: 67389--67764 Score: 533
Period size: 132 Copynumber: 2.9 Consensus size: 132
67379 CATAATTTCA
* *
67389 GTGTTGATCTACCTCATTCTGTGATAGAATCGAGCAAAATATTGATGTTTATCCAACTCCTTATG
1 GTGTTGATCTACCTCATTCTGTGATAGAATCGAGCAAAATATTGATGCTGATCCAACTCCTTATG
* * * * * *
67454 TGATGGATTTGAGTGAAATAAAAATGTCGATCC-ACATCCTT-TTTAATGGAATCAAATGATATG
66 TGATGGATTTGAGCGAAATAAAAATGTCGATCCAAC-TCCTTCTGTGATAGAATCAAACGAGATG
67517 TCG
130 TCG
* * * *
67520 GTGCTGATCTACATCCTTCTGTGATAGAATTGAGCAAAATATTGATGCTGATCCAACTCCTTATG
1 GTGTTGATCTACCTCATTCTGTGATAGAATCGAGCAAAATATTGATGCTGATCCAACTCCTTATG
* **
67585 CGATGGATTTGAGCGAAATAAAAATGTCGATCCAACTCCTTCTGTGATAGAATTGAACGAGATGT
66 TGATGGATTTGAGCGAAATAAAAATGTCGATCCAACTCCTTCTGTGATAGAATCAAACGAGATGT
67650 CG
131 CG
* *
67652 GTTTTGATCTACCTCATTCTGTGATAGAATCGAGCAAAAAATTGATGCTGATCCAACTCCTTATG
1 GTGTTGATCTACCTCATTCTGTGATAGAATCGAGCAAAATATTGATGCTGATCCAACTCCTTATG
* * *
67717 TGATGGATTTGAGCAAAATAAAAATGGT-GATCCACCTCATTCTGTGAT
66 TGATGGATTTGAGCGAAATAAAAAT-GTCGATCCAACTCCTTCTGTGAT
67765 GGATGAAGCA
Statistics
Matches: 217, Mismatches: 25, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
131 95 0.44
132 120 0.55
133 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (132 bp):
GTGTTGATCTACCTCATTCTGTGATAGAATCGAGCAAAATATTGATGCTGATCCAACTCCTTATG
TGATGGATTTGAGCGAAATAAAAATGTCGATCCAACTCCTTCTGTGATAGAATCAAACGAGATGT
CG
Found at i:67748 original size:44 final size:44
Alignment explanation
Indices: 67533--67764 Score: 171
Period size: 44 Copynumber: 5.3 Consensus size: 44
67523 CTGATCTACA
**
67533 TCCTTCTGTGATAGAATTGAGCAAAATATTGATGCTGATCCAAC
1 TCCTTCTGTGATAGAATTGAGCAAAATAAAGATGCTGATCCAAC
* * * * * *
67577 TCCTTATGCGATGGATTTGAGCGAAATAAAAATG-TCGATCCAAC
1 TCCTTCTGTGATAGAATTGAGCAAAATAAAGATGCT-GATCCAAC
* * * *** * ** * *
67621 TCCTTCTGTGATAGAATTGAACGAGATGTCGGTTTTGATCTACC
1 TCCTTCTGTGATAGAATTGAGCAAAATAAAGATGCTGATCCAAC
* * *
67665 TCATTCTGTGATAGAATCGAGCAAAA-AATTGATGCTGATCCAAC
1 TCCTTCTGTGATAGAATTGAGCAAAATAA-AGATGCTGATCCAAC
* * * * * *
67709 TCCTTATGTGATGGATTTGAGCAAAATAAAAATGGTGATCCACC
1 TCCTTCTGTGATAGAATTGAGCAAAATAAAGATGCTGATCCAAC
*
67753 TCATTCTGTGAT
1 TCCTTCTGTGAT
67765 GGATGAAGCA
Statistics
Matches: 138, Mismatches: 46, Indels: 8
0.72 0.24 0.04
Matches are distributed among these distances:
43 1 0.01
44 134 0.97
45 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (44 bp):
TCCTTCTGTGATAGAATTGAGCAAAATAAAGATGCTGATCCAAC
Found at i:68371 original size:73 final size:76
Alignment explanation
Indices: 68256--68394 Score: 212
Period size: 73 Copynumber: 1.9 Consensus size: 76
68246 AGAGAAGCTC
* * *
68256 TCTCGAGTGAGATAAAATTTCTTGTTTCAATGGAAAATTGTCTCAAGCGAAACGAAGTTGGTTTT
1 TCTCAAGTGAGATAAAATTTCTTGTTTCAAGGGAAAACTGTCTCAAGCGAAACGAAGTTGGTTTT
68321 AAGAAAAACCA
66 AAGAAAAACCA
* *
68332 TCTCAAGTGAGAT-AAA-TT-TTGTTTCAAGGGAAAACTGTCTCAAGCGAGATGAAGTTGGTTTT
1 TCTCAAGTGAGATAAAATTTCTTGTTTCAAGGGAAAACTGTCTCAAGCGAAACGAAGTTGGTTTT
68394 A
66 A
68395 TTATAAGGGA
Statistics
Matches: 58, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
73 41 0.71
74 2 0.03
75 3 0.05
76 12 0.21
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.32
Consensus pattern (76 bp):
TCTCAAGTGAGATAAAATTTCTTGTTTCAAGGGAAAACTGTCTCAAGCGAAACGAAGTTGGTTTT
AAGAAAAACCA
Found at i:68373 original size:37 final size:36
Alignment explanation
Indices: 68277--68381 Score: 93
Period size: 36 Copynumber: 2.9 Consensus size: 36
68267 ATAAAATTTC
* * ** *
68277 TTGTTTCAATGGAAAATTGTCTCAAGCGAAACGAAGT
1 TTGTTTCAA-GGAAAACTGTCTCAAGCGAGATAAATT
* * * ** *
68314 TGGTTTTAAGAAAAACCATCTCAAGTGAGATAAATT
1 TTGTTTCAAGGAAAACTGTCTCAAGCGAGATAAATT
68350 TTGTTTCAAGGGAAAACTGTCTCAAGCGAGAT
1 TTGTTTCAA-GGAAAACTGTCTCAAGCGAGAT
68382 GAAGTTGGTT
Statistics
Matches: 50, Mismatches: 17, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
36 25 0.50
37 25 0.50
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (36 bp):
TTGTTTCAAGGAAAACTGTCTCAAGCGAGATAAATT
Found at i:68473 original size:36 final size:36
Alignment explanation
Indices: 68424--68981 Score: 202
Period size: 36 Copynumber: 16.6 Consensus size: 36
68414 AAAGATTTGT
* *
68424 GTTTCAAGAGAAACTATTTCAAGGGAGACAAAATTC
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* * ***
68460 GTTTCAAGGGAAACGT-TTTC-A-A-AG--TTTA-T-
1 GTTTCAAGAGAAAC-TATCTCAAGAGAGACAAAATTC
*
68489 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTC
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* * ***
68525 GTTTCAAGGGAAAC-ATTTTC-A-A-AG--TTTA-T-
1 GTTTCAAGAGAAACTA-TCTCAAGAGAGACAAAATTC
*
68554 GTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* *
68590 GTTTCAAGGGAAAC-AGTCTCAAGAGAGACAAAATTT
1 GTTTCAAGAGAAACTA-TCTCAAGAGAGACAAAATTC
* ***
68626 GTTTCAAGAGAAACAATCTC-A-A-AG--TTTA-T-
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* * *
68655 GATTCAAGAGAAACTGTCTCAAGGGAGACAAAATTC
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* * * * ***
68691 ATTTTAAGGGAAAC-ATTTTC-A-A-AG--TTTA-T-
1 GTTTCAAGAGAAACTA-TCTCAAGAGAGACAAAATTC
*
68720 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTC
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* * ** * *
68756 ATTTCAAGGGAAACGGTCTCAAGAGAGAGAAAATTT
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* ***
68792 GTTTCAAGAGAAACAATCTC-A-A-AG--TTTA-T-
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* * * *
68821 GTTTCAGGAGATACTGTCTCAAGGGAGACAAAATTC
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* * * ***
68857 GTTTCAAGGGAAA-TGTTTTC-A-A-AG--TTTA-T-
1 GTTTCAAGAGAAACT-ATCTCAAGAGAGACAAAATTC
* *
68886 GTTTCAAGAGAAACTATCTCAAGAGAAAAAAAAAATTC
1 GTTTCAAGAGAAACTATCTCAAGAG--AGACAAAATTC
* * *
68924 GTTTCAAGGGAAACGATCTCAAGAGAGACAAAATTT
1 GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
* *
68960 GTTTCTAGAGAAACAATCTCAA
1 GTTTCAAGAGAAACTATCTCAA
68982 AGTTTATCAA
Statistics
Matches: 370, Mismatches: 98, Indels: 108
