Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007984.1 Hibiscus syriacus cultivar Beakdansim tig00110429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12923621
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 30 of 65
Found at i:5964869 original size:19 final size:20
Alignment explanation
Indices: 5964832--5964869 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
5964822 CTTTTTCTCA
*
5964832 TGGGGGAATCGGTTCCCCCC
1 TGGGGGAATCGATTCCCCCC
*
5964852 TGGGGGTATCGATTCCCC
1 TGGGGGAATCGATTCCCC
5964870 TCAAGCAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.11, C:0.32, G:0.34, T:0.24
Consensus pattern (20 bp):
TGGGGGAATCGATTCCCCCC
Found at i:5964977 original size:66 final size:66
Alignment explanation
Indices: 5964833--5965004 Score: 211
Period size: 67 Copynumber: 2.6 Consensus size: 66
5964823 TTTTTCTCAT
* * *
5964833 GGGGGAATCGGTTCCCCCCTGGGGGTATCGATTCCCCTCAAGCAATCTGGAATTTCATATACGAT
1 GGGGGTATCGG-TCCCCCCTGGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACGAT
5964898 GA
65 GA
* * * *
5964900 GGGGGTATCGGTCCCCCCCTGGGGGTACCGATTCCCCTCTAGCATTCTGGAAATTCAT-TTCGTT
1 GGGGGTATCGGT-CCCCCCTGGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACGAT
5964964 GA
65 GA
* * *
5964966 GGGGGTATCGGTTCCCCTTGAATGGGTACCGATTCCCCT
1 GGGGGTATCGGTCCCCCCTG--GGGGTACCGATTCCCCT
5965005 AACCCAGAAA
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
65 6 0.07
66 19 0.21
67 67 0.73
ACGTcount: A:0.17, C:0.27, G:0.28, T:0.27
Consensus pattern (66 bp):
GGGGGTATCGGTCCCCCCTGGGGGTACCGATTCCCCTCAAGCAATCTGGAAATTCATATACGATG
A
Found at i:5966534 original size:21 final size:21
Alignment explanation
Indices: 5966468--5966534 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
5966458 GTGAATCGGG
*
5966468 CTCTTGAATGGTGGGA-GGGA
1 CTCTTGAACGGTGGGAGGGGA
* * ** * *
5966488 CCTCTTCAACGATGACAGTGGC
1 -CTCTTGAACGGTGGGAGGGGA
5966510 CTCTTGAACGGTGGGAGGGGA
1 CTCTTGAACGGTGGGAGGGGA
5966531 CTCT
1 CTCT
5966535 CGAGGAATGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 30 0.94
22 2 0.06
ACGTcount: A:0.19, C:0.21, G:0.36, T:0.24
Consensus pattern (21 bp):
CTCTTGAACGGTGGGAGGGGA
Found at i:5966553 original size:42 final size:41
Alignment explanation
Indices: 5966468--5966590 Score: 113
Period size: 42 Copynumber: 2.9 Consensus size: 41
5966458 GTGAATCGGG
* * * * *
5966468 CTCTTGAATGGTGGGA-GGGACCTCTTCAACGATGACAGTGGC
1 CTCTTGAACGGTGGGAGGGGA-CTC-TCGAGGATGATAGGGGC
5966510 CTCTTGAACGGTGGGAGGGGACTCTCGAGGAATGATAGGGGC
1 CTCTTGAACGGTGGGAGGGGACTCTCGAGG-ATGATAGGGGC
* * * * *
5966552 CTCTTCAACGATAGGAGTGGACTCTTGAGGGATGATAGG
1 CTCTTGAACGGTGGGAGGGGACTCTCGA-GGATGATAGG
5966591 TGAGTCGAGC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 4 0.06
42 58 0.85
43 6 0.09
ACGTcount: A:0.23, C:0.18, G:0.37, T:0.23
Consensus pattern (41 bp):
CTCTTGAACGGTGGGAGGGGACTCTCGAGGATGATAGGGGC
Found at i:5968622 original size:20 final size:19
Alignment explanation
Indices: 5968591--5968770 Score: 119
Period size: 19 Copynumber: 9.8 Consensus size: 19
5968581 TCTTTTGGTT
5968591 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGA
* *
5968610 GATAATGAGAATCGCAACGCG
1 GA-AATGAAAATCGCAACG-A
**
5968631 GAAATGACTATCGCAACGA
1 GAAATGAAAATCGCAACGA
*
5968650 G--A-G--AATCGCAACGC
1 GAAATGAAAATCGCAACGA
**
5968664 GAAATGACTATCG---CGA
1 GAAATGAAAATCGCAACGA
** * *
5968680 -CCA-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGA
* *
5968697 GAAATTAAAATCGCAACCGC
1 GAAATGAAAATCGCAA-CGA
* *
5968717 GAAATTAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
*
5968736 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGA
5968755 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
5968771 TGCGATTTTG
Statistics
Matches: 130, Mismatches: 18, Indels: 26
0.75 0.10 0.15
Matches are distributed among these distances:
14 17 0.13
15 1 0.01
16 4 0.03
17 4 0.03
18 1 0.01
19 53 0.41
20 48 0.37
21 2 0.02
ACGTcount: A:0.44, C:0.22, G:0.21, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGA
Found at i:5968708 original size:19 final size:19
Alignment explanation
Indices: 5968686--5968775 Score: 144
Period size: 19 Copynumber: 4.7 Consensus size: 19
5968676 GCGACCAGAC
*
5968686 AATCGCAACGCGAAATTAA
1 AATCGCAACGCGAAATGAA
*
5968705 AATCGCAACCGCGAAATTAA
1 AATCGCAA-CGCGAAATGAA
5968725 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
5968744 AATCGCAACGCGAAATGAA
1 AATCGCAACGCGAAATGAA
*
5968763 AATCGCAATGCGA
1 AATCGCAACGCGA
5968776 TTTTGGTTTC
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
19 49 0.72
20 19 0.28
ACGTcount: A:0.46, C:0.22, G:0.19, T:0.13
Consensus pattern (19 bp):
AATCGCAACGCGAAATGAA
Found at i:5968729 original size:39 final size:38
Alignment explanation
Indices: 5968591--5968775 Score: 165
Period size: 33 Copynumber: 5.1 Consensus size: 38
5968581 TCTTTTGGTT
* *
5968591 GAAATGAAAATCGCAACGAGATAATGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGCGA-AATGAAAATCGCAACGC
** *
5968630 GGAAATGACTATCGCAA--CG--A-GAGAATCGCAACGC
1 -GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
** * *
5968664 GAAATGACTATCGCGAC-C---A-GACAATCGCAACGC
1 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
* *
5968697 GAAATTAAAATCGCAACCGCGAAATTAAAATCGCAACGC
1 GAAATGAAAATCGCAA-CGCGAAATGAAAATCGCAACGC
*
5968736 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
5968774 GA
1 GA
5968776 TTTTGGTTTC
Statistics
Matches: 124, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
33 41 0.33
34 16 0.13
35 2 0.02
38 24 0.19
39 27 0.22
40 14 0.11
ACGTcount: A:0.43, C:0.22, G:0.22, T:0.13
Consensus pattern (38 bp):
GAAATGAAAATCGCAACGCGAAATGAAAATCGCAACGC
Found at i:5968804 original size:19 final size:19
Alignment explanation
Indices: 5968771--5968815 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
5968761 AAAATCGCAA
*
5968771 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGATTTCGCGT
*
5968790 TGCGATTTTTATTTCGCGT
1 TGCGATTTTGATTTCGCGT
5968809 TGCGATT
1 TGCGATT
5968816 ATCTCGTTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.09, C:0.16, G:0.27, T:0.49
Consensus pattern (19 bp):
TGCGATTTTGATTTCGCGT
Found at i:5969450 original size:20 final size:20
Alignment explanation
Indices: 5969365--5969458 Score: 80
Period size: 20 Copynumber: 4.7 Consensus size: 20
5969355 CGCTAAGTAA
*
5969365 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
* * *
5969385 ATCGTGTTGCGAAAGTAAGT
1 ATCGCGTTGCGATAGTCAGT
* ** * *
5969405 ATCTCGTTGCGATTTTTTATT
1 ATCGCGTTGCGA-TAGTCAGT
*
5969426 ATCGCATTGCGATAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
*
5969446 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
5969459 TTTCCCAATT
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
20 45 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCAGT
Found at i:5969477 original size:41 final size:41
Alignment explanation
Indices: 5969447--5969542 Score: 147
Period size: 41 Copynumber: 2.3 Consensus size: 41
5969437 ATAGTCAGTA
* * *
5969447 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
* *
5969488 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
5969529 TCGCATTGCGAATT
1 TCGCATTGCGAATT
5969543 GGGAAAATCG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 54 1.00
ACGTcount: A:0.19, C:0.24, G:0.18, T:0.40
Consensus pattern (41 bp):
TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTCACGTAT
Found at i:5969491 original size:20 final size:20
Alignment explanation
Indices: 5969447--5969539 Score: 96
Period size: 20 Copynumber: 4.5 Consensus size: 20
5969437 ATAGTCAGTA
* **
5969447 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
5969468 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
5969488 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCG-ATTTACTTAT
*
5969509 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
5969529 TCGCATTGCGA
1 TCGCATTGCGA
5969540 ATTGGGAAAA
Statistics
Matches: 58, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
20 32 0.55
21 26 0.45
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:5972546 original size:25 final size:24
Alignment explanation
Indices: 5972497--5972578 Score: 89
Period size: 24 Copynumber: 3.3 Consensus size: 24
5972487 CAAAATAAAA
5972497 ATAAAATATTTTTTAATTAAGTTAAT
1 ATAAAATA--TTTTAATTAAGTTAAT
5972523 AGTAAAATATATTTAA-TAAGTTAAT
1 A-TAAAATAT-TTTAATTAAGTTAAT
5972548 ATAAAATATTTTAACTTAA--TATAT
1 ATAAAATATTTTAA-TTAAGTTA-AT
5972572 ATAAAAT
1 ATAAAAT
5972579 TATATTATAT
Statistics
Matches: 51, Mismatches: 0, Indels: 12
0.81 0.00 0.19
Matches are distributed among these distances:
23 7 0.14
24 17 0.33
25 14 0.27
26 6 0.12
27 7 0.14
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (24 bp):
ATAAAATATTTTAATTAAGTTAAT
Found at i:5973332 original size:31 final size:31
Alignment explanation
Indices: 5973291--5973358 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
5973281 GGGTGACCAC
* * *
5973291 ATCTTCATTAAATAAATATGAAAATGATAAT
1 ATCTTAATTAAATAAAAATAAAAATGATAAT
*
5973322 ATCTTAATTAAATAAAAATAAAAATGATCAT
1 ATCTTAATTAAATAAAAATAAAAATGATAAT
5973353 ATCTTA
1 ATCTTA
5973359 TGTTTTTTGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.35
Consensus pattern (31 bp):
ATCTTAATTAAATAAAAATAAAAATGATAAT
Found at i:5974183 original size:17 final size:17
Alignment explanation
Indices: 5974161--5974193 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
5974151 TAAATAATGC
5974161 TAATCAAATAATTTACT
1 TAATCAAATAATTTACT
5974178 TAATCAAATAATTTAC
1 TAATCAAATAATTTAC
5974194 CGTTAACATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (17 bp):
TAATCAAATAATTTACT
Found at i:5975193 original size:13 final size:13
Alignment explanation
Indices: 5975161--5975193 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
5975151 ACGAACGAAC
*
5975161 ATAAACGAACACA
1 ATAAACTAACACA
5975174 ATAAACTAACACA
1 ATAAACTAACACA
5975187 ATAAACT
1 ATAAACT
5975194 CACATAAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.61, C:0.21, G:0.03, T:0.15
Consensus pattern (13 bp):
ATAAACTAACACA
Found at i:5975494 original size:14 final size:13
Alignment explanation
Indices: 5975475--5975537 Score: 53
Period size: 14 Copynumber: 5.0 Consensus size: 13
5975465 CTCTGTTTGA
5975475 ACATAAATGAACGG
1 ACATAAATGAAC-G
5975489 ACATAAATG-A--
1 ACATAAATGAACG
5975499 ACATAAATGAACG
1 ACATAAATGAACG
*
5975512 AACATAAACGAAC-
1 -ACATAAATGAACG
* *
5975525 ATATAATTGAACG
1 ACATAAATGAACG
5975538 TTCACGAGCG
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
10 9 0.22
11 1 0.03
12 9 0.22
13 1 0.03
14 20 0.50
ACGTcount: A:0.54, C:0.14, G:0.14, T:0.17
Consensus pattern (13 bp):
ACATAAATGAACG
Found at i:5975501 original size:24 final size:24
Alignment explanation
Indices: 5975472--5975537 Score: 96
Period size: 24 Copynumber: 2.7 Consensus size: 24
5975462 GCCCTCTGTT
*
5975472 TGAACATAAATGAACGGACATAAA
1 TGAACATAAATGAACGAACATAAA
5975496 TGAACATAAATGAACGAACATAAA
1 TGAACATAAATGAACGAACATAAA
*
5975520 CGAACATATAATTGAACG
1 TGAACATA-AA-TGAACG
5975538 TTCACGAGCG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 30 0.79
25 2 0.05
26 6 0.16
ACGTcount: A:0.53, C:0.14, G:0.15, T:0.18
Consensus pattern (24 bp):
TGAACATAAATGAACGAACATAAA
Found at i:5976886 original size:13 final size:13
Alignment explanation
Indices: 5976867--5976906 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
5976857 ACAACCCGAC
*
5976867 CCGACCCGTTTA-
1 CCGACCCGTTGAT
5976879 CTCGACCCGTTGAT
1 C-CGACCCGTTGAT
5976893 CCGACCCGTTGAT
1 CCGACCCGTTGAT
5976906 C
1 C
5976907 GGCGTTAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 1 0.04
13 23 0.92
14 1 0.04
ACGTcount: A:0.15, C:0.40, G:0.20, T:0.25
Consensus pattern (13 bp):
CCGACCCGTTGAT
Found at i:5978238 original size:18 final size:18
Alignment explanation
Indices: 5978212--5978246 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
5978202 TCAAAAGGAC
*
5978212 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
5978230 TGAATTAAATAATAAGA
1 TGAAGTAAATAATAAGA
5978247 CCGGATGGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:5979396 original size:12 final size:11
Alignment explanation
Indices: 5979369--5979435 Score: 53
Period size: 12 Copynumber: 5.7 Consensus size: 11
5979359 CGTTACTTGA
*
5979369 ATTCTGTTCTG
1 ATTCTGATCTG
5979380 ATTCTGATCTGG
1 ATTCTGATCT-G
*
5979392 ATTCTGTTCTG
1 ATTCTGATCTG
*
5979403 ATATCTGATATG
1 AT-TCTGATCTG
* *
5979415 AATTCTGTTTTG
1 -ATTCTGATCTG
5979427 ATTTCTGAT
1 A-TTCTGAT
5979436 ATCTCCGTTT
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
11 13 0.29
12 30 0.67
13 2 0.04
ACGTcount: A:0.18, C:0.13, G:0.18, T:0.51
Consensus pattern (11 bp):
ATTCTGATCTG
Found at i:5979405 original size:47 final size:48
Alignment explanation
Indices: 5979345--5979435 Score: 116
Period size: 47 Copynumber: 1.9 Consensus size: 48
5979335 TCCGAATTGA
*
5979345 ATTCTGTTATGATA-C-GTTACTTGAATTCTGTTCTGA-TTCTGATCTGG
1 ATTCTGTTATGATATCTGATA--TGAATTCTGTTCTGATTTCTGATCTGG
* *
5979392 ATTCTGTTCTGATATCTGATATGAATTCTGTTTTGATTTCTGAT
1 ATTCTGTTATGATATCTGATATGAATTCTGTTCTGATTTCTGAT
5979436 ATCTCCGTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
47 27 0.71
48 8 0.21
49 3 0.08
ACGTcount: A:0.20, C:0.13, G:0.18, T:0.49
Consensus pattern (48 bp):
ATTCTGTTATGATATCTGATATGAATTCTGTTCTGATTTCTGATCTGG
Found at i:5979419 original size:24 final size:23
Alignment explanation
Indices: 5979366--5979437 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 23
5979356 ATACGTTACT
*
5979366 TGAATTCTGTTCTGATTCTGATC
1 TGAATTCTGTTCTGATTCTGATA
*
5979389 TGGATTCTGTTCTGATATCTGATA
1 TGAATTCTGTTCTGAT-TCTGATA
*
5979413 TGAATTCTGTTTTGATTTCTGATA
1 TGAATTCTGTTCTGA-TTCTGATA
5979437 T
1 T
5979438 CTCCGTTTAC
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
23 15 0.35
24 27 0.63
25 1 0.02
ACGTcount: A:0.19, C:0.12, G:0.18, T:0.50
Consensus pattern (23 bp):
TGAATTCTGTTCTGATTCTGATA
Found at i:5983060 original size:20 final size:20
Alignment explanation
Indices: 5983035--5983073 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
5983025 CTAGATGAAT
* *
5983035 AAAGAACGAATATAGAAAAC
1 AAAGAACAAAGATAGAAAAC
5983055 AAAGAACAAAGATAGAAAA
1 AAAGAACAAAGATAGAAAA
5983074 ACTTAACCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.69, C:0.08, G:0.15, T:0.08
Consensus pattern (20 bp):
AAAGAACAAAGATAGAAAAC
Found at i:5997392 original size:22 final size:23
Alignment explanation
Indices: 5997351--5997398 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
5997341 ATTTTTTTTC
* *
5997351 AAAAACAAAAACAAAAAAAGGCA
1 AAAAAAAAAAACAAAAAAAGCCA
5997374 AAAAAAAAAAAC-AAAAAAGCCA
1 AAAAAAAAAAACAAAAAAAGCCA
5997396 AAA
1 AAA
5997399 TTTTAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 12 0.52
23 11 0.48
ACGTcount: A:0.81, C:0.12, G:0.06, T:0.00
Consensus pattern (23 bp):
AAAAAAAAAAACAAAAAAAGCCA
Found at i:6001252 original size:51 final size:51
Alignment explanation
Indices: 6001190--6001312 Score: 246
Period size: 51 Copynumber: 2.4 Consensus size: 51
6001180 AGGATTAGAT
6001190 TTATTATTTTATTAGGAATTAAGGTTGGGTTAAAAGTATTATCTTTAGTTA
1 TTATTATTTTATTAGGAATTAAGGTTGGGTTAAAAGTATTATCTTTAGTTA
6001241 TTATTATTTTATTAGGAATTAAGGTTGGGTTAAAAGTATTATCTTTAGTTA
1 TTATTATTTTATTAGGAATTAAGGTTGGGTTAAAAGTATTATCTTTAGTTA
6001292 TTATTATTTTATTAGGAATTA
1 TTATTATTTTATTAGGAATTA
6001313 GAGTTAAGAT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 72 1.00
ACGTcount: A:0.32, C:0.02, G:0.16, T:0.50
Consensus pattern (51 bp):
TTATTATTTTATTAGGAATTAAGGTTGGGTTAAAAGTATTATCTTTAGTTA
Found at i:6003119 original size:17 final size:17
Alignment explanation
Indices: 6003098--6003133 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
6003088 AAAAATTTAT
6003098 TAAAAAT-TAGTAATTA
1 TAAAAATATAGTAATTA
*
6003114 TAAAAATATATTAATTA
1 TAAAAATATAGTAATTA
6003131 TAA
1 TAA
6003134 CATAAATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 7 0.39
17 11 0.61
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
TAAAAATATAGTAATTA
Found at i:6003753 original size:24 final size:24
Alignment explanation
Indices: 6003726--6003777 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 24
6003716 ATAATTAAAA
*
6003726 TTTTAA-ATATATGTGCAATTAAGT
1 TTTTAATAAATATGTGCAATTAA-T
*
6003750 TTTTAATTAAATATGTGTAATTAAT
1 TTTTAA-TAAATATGTGCAATTAAT
6003775 TTT
1 TTT
6003778 AGTTTCACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.25
25 4 0.17
26 14 0.58
ACGTcount: A:0.37, C:0.02, G:0.10, T:0.52
Consensus pattern (24 bp):
TTTTAATAAATATGTGCAATTAAT
Found at i:6011047 original size:64 final size:64
Alignment explanation
Indices: 6010979--6011100 Score: 183
Period size: 64 Copynumber: 1.9 Consensus size: 64
6010969 ATTGTTCAAG
* * * *
6010979 GTGTATCGATGCACATG-AGGTGTATCGATGCACTCCTTTAAAATAAAAACATCGAATGCCATTA
1 GTGTATCGATGCACAAGTA-GTGCATCGATGCACCCCCTTAAAATAAAAACATCGAATGCCATTA
*
6011043 GTGTATCGATGCACAAGTAGTGCATCGATGCACCCCCTTAAAATACAAACATCGAATG
1 GTGTATCGATGCACAAGTAGTGCATCGATGCACCCCCTTAAAATAAAAACATCGAATG
6011101 GGATTTATGT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
64 51 0.98
65 1 0.02
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.25
Consensus pattern (64 bp):
GTGTATCGATGCACAAGTAGTGCATCGATGCACCCCCTTAAAATAAAAACATCGAATGCCATTA
Found at i:6011118 original size:64 final size:64
Alignment explanation
Indices: 6010979--6011141 Score: 172
Period size: 64 Copynumber: 2.5 Consensus size: 64
6010969 ATTGTTCAAG
* * * * *
6010979 GTGTATCGATGCACATGA-GGTGTATCGATGCACTCCTTTAAAATAAAAACATCGAATGCCATTA
1 GTGTATCGATGCA-AAGATAGTGCATCGATGCACCCCCTTAAAATAAAAACATCGAATGCCATTA
* **
6011043 GTGTATCGATGCACAAG-TAGTGCATCGATGCACCCCCTTAAAATACAAACATCGAATGGGATTT
1 GTGTATCGATGCA-AAGATAGTGCATCGATGCACCCCCTTAAAATAAAAACATCGAATGCCA-TT
6011107 A
64 A
* *
6011108 -TGTA-CTGATGCATAGATTGTGCATCGATGCACCC
1 GTGTATC-GATGCAAAGATAGTGCATCGATGCACCC
6011142 GTCAAGGGAT
Statistics
Matches: 85, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
63 3 0.04
64 79 0.93
65 3 0.04
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (64 bp):
GTGTATCGATGCAAAGATAGTGCATCGATGCACCCCCTTAAAATAAAAACATCGAATGCCATTA
Found at i:6011736 original size:18 final size:18
Alignment explanation
Indices: 6011713--6011785 Score: 92
Period size: 18 Copynumber: 3.9 Consensus size: 18
6011703 AGGGATTATC
6011713 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
* *
6011731 AGTGGTTCTTCGGAACAAT
1 AGTGGTCCTTCGGGAC-AT
*
6011750 CAGTGGTCCTTTGGGACAT
1 -AGTGGTCCTTCGGGACAT
*
6011769 AGTGGTCATTCGGGACA
1 AGTGGTCCTTCGGGACA
6011786 AATATTCAGT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
18 29 0.63
19 4 0.09
20 13 0.28
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.29
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:6013209 original size:23 final size:23
Alignment explanation
Indices: 6013183--6013237 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
6013173 TTGGTAAGAG
*
6013183 TTGACCGTTGACCGGTCAGACAA
1 TTGACCGTTGACCGGTCAAACAA
* *
6013206 TTGACTGTTGACCGGTCAAATAA
1 TTGACCGTTGACCGGTCAAACAA
6013229 TTGACCGTT
1 TTGACCGTT
6013238 TACTTTGACC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (23 bp):
TTGACCGTTGACCGGTCAAACAA
Found at i:6016498 original size:13 final size:16
Alignment explanation
Indices: 6016463--6016492 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6016453 ATTATAAAGA
6016463 AATTAAAGAATAATAT
1 AATTAAAGAATAATAT
6016479 AATTAAAGAA-AATA
1 AATTAAAGAATAATA
6016493 AATAAACATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (16 bp):
AATTAAAGAATAATAT
Found at i:6020527 original size:28 final size:28
Alignment explanation
Indices: 6020495--6020548 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
6020485 ATGAGTGAAT
*
6020495 AGGTTAGATCGGATCAATTCAGGTCAGC
1 AGGTTAGAGCGGATCAATTCAGGTCAGC
* * *
6020523 AGGTTAGAGCGGTTCGATTTAGGTCA
1 AGGTTAGAGCGGATCAATTCAGGTCA
6020549 ATCAAATCGG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
AGGTTAGAGCGGATCAATTCAGGTCAGC
Found at i:6029580 original size:27 final size:27
Alignment explanation
Indices: 6029542--6029595 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
6029532 TTTGAGTTGA
6029542 AATTCTACATGCCCACAAAGGCCTAGG
1 AATTCTACATGCCCACAAAGGCCTAGG
6029569 AATTCTACATGCCCACAAAGGCCTAGG
1 AATTCTACATGCCCACAAAGGCCTAGG
6029596 TGAAAAAGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.30, G:0.19, T:0.19
Consensus pattern (27 bp):
AATTCTACATGCCCACAAAGGCCTAGG
Found at i:6038959 original size:21 final size:21
Alignment explanation
Indices: 6038926--6038965 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
6038916 AGATTGTGCA
*
6038926 GGGGGTACAGATTTCCCCTTG
1 GGGGGTACAGATTCCCCCTTG
6038947 GGGGGTATC-GATTCCCCCT
1 GGGGGTA-CAGATTCCCCCT
6038966 AAATGAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.12, C:0.28, G:0.33, T:0.28
Consensus pattern (21 bp):
GGGGGTACAGATTCCCCCTTG
Found at i:6039964 original size:24 final size:24
Alignment explanation
Indices: 6039911--6039976 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
6039901 TAATCTTATA
* *
6039911 TGGCACTACGGTGC-ATTTCTACG
1 TGGCACTTCGGTGCAAATTCTACG
* *