0.64 0.17 0.19
Matches are distributed among these distances:
28 1 0.00
29 94 0.25
30 14 0.04
31 10 0.03
32 9 0.02
33 12 0.03
34 9 0.02
35 13 0.04
36 182 0.49
37 3 0.01
38 23 0.06
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.27
Consensus pattern (36 bp):
GTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTC
Found at i:68511 original size:65 final size:65
Alignment explanation
Indices: 68399--68603 Score: 329
Period size: 65 Copynumber: 3.1 Consensus size: 65
68389 GTTTTATTAT
* * * * *
68399 AAGGGAAACGATCTCAAAGATTTGTGTTTCAAGAGAAACTATTTCAAGGGAGACAAAATTCGTTT
1 AAGGGAAACGTTTTCAAAG-TTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTCGTTT
68464 C
65 C
*
68465 AAGGGAAACGTTTTCAAAGTTTATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCGTTTC
1 AAGGGAAACGTTTTCAAAGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTCGTTTC
* *
68530 AAGGGAAACATTTTCAAAGTTTATGTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTCGTTTC
1 AAGGGAAACGTTTTCAAAGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTCGTTTC
68595 AAGGGAAAC
1 AAGGGAAAC
68604 AGTCTCAAGA
Statistics
Matches: 130, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
65 113 0.87
66 17 0.13
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.27
Consensus pattern (65 bp):
AAGGGAAACGTTTTCAAAGTTTATGTTTCAAGAGAAACTATCTCAAGAGAGACAAAATTCGTTTC
Found at i:68594 original size:101 final size:101
Alignment explanation
Indices: 68489--68705 Score: 326
Period size: 101 Copynumber: 2.1 Consensus size: 101
68479 CAAAGTTTAT
* * * * *
68489 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGGGAAACATTTTCAAAGTTTAT
1 GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTCGTTTCAAGAGAAACAATCTCAAAGTTTAT
*
68554 GTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
66 GATTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
*
68590 GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTAT
1 GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTCGTTTCAAGAGAAACAATCTCAAAGTTTAT
* * *
68655 GATTCAAGAGAAACTGTCTCAAGGGAGACAAAATTC
66 GATTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
* *
68691 ATTTTAAGGGAAACA
1 GTTTCAAGGGAAACA
68706 TTTTCAAAGT
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 104 1.00
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.25
Consensus pattern (101 bp):
GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTCGTTTCAAGAGAAACAATCTCAAAGTTTAT
GATTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
Found at i:68632 original size:166 final size:166
Alignment explanation
Indices: 68424--68988 Score: 873
Period size: 166 Copynumber: 3.4 Consensus size: 166
68414 AAAGATTTGT
* * * * * ** *
68424 GTTTCAAGAGAAACTA-TTTCAAGGGAGACAAAATTCGTTTCAAGGGAAACGTTTTCAAAGTTTA
1 GTTTCAAGGGAAAC-AGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTA
*
68488 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCGTTTCAAGGGAAACATTTTCAAAGTTTA
65 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTCGTTTCAAGGGAAACATTTTCAAAGTTTA
68553 TGTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
130 TGTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
68590 GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTAT
1 GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTAT
* * *
68655 GATTCAAGAGAAACTGTCTCAAGGGAGACAAAATTCATTTTAAGGGAAACATTTTCAAAGTTTAT
66 GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTCGTTTCAAGGGAAACATTTTCAAAGTTTAT
* *
68720 GTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTC
131 GTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
* * *
68756 ATTTCAAGGGAAACGGTCTCAAGAGAGAGAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTAT
1 GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTAT
* * **
68821 GTTTCAGGAGATACTGTCTCAAGGGAGACAAAATTCGTTTCAAGGGAAATGTTTTCAAAGTTTAT
66 GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTCGTTTCAAGGGAAACATTTTCAAAGTTTAT
*
68886 GTTTCAAGAGAAACTATCTCAAGAGAAAAAAAAAATTC
131 GTTTCAAGAGAAACTATCTCAAGAG--AAACAAAATTC
*
68924 GTTTCAAGGGAAAC-GATCTCAAGAGAGACAAAATTTGTTTCTAGAGAAACAATCTCAAAGTTTA
1 GTTTCAAGGGAAACAG-TCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTA
68988 T
65 T
68989 CAATTTTGTT
Statistics
Matches: 365, Mismatches: 30, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
165 1 0.00
166 294 0.81
167 1 0.00
168 69 0.19
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.27
Consensus pattern (166 bp):
GTTTCAAGGGAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTAT
GTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTCGTTTCAAGGGAAACATTTTCAAAGTTTAT
GTTTCAAGAGAAACTATCTCAAGAGAAACAAAATTC
Found at i:68661 original size:65 final size:65
Alignment explanation
Indices: 68592--68769 Score: 266
Period size: 65 Copynumber: 2.7 Consensus size: 65
68582 CAAAATTCGT
* * ** *
68592 TTCAAGGGAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTATGA
1 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGAAACAATCTCAAAGTTTATGA
* * * * *
68657 TTCAAGAGAAACTGTCTCAAGGGAGACAAAATTCATTTTAAGGGAAACATTTTCAAAGTTTATGT
1 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGAAACAATCTCAAAGTTTATGA
68722 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGAAAC
1 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGAAAC
68770 GGTCTCAAGA
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 101 1.00
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.26
Consensus pattern (65 bp):
TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCATTTCAAGGGAAACAATCTCAAAGTTTATGA
Found at i:68762 original size:101 final size:101
Alignment explanation
Indices: 68657--68869 Score: 300
Period size: 101 Copynumber: 2.1 Consensus size: 101
68647 AAGTTTATGA
* * * * * * *
68657 TTCAAGAGAAACTGTCTCAAGGGAGACAAAATTCATTTTAAGGGAAACATTTTCAAAGTTTATGT