6039934 CGACACTTCGGTGCAAATTCTACG
1 TGGCACTTCGGTGCAAATTCTACG
6039958 TGGCACTTCGGTGCAAATT
1 TGGCACTTCGGTGCAAATT
6039977 TATACGAGCT
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
23 11 0.31
24 25 0.69
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (24 bp):
TGGCACTTCGGTGCAAATTCTACG
Found at i:6042561 original size:6 final size:6
Alignment explanation
Indices: 6042543--6042575 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
6042533 GGAAAGAGAG
6042543 GGTGGA CGGTGGA GGTGGA GGTGGA GGTGGA GG
1 GGTGGA -GGTGGA GGTGGA GGTGGA GGTGGA GG
6042576 AAGAGAAGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.15, C:0.03, G:0.67, T:0.15
Consensus pattern (6 bp):
GGTGGA
Found at i:6054805 original size:19 final size:19
Alignment explanation
Indices: 6054783--6054830 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
6054773 ACCGGTTTGG
*
6054783 ACCGGTCAACCCGGTTCAA
1 ACCGGTCAAACCGGTTCAA
* *
6054802 ACCGGTCAAACCGTTTCAG
1 ACCGGTCAAACCGGTTCAA
*
6054821 ACCGATCAAA
1 ACCGGTCAAA
6054831 AACCGTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.31, C:0.33, G:0.19, T:0.17
Consensus pattern (19 bp):
ACCGGTCAAACCGGTTCAA
Found at i:6059072 original size:4 final size:4
Alignment explanation
Indices: 6059063--6059098 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
6059053 TCTATATCTA
*
6059063 TATG TATG TATG TATG CATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG
6059099 CAAAGTTGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.25, C:0.03, G:0.25, T:0.47
Consensus pattern (4 bp):
TATG
Found at i:6059637 original size:179 final size:179
Alignment explanation
Indices: 6059272--6060012 Score: 676
Period size: 179 Copynumber: 4.0 Consensus size: 179
6059262 TGTGGATGCT
* * * * *
6059272 GTTACATTATAATTATCGGTTTTGATG-TTTTGAGGATTGATGCTTATTATAAATGTATCAACAC
1 GTTACATTATAATTATTGGTTTCGATGTTTTTG-GGATCGATACTTATTATAAATGTATCGACAC
* * **
6059336 TTTATGCGTGCACCTCGTTGGACATTCATTCTGGACAAAAAGTATTC-ATACATTATGTTGAACT
65 TTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTA-TCGATACA--AT-TTAAAAA
** *** *** * * ** * *
6059400 A-T-TTTATA-ATTAAACTGGTATATT-TCTACCGGTTACATTG-TA-AATTTACCT
126 AGTATCGATACATTATGTTGACCTATTCTCT--C-ATTAAACAGATATATTTTACCG
* *
6059451 ATTACATTATAATTATTGGTTTCGATGTTTTTGGGATCGATACTTATTATAAATGTATTGACACT
1 GTTACATTATAATTATTGGTTTCGATGTTTTTGGGATCGATACTTATTATAAATGTATCGACACT
* *
6059516 TTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAACGTATCGACACAATTTAAAAAAGTAT
66 TTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTATCGATACAATTTAAAAAAGTAT
6059581 CGATACATTATGTTGACCTATTCTCTCATTAAAC-GATATATTTATACCG
131 CGATACATTATGTTGACCTATTCTCTCATTAAACAGATATATTT-TACCG
** *
6059630 GTTACATTGTAAATTTACCTATTACTTTATAATTATCAGTTTCGATGTTTTTGGGATCGATACTT
1 GTTACA-T-T--A--TA---ATTA---T-TGGTT-TC-G-AT-G-T--TTTTGGGATCGATACTT
*
6059695 ATTATAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTATGGACAAAAAGTATC
46 ATTATAAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTATC
*
6059760 GATACAATTTAAAAAAGTATCGATACATTATGTTGACCTATTCTCTCATTAAACTGATATATTTT
111 GATACAATTTAAAAAAGTATCGATACATTATGTTGACCTATTCTCTCATTAAACAGATATATTTT
*
6059825 ACCT
176 ACCG
* * * * * **
6059829 ATTACTTTATAATAATCGGTTTCTATG-TTTTGAGGATCGATACTTACAATAAATGTATCGACAC
1 GTTACATTATAATTATTGGTTTCGATGTTTTTG-GGATCGATACTTATTATAAATGTATCGACAC
* * * * *
6059893 TTTATGCATGCAGCTCGTTTGGTAATCATTCTGGACAAAAAGTATCGATACAATTTAGAAAAA-T
65 TTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTATCGATACAATTTA-AAAAAGT
* * * *
6059957 ATCGATATATTATGTTGACCTATTTTCTCATAAAACATATATATTTTTACCG
129 ATCGATACATTATGTTGACCTATTCTCTCATTAAACAGATATA-TTTTACCG
6060009 GTTA
1 GTTA
6060013 TATTGTAAAT
Statistics
Matches: 471, Mismatches: 58, Indels: 65
0.79 0.10 0.11
Matches are distributed among these distances:
176 6 0.01
177 9 0.02
178 15 0.03
179 235 0.50
180 24 0.05
181 1 0.00
182 1 0.00
183 2 0.00
185 4 0.01
186 2 0.00
187 1 0.00
188 4 0.01
190 3 0.01
191 1 0.00
192 3 0.01
193 4 0.01
194 1 0.00
195 2 0.00
196 1 0.00
197 2 0.00
198 1 0.00
199 140 0.30
200 9 0.02
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.39
Consensus pattern (179 bp):
GTTACATTATAATTATTGGTTTCGATGTTTTTGGGATCGATACTTATTATAAATGTATCGACACT
TTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTATCGATACAATTTAAAAAAGTAT
CGATACATTATGTTGACCTATTCTCTCATTAAACAGATATATTTTACCG
Found at i:6059715 original size:199 final size:199
Alignment explanation
Indices: 6059372--6060047 Score: 878
Period size: 199 Copynumber: 3.5 Consensus size: 199
6059362 CATTCTGGAC
* * * * *
6059372 AAAAAGTATTC-ATACATTATGTTGAACTATTTTATAATTAAACTGGTATATTTCTACCGGTTAC
1 AAAAAGTA-TCGATACATTATGTTGACCTATTCTCTCATTAAACTGATATATTT-TACCGGTTAC
* *
6059436 ATTGTAAATTTACCTATTACATTATAATTATTGGTTTCGATGTTTTTGGGATCGATACTTATTAT
64 ATTGTAAATTTACCTATTACTTTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTAT
* * *
6059501 AAATGTATTGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAACGTATCGACAC
129 AAATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTATCGATAC
6059566 AATTTA
194 AATTTA
6059572 AAAAAGTATCGATACATTATGTTGACCTATTCTCTCATTAAAC-GATATATTTATACCGGTTACA
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTCATTAAACTGATATATTT-TACCGGTTACA
*
6059636 TTGTAAATTTACCTATTACTTTATAATTATCAGTTTCGATGTTTTTGGGATCGATACTTATTATA
65 TTGTAAATTTACCTATTACTTTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATA
*
6059701 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTATGGACAAAAAGTATCGATACA
130 AATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTATCGATACA
6059766 ATTTA
195 ATTTA
6059771 AAAAAGTATCGATACATTATGTTGACCTATTCTCTCATTAAACTG----A---TA-----T--A-
1 AAAAAGTATCGATACATTATGTTGACCTATTCTCTCATTAAACTGATATATTTTACCGGTTACAT
* * ** **
6059821 --T---TTTACCTATTACTTTATAATAATCGGTTTCTATGTTTTGAGGATCGATACTTACAATAA
66 TGTAAATTTACCTATTACTTTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATAA
* * * * *
6059881 ATGTATCGACACTTTATGCATGCAGCTCGTTTGGTAATCATTCTGGACAAAAAGTATCGATACAA
131 ATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTATCGATACAA
6059946 TTTA
196 TTTA
* * *
6059950 GAAAAA-TATCGATATATTATGTTGACCTATTTTCTCATAAAACAT-ATATATTTTTACCGGTTA
1 -AAAAAGTATCGATACATTATGTTGACCTATTCTCTCATTAAAC-TGATATA-TTTTACCGGTTA
*
6060013 TATTGTAAATTTACCTATTACTTTATAATGTATCG
63 CATTGTAAATTTACCTATTACTTTATAAT-TATCG
6060048 ATACTTATGA
Statistics
Matches: 420, Mismatches: 30, Indels: 51
0.84 0.06 0.10
Matches are distributed among these distances:
179 149 0.35
180 6 0.01
182 1 0.00
183 1 0.00
185 1 0.00
187 3 0.01
192 3 0.01
194 1 0.00
196 1 0.00
197 1 0.00
199 192 0.46
200 57 0.14
201 4 0.01
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (199 bp):
AAAAAGTATCGATACATTATGTTGACCTATTCTCTCATTAAACTGATATATTTTACCGGTTACAT
TGTAAATTTACCTATTACTTTATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTATTATAA
ATGTATCGACACTTTATGCGTGCACCTCGTTGGGCATTCATTCTGGACAAAAAGTATCGATACAA
TTTA
Found at i:6059973 original size:378 final size:377
Alignment explanation
Indices: 6059273--6060046 Score: 981
Period size: 378 Copynumber: 2.0 Consensus size: 377
6059263 GTGGATGCTG
* * * * *
6059273 TTACATTATAATTATCGGTTTTGATGTTTTGAGGATTGATGCTTATTATAAATGTATCAACACTT
1 TTACTTTATAATTATCAGTTTCGATGTTTTGAGGATCGATACTTATTATAAATGTATCAACACTT
* * **
6059338 TATGCGTGCACCTCGTTGGACATTCATTCTGGACAAAAAGTATTCATACATTATGTTGAACTATT
66 TATGCGTGCACCTCGTTGGACATTCATTATGGACAAAAAGTATTCATACA-TATGTTAAAAAATT
** ** * * * * *
6059403 TTATAATTAAACTGGTATATTTCTACCGGTTACATTGTAAATTTACCTATTACATTATAATTATT
130 CGATAATTAAACTGACATATTTCTA-CGATTAAACTGTAAATTTACCTATTACATTATAATAATC
** * *
6059468 GGTTTCGATGTTTTTGGGATCGATACTTATTATAAATGTATTGACACTTTATGCGTGCACCTCGT
194 GGTTTCGATGTTTTTGGGATCGATACTTACAATAAATGTATCGACACTTTATGCATGCACCTCGT
* *
6059533 TGGGCATTCATTCTGGACAAAACGTATCGACACAATTTAAAAAAGTATCGATACATTATGTTGAC
259 TGGGCAATCATTCTGGACAAAAAGTATCGACACAATTTAAAAAAGTATCGATACATTATGTTGAC
*
6059598 CTATTCTCTCATTAAAC-GATATATTTATACCGGTTACATTGTAAATTTACCTA
324 CTATTCTCTCATAAAACAGATATATTTATACCGGTTACATTGTAAATTTACCTA
*
6059651 TTACTTTATAATTATCAGTTTCGATGTTTTTG-GGATCGATACTTATTATAAATGTATCGACACT
1 TTACTTTATAATTATCAGTTTCGATG-TTTTGAGGATCGATACTTATTATAAATGTATCAACACT
*
6059715 TTATGCGTGCACCTCGTTGGGCATTCATTATGGACAAAAAGTA-TCGATACA-AT-TTAAAAAAG
65 TTATGCGTGCACCTCGTTGGACATTCATTATGGACAAAAAGTATTC-ATACATATGTTAAAAAA-
*** * * *
6059777 TATCGATACATTATGTTGACCTATTCTCT-C-ATTAAACTGATATATTTTACCTATTACTTTATA
128 T-TCGATA-ATTAAACTGACATATT-TCTACGATTAAACTG-TA-AATTTACCTATTACATTATA
*
6059840 ATAATCGGTTTCTATG-TTTTGAGGATCGATACTTACAATAAATGTATCGACACTTTATGCATGC
188 ATAATCGGTTTCGATGTTTTTG-GGATCGATACTTACAATAAATGTATCGACACTTTATGCATGC
* * * * *
6059904 AGCTCGTTTGGTAATCATTCTGGACAAAAAGTATCGATACAATTTAGAAAAA-TATCGATATATT
252 ACCTCGTTGGGCAATCATTCTGGACAAAAAGTATCGACACAATTTA-AAAAAGTATCGATACATT
* * * *
6059968 ATGTTGACCTATTTTCTCATAAAACATATATATTTTTACCGGTTATATTGTAAATTTACCTA
316 ATGTTGACCTATTCTCTCATAAAACAGATATATTTATACCGGTTACATTGTAAATTTACCTA
6060030 TTACTTTATAATGTATC
1 TTACTTTATAAT-TATC
6060047 GATACTTATG
Statistics
Matches: 341, Mismatches: 43, Indels: 22
0.84 0.11 0.05
Matches are distributed among these distances:
375 5 0.01
376 9 0.03
377 14 0.04
378 251 0.74
379 58 0.17
380 4 0.01
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (377 bp):
TTACTTTATAATTATCAGTTTCGATGTTTTGAGGATCGATACTTATTATAAATGTATCAACACTT
TATGCGTGCACCTCGTTGGACATTCATTATGGACAAAAAGTATTCATACATATGTTAAAAAATTC
GATAATTAAACTGACATATTTCTACGATTAAACTGTAAATTTACCTATTACATTATAATAATCGG
TTTCGATGTTTTTGGGATCGATACTTACAATAAATGTATCGACACTTTATGCATGCACCTCGTTG
GGCAATCATTCTGGACAAAAAGTATCGACACAATTTAAAAAAGTATCGATACATTATGTTGACCT
ATTCTCTCATAAAACAGATATATTTATACCGGTTACATTGTAAATTTACCTA
Found at i:6072617 original size:22 final size:22
Alignment explanation
Indices: 6072589--6072643 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
6072579 TACGCGATCC
*
6072589 TTCGGGACATACTCATAGGTCA
1 TTCGGGACATACTCACAGGTCA
*
6072611 TTCGGGACATACTCACAGGTCC
1 TTCGGGACATACTCACAGGTCA
6072633 TTCGGGACATA
1 TTCGGGACATA
6072644 TTTCACATGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (22 bp):
TTCGGGACATACTCACAGGTCA
Found at i:6074159 original size:23 final size:23
Alignment explanation
Indices: 6074133--6074182 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
6074123 TGTGTTTTCC
*
6074133 TCCAAGCTTTGTATTCTTGTCTA
1 TCCAAGCTTTGTATTATTGTCTA
6074156 TCCAAGCTTTGTATTATTGTCTA
1 TCCAAGCTTTGTATTATTGTCTA
6074179 TCCA
1 TCCA
6074183 CCTCTGACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.46
Consensus pattern (23 bp):
TCCAAGCTTTGTATTATTGTCTA
Found at i:6075263 original size:21 final size:21
Alignment explanation
Indices: 6075230--6075282 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
6075220 GTATATTTAA
** *
6075230 TCGATACAATTAAGAAATGTC
1 TCGATACTTTTAAGAAAGGTC
** *
6075251 TCGATACTTTTAAGTCAGGTG
1 TCGATACTTTTAAGAAAGGTC
6075272 TCGATACTTTT
1 TCGATACTTTT
6075283 GATAGGATAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (21 bp):
TCGATACTTTTAAGAAAGGTC
Found at i:6075561 original size:183 final size:183
Alignment explanation
Indices: 6075341--6075997 Score: 962
Period size: 183 Copynumber: 3.6 Consensus size: 183
6075331 CATACAAAGT
* * * *
6075341 ATCGATACATTCAACATAAT-CGGTAGTGCTTTACCGGTTTTATCATAATGAAACCGGTTTTGTC
1 ATCGATACTTTCAACAT-ATCCGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGGTTTTATC
* * *
6075405 ATATTTTTACCTATTATATTGTTATGGATCGATACATTTTTATAAAATATCGATACTTTATAGGC
65 ATATTTTTACCTATTATATTATTATGTATCGATACATTTTTATAAAATATCGATACTTTTTAGGC
* * * *
6075470 GCTATTACTGCTTTTCTTTTAAATTCCAAAAGTGTCGATACTTATTTCAATGAA
130 TCTAGTACTACTTTTCTTTTAAATTCCAAAAGTGTCGATACTTATTTCAATGGA
*
6075524 ATCGATACTTTCAACATATCTGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGGTTTTATCA
1 ATCGATACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGGTTTTATCA
* *
6075589 TATTTTTACCTGTTATATTATTGTGTATCGATACATTTTTAT-AAATGATCGATACTTTTTAGGC
66 TATTTTTACCTATTATATTATTATGTATCGATACATTTTTATAAAAT-ATCGATACTTTTTAGGC
* * * *
6075653 TCTAGTACTACTTGTT-TTTAAAATTCCAAAAGTGTTGATGCTTATTTAAATGGA
130 TCTAGTACTACTT-TTCTTTTAAATTCCAAAAGTGTCGATACTTATTTCAATGGA
* ** *
6075707 ATTGATACTTTCAACATATCCAATAGCACTTTACCGGTTTTGTCATAATGAAACCGGTTTTATCA
1 ATCGATACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGGTTTTATCA
* * *
6075772 TATTTTTACATGTTATATTATTATGTATCGATACATTTTTATAAATTATCGATACTTTTTAGGCT
66 TATTTTTACCTATTATATTATTATGTATCGATACATTTTTATAAAATATCGATACTTTTTAGGCT
*
6075837 CTAGTACTACTTTTCTTTTAAATTCCAAAAGTGTCGATACTTATTTCATTGGA
131 CTAGTACTACTTTTCTTTTAAATTCCAAAAGTGTCGATACTTATTTCAATGGA
* * * *
6075890 ATC-ATTACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATATTGAACCCGATTTTCTC
1 ATCGA-TACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGGTTTTATC
*
6075954 ATATTTTTACCTAATATATTATTATGTATCGATACATATTTTAT
65 ATATTTTTACCTATTATATTATTATGTATCGATACAT-TTTTAT
6075998 TTATATCGAT
Statistics
Matches: 425, Mismatches: 42, Indels: 13
0.89 0.09 0.03
Matches are distributed among these distances:
182 9 0.02
183 405 0.95
184 11 0.03
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (183 bp):
ATCGATACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATAATGAAACCGGTTTTATCA
TATTTTTACCTATTATATTATTATGTATCGATACATTTTTATAAAATATCGATACTTTTTAGGCT
CTAGTACTACTTTTCTTTTAAATTCCAAAAGTGTCGATACTTATTTCAATGGA
Found at i:6075997 original size:22 final size:21
Alignment explanation
Indices: 6075967--6076009 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
6075957 TTTTTACCTA
*
6075967 ATATATTATTATGTATCGATAC
1 ATATATTATT-TATATCGATAC
*
6075989 ATATTTTATTTATATCGATAC
1 ATATATTATTTATATCGATAC
6076010 GTACCGACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.35, C:0.09, G:0.07, T:0.49
Consensus pattern (21 bp):
ATATATTATTTATATCGATAC
Found at i:6078512 original size:3 final size:3
Alignment explanation
Indices: 6078506--6078537 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
6078496 AATATTATCC
6078506 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
6078538 TGCTAAAGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:6083225 original size:2 final size:2
Alignment explanation
Indices: 6083218--6083253 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
6083208 TATAAAAATG
6083218 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6083254 TTTAATCAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6085424 original size:23 final size:23
Alignment explanation
Indices: 6085397--6085449 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
6085387 TAGTGCTCGA
* *
6085397 TTGGTTGCTTCTGTTATTGGTCT
1 TTGGTTGCTTATGTTATTGGTAT
*
6085420 TTGGTTGCTTATGTTGTTGGTAT
1 TTGGTTGCTTATGTTATTGGTAT
6085443 TTGGTTG
1 TTGGTTG
6085450 TTGCCGTCGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.06, C:0.08, G:0.30, T:0.57
Consensus pattern (23 bp):
TTGGTTGCTTATGTTATTGGTAT
Found at i:6086131 original size:20 final size:19
Alignment explanation
Indices: 6086091--6086133 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
6086081 TACTTATATT
*
6086091 TATTTGTTTTCAAACCATA
1 TATTTGTTTTCAAAACATA
6086110 TATTATGTTTTCTAAAAC-TA
1 TATT-TGTTTTC-AAAACATA
6086130 TATT
1 TATT
6086134 GTGTATATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 4 0.19
20 13 0.62
21 4 0.19
ACGTcount: A:0.33, C:0.12, G:0.05, T:0.51
Consensus pattern (19 bp):
TATTTGTTTTCAAAACATA
Found at i:6086182 original size:24 final size:23
Alignment explanation
Indices: 6086154--6086228 Score: 80
Period size: 24 Copynumber: 3.1 Consensus size: 23
6086144 TCCAAATTAT
6086154 TATTTTATAAAACTATATTATATA
1 TATTTT-TAAAACTATATTATATA
* *
6086178 TATTTTCAAGACTATACTTAT-TA
1 TATTTTTAAAACTATA-TTATATA
*
6086201 TATTTTTCAAAATTATATATATATA
1 TATTTTT-AAAACTATAT-TATATA
6086226 TAT
1 TAT
6086229 ATATATATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
23 17 0.40
24 20 0.48
25 5 0.12
ACGTcount: A:0.41, C:0.07, G:0.01, T:0.51
Consensus pattern (23 bp):
TATTTTTAAAACTATATTATATA
Found at i:6086193 original size:23 final size:23
Alignment explanation
Indices: 6086162--6086358 Score: 86
Period size: 24 Copynumber: 8.8 Consensus size: 23
6086152 ATTATTTTAT
6086162 AAAACTATATTATATATATTTTC
1 AAAACTATATTATATATATTTTC
*
6086185 AAGACTATACTTAT-TATATTTTTC
1 AAAACTATA-TTATATATA-TTTTC
*
6086209 AAAATTATATATATATATATATATAT-
1 AAAACTATAT-TATATATAT-T-T-TC
* * *
6086235 ATATA-TATATTA-AAACTATATT-
1 A-AAACTATATTATATA-TATTTTC
* *
6086257 -ATA-TATA-TATATATATATTCC
1 AAAACTATATTATATATAT-TTTC
*
6086278 AAAAC--TA-TAT-T-TATTTTA
1 AAAACTATATTATATATATTTTC
*
6086296 AAAATTATATATATATATATATTTC
1 AAAACTATAT-TATATATAT-TTTC
6086321 AAAACTATA-T-T-T-TATTTTC
1 AAAACTATATTATATATATTTTC
*
6086340 AAAACTATACTATATATAT
1 AAAACTATATTATATATAT
6086359 AACCAAAATA
Statistics
Matches: 134, Mismatches: 15, Indels: 50
0.67 0.08 0.25
Matches are distributed among these distances:
18 6 0.04
19 21 0.16
20 17 0.13
21 7 0.05
22 8 0.06
23 19 0.14
24 25 0.19
25 21 0.16
26 7 0.05
27 3 0.02
ACGTcount: A:0.45, C:0.07, G:0.01, T:0.47
Consensus pattern (23 bp):
AAAACTATATTATATATATTTTC
Found at i:6086221 original size:2 final size:2
Alignment explanation
Indices: 6086214--6086274 Score: 83
Period size: 2 Copynumber: 31.5 Consensus size: 2
6086204 TTTTCAAAAT
*
6086214 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA -A AA CTA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA
6086255 T- TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
6086275 TCCAAAACTA
Statistics
Matches: 54, Mismatches: 1, Indels: 8
0.86 0.02 0.13
Matches are distributed among these distances:
1 3 0.06
2 50 0.93
3 1 0.02
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:6086265 original size:32 final size:32
Alignment explanation
Indices: 6086220--6086288 Score: 115
Period size: 30 Copynumber: 2.2 Consensus size: 32
6086210 AAATTATATA
6086220 TATATATATATATATATATATATATT--AAAAC
1 TATAT-TATATATATATATATATATTCCAAAAC
6086251 TATATTATATATATATATATATATTCCAAAAC
1 TATATTATATATATATATATATATTCCAAAAC
6086283 TATATT
1 TATATT
6086289 TATTTTAAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
30 20 0.56
31 5 0.14
32 11 0.31
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (32 bp):
TATATTATATATATATATATATATTCCAAAAC
Found at i:6086305 original size:45 final size:44
Alignment explanation
Indices: 6086258--6086359 Score: 161
Period size: 43 Copynumber: 2.3 Consensus size: 44
6086248 AACTATATTA
*
6086258 TATATATATATATATATTCCAAAACTATA-TTTATTTTAAAAAT
1 TATATATATATATATATTTCAAAACTATATTTTATTTTAAAAAT
* *
6086301 TATATATATATATATATTTCAAAACTATATTTTATTTTCAAAAC
1 TATATATATATATATATTTCAAAACTATATTTTATTTTAAAAAT
6086345 TATACTATATATATA
1 TATA-TATATATATA
6086360 ACCAAAATAA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
43 28 0.52
44 16 0.30
45 10 0.19
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (44 bp):
TATATATATATATATATTTCAAAACTATATTTTATTTTAAAAAT
Found at i:6087499 original size:40 final size:40
Alignment explanation
Indices: 6087434--6087526 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 40
6087424 ATTCTAGTCT
*
6087434 TAGTATTGTAATTCCTATATCGATACCATAATTCCATTAC
1 TAGTATTGTAATTCCTATATCGATACCATAATTCCAGTAC
* **
6087474 TAGTATTGTAATTCC-AGTATTGATACTTTAATTCCAGTAC
1 TAGTATTGTAATTCCTA-TATCGATACCATAATTCCAGTAC
*
6087514 -CGATATTGTAATT
1 TAG-TATTGTAATT
6087527 TCAATATCAG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.04
40 44 0.96
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (40 bp):
TAGTATTGTAATTCCTATATCGATACCATAATTCCAGTAC
Found at i:6087525 original size:20 final size:20
Alignment explanation
Indices: 6087477--6087526 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
6087467 CCATTACTAG
**
6087477 TATTGTAATTCCAGTATTGA
1 TATTGTAATTCCAGTACCGA
6087497 TACTT-TAATTCCAGTACCGA
1 TA-TTGTAATTCCAGTACCGA
6087517 TATTGTAATT
1 TATTGTAATT
6087527 TCAATATCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 2 0.08
20 22 0.85
21 2 0.08
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (20 bp):
TATTGTAATTCCAGTACCGA
Found at i:6087742 original size:21 final size:21
Alignment explanation
Indices: 6087716--6087763 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
6087706 GTTTCCAGAT
6087716 TCGCAACACGAACATCGACCA
1 TCGCAACACGAACATCGACCA
* * *
6087737 TCGCAACACGAACTTCTACTA
1 TCGCAACACGAACATCGACCA
6087758 TCGCAA
1 TCGCAA
6087764 TGCGATTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.35, C:0.35, G:0.12, T:0.17
Consensus pattern (21 bp):
TCGCAACACGAACATCGACCA
Found at i:6087821 original size:42 final size:42
Alignment explanation
Indices: 6087764--6088224 Score: 478
Period size: 42 Copynumber: 10.8 Consensus size: 42
6087754 ACTATCGCAA
*
6087764 TGCGA-TT-TTCCAAATTCGTTGCGATAGTCCAAGTTCGCGT
1 TGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGT
*
6087804 TGCGATTTATTCCAAATTCGCGTTGCGATAGTCCAAGTT--CGT
1 TGCGATTTATTCCAAGTT--CGTTGCGATAGTCCAAGTTCGCGT
* * * *
6087846 TGCGA--TAGTCGAAGTTCGCGTTGCGATATATTCCAAATT--CGT
1 TGCGATTTATTCCAAGTT--CGTTGCG--ATAGTCCAAGTTCGCGT
* *
6087888 TGCGA--TAGTCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCGT
1 TGCGATTTATTCCAAGTT--CGTTGCGATAGTCCAAGTTCGCGT
* **