1 TTCAAGGGAAACGGTCTCAAGAGAGACAAAATTCATTTCAAGAGAAACAATCTCAAAGTTTATGT
68722 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCAT
66 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCAT
* **
68758 TTCAAGGGAAACGGTCTCAAGAGAGAGAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTATGT
1 TTCAAGGGAAACGGTCTCAAGAGAGACAAAATTCATTTCAAGAGAAACAATCTCAAAGTTTATGT
* * * *
68823 TTCAGGAGATACTGTCTCAAGGGAGACAAAATTCGT
66 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCAT
68859 TTCAAGGGAAA
1 TTCAAGGGAAA
68870 TGTTTTCAAA
Statistics
Matches: 98, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 98 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (101 bp):
TTCAAGGGAAACGGTCTCAAGAGAGACAAAATTCATTTCAAGAGAAACAATCTCAAAGTTTATGT
TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTCAT
Found at i:68861 original size:65 final size:65
Alignment explanation
Indices: 68757--68945 Score: 216
Period size: 65 Copynumber: 2.9 Consensus size: 65
68747 ACAAAATTCA
* * * * * * *
68757 TTTCAAGGGAAACGGTCTCAAGAGAGAGAAAATTTGTTTCAAGAGAAACAATCTCAAAGTTTATG
1 TTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTCGTTTCAAGGGAAACGATCTCAAAGTTTATG
* * * * * *
68822 TTTCAGGAGATACTGTCTCAAGGGAGACAAAATTCGTTTCAAGGGAAATGTTTTCAAAGTTTATG
1 TTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTCGTTTCAAGGGAAACGATCTCAAAGTTTATG
* * *
68887 TTTCAAGAGAAACTATCTCAAGAGAAAAAAAAAATTCGTTTCAAGGGAAACGATCTCAA
1 TTTCAAGAGAAACTGTCTCAAG-G-GAGAAAAAATTCGTTTCAAGGGAAACGATCTCAA
68946 GAGAGACAAA
Statistics
Matches: 101, Mismatches: 21, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
65 72 0.71
66 1 0.01
67 28 0.28
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (65 bp):
TTTCAAGAGAAACTGTCTCAAGGGAGAAAAAATTCGTTTCAAGGGAAACGATCTCAAAGTTTATG
Found at i:69547 original size:16 final size:15
Alignment explanation
Indices: 69519--69549 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
69509 TGCAAATTTC
69519 ATGTGTCATGTATGT
1 ATGTGTCATGTATGT
69534 ATGTGTCGATGTATGT
1 ATGTGTC-ATGTATGT
69550 GTGAGGAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.19, C:0.06, G:0.29, T:0.45
Consensus pattern (15 bp):
ATGTGTCATGTATGT
Found at i:69933 original size:17 final size:17
Alignment explanation
Indices: 69911--69953 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
69901 CTGCTATTTT
*
69911 AATCTTTGATAGCTGTA
1 AATCTTTGATAGCTGCA
69928 AATCTTTGATAGCTGCA
1 AATCTTTGATAGCTGCA
69945 AATCTTTGA
1 AATCTTTGA
69954 CAAGATCGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (17 bp):
AATCTTTGATAGCTGCA
Found at i:72040 original size:23 final size:22
Alignment explanation
Indices: 71999--72045 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
71989 GTCATGGGGG
* *
71999 AACCGATACCCCCACAGGAGGA
1 AACCGATACCCCCAAAGGAAGA
*
72021 AACCGATTCCCCCTAAAGGAAGA
1 AACCGATACCCCC-AAAGGAAGA
72044 AA
1 AA
72046 AGAATATTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.40, C:0.32, G:0.19, T:0.09
Consensus pattern (22 bp):
AACCGATACCCCCAAAGGAAGA
Found at i:72535 original size:2 final size:2
Alignment explanation
Indices: 72528--72557 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
72518 TGAATCATTG
72528 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
72558 GGATATAAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:73314 original size:7 final size:7
Alignment explanation
Indices: 73291--73324 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
73281 GTGAATCATG
73291 TGTGTATA
1 TGTG-ATA
73299 TGT-ATA
1 TGTGATA
73305 TGTGATA
1 TGTGATA
73312 TGTGATA
1 TGTGATA
73319 TGTGAT
1 TGTGAT
73325 TTACATGACA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.24
7 16 0.64
8 3 0.12
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (7 bp):
TGTGATA
Found at i:73625 original size:23 final size:23
Alignment explanation
Indices: 73592--73659 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
73582 ATTATTATAT
73592 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
73615 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
* *
73638 GGCACTTCGGTGCAATTATACG
1 GGCACTACGGTGCAATTCTACG
73660 AGCTGTGGTG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:77262 original size:23 final size:22
Alignment explanation
Indices: 77218--77262 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
77208 AATATCATGG
* *
77218 GGGAATCGATACCCCCACAGGA
1 GGGAACCGATACCCCCAAAGGA
*
77240 GGGAACCGATTCCCCCTAAAGGA
1 GGGAACCGATACCCCC-AAAGGA
77263 AGAAAAGAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.31, C:0.31, G:0.27, T:0.11
Consensus pattern (22 bp):
GGGAACCGATACCCCCAAAGGA
Found at i:78833 original size:23 final size:23
Alignment explanation
Indices: 78800--78867 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
78790 ATTATTATAT
78800 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
78823 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
* * *
78846 GGCACTTCGATGCAATTATACG
1 GGCACTACGGTGCAATTCTACG
78868 AGCTGTGGTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:82859 original size:2 final size:2
Alignment explanation
Indices: 82852--82907 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
82842 TGAATCATTG
82852 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
82894 AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT
82908 GAATATAAGA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:83966 original size:23 final size:23
Alignment explanation
Indices: 83933--84000 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
83923 ATTATTATAT
83933 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* * *
83956 GGCACTCCGGTACAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
* * *
83979 GGCACTTCGGTGAAATTATACG
1 GGCACTACGGTGCAATTCTACG
84001 AGCTGTGGTG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:85056 original size:14 final size:15