6087930 TGCGATTTATTCCAAGTTCATTGCGATAGTTAAAGTTCGCGT
1 TGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGT
* *
6087972 TGTGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGT
1 TGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGT
*
6088014 TGCGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGT
1 TGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGT
* *
6088056 TGCGATATATTCCAAATTCGTTGCGATAGTCCAAGTTCGCGT
1 TGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGT
* * *
6088098 TGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGAT
1 TGCGATTTATTCCAAGTT--CGTTGCGA--TAGTCCAAGTTC---GCG-T
* *
6088146 AGTCACGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGT
1 --T-GCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGT
6088191 TGCGATTTATTCCAAGTTCGTTGCGATAGTCCAA
1 TGCGATTTATTCCAAGTTCGTTGCGATAGTCCAA
6088225 AATCACAACG
Statistics
Matches: 366, Mismatches: 32, Indels: 44
0.83 0.07 0.10
Matches are distributed among these distances:
40 39 0.11
41 2 0.01
42 245 0.67
43 1 0.00
44 40 0.11
45 1 0.00
46 3 0.01
47 3 0.01
48 1 0.00
49 10 0.03
50 1 0.00
51 11 0.03
53 9 0.02
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (42 bp):
TGCGATTTATTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGT
Found at i:6087863 original size:63 final size:61
Alignment explanation
Indices: 6087772--6088149 Score: 458
Period size: 63 Copynumber: 6.0 Consensus size: 61
6087762 AATGCGATTT
* * *
6087772 TCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCGCGTTGCGATAG
1 TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTT--CGTTGCGATAG
* *
6087835 TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATATATTCCAAATTCGTTGCGATAG
1 TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAG
*
6087896 TCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCATTGCGATAG
1 TCCAAGTT--CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAG
** * * * * *
6087959 TTAAAGTTCGCGTTGTGATTTATTCCAAGTT--CGTTGCGA--TAGTCGAAGTTCGCGTTGCGAT
1 TCCAAGTT--CGTTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTT--CGTTGCGA-
*
6088020 TTAT
59 -TAG
* *
6088024 TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATATATTCCAAATTCGTTGCGATAG
1 TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAG
6088085 TCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAG
1 TCCAAGTT--CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAG
6088148 TC
1 TC
6088150 ACGATTTATT
Statistics
Matches: 275, Mismatches: 26, Indels: 28
0.84 0.08 0.09
Matches are distributed among these distances:
61 47 0.17
63 203 0.74
65 25 0.09
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (61 bp):
TCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAG
Found at i:6087899 original size:105 final size:106
Alignment explanation
Indices: 6087764--6088224 Score: 514
Period size: 105 Copynumber: 4.3 Consensus size: 106
6087754 ACTATCGCAA
* *
6087764 TGCGAT-T-TTCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAATTCGCGT
1 TGCGATATATTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGCGT
6087827 TGCGA-TAGTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGT
66 TGCGATTAGTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGT
* * *
6087867 TGCGATATATTCCAAATTCGTTGCGATAGTCCAAGTTCGCGTTGCGA--TAGTCGAAGTTCGCGT
1 TGCGATATATTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGCGT
* * **
6087930 TGCGATTTATTCCAAGTTCATTGCGATAGTTAAAGTTCGCGT
66 TGCGA-TTAGTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGT
* * *
6087972 TGTGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTT--CGT
1 TGCGATATATTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGCGT
* * * *
6088035 TGCGA-TAGTCGAAGTTCGCGTTGCGATATATTCCAAATT--CGT
66 TGCGATTAGTCCAAGTT--CGTTGCG--ATAGTCGAAGTTCGCGT
* *
6088077 TGCG--ATAGTCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGT
1 TGCGATATATTCCAAGTT--CGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTC--
* *
6088140 TGCGATAGTCACGATTTATTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGT
62 -GCG-T--T-GCGA-TTAGTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGT
*
6088191 TGCGATTTATTCCAAGTTCGTTGCGATAGTCCAA
1 TGCGATATATTCCAAGTTCGTTGCGATAGTCCAA
6088225 AATCACAACG
Statistics
Matches: 299, Mismatches: 32, Indels: 43
0.80 0.09 0.11
Matches are distributed among these distances:
103 43 0.14
104 1 0.00
105 174 0.58
107 17 0.06
110 2 0.01
111 1 0.00
112 9 0.03
113 1 0.00
114 32 0.11
116 19 0.06
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (106 bp):
TGCGATATATTCCAAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCCAAGTTCGCGT
TGCGATTAGTCCAAGTTCGTTGCGATAGTCGAAGTTCGCGT
Found at i:6088157 original size:30 final size:30
Alignment explanation
Indices: 6088121--6088179 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
6088111 GTTCGCGTTG
6088121 CGATTTATTCCAAGTTCGTTGCGATAGTCA
1 CGATTTATTCCAAGTTCGTTGCGATAGTCA
6088151 CGATTTATTCCAAGTTCGTTGCGATAGTC
1 CGATTTATTCCAAGTTCGTTGCGATAGTC
6088180 GAAGTTCGCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.37
Consensus pattern (30 bp):
CGATTTATTCCAAGTTCGTTGCGATAGTCA
Found at i:6088191 original size:21 final size:19
Alignment explanation
Indices: 6088159--6088224 Score: 78
Period size: 21 Copynumber: 3.3 Consensus size: 19
6088149 CACGATTTAT
6088159 TCCAAGTTCGTTGCGATAG
1 TCCAAGTTCGTTGCGATAG
* *
6088178 TCGAAGTTCGCGTTGCGATTTAT
1 TCCAAGTT--CGTTGCGA--TAG
6088201 TCCAAGTTCGTTGCGATAG
1 TCCAAGTTCGTTGCGATAG
6088220 TCCAA
1 TCCAA
6088225 AATCACAACG
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 14 0.36
21 16 0.41
23 9 0.23
ACGTcount: A:0.21, C:0.21, G:0.24, T:0.33
Consensus pattern (19 bp):
TCCAAGTTCGTTGCGATAG
Found at i:6088204 original size:72 final size:73
Alignment explanation
Indices: 6088085--6088221 Score: 258
Period size: 72 Copynumber: 1.9 Consensus size: 73
6088075 GTTGCGATAG
6088085 TCCAAGTTCGCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTC
1 TCCAAGTTC-CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTC
6088150 ACGATTTAT
65 ACGATTTAT
6088159 TCCAAGTT-CGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTC
1 TCCAAGTTCCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTC
6088222 CAAAATCACA
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
72 55 0.87
74 8 0.13
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (73 bp):
TCCAAGTTCCGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATAGTCA
CGATTTAT
Found at i:6088325 original size:6 final size:6
Alignment explanation
Indices: 6088314--6088370 Score: 62
Period size: 6 Copynumber: 9.5 Consensus size: 6
6088304 GACACGTATT
* * * *
6088314 ACCACG ACCACG ACCACA ACC-CTG ACCCCG ACCACG ACCCCG ACCCCG
1 ACCACG ACCACG ACCACG ACCAC-G ACCACG ACCACG ACCACG ACCACG
6088362 ACCACG ACC
1 ACCACG ACC
6088371 CGAGACGAGA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
5 1 0.02
6 42 0.95
7 1 0.02
ACGTcount: A:0.28, C:0.56, G:0.14, T:0.02
Consensus pattern (6 bp):
ACCACG
Found at i:6088345 original size:18 final size:18
Alignment explanation
Indices: 6088318--6088371 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 18
6088308 CGTATTACCA
* *
6088318 CGACCACGACCACAACCC
1 CGACCCCGACCACGACCC
*
6088336 TGACCCCGACCACGACCC
1 CGACCCCGACCACGACCC
6088354 CGACCCCGACCACGACCC
1 CGACCCCGACCACGACCC
6088372 GAGACGAGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.26, C:0.57, G:0.15, T:0.02
Consensus pattern (18 bp):
CGACCCCGACCACGACCC
Found at i:6089041 original size:6 final size:6
Alignment explanation
Indices: 6089020--6089071 Score: 72
Period size: 6 Copynumber: 9.0 Consensus size: 6
6089010 GTCTCGTCTC
*
6089020 GGGTC- GGGTC- GGGTCG GGGTCG GGGTCG GGGTCG GGGTCG TGGTCG
1 GGGTCG GGGTCG GGGTCG GGGTCG GGGTCG GGGTCG GGGTCG GGGTCG
*
6089066 TGGTCG
1 GGGTCG
6089072 AAGTTCGCGT
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
5 10 0.22
6 35 0.78
ACGTcount: A:0.00, C:0.17, G:0.62, T:0.21
Consensus pattern (6 bp):
GGGTCG
Found at i:6090856 original size:2 final size:2
Alignment explanation
Indices: 6090849--6090894 Score: 83
Period size: 2 Copynumber: 23.0 Consensus size: 2
6090839 TAAATTACCA
*
6090849 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
6090891 TC TC
1 TC TC
6090895 ATACACACAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:6092549 original size:2 final size:2
Alignment explanation
Indices: 6092542--6092604 Score: 126
Period size: 2 Copynumber: 31.5 Consensus size: 2
6092532 AAAGATCTCT
6092542 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6092584 TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA T
6092605 CTGCACATAT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 61 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6102435 original size:50 final size:50
Alignment explanation
Indices: 6102376--6102474 Score: 189
Period size: 50 Copynumber: 2.0 Consensus size: 50
6102366 CACATAGATC
6102376 CCTCTTCCACGTGCCCCTGAATTCTTTTATATTGCTCCACCCCCAGATTT
1 CCTCTTCCACGTGCCCCTGAATTCTTTTATATTGCTCCACCCCCAGATTT
*
6102426 CCTCTTCCACGTGCCCCTGAATTCTTTTATATTTCTCCACCCCCAGATT
1 CCTCTTCCACGTGCCCCTGAATTCTTTTATATTGCTCCACCCCCAGATT
6102475 GCTAAACTCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.16, C:0.38, G:0.09, T:0.36
Consensus pattern (50 bp):
CCTCTTCCACGTGCCCCTGAATTCTTTTATATTGCTCCACCCCCAGATTT
Found at i:6102863 original size:16 final size:15
Alignment explanation
Indices: 6102839--6102874 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
6102829 ATTATATAAA
*
6102839 ATATAATGAATTATTT
1 ATATTATGAATTA-TT
6102855 ATATTATGAATTATT
1 ATATTATGAATTATT
6102870 ATATT
1 ATATT
6102875 TTGTATTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.53
Consensus pattern (15 bp):
ATATTATGAATTATT
Found at i:6102984 original size:7 final size:7
Alignment explanation
Indices: 6102962--6102995 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
6102952 ATATATTTTT
6102962 AAAATTA
1 AAAATTA
*
6102969 ATAATTTA
1 A-AAATTA
6102977 AAAATTA
1 AAAATTA
6102984 AAAATTA
1 AAAATTA
6102991 AAAAT
1 AAAAT
6102996 CGGGTATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
AAAATTA
Found at i:6103023 original size:15 final size:15
Alignment explanation
Indices: 6103003--6103059 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
6102993 AATCGGGTAT
6103003 CGGGTACCCGATTAC
1 CGGGTACCCGATTAC
**
6103018 CGGGTACCCGCAAAATC
1 CGGGTACCCG-ATTA-C
*
6103035 CGGGTATCCGATTAC
1 CGGGTACCCGATTAC
6103050 CGGGTACCCG
1 CGGGTACCCG
6103060 TAACATCCGG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
15 20 0.59
16 4 0.12
17 10 0.29
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.18
Consensus pattern (15 bp):
CGGGTACCCGATTAC
Found at i:6103039 original size:17 final size:16
Alignment explanation
Indices: 6103003--6103071 Score: 52
Period size: 15 Copynumber: 4.3 Consensus size: 16
6102993 AATCGGGTAT
**
6103003 CGGGTACCCGATTA-C
1 CGGGTACCCGAAAATC
6103018 CGGGTACCCGCAAAATC
1 CGGGTACCCG-AAAATC
* **
6103035 CGGGTATCCGATTA-C
1 CGGGTACCCGAAAATC
*
6103050 CGGGTACCCGTAACATC
1 CGGGTACCCG-AAAATC
6103067 CGGGT
1 CGGGT
6103072 CGGGACACGG
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
15 20 0.48
16 6 0.14
17 16 0.38
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.19
Consensus pattern (16 bp):
CGGGTACCCGAAAATC
Found at i:6103046 original size:32 final size:32
Alignment explanation
Indices: 6103003--6103071 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
6102993 AATCGGGTAT
6103003 CGGGTACCCGATTACCGGGTACCCGCAAAATC
1 CGGGTACCCGATTACCGGGTACCCGCAAAATC
* * *
6103035 CGGGTATCCGATTACCGGGTACCCGTAACATC
1 CGGGTACCCGATTACCGGGTACCCGCAAAATC
6103067 CGGGT
1 CGGGT
6103072 CGGGACACGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.19
Consensus pattern (32 bp):
CGGGTACCCGATTACCGGGTACCCGCAAAATC
Found at i:6108741 original size:2 final size:2
Alignment explanation
Indices: 6108734--6108778 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
6108724 TCAATTTACA
* *
6108734 AT AT AT AT AT AA AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6108776 AT A
1 AT A
6108779 ATTCACGAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Found at i:6108946 original size:85 final size:85
Alignment explanation
Indices: 6108806--6108970 Score: 276
Period size: 85 Copynumber: 1.9 Consensus size: 85
6108796 ACGACACACG
* *
6108806 AATGTGTGTCATTTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATAAATGAATG
1 AATGTGTGTCATCTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATAAATGAACG
6108871 TCATAAATTTATGACACCCA
66 TCATAAATTTATGACACCCA
* * **
6108891 AATGTGTGTCATCTTCATTTATGACGGGGGCTTCAATGACGCGCAATGTATGTCATAAATGCGCG
1 AATGTGTGTCATCTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATAAATGAACG
6108956 TCATAAATTTATGAC
66 TCATAAATTTATGAC
6108971 GTACAGTTGC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
85 74 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (85 bp):
AATGTGTGTCATCTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATAAATGAACG
TCATAAATTTATGACACCCA
Found at i:6108988 original size:85 final size:85
Alignment explanation
Indices: 6108814--6108990 Score: 228
Period size: 85 Copynumber: 2.1 Consensus size: 85
6108804 CGAATGTGTG
* *
6108814 TCATTTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATAAATGAATGTCATAAAT
1 TCATCTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATAAATGAACGTCATAAAT
* * **
6108879 TTATGACACCCAAATGTGTG
66 TTATGACACACAAATGCGCA
* * **
6108899 TCATCTTCATTTATGACGGGGGCTTCAATGACGCGCAATGTATGTCATAAATGCGCGTCATAAAT
1 TCATCTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATAAATGAACGTCATAAAT
** **
6108964 TTATGACGTACAGTTGCGCA
66 TTATGACACACAAATGCGCA
6108984 TCATCTT
1 TCATCTT
6108991 AAATTCATGT
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
85 78 1.00
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (85 bp):
TCATCTTCATTTATGACGGGGGCTTCAATGACACGCAATGTAAGTCATAAATGAACGTCATAAAT
TTATGACACACAAATGCGCA
Found at i:6114208 original size:19 final size:17
Alignment explanation
Indices: 6114177--6114239 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 17
6114167 AATATGTTAA
6114177 TAATT-TTT-ATTTTTT
1 TAATTATTTAATTTTTT
*
6114192 GTAATTATTTAACTTTTTA
1 -TAATTATTTAA-TTTTTT
*
6114211 TAGTTATTTAATTATTTT
1 TAATTATTTAATT-TTTT
6114229 TAATTTATTTA
1 TAA-TTATTTA
6114240 TTATATTATT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
16 5 0.13
17 5 0.13
18 16 0.42
19 12 0.32
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.67
Consensus pattern (17 bp):
TAATTATTTAATTTTTT
Found at i:6121747 original size:6 final size:6
Alignment explanation
Indices: 6121726--6121759 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
6121716 AACCCTAGAG
* *
6121726 ATAAAC ATAGAA ATAAAA ATAAAA ATAAAA ATAA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAA
6121760 TCCTAAAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (6 bp):
ATAAAA
Found at i:6126295 original size:15 final size:15
Alignment explanation
Indices: 6126266--6126323 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
6126256 TTTTACAACT
*
6126266 AATTATTTAAAATATC
1 AATTATTT-AAATATA
6126282 AATTATTTAAATATA
1 AATTATTTAAATATA
* *
6126297 AATTATGTAAAAATA
1 AATTATTTAAATATA
6126312 AATTATTTAAAT
1 AATTATTTAAAT
6126324 GGATTGAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 29 0.78
16 8 0.22
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (15 bp):
AATTATTTAAATATA
Found at i:6126318 original size:30 final size:31
Alignment explanation
Indices: 6126266--6126323 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
6126256 TTTTACAACT
* *
6126266 AATTATTTAAAATATCAATTATTTAAATATA
1 AATTATGTAAAATATAAATTATTTAAATATA
6126297 AATTATGTAAAA-ATAAATTATTTAAAT
1 AATTATGTAAAATATAAATTATTTAAAT
6126324 GGATTGAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (31 bp):
AATTATGTAAAATATAAATTATTTAAATATA
Found at i:6126414 original size:19 final size:19
Alignment explanation
Indices: 6126390--6126426 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
6126380 TCAATCTATT
6126390 TAATTAAAACAATATAAAC
1 TAATTAAAACAATATAAAC
*
6126409 TAATTAAAATAATATAAA
1 TAATTAAAACAATATAAA
6126427 AATCATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (19 bp):
TAATTAAAACAATATAAAC
Found at i:6127987 original size:155 final size:156
Alignment explanation
Indices: 6127762--6128295 Score: 675
Period size: 158 Copynumber: 3.4 Consensus size: 156
6127752 ACATATTTTA
* *
6127762 TTATTTCTTCAATTCAT-TC-TTCATTTTAAGTCAATTTTTTACCAAA-TTAAACCACATGCTCC
1 TTATTTCTTCAATT--TGTCATTTATTTTAAGTCGA-TTTTTACCAAATTTAAACCACATGCTCC
*
6127824 TAAA-CATAGTAGAATATATGTGTACTTTCAATTCCTCTTTTTGATAACAAATTTTTATTTTTCA
63 TAAACCATAGTAGAATATATATGTACTTTCAATTCCTCTTTTTGATAACAAATTTTTATTTTTCA
*
6127888 ATTTAGTCATTGAATTTTTCATAATCTCC
128 ATTTAGTCATTCAATTTTTCATAATCTCC
* * * *
6127917 TTATTTCTTCAATTTGTTATTTATTTTAAGTC-ATTTTCACCAAATTTGAGCCACATGCTCCTAA
1 TTATTTCTTCAATTTGTCATTTATTTTAAGTCGATTTTTACCAAATTTAAACCACATGCTCCTAA
* * * *
6127981 ACCATAGTAGAATACATATGTACTTTTAATTCCTCTTTTTGATAACAATTTTTTTTTATTTTTTA
66 ACCATAGTAGAATATATATGTACTTTCAATTCCTCTTTTTGATAACAA---ATTTTTATTTTTCA
* * *
6128046 ATTTAGTCCTTCAATTTTTCAAAATCTCT
128 ATTTAGTCATTCAATTTTTCATAATCTCC
* * * * **
6128075 TTATTTCTTCAATTTGTCATTTATTTTATGTCTGTTTTTTTACCAAATTTGAGCCACATAATCCT
1 TTATTTCTTCAATTTGTCATTTATTTTAAGTC-G-ATTTTTACCAAATTTAAACCACATGCTCCT
* * *
6128140 ATACCATAATAGAATATATATTTGTACTTTCAATTCCTCTTTTTTATAAC-AATTTTTATTTTTC
64 AAACCATAGTAGAATATATA--TGTACTTTCAATTCCTCTTTTTGATAACAAATTTTTATTTTTC
*
6128204 AATTTAGTCATTTAATTTTTCATAATCTCC
127 AATTTAGTCATTCAATTTTTCATAATCTCC
** *
6128234 TTATTAATTCAATTTGTCATTTATTTTAAGTTCGTTTTTTACCAAATTTAAACCACATGCTC
1 TTATTTCTTCAATTTGTCATTTATTTTAAG-TCGATTTTTACCAAATTTAAACCACATGCTC
6128296 ATATTTCATA
Statistics
Matches: 328, Mismatches: 38, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
153 11 0.03
154 20 0.06
155 69 0.21
158 91 0.28
159 65 0.20
160 2 0.01
161 43 0.13
162 1 0.00
163 26 0.08
ACGTcount: A:0.29, C:0.16, G:0.06, T:0.49
Consensus pattern (156 bp):
TTATTTCTTCAATTTGTCATTTATTTTAAGTCGATTTTTACCAAATTTAAACCACATGCTCCTAA
ACCATAGTAGAATATATATGTACTTTCAATTCCTCTTTTTGATAACAAATTTTTATTTTTCAATT
TAGTCATTCAATTTTTCATAATCTCC
Found at i:6128563 original size:2 final size:2
Alignment explanation
Indices: 6128556--6128597 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
6128546 ATATGAAAGA
6128556 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6128598 GGTTAGATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6135829 original size:24 final size:24
Alignment explanation
Indices: 6135797--6135844 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
6135787 AATAAGTTAT
6135797 ATTAAAAATTTTA-AGGATACAAA
1 ATTAAAAATTTTAGAGGATACAAA
6135820 ATTATAAAATTTTAGAGGATACAAA
1 ATTA-AAAATTTTAGAGGATACAAA
6135845 GATAGATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 4 0.17
24 9 0.39
25 10 0.43
ACGTcount: A:0.54, C:0.04, G:0.10, T:0.31
Consensus pattern (24 bp):
ATTAAAAATTTTAGAGGATACAAA
Found at i:6138102 original size:16 final size:14
Alignment explanation
Indices: 6138081--6138114 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
6138071 ATTCAAATAC
6138081 AAATTCACTACTTATA
1 AAATTCACTA-TTA-A
6138097 AAATTCACTATTAA
1 AAATTCACTATTAA
6138111 AAAT
1 AAAT
6138115 GTGACATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 3 0.17
16 10 0.56
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (14 bp):
AAATTCACTATTAA
Found at i:6140189 original size:2 final size:2
Alignment explanation
Indices: 6140184--6140234 Score: 88
Period size: 2 Copynumber: 26.5 Consensus size: 2
6140174 AAGAATATGA
6140184 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6140226 A- AT -T AT AT A
1 AT AT AT AT AT A
6140235 ATTTAAATTA
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
1 2 0.04
2 45 0.96
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:6140415 original size:18 final size:18
Alignment explanation
Indices: 6140389--6140433 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
6140379 TCACGGAATG
*
6140389 TAAGATTACCGGCGGGAA
1 TAAGATTACCGACGGGAA
*
6140407 TAGGATTACCGACGGGAA
1 TAAGATTACCGACGGGAA
6140425 TAAGATTAC
1 TAAGATTAC
6140434 TGGGAATGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.36, C:0.16, G:0.29, T:0.20
Consensus pattern (18 bp):
TAAGATTACCGACGGGAA
Found at i:6144524 original size:16 final size:16
Alignment explanation
Indices: 6144503--6144543 Score: 82
Period size: 16 Copynumber: 2.6 Consensus size: 16
6144493 CAATGAGCAT
6144503 CGAGCTTAACGAGTAA
1 CGAGCTTAACGAGTAA
6144519 CGAGCTTAACGAGTAA
1 CGAGCTTAACGAGTAA
6144535 CGAGCTTAA
1 CGAGCTTAA
6144544 TGAGCAGCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.20
Consensus pattern (16 bp):
CGAGCTTAACGAGTAA
Found at i:6144528 original size:9 final size:9
Alignment explanation
Indices: 6144503--6144548 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
6144493 CAATGAGCAT
6144503 CGAGCTTAA
1 CGAGCTTAA
6144512 CGAG--TAA
1 CGAGCTTAA
6144519 CGAGCTTAA
1 CGAGCTTAA