Alignment explanation
Indices: 85034--85070 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
85024 GAAAATGCAA
85034 AGATGCAAAAATGGG
1 AGATGCAAAAATGGG
*
85049 AG-TGC-AAAATGTG
1 AGATGCAAAAATGGG
85062 AGATGCAAA
1 AGATGCAAA
85071 TGCAATAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 4
0.79 0.04 0.17
Matches are distributed among these distances:
13 9 0.47
14 6 0.32
15 4 0.21
ACGTcount: A:0.46, C:0.08, G:0.30, T:0.16
Consensus pattern (15 bp):
AGATGCAAAAATGGG
Found at i:87901 original size:19 final size:19
Alignment explanation
Indices: 87863--87902 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
87853 CAAATAATTT
* * *
87863 AATCGAATATTATATTTTA
1 AATCGAATATAAAATCTTA
87882 AATCGAATATAAAATCTTA
1 AATCGAATATAAAATCTTA
87901 AA
1 AA
87903 ATTTAATTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.38
Consensus pattern (19 bp):
AATCGAATATAAAATCTTA
Found at i:88023 original size:14 final size:14
Alignment explanation
Indices: 88004--88030 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
87994 TAAGATTTTC
88004 TTTTGAAAAATTAT
1 TTTTGAAAAATTAT
88018 TTTTGAAAAATTA
1 TTTTGAAAAATTA
88031 CTCCTACTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.48
Consensus pattern (14 bp):
TTTTGAAAAATTAT
Found at i:97504 original size:24 final size:25
Alignment explanation
Indices: 97457--97509 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
97447 TGTTAGTAAA
97457 TTAGTAAGAACAATAAAAATAAAAG
1 TTAGTAAGAACAATAAAAATAAAAG
* *
97482 TTAGTATGAATAAT-AAAATAAAAG
1 TTAGTAAGAACAATAAAAATAAAAG
97506 TTAG
1 TTAG
97510 CGGTTAGCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 14 0.54
25 12 0.46
ACGTcount: A:0.58, C:0.02, G:0.13, T:0.26
Consensus pattern (25 bp):
TTAGTAAGAACAATAAAAATAAAAG
Found at i:97642 original size:126 final size:128
Alignment explanation
Indices: 97487--97731 Score: 379
Period size: 126 Copynumber: 1.9 Consensus size: 128
97477 AAAAGTTAGT
* * * *
97487 ATGAATAATAAAATAAAAGTTAGCGGTTAGCAGAGTTCGAACCATAATAATGTGGGTCTTACCCC
1 ATGAATAATAAAATAAAAGTTAGCGGTTAGCAGAGTCCAAACCATAATAATGTGGGCCTTAACCC
* *
97552 GGATCGAGTCACCACAAGGTCGAATAGAATAATGCAAA-AAATATATATAAAAATTAAATAAA
66 GGATCGAGTCACCACAAGGTCGAATAAAATAATGCAAACAAATATATAAAAAAATTAAATAAA
* * *
97614 ATGAATAA-AATAA-AAAAGTTAGTGGTTAGTAGAGTCCAAACCATAATAATGTGGGCCTTAATC
1 ATGAATAATAA-AATAAAAGTTAGCGGTTAGCAGAGTCCAAACCATAATAATGTGGGCCTTAACC
97677 CGGATCGAGTCACCACAAGGTCGAATAAAATAATGCAAACAAATATATAAAAAAA
65 CGGATCGAGTCACCACAAGGTCGAATAAAATAATGCAAACAAATATATAAAAAAA
97732 AAATTAATGG
Statistics
Matches: 107, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
126 83 0.78
127 24 0.22
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.23
Consensus pattern (128 bp):
ATGAATAATAAAATAAAAGTTAGCGGTTAGCAGAGTCCAAACCATAATAATGTGGGCCTTAACCC
GGATCGAGTCACCACAAGGTCGAATAAAATAATGCAAACAAATATATAAAAAAATTAAATAAA
Found at i:107851 original size:5 final size:5
Alignment explanation
Indices: 107841--107876 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
107831 TTTCGCCAAG
* *
107841 ATAAA ATAAA ATACA ATAAA ATAAA AAAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
107877 ATGAAAAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.17
Consensus pattern (5 bp):
ATAAA
Found at i:108232 original size:24 final size:24
Alignment explanation
Indices: 108201--108264 Score: 110
Period size: 24 Copynumber: 2.6 Consensus size: 24
108191 AAACAACAAA
*
108201 AATAAAAACTTAAAGGATTAAAAT
1 AATAAAAACATAAAGGATTAAAAT
108225 AATAAAAACATAAAGGATTAAAAT
1 AATAAAAACATAAAGGATTAAAAT
108249 AATAAAACACATAAAG
1 AATAAAA-ACATAAAG
108265 TTTAGGGACT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
24 30 0.79
25 8 0.21
ACGTcount: A:0.66, C:0.06, G:0.08, T:0.20
Consensus pattern (24 bp):
AATAAAAACATAAAGGATTAAAAT
Found at i:109732 original size:3 final size:3
Alignment explanation
Indices: 109724--109785 Score: 74
Period size: 3 Copynumber: 21.0 Consensus size: 3
109714 TAATAGAATA
* * *
109724 AAT AAT AAT AAT AAT AAT AAT AAT AA- AAT AAC GAT AAAT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
109769 AAT AAT -AT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT
109786 TTTTTTTAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
2 4 0.08
3 44 0.88
4 2 0.04
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:109748 original size:30 final size:31
Alignment explanation
Indices: 109710--109781 Score: 94
Period size: 33 Copynumber: 2.3 Consensus size: 31
109700 GGCCTGCAAA
*
109710 AATATAATAGAATAA-AT-AATAATAATAAT
1 AATATAATAAAATAACATAAATAATAATAAT
*
109739 AATAATAATAAAATAACGATAAATAATAGTAAT
1 AAT-ATAATAAAATAAC-ATAAATAATAATAAT
109772 AATATAATAA
1 AATATAATAA
109782 TAATTTTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
29 3 0.08
30 11 0.30
32 9 0.24
33 14 0.38
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.29
Consensus pattern (31 bp):
AATATAATAAAATAACATAAATAATAATAAT
Found at i:115703 original size:11 final size:12
Alignment explanation
Indices: 115687--115735 Score: 57
Period size: 11 Copynumber: 4.1 Consensus size: 12
115677 GATGCAGAGT
115687 ACAAAGAAAAA-
1 ACAAAGAAAAAG
*
115698 ACAAAGAAAAAT
1 ACAAAGAAAAAG
115710 AGCAAAAGAAAAAG
1 A-C-AAAGAAAAAG
115724 A-AAAGAAAAAG
1 ACAAAGAAAAAG
115735 A
1 A
115736 AGACAAAAGC
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
11 22 0.65
12 1 0.03
13 1 0.03
14 10 0.29
ACGTcount: A:0.78, C:0.06, G:0.14, T:0.02
Consensus pattern (12 bp):
ACAAAGAAAAAG
Found at i:116942 original size:4 final size:4
Alignment explanation
Indices: 116933--118529 Score: 2612
Period size: 4 Copynumber: 404.0 Consensus size: 4
116923 ATACATCAAC
116933 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