6144528 CGAG--TAA
1 CGAGCTTAA
6144535 CGAGCTTAA
1 CGAGCTTAA
*
6144544 TGAGC
1 CGAGC
6144549 AGCTAGCATA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
7 14 0.44
9 18 0.56
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20
Consensus pattern (9 bp):
CGAGCTTAA
Found at i:6163148 original size:58 final size:58
Alignment explanation
Indices: 6163055--6163179 Score: 148
Period size: 58 Copynumber: 2.2 Consensus size: 58
6163045 AAGGAAATAT
* * *
6163055 AGAAATAAAGCGTCAAATTTATTTTCTTATGAATCTT-ATATGATTAT-ATTTGGTAAAA
1 AGAAATAAAACGTCAAATTTATTTTCTTAGGAATCTTGA-ACGATT-TCATTTGGTAAAA
* * *
6163113 GGAAATAAAATGTCAAATTTATTTTCTT-GGAAATCTTGAACGATTTCATTTTGTAAAA
1 AGAAATAAAACGTCAAATTTATTTTCTTAGG-AATCTTGAACGATTTCATTTGGTAAAA
6163171 AGAAATAAA
1 AGAAATAAA
6163180 TCATTGAATT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
57 2 0.04
58 54 0.95
59 1 0.02
ACGTcount: A:0.42, C:0.07, G:0.13, T:0.38
Consensus pattern (58 bp):
AGAAATAAAACGTCAAATTTATTTTCTTAGGAATCTTGAACGATTTCATTTGGTAAAA
Found at i:6170464 original size:16 final size:16
Alignment explanation
Indices: 6170443--6170478 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
6170433 GCACACAAGG
6170443 CATGCGAACTAGATAT
1 CATGCGAACTAGATAT
6170459 CATGCGAACTAGATAT
1 CATGCGAACTAGATAT
6170475 CATG
1 CATG
6170479 TGGTTAGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (16 bp):
CATGCGAACTAGATAT
Found at i:6170523 original size:45 final size:47
Alignment explanation
Indices: 6170459--6170549 Score: 150
Period size: 45 Copynumber: 2.0 Consensus size: 47
6170449 AACTAGATAT
*
6170459 CATGCGAACTAGATATCATGTGGTTAGG-TTTATTTTT-TGAATAAG
1 CATGCGAACTAGATATCATGCGGTTAGGATTTATTTTTGTGAATAAG
*
6170504 CATGCGAATTAGATATCATGCGGTTAGGATTTATTTTTGTGAATAA
1 CATGCGAACTAGATATCATGCGGTTAGGATTTATTTTTGTGAATAA
6170550 CAAAGCATGG
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
45 26 0.62
46 9 0.21
47 7 0.17
ACGTcount: A:0.30, C:0.09, G:0.22, T:0.40
Consensus pattern (47 bp):
CATGCGAACTAGATATCATGCGGTTAGGATTTATTTTTGTGAATAAG
Found at i:6180198 original size:17 final size:18
Alignment explanation
Indices: 6180176--6180251 Score: 84
Period size: 17 Copynumber: 4.1 Consensus size: 18
6180166 TTGAAGGAGA
*
6180176 AATAAAAAAGGAAAAAT-
1 AATAAAAAATGAAAAATG
6180193 AATAAAAAAATGAAAAATG
1 AAT-AAAAAATGAAAAATG
6180212 AA-AAAAAATGAAAAATG
1 AATAAAAAATGAAAAATG
*
6180229 AAAAATGAAAAATGAAAAATG
1 ---AATAAAAAATGAAAAATG
6180250 AA
1 AA
6180252 AAATGAAAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
17 18 0.35
18 15 0.29
19 2 0.04
20 2 0.04
21 14 0.27
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.13
Consensus pattern (18 bp):
AATAAAAAATGAAAAATG
Found at i:6180208 original size:7 final size:7
Alignment explanation
Indices: 6180198--6180276 Score: 113
Period size: 7 Copynumber: 10.7 Consensus size: 7
6180188 AAAATAATAA
6180198 AAAAATG
1 AAAAATG
6180205 AAAAATG
1 AAAAATG
6180212 AAAAAAAATG
1 ---AAAAATG
6180222 AAAAATG
1 AAAAATG
6180229 AAAAATG
1 AAAAATG
6180236 AAAAATG
1 AAAAATG
6180243 AAAAATG
1 AAAAATG
6180250 AAAAATG
1 AAAAATG
6180257 AAAAATG
1 AAAAATG
*
6180264 AAAGAAAG
1 AAA-AATG
6180272 AAAAA
1 AAAAA
6180277 AAAAGAAATA
Statistics
Matches: 67, Mismatches: 1, Indels: 8
0.88 0.01 0.11
Matches are distributed among these distances:
7 54 0.81
8 6 0.09
10 7 0.10
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (7 bp):
AAAAATG
Found at i:6180378 original size:45 final size:45
Alignment explanation
Indices: 6180293--6180378 Score: 104
Period size: 45 Copynumber: 1.9 Consensus size: 45
6180283 AATAGAAATA
* *
6180293 AAAGGAGGGTTCAAGATTAAAACCCGAAAAGGGCGTCTTGAAACC
1 AAAGGAGGGTTCAAGATTAAAACCCGAAAAGAGCGACTTGAAACC
* *
6180338 AAAGGA-GGTCTCAAG-TTGAAAACCTGCAAAGAGCGACTTGA
1 AAAGGAGGGT-TCAAGATT-AAAACCCGAAAAGAGCGACTTGA
6180379 GTTGAGTTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
44 5 0.14
45 30 0.86
ACGTcount: A:0.40, C:0.17, G:0.27, T:0.16
Consensus pattern (45 bp):
AAAGGAGGGTTCAAGATTAAAACCCGAAAAGAGCGACTTGAAACC
Found at i:6181692 original size:55 final size:55
Alignment explanation
Indices: 6181633--6181958 Score: 460
Period size: 55 Copynumber: 5.9 Consensus size: 55
6181623 GAAGCAAATA
* * *
6181633 CGTTTGATGAAGATTGTTCGAGTTCTATACTCCCTGAATGAATTGGGAGCGGACC
1 CGTTTTATGAAGATTGTTCGAGTTCTATACTCCCTGAAGGAATAGGGAGCGGACC
* * *
6181688 CGTTTTTATGAAGATTGTTCGAGTTCTATACTCTCTGATGGAATAGGGAGCGGAAC
1 CG-TTTTATGAAGATTGTTCGAGTTCTATACTCCCTGAAGGAATAGGGAGCGGACC
* *
6181744 CGTTTTATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACC
1 CGTTTTATGAAGATTGTTCGAGTTCTATACTCCCTGAAGGAATAGGGAGCGGACC
* * * * *
6181799 TGTTTTATTAAGATTGTTCGAGTTCTATACTCTCTAAAGGAATAGAGAGCGGACC
1 CGTTTTATGAAGATTGTTCGAGTTCTATACTCCCTGAAGGAATAGGGAGCGGACC
6181854 CGTTTTATGAAGATTGTTCGAGTTCTATACTCCCTGAACGG-ATAGGGAGCGGACC
1 CGTTTTATGAAGATTGTTCGAGTTCTATACTCCCTGAA-GGAATAGGGAGCGGACC
* *
6181909 C-ATTTATTGAAGATTGATCGAG-TCTTATACTCCCTGAAGGAATAGGGAGC
1 CGTTTTA-TGAAGATTGTTCGAGTTC-TATACTCCCTGAAGGAATAGGGAGC
6181959 AGACTTATCA
Statistics
Matches: 247, Mismatches: 19, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
54 8 0.03
55 188 0.76
56 51 0.21
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (55 bp):
CGTTTTATGAAGATTGTTCGAGTTCTATACTCCCTGAAGGAATAGGGAGCGGACC
Found at i:6186366 original size:15 final size:15
Alignment explanation
Indices: 6186348--6186379 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6186338 ATTAAAAATA
6186348 AATTAAAAGAAAACG
1 AATTAAAAGAAAACG
*
6186363 AATTAAACGAAAACG
1 AATTAAAAGAAAACG
6186378 AA
1 AA
6186380 ATGTGCCTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.09, G:0.12, T:0.12
Consensus pattern (15 bp):
AATTAAAAGAAAACG
Found at i:6196748 original size:30 final size:30
Alignment explanation
Indices: 6196678--6196749 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
6196668 ACTCTAGAGA
* *
6196678 AGTGTAGAA-CTCTCTAGAAGCTTGTGGAAG
1 AGTGTAGAATCTCTCTAGAAGATTCTGG-AG
* *
6196708 AGTGTGGAATC-CTCTAGAATATTCTGGAG
1 AGTGTAGAATCTCTCTAGAAGATTCTGGAG
6196737 ATGTGTAGAATCT
1 A-GTGTAGAATCT
6196750 TGTGGAAGAG
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
29 3 0.09
30 30 0.88
31 1 0.03
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.31
Consensus pattern (30 bp):
AGTGTAGAATCTCTCTAGAAGATTCTGGAG
Found at i:6196755 original size:20 final size:20
Alignment explanation
Indices: 6196722--6196775 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 20
6196712 TGGAATCCTC
*
6196722 TAGAATATTCTGG-AGATGTG
1 TAGAATCTTCTGGAAGA-GTG
*
6196742 TAGAATCTTGTGGAAGAGTG
1 TAGAATCTTCTGGAAGAGTG
* *
6196762 TGGAATCCTCTGGA
1 TAGAATCTTCTGGA
6196776 TGATTTTGGA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 25 0.89
21 3 0.11
ACGTcount: A:0.28, C:0.09, G:0.31, T:0.31
Consensus pattern (20 bp):
TAGAATCTTCTGGAAGAGTG
Found at i:6196786 original size:50 final size:50
Alignment explanation
Indices: 6196692--6196816 Score: 171
Period size: 50 Copynumber: 2.5 Consensus size: 50
6196682 TAGAACTCTC
*
6196692 TAGAAGCTTGTGGAAGAGTGTGGAATCCTCTAGAATATTCTGGAGATGTG
1 TAGAACCTTGTGGAAGAGTGTGGAATCCTCTAGAATATTCTGGAGATGTG
* * *
6196742 TAGAATCTTGTGGAAGAGTGTGGAATCCTCT-GGATGATTTTGGAGATGTG
1 TAGAACCTTGTGGAAGAGTGTGGAATCCTCTAGAAT-ATTCTGGAGATGTG
* * *
6196792 TGGAACCTTATGGAAGAGTATGGAA
1 TAGAACCTTGTGGAAGAGTGTGGAA
6196817 GAATATGGAA
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
49 3 0.04
50 64 0.96
ACGTcount: A:0.28, C:0.09, G:0.33, T:0.30
Consensus pattern (50 bp):
TAGAACCTTGTGGAAGAGTGTGGAATCCTCTAGAATATTCTGGAGATGTG
Found at i:6208417 original size:3 final size:3
Alignment explanation
Indices: 6208411--6208505 Score: 142
Period size: 3 Copynumber: 31.7 Consensus size: 3
6208401 TTCATTTAAA
6208411 TAT TAT T-T ATAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6208456 TAT TAT TAT TA- TAT TAT TAT ATAT TAT TA- TAT GTAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT -TAT TAT TAT TAT
6208501 TAT TA
1 TAT TA
6208506 AAAAATTTAC
Statistics
Matches: 86, Mismatches: 0, Indels: 12
0.88 0.00 0.12
Matches are distributed among these distances:
2 5 0.06
3 74 0.86
4 7 0.08
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:6210163 original size:23 final size:26
Alignment explanation
Indices: 6210131--6210180 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 26
6210121 CATTTTCTGA
*
6210131 TATTTCTAAATA-A-ATAAA-TATTT
1 TATTTATAAATATATATAAATTATTT
6210154 TATTTATAAATATATATAAATTATTT
1 TATTTATAAATATATATAAATTATTT
6210180 T
1 T
6210181 TTTCTCTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 11 0.48
24 1 0.04
25 5 0.22
26 6 0.26
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (26 bp):
TATTTATAAATATATATAAATTATTT
Found at i:6210731 original size:22 final size:22
Alignment explanation
Indices: 6210686--6210732 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
6210676 TTTCAAATTT
*
6210686 TTTATATATATTTATTATTTTA
1 TTTATATATATTTATTATTATA
*
6210708 TTTATATAT-TTTCTTATTAATA
1 TTTATATATATTTATTATT-ATA
6210730 TTT
1 TTT
6210733 CATTTTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 8 0.36
22 14 0.64
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (22 bp):
TTTATATATATTTATTATTATA
Found at i:6211048 original size:9 final size:9
Alignment explanation
Indices: 6211034--6211058 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
6211024 TGCATATAAT
6211034 AAACCCTAG
1 AAACCCTAG
6211043 AAACCCTAG
1 AAACCCTAG
6211052 AAACCCT
1 AAACCCT
6211059 TCCGATCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.36, G:0.08, T:0.12
Consensus pattern (9 bp):
AAACCCTAG
Found at i:6213972 original size:15 final size:15
Alignment explanation
Indices: 6213954--6213985 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6213944 GATCAATACC
6213954 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
6213969 TTTTGCATACATTCA
1 TTTTGCATACATGCA
6213984 TT
1 TT
6213986 ATTCATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:6221340 original size:16 final size:16
Alignment explanation
Indices: 6221315--6221353 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
6221305 CTTGAAGAAA
*
6221315 AAGAAA-AAAAAAGAG
1 AAGAAAGAAAAAAAAG
6221330 AAGAAAGAAAAAAAAG
1 AAGAAAGAAAAAAAAG
*
6221346 AAAAAAGA
1 AAGAAAGA
6221354 GGGGACAAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (16 bp):
AAGAAAGAAAAAAAAG
Found at i:6221340 original size:18 final size:18
Alignment explanation
Indices: 6221310--6221353 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
6221300 TTATGCTTGA
6221310 AGAAAAAGAAAAAAAAAG