116981 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117029 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117077 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117125 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117172 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117220 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
117266 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAG
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117314 ACAT ACAT ACAT ACAT ACAT ACAT --AT ACAT ACAT ACAT --AT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117358 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117406 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT -CAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
117453 ACAT ACAT AACCT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT -ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117502 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA- ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117549 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-AT ACAT
117598 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
117646 ACAT ACTAC ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT AC-AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * * *
117695 ACAC ACAC ATAC ACAT ACAC ACAT AC-- ACAT ACAT ACAG ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117741 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACA- ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117788 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117836 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117884 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-T ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117931 ACAT AC-- ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
117977 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-- ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
118023 AC-T ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAC
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * *
118070 ACAT ACAC ACAT ACAG ACAT ACAG ACAT ACAC ACAT ACAG ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
118118 ACAT ACAT ACAT ACAT ACAG ACAT ACAG ACAT ACAC ACAT ACAG ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * * * * * * * * * *
118166 ACAC ACAT GCAC GCAT GCAC GCAT GCAC GCAT GCAC GCAT GCACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT --ACAT ACAT
118216 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
118264 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
118312 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
118360 ACAT AC-- ACAT ACAT ACAT ACAT AC-- ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * ** *
118404 ACAT ACAT ACAT GCAT GCAT ACAT GCAT ACAT GTAT ACAT GCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
118452 ACAT GCAT ACAT ACAT GCAT ACAT ACAT ACAT ACAT GCAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
118500 ACAT ACAT ACAT ACAT ACAT --AT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
118530 GTTAAATGAG
Statistics
Matches: 1502, Mismatches: 62, Indels: 58
0.93 0.04 0.04
Matches are distributed among these distances:
2 18 0.01
3 18 0.01
4 1453 0.97
5 10 0.01
6 3 0.00
ACGTcount: A:0.49, C:0.26, G:0.02, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:119084 original size:106 final size:105
Alignment explanation
Indices: 118879--119164 Score: 457
Period size: 106 Copynumber: 2.7 Consensus size: 105
118869 GCAGTTTCTT
* * *
118879 TTGAAATAAAATTAATCTCACTTGAGATTGTTGTTTCTTTCAACAACAAAAAATTT-GTCTCGTT
1 TTGAAACAAAATTAATCTCACTTGAGATTGTTGTTTATTTCAA-AAC---AAATTTCGTCTCGCT
*
118943 TGAGACATTTTTCCTTTGAGATACAAATTTTGAATTTGCTTCAC
62 TGAGACATTTTTCCTTTGAGAAACAAATTTTGAATTTGCTTCAC
* *
118987 TTGAAACAAAATTAATCTCACTTGAGATTGTTGTTTTTTTTCAAAACAAATTTCGTCTCGCCTGA
1 TTGAAACAAAATTAATCTCACTTGAGATTGTTG-TTTATTTCAAAACAAATTTCGTCTCGCTTGA
119052 GACATTTTTCCTTTGAGAAACAAATTTTGAATTTGCTTCAC
65 GACATTTTTCCTTTGAGAAACAAATTTTGAATTTGCTTCAC
119093 TTGAAACAAAATTAATCTCACTTGAGATTGTTGTTTATTTCAAAACAAATTTCGTCTCGCTTGAG
1 TTGAAACAAAATTAATCTCACTTGAGATTGTTGTTTATTTCAAAACAAATTTCGTCTCGCTTGAG
*
119158 ATATTTT
66 ACATTTT
119165 CCCTCATAAT
Statistics
Matches: 168, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
105 42 0.25
106 82 0.49
108 35 0.21
109 9 0.05
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.41
Consensus pattern (105 bp):
TTGAAACAAAATTAATCTCACTTGAGATTGTTGTTTATTTCAAAACAAATTTCGTCTCGCTTGAG
ACATTTTTCCTTTGAGAAACAAATTTTGAATTTGCTTCAC
Found at i:119417 original size:30 final size:30
Alignment explanation
Indices: 119308--119419 Score: 93
Period size: 29 Copynumber: 3.7 Consensus size: 30
119298 CAAAATAACG
* ** *
119308 TCTTTGAGATTGTTTCCCTTGAAAAAAAACCCA
1 TCTTTGAGTTTGTTTCTTTTGAAACAAAA---A
* **
119341 TCTTTGAGTCTT-TTTCTCTTGAAACAAAGG
1 TCTTTGAGT-TTGTTTCTTTTGAAACAAAAA
*
119371 TCTTTGAG-TCGTTTCTTTTGAAACAAAAA
1 TCTTTGAGTTTGTTTCTTTTGAAACAAAAA
*
119400 TCTTTCAGTTTGTTTCTTTT
1 TCTTTGAGTTTGTTTCTTTT
119420 AAAATAAAGT
Statistics
Matches: 65, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
28 1 0.02
29 22 0.34
30 18 0.28
33 22 0.34
34 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.13, T:0.45
Consensus pattern (30 bp):
TCTTTGAGTTTGTTTCTTTTGAAACAAAAA
Found at i:120044 original size:30 final size:29
Alignment explanation
Indices: 119966--120045 Score: 79
Period size: 30 Copynumber: 2.7 Consensus size: 29
119956 CTTGAGACAA
* * *
119966 TTTCTTTTGAGAAAATCATCTTTAAGTATG
1 TTTCTTTCGA-AACATCATCTTTAAGTAGG
* *
119996 TTTCTTTCGAAACATCATCTTTGAGTCGG
1 TTTCTTTCGAAACATCATCTTTAAGTAGG
* *
120025 TTTCTCTTGGAACCATCATCT
1 TTTCT-TTCGAAACATCATCT
120046 CTAAAGATGG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 20 0.48
30 22 0.52
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.44
Consensus pattern (29 bp):
TTTCTTTCGAAACATCATCTTTAAGTAGG
Found at i:120292 original size:134 final size:133
Alignment explanation
Indices: 120046--120385 Score: 439
Period size: 134 Copynumber: 2.5 Consensus size: 133
120036 ACCATCATCT
* * * **
120046 CTAAAGATGGCTATAACTCTTCATCACGTATGAGCCGTACCATCCCCTGACCAGATCTCCTCATC
1 CTAAAGATGGCCAAAACTCTTCATCACGTATGAGTCGTGTCAT-CCCTGACCAGATCTCCTCATC
** *
120111 ACGTAGGAGCAGCGTCAACTTTAGATAACCAGTCGTCCTCATCACGTAGGAACCGAGTTATCACC
65 ACGTAGGAGCAGCGTCAACCGTAGATAACCAGCCGTCCTCATCACGTAGGAACCGAGTTATCACC
**
120176 TTTC
130 ACTC
* * *
120180 CTACAA-ATGGCCAAAACTCTTCATCGCGTATGAGTAGTGTCATCCCTTGACCAGACCTCCTCAT
1 CTA-AAGATGGCCAAAACTCTTCATCACGTATGAGTCGTGTCATCCC-TGACCAGATCTCCTCAT
*
120244 CACGTAGGAGCCGCGTCAACCGTAGATAACCAGCCGTCCTCATCACGTAGGAACCGAGTTATCAC
64 CACGTAGGAGCAGCGTCAACCGTAGATAACCAGCCGTCCTCATCACGTAGGAACCGAGTTATCAC
120309 CACTC
129 CACTC
**** * * * *
120314 CTAAAGATGGCCAGTTGTCCTCATCACGTAGGAATCGTGTCATCCCCGACCAGATCTCCTCATCA
1 CTAAAGATGGCCAAAACTCTTCATCACGTATGAGTCGTGTCATCCCTGACCAGATCTCCTCATCA
*
120379 CGCAGGA
66 CGTAGGA
120386 ACCGAGTTAT
Statistics
Matches: 177, Mismatches: 26, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
133 28 0.16
134 147 0.83
135 2 0.01
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (133 bp):
CTAAAGATGGCCAAAACTCTTCATCACGTATGAGTCGTGTCATCCCTGACCAGATCTCCTCATCA
CGTAGGAGCAGCGTCAACCGTAGATAACCAGCCGTCCTCATCACGTAGGAACCGAGTTATCACCA
CTC
Found at i:120394 original size:90 final size:91
Alignment explanation
Indices: 120280--120467 Score: 272
Period size: 91 Copynumber: 2.1 Consensus size: 91
120270 TAACCAGCCG
* ***
120280 TCCTCATCACGTAGGAACCGAGTTATCACCACT-CCTAAAGATGGCC-AGTTGTCCTCATCACGT
1 TCCTCATCACGCAGGAACCGAGTTATCACC-CTACCTAAAGATGGCCAAGACCTCCTCATCACGT
*
120343 AGGAATCGTGTCATCCCCGACCAGATC
65 AGGAATAGTGTCATCCCCGACCAGATC
* *
120370 TCCTCATCACGCAGGAACCGAGTTATCACCCTACCTAAAGATGGCCAAGACCTCTTCATCATGTA
1 TCCTCATCACGCAGGAACCGAGTTATCACCCTACCTAAAGATGGCCAAGACCTCCTCATCACGTA
* *
120435 TGAGTAGTGTCATCCCCGACCAGATC
66 GGAATAGTGTCATCCCCGACCAGATC
120461 TCCTCAT
1 TCCTCAT
120468 TAAGTAGGAG
Statistics
Matches: 87, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
89 2 0.02
90 42 0.48
91 43 0.49
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (91 bp):
TCCTCATCACGCAGGAACCGAGTTATCACCCTACCTAAAGATGGCCAAGACCTCCTCATCACGTA
GGAATAGTGTCATCCCCGACCAGATC
Found at i:123620 original size:24 final size:24
Alignment explanation
Indices: 123581--123643 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
123571 TAATACAGCT
* * *
123581 GGAATGCCTCCCAACAATAGGGGA
1 GGAATGCCGCCGAACAACAGGGGA
* * *
123605 GGGATGCCGCCGAACACCATGGGA
1 GGAATGCCGCCGAACAACAGGGGA
*
123629 GGAATGCTGCCGAAC
1 GGAATGCCGCCGAAC
123644 CAAGGATGGT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.29, C:0.27, G:0.33, T:0.11
Consensus pattern (24 bp):
GGAATGCCGCCGAACAACAGGGGA
Found at i:126473 original size:19 final size:18
Alignment explanation
Indices: 126437--126475 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
126427 TTTTTTTAAT
126437 TATATAGTTTATGATTTA
1 TATATAGTTTATGATTTA
126455 TATATAAGTTT-TGATTT-
1 TATAT-AGTTTATGATTTA
126472 TATA
1 TATA
126476 AATTTCAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.20
18 11 0.55
19 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.56
Consensus pattern (18 bp):
TATATAGTTTATGATTTA
Found at i:129121 original size:20 final size:20
Alignment explanation
Indices: 129096--129192 Score: 167
Period size: 20 Copynumber: 4.8 Consensus size: 20
129086 GCGATTTTCC
129096 TAAATCGCAATGCGAATACG
1 TAAATCGCAATGCGAATACG
*
129116 TAAATCGTAATGCGAATACG
1 TAAATCGCAATGCGAATACG
129136 TAAATCGCAATGCGAATACG
1 TAAATCGCAATGCGAATACG
*
129156 TAAATAGCAATGCGAATACG
1 TAAATCGCAATGCGAATACG
*
129176 TAAATCGCAACGCGAAT
1 TAAATCGCAATGCGAAT
129193 CTGACTATCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 72 1.00
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.21
Consensus pattern (20 bp):
TAAATCGCAATGCGAATACG
Found at i:129202 original size:20 final size:20
Alignment explanation
Indices: 129179--129265 Score: 129
Period size: 20 Copynumber: 4.3 Consensus size: 20
129169 GAATACGTAA
* *
129179 ATCGCAACGCGAATCTGACT
1 ATCGCAACGAGATTCTGACT
129199 ATCGCAACGAGATTCTGACT
1 ATCGCAACGAGATTCTGACT
*
129219 ATCACAACGAGATTCTGACT
1 ATCGCAACGAGATTCTGACT
* *
129239 ATCGTAACGCGATTCTGACT
1 ATCGCAACGAGATTCTGACT
129259 ATCGCAA
1 ATCGCAA
129266 TACTGAATTT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (20 bp):
ATCGCAACGAGATTCTGACT
Found at i:130133 original size:24 final size:24
Alignment explanation
Indices: 130106--130159 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
130096 GTATTCGAAA
130106 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
130130 TTTGATCTTGGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
130154 TTTGAT
1 TTTGAT
130160 GATTTTTCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:132585 original size:20 final size:20
Alignment explanation
Indices: 132560--132648 Score: 135
Period size: 20 Copynumber: 4.5 Consensus size: 20
132550 CAACGCGGAA
132560 ATCGCAACGC-GAATATGACT
1 ATCGCAACGCGGAA-ATGACT
**
132580 ATCGCAATACGGAAATGACT
1 ATCGCAACGCGGAAATGACT
*
132600 ATCGCAACGCGGAATTGACT
1 ATCGCAACGCGGAAATGACT
132620 ATCGCAACGCGGAAATGACT
1 ATCGCAACGCGGAAATGACT
132640 ATCGCAACG
1 ATCGCAACG
132649 AGAGAATCGC
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
20 59 0.95
21 3 0.05
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (20 bp):
ATCGCAACGCGGAAATGACT
Found at i:132670 original size:33 final size:33
Alignment explanation
Indices: 132620--132710 Score: 110
Period size: 33 Copynumber: 2.7 Consensus size: 33
132610 GGAATTGACT
* ** * *
132620 ATCGCAACGCGGAAATGACTATCGCAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGAAACGAGAAA
132654 ATCGCAATGCGAAATGAAAATCGAAACGAGAAA
1 ATCGCAATGCGAAATGAAAATCGAAACGAGAAA
*
132687 ATCGCAATGCGAAAATCAAAATCG