1 AGAAAAAGAAAAAAAAAG
6221328 AGAAGAAAG-AAAAAAAAG
1 AGAA-AAAGAAAAAAAAAG
6221346 A-AAAAAGA
1 AGAAAAAGA
6221354 GGGGACAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 4 0.17
17 2 0.08
18 14 0.58
19 4 0.17
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (18 bp):
AGAAAAAGAAAAAAAAAG
Found at i:6221351 original size:9 final size:9
Alignment explanation
Indices: 6221312--6221351 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
6221302 ATGCTTGAAG
6221312 AAAAAGAAAA
1 AAAAAG-AAA
*
6221322 AAAAAGAGA
1 AAAAAGAAA
*
6221331 AGAAAGAAA
1 AAAAAGAAA
6221340 AAAAAGAAA
1 AAAAAGAAA
6221349 AAA
1 AAA
6221352 GAGGGGACAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
9 20 0.77
10 6 0.23
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (9 bp):
AAAAAGAAA
Found at i:6222502 original size:94 final size:94
Alignment explanation
Indices: 6222339--6222629 Score: 466
Period size: 94 Copynumber: 3.1 Consensus size: 94
6222329 ACAAGTGCCG
6222339 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCGA
1 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCGA
6222404 AAAACCAATCATTGAATTTGAAAAATGAA
66 AAAACCAATCATTGAATTTGAAAAATGAA
*
6222433 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCGG
1 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCGA
* *
6222498 AAAACCAATCATTGGATTTGAAATAAAGAAA
66 AAAACCAATCATTGAATTTGAAA-AATG-AA
* *
6222529 T-T-C-AATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCAC-A
1 TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCGA
*
6222590 AAAACCAATCATT-AGATTTGAAAGATGAA
66 AAAACCAATCATTGA-ATTTGAAAAATGAA
6222619 TGTGCTCATAG
1 TGTGCTCATAG
6222630 TAGAAATAAG
Statistics
Matches: 181, Mismatches: 10, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
90 3 0.02
91 3 0.02
92 22 0.12
93 59 0.33
94 87 0.48
95 4 0.02
96 3 0.02
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (94 bp):
TGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCGA
AAAACCAATCATTGAATTTGAAAAATGAA
Found at i:6223773 original size:116 final size:114
Alignment explanation
Indices: 6223418--6223986 Score: 682
Period size: 116 Copynumber: 5.0 Consensus size: 114
6223408 TAGCAAAGAT
* * * * * *
6223418 TCAAATCCATCAATTGATGGATCAGCATTACCAGATAGAGTTCATAAGGAGAAGAACTCATCATC
1 TCAAATTCATCACTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACT--TCATC
*
6223483 TGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGT
64 TGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* * * * * * * *
6223534 TTAAATTCATTATTTGATGGATTAACATTGCCAGA-AAGAGTTCATAATAAGAAGAACTT-AGCT
1 TCAAATTCATCACTTGATGGATCAGCATTTCCAGAGAA-AGTTCATAATGAGAAGAACTTCATCT
* * * * *
6223597 AAAGAA-AAAGAAAAAATTCATAATGAGAAGAATTTGTTCAACTTTTTGC
65 GAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
** * * *
6223646 TTGAATTCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCATT
1 TCAAATTCATCACTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACT--TCATC
*
6223711 TGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGC
64 TGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* * ****
6223762 TCAAATCCATCACTTGATGGATCAGCTTTTCCAGTTCGAGTTCATAATGAGAAGAA-TTCATCTG
1 TCAAATTCATCACTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTTCATCTG
* * *
6223826 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTTAACCTTTTGT
66 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
* * *
6223875 TCAAATTCATCACTTGATGGATCAACATTTCCATAGAAAGTTCATAATAAGAAGAACTT-ATCTG
1 TCAAATTCATCACTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTTCATCTG
* **
6223939 AAG-AGGAAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACCTTTTGC
66 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
6223987 ATAATTCTAT
Statistics
Matches: 390, Mismatches: 56, Indels: 18
0.84 0.12 0.04
Matches are distributed among these distances:
112 127 0.33
113 116 0.30
114 4 0.01
115 9 0.02
116 134 0.34
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (114 bp):
TCAAATTCATCACTTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTTCATCTG
AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
Found at i:6223854 original size:24 final size:23
Alignment explanation
Indices: 6223811--6223855 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
6223801 GTTCATAATG
*
6223811 AGAAGAATTCATCTGAAGAAGGA
1 AGAAGAATTCATATGAAGAAGGA
6223834 AGAAGAAGTTCATAATG-AGAAG
1 AGAAGAA-TTCAT-ATGAAGAAG
6223856 AACTTGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 7 0.37
24 10 0.53
25 2 0.11
ACGTcount: A:0.49, C:0.07, G:0.27, T:0.18
Consensus pattern (23 bp):
AGAAGAATTCATATGAAGAAGGA
Found at i:6223953 original size:228 final size:227
Alignment explanation
Indices: 6223417--6223986 Score: 709
Period size: 228 Copynumber: 2.5 Consensus size: 227
6223407 TTAGCAAAGA
* * * * *
6223417 TTCAAATCCATCAATTGATGGATCAGCATTACCAGATAGAGTTCATAAGGAGAAGAACTCATCAT
1 TTCAAATTCATCAATTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACT-ATCAT
* * * * *
6223482 CTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATTAT
65 CTGAAG-AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCAC
*
6223547 TTGATGGATTAACATTGCCAGAAAGAGTTCATAATAAGAAGAACTTAGCTAAAGAAAAAGAAAAA
129 TTGATGGATCAACATTGCCAGAAAGAGTTCATAATAAGAAGAACTTAGCTAAAGAAAAAGAAAAA
* *
6223612 ATTCATAATGAGAAGAATTTGTTCAACTTTTTGC
194 ATTCATAATGAGAAGAACTTGTTCAACCTTTTGC
* * *
6223646 TT-GAATTCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCAT
1 TTCAAATTCATCAATTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACT-ATCAT
* *
6223710 TTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCAC
65 CTGAAG-AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCAC
* * * *** * * * * *
6223775 TTGATGGATCAGCTTTTCCAGTTCGAGTTCATAATGAGAAGAA-TTCATCTGAAGAAGGAAGAAG
129 TTGATGGATCAACATTGCCAGAAAGAGTTCATAATAAGAAGAACTT-AGCTAAAGAA-AAAGAAA
* *
6223839 AAGTTCATAATGAGAAGAACTTGTTTAACCTTTTG-
192 AAATTCATAATGAGAAGAACTTGTTCAACCTTTTGC
* * * *
6223874 TTCAAATTCATCACTTGATGGATCAACATTTCCATAGAAAGTTCATAATAAGAAGAACT-T-ATC
1 TTCAAATTCATCAATTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTATCATC
* **
6223937 TGAAGAGGAAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACCTTTTGC
66 TGAAGAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGC
6223987 ATAATTCTAT
Statistics
Matches: 296, Mismatches: 42, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
225 41 0.14
226 7 0.02
227 3 0.01
228 157 0.53
229 88 0.30
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.30
Consensus pattern (227 bp):
TTCAAATTCATCAATTGATGGATCAGCATTTCCAGAGAAAGTTCATAATGAGAAGAACTATCATC
TGAAGAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTT
GATGGATCAACATTGCCAGAAAGAGTTCATAATAAGAAGAACTTAGCTAAAGAAAAAGAAAAAAT
TCATAATGAGAAGAACTTGTTCAACCTTTTGC
Found at i:6224042 original size:123 final size:123
Alignment explanation
Indices: 6223895--6224128 Score: 303
Period size: 123 Copynumber: 1.9 Consensus size: 123
6223885 CACTTGATGG
* * * *
6223895 ATCAACATTTCCATAGAAAGTTCATAATAAGAAGAACTTATCTGAAGAGGAAGAAGAAGT-TC-A
1 ATCAACATTTCCAGAAAAAGTTCATAATAAGAAGAACTCATCTG-A-A-GAAGAAGAACTATCTA
* * * * *
6223958 CA-ATGAGAAGAGCTTGTTCAACCTTTTGCATAATTCTATCACAGAAGCAGATAGAGTAGC
63 AAGAGGAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGCAGATAGAGTAGC
* *
6224018 ATCAACCTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAACTCATCTAAA
1 ATCAACATTTCCAGAAAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAGAACT-ATCTAAA
*
6224083 GAGGAGAAGAGCTTATTCAATCTTTTGAATAACTCTATCACAGAAG
65 GAGGAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAG
6224129 GAAATAGGTC
Statistics
Matches: 95, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
120 10 0.11
121 1 0.01
122 3 0.03
123 41 0.43
124 40 0.42
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (123 bp):
ATCAACATTTCCAGAAAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGAAGAACTATCTAAAG
AGGAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGCAGATAGAGTAGC
Found at i:6224067 original size:229 final size:222
Alignment explanation
Indices: 6223420--6224070 Score: 549
Period size: 228 Copynumber: 2.8 Consensus size: 222
6223410 GCAAAGATTC
* * * * * * **
6223420 AAATCCATCAATTGATGGATCAGCATTACCAGATAGAGTTCATAAGGAGAAGAACTCATCATCTG
1 AAATTCATCACTTGATGGATCAACATTTCCAGAGAAAGTTCATAATAAGAAGAACT-ATCATCTG
* * * * * * ** * *
6223485 AAGAAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAATTCATTATTTG
65 AAGAAGGAAGAAGAAATTCACAATGAGAAGAACTTGTTCAACCTTTTGCTCAAATCCAGCAATAG
* * * * * * * * * *
6223550 ATGGATTAACATTGCCAGAAAGAGTTCATAATAAGAAGAACTTAGCTAAAGAAAAAGAAAAAATT
130 ATGCATCAACCTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCT--AG---AAGAAGAAGTT
* *
6223615 CATAATGAGAAGAATTTGTTCAACTTTTTGCTT
190 CATAATGAGAAGAACTTGTTCAACCTTTTGCTT
* * * * * *
6223648 GAATTCATCATTTGATGGATCAGCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCATTTG
1 AAATTCATCACTTGATGGATCAACATTTCCAGAGAAAGTTCATAATAAGAAGAACT-ATCATCTG
* * * * *
6223713 AAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTGCTCAAATCCATCACTTG
65 AAGAAGGAAGAAGAAATTCACAATGAGAAGAACTTGTTCAACCTTTTGCTCAAATCCAGCAATAG
* * * **** *
6223778 ATGGATCAGCTTTTCCAGTTCGAGTTCATAATGAGAAGAATTCATCTGAAGAAGGAAGAAGAAGT
130 ATGCATCAACCTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCT-----A-GAAGAAGAAGT
*
6223843 TCATAATGAGAAGAACTTGTTTAACCTTTTG-TT
189 TCATAATGAGAAGAACTTGTTCAACCTTTTGCTT
*
6223876 CAAATTCATCACTTGATGGATCAACATTTCCATAGAAAGTTCATAATAAGAAGAACT-T-ATCTG
1 -AAATTCATCACTTGATGGATCAACATTTCCAGAGAAAGTTCATAATAAGAAGAACTATCATCTG
* *
6223939 AAG-AGGAAGAAGAAGTTCACAATGAGAAGAGCTTGTTCAACCTTTTGCAT-AATTCTATCACAG
65 AAGAAGGAAGAAGAAATTCACAATGAGAAGAACTTGTTCAACCTTTTGC-TCAA----ATC-C--
6224002 AAGCAGATAGAGTAGCATCAACCTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCT-GAAGA
122 -AGCA-ATAGA-T-GCATCAACCTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTAGAAGA
6224066 AGAAG
183 AGAAG
6224071 AACTCATCTA
Statistics
Matches: 352, Mismatches: 54, Indels: 33
0.80 0.12 0.08
Matches are distributed among these distances:
225 43 0.12
226 8 0.02
227 1 0.00
228 153 0.43
229 99 0.28
230 1 0.00
231 2 0.01
232 1 0.00
233 3 0.01
234 3 0.01
235 1 0.00
236 37 0.11
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.28
Consensus pattern (222 bp):
AAATTCATCACTTGATGGATCAACATTTCCAGAGAAAGTTCATAATAAGAAGAACTATCATCTGA
AGAAGGAAGAAGAAATTCACAATGAGAAGAACTTGTTCAACCTTTTGCTCAAATCCAGCAATAGA
TGCATCAACCTTTCCAGAAAAAGTTCATAATGAGAAGAACTCATCTAGAAGAAGAAGTTCATAAT
GAGAAGAACTTGTTCAACCTTTTGCTT
Found at i:6224071 original size:19 final size:19
Alignment