1 ATCGCAATGCG-AAATGAAAATCG
132711 CAACTCGAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
33 30 0.60
34 20 0.40
ACGTcount: A:0.45, C:0.20, G:0.22, T:0.13
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGAAACGAGAAA
Found at i:132773 original size:34 final size:34
Alignment explanation
Indices: 132730--132826 Score: 158
Period size: 34 Copynumber: 2.9 Consensus size: 34
132720 ACTAAATTCA
**
132730 CGTTGCGATTTTCATTTTTGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCCGCATTGCGATTCTCT
132764 CGTTGCGATTTTCATTTCCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCCGCATTGCGATTCTCT
**
132798 CGTTGCGATAGTCATTTCCGCATTGCGAT
1 CGTTGCGATTTTCATTTCCGCATTGCGAT
132827 AGTCTGTTTT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 59 1.00
ACGTcount: A:0.13, C:0.24, G:0.20, T:0.43
Consensus pattern (34 bp):
CGTTGCGATTTTCATTTCCGCATTGCGATTCTCT
Found at i:132951 original size:14 final size:14
Alignment explanation
Indices: 132932--132968 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
132922 CATCAATTAA
132932 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
132946 ACAAATCATCTTTT
1 ACAAATCAACATTT
132960 ACAAATCAA
1 ACAAATCAA
132969 TTAACAATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:134444 original size:42 final size:42
Alignment explanation
Indices: 134365--134457 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
134355 CCTCTTCAAC
* * *
134365 GATGACAGTGGCCTCTTGAACGGTGGGAGGAGACTCTTGAGG
1 GATGACAGGGGCCTCTTGAACGATAGGAGGAGACTCTTGAGG
* * **
134407 GATGATAGGGGCCTCTTGAACGATAGG-GGAGGTCTCTTGAAC
1 GATGACAGGGGCCTCTTGAACGATAGGAGGA-GACTCTTGAGG
134449 GATGACAGG
1 GATGACAGG
134458 TGAGTCGGGC
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 3 0.07
42 39 0.93
ACGTcount: A:0.24, C:0.16, G:0.39, T:0.22
Consensus pattern (42 bp):
GATGACAGGGGCCTCTTGAACGATAGGAGGAGACTCTTGAGG
Found at i:134960 original size:20 final size:20
Alignment explanation
Indices: 134937--134985 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
134927 GAAACTTAAA
134937 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
134957 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
134977 ATCGCAACG
1 ATCGCAACG
134986 AGAGAATCGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.39, C:0.27, G:0.20, T:0.14
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:135055 original size:20 final size:20
Alignment explanation
Indices: 135030--135165 Score: 77
Period size: 20 Copynumber: 7.5 Consensus size: 20
135020 GATTCTTTCG
135030 TTGCGATAGTTATTTTCGCA
1 TTGCGATAGTTATTTTCGCA
* *
135050 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTTATTTTCGCA
*
135070 TTGCGAT--TT-TGTT-G--
1 TTGCGATAGTTATTTTCGCA
*
135084 TTGCGAT-TTTCA-TTTCGCA
1 TTGCGATAGTT-ATTTTCGCA
* *
135103 TTGCG--A-TT-CTCTCG--
1 TTGCGATAGTTATTTTCGCA
* *
135117 TTGCGATAGTCA-TTTCGCG
1 TTGCGATAGTTATTTTCGCA
*
135136 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTTATTTTCGCA
135156 TTGCGATAGT
1 TTGCGATAGT
135166 AAACTATTCT
Statistics
Matches: 92, Mismatches: 9, Indels: 30
0.70 0.07 0.23
Matches are distributed among these distances:
14 12 0.13
15 2 0.02
16 8 0.09
17 11 0.12
18 1 0.01
19 17 0.18
20 41 0.45
ACGTcount: A:0.15, C:0.18, G:0.23, T:0.43
Consensus pattern (20 bp):
TTGCGATAGTTATTTTCGCA
Found at i:135100 original size:53 final size:53
Alignment explanation
Indices: 134992--135165 Score: 148
Period size: 53 Copynumber: 3.3 Consensus size: 53
134982 AACGAGAGAA
* **
134992 TCGCAATGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATAGTTATTT
1 TCGCATTGCGATAGTCATTTCGCATTGCGATTCTTTCGTTGCGATAGTTATTT
* * *
135045 TCGCATTGCGATAGTCATTTTCGCGTTGCGATT-TTGTTGTTGCGAT-TTTCA-TT
1 TCGCATTGCGATAGTCA-TTTCGCATTGCGATTCTT-TCGTTGCGATAGTT-ATTT
* *
135098 TCGCATTGCGAT--TC-TCTCG--TTGCGATAGTCATTTCGCGTTGCGATAGTCATTT
1 TCGCATTGCGATAGTCATTTCGCATTGCGAT--TC-TTT--CGTTGCGATAGTTATTT
135151 TCGCATTGCGATAGT
1 TCGCATTGCGATAGT
135166 AAACTATTCT
Statistics
Matches: 98, Mismatches: 10, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
47 7 0.07
49 5 0.05
50 1 0.01
51 4 0.04
52 9 0.09
53 47 0.48
54 24 0.24
55 1 0.01
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.43
Consensus pattern (53 bp):
TCGCATTGCGATAGTCATTTCGCATTGCGATTCTTTCGTTGCGATAGTTATTT
Found at i:135107 original size:33 final size:33
Alignment explanation
Indices: 135050--135142 Score: 123
Period size: 33 Copynumber: 2.8 Consensus size: 33
135040 TATTTTCGCA
* * *
135050 TTGCGATAGTCATTTTCGCGTTGCGATTTTGTTG
1 TTGCGATAGTCA-TTTCGCGTTGCGATTCTCTCG
** *
135084 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATAGTCATTTCGCGTTGCGATTCTCTCG
135117 TTGCGATAGTCATTTCGCGTTGCGAT
1 TTGCGATAGTCATTTCGCGTTGCGAT
135143 AGTCATTTTC
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
33 40 0.80
34 10 0.20
ACGTcount: A:0.13, C:0.19, G:0.24, T:0.44
Consensus pattern (33 bp):
TTGCGATAGTCATTTCGCGTTGCGATTCTCTCG
Found at i:135111 original size:87 final size:86
Alignment explanation
Indices: 134998--135162 Score: 285
Period size: 87 Copynumber: 1.9 Consensus size: 86
134988 AGAATCGCAA
* *
134998 TGCGATTTTCATTTCGCATTGCGATTCTTTCGTTGCGATAGTTATTTTCGCATTGCGATAGTCAT
1 TGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATAGTCA-TTTCGCATTGCGATAGTCAT
*
135063 TTTCGCGTTGCGATTTTGTTGT
65 TTTCGCATTGCGATTTTGTTGT
*
135085 TGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATAGTCATTTCGCGTTGCGATAGTCATT
1 TGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATAGTCATTTCGCATTGCGATAGTCATT
135150 TTCGCATTGCGAT
66 TTCGCATTGCGAT
135163 AGTAAACTAT
Statistics
Matches: 74, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
86 32 0.43
87 42 0.57
ACGTcount: A:0.15, C:0.19, G:0.22, T:0.44
Consensus pattern (86 bp):
TGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATAGTCATTTCGCATTGCGATAGTCATT
TTCGCATTGCGATTTTGTTGT
Found at i:137054 original size:20 final size:20
Alignment explanation
Indices: 137031--137120 Score: 101
Period size: 20 Copynumber: 4.5 Consensus size: 20
137021 TATGAAACTT
137031 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
137051 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
** * **
137071 ACTATCGCAACGCGAATTTG
1 AAAATCGCAACACGAAAATG
** *
137091 ACTATCGCAACGCG-AAATG
1 AAAATCGCAACACGAAAATG
137110 AAAATCGCAAC
1 AAAATCGCAAC
137121 GACAGAATCG
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
19 12 0.20
20 49 0.80
ACGTcount: A:0.46, C:0.23, G:0.17, T:0.14
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:137515 original size:22 final size:22
Alignment explanation
Indices: 137455--137519 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
137445 TGACCGTGAA
** * *
137455 TGATTTCACCGGAGATAGAGAC
1 TGATTTCGTCGGAGATGGGGAC
* *
137477 TGATATCGTCAGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
137499 TGATTTCGTCGGAGATGGGGA
1 TGATTTCGTCGGAGATGGGGA
137520 TGGATGTCGC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.26, C:0.14, G:0.35, T:0.25
Consensus pattern (22 bp):
TGATTTCGTCGGAGATGGGGAC
Found at i:137764 original size:21 final size:21
Alignment explanation
Indices: 137734--137786 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
137724 ATTTACGTAT
*
137734 TCGCATTGCGAATTAGGAAAA
1 TCGCAATGCGAATTAGGAAAA
*
137755 TCGCAATGCGAATTTGGAAAA
1 TCGCAATGCGAATTAGGAAAA
137776 TCGCAATGCGA
1 TCGCAATGCGA
137787 TAGTCAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAATTAGGAAAA
Found at i:139379 original size:115 final size:115
Alignment explanation
Indices: 139177--139407 Score: 417
Period size: 115 Copynumber: 2.0 Consensus size: 115
139167 ACTGGTGCCA
* *
139177 ATCCATTCCCTGAAGTGAATGCAACATCTTATAGTAGAAAAAATTAAGGCATCACCAACAACCAT
1 ATCCATTCCCTGAAGTGAATGCAACATCTTATAGTAAAAAAAATAAAGGCATCACCAACAACCAT
*
139242 GGTCGTGTTTATGGATGCGGTTGAGGTCATTATCATGGTCGAGGACGTGG
66 GGTCGTGGTTATGGATGCGGTTGAGGTCATTATCATGGTCGAGGACGTGG
*
139292 ATCCATTCCCTGAAGTGAATGCAACATCTTATAGTAAAAAAAATAAAGGCATCACCAACAACTAT
1 ATCCATTCCCTGAAGTGAATGCAACATCTTATAGTAAAAAAAATAAAGGCATCACCAACAACCAT
*
139357 GGTCGTGGTTATGGATGCGGTTGAGGTCATTATCATGGTTGAGGACGTGG
66 GGTCGTGGTTATGGATGCGGTTGAGGTCATTATCATGGTCGAGGACGTGG
139407 A
1 A
139408 CGAAGTGATC
Statistics
Matches: 111, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
115 111 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (115 bp):
ATCCATTCCCTGAAGTGAATGCAACATCTTATAGTAAAAAAAATAAAGGCATCACCAACAACCAT
GGTCGTGGTTATGGATGCGGTTGAGGTCATTATCATGGTCGAGGACGTGG
Found at i:141235 original size:39 final size:39
Alignment explanation
Indices: 141190--141267 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
141180 AAAATAAATC
141190 CTAATTAAAACACTTAAAACTATTTAAACTAAAATACCT
1 CTAATTAAAACACTTAAAACTATTTAAACTAAAATACCT
141229 CTAATTAAAACACTTAAAACTATTTAAACTAAAATACCT
1 CTAATTAAAACACTTAAAACTATTTAAACTAAAATACCT
141268 AAAACAAAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (39 bp):
CTAATTAAAACACTTAAAACTATTTAAACTAAAATACCT
Found at i:141323 original size:87 final size:87
Alignment explanation
Indices: 141229--141400 Score: 326
Period size: 87 Copynumber: 2.0 Consensus size: 87
141219 TAAAATACCT
141229 CTAATTAAAACACTTAAAACTATTTAAACTAAAATACCTAAAACAAAGATAAGATAAAATATAAT
1 CTAATTAAAACACTTAAAACTATTTAAACTAAAATACCTAAAACAAAGATAAGATAAAATATAAT
141294 ATTTAAAATAATATCCTAAATC
66 ATTTAAAATAATATCCTAAATC
* *
141316 CTAATTAAAATACTTAAAATTATTTAAACTAAAATACCTAAAACAAAGATAAGATAAAATATAAT
1 CTAATTAAAACACTTAAAACTATTTAAACTAAAATACCTAAAACAAAGATAAGATAAAATATAAT
141381 ATTTAAAATAATATCCTAAA
66 ATTTAAAATAATATCCTAAA
141401 ACATGAGTTT
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 83 1.00
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (87 bp):
CTAATTAAAACACTTAAAACTATTTAAACTAAAATACCTAAAACAAAGATAAGATAAAATATAAT
ATTTAAAATAATATCCTAAATC
Found at i:141384 original size:44 final size:43
Alignment explanation
Indices: 141249--141403 Score: 161
Period size: 44 Copynumber: 3.6 Consensus size: 43
141239 CACTTAAAAC
*
141249 TATTTAAACTAAAATACCTAAAACAAAGATAAGATAAAATATAA
1 TATTTAAAATAAAAT-CCTAAAACAAAGATAAGATAAAATATAA
* * * * * ** *
141293 TATTTAAAATAATATCCTAAATCCTAA-TTAAAAT-ACTTAAAA
1 TATTTAAAATAAAATCCTAAA-ACAAAGATAAGATAAAATATAA
*
141335 TTATTTAAACTAAAATACCTAAAACAAAGATAAGATAAAATATAA
1 -TATTTAAAATAAAAT-CCTAAAACAAAGATAAGATAAAATATAA
*
141380 TATTTAAAATAATATCCTAAAACA
1 TATTTAAAATAAAATCCTAAAACA
141404 TGAGTTTAAT
Statistics
Matches: 86, Mismatches: 20, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
42 5 0.06
43 36 0.42
44 40 0.47
45 5 0.06
ACGTcount: A:0.57, C:0.10, G:0.03, T:0.30
Consensus pattern (43 bp):
TATTTAAAATAAAATCCTAAAACAAAGATAAGATAAAATATAA
Found at i:143380 original size:30 final size:30
Alignment explanation
Indices: 143345--143416 Score: 135
Period size: 30 Copynumber: 2.4 Consensus size: 30
143335 TTTCTACACT
143345 GCATTGTTCGAATCTGCTGTGTATTTTTTG
1 GCATTGTTCGAATCTGCTGTGTATTTTTTG
*
143375 GCATTGTTCGAATCTGTTGTGTATTTTTTG
1 GCATTGTTCGAATCTGCTGTGTATTTTTTG
143405 GCATTGTTCGAA
1 GCATTGTTCGAA
143417 CCAAATCAGT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.15, C:0.12, G:0.24, T:0.49
Consensus pattern (30 bp):
GCATTGTTCGAATCTGCTGTGTATTTTTTG
Found at i:143501 original size:30 final size:28
Alignment explanation
Indices: 143463--143528 Score: 80
Period size: 30 Copynumber: 2.3 Consensus size: 28
143453 TTTCTGCAGA
*
143463 GTTCGAACCAACTCTA-TTTTTTTCCGCACT
1 GTTCGAACCAAATC-AGTTTTTTT--GCACT
*
143493 GTTTGAACCAAATCAGTTTTTTTGCACT
1 GTTCGAACCAAATCAGTTTTTTTGCACT
143521 GTTCGAAC
1 GTTCGAAC
143529 AGTGTATTTC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 12 0.38
29 1 0.03
30 19 0.59
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (28 bp):
GTTCGAACCAAATCAGTTTTTTTGCACT
Done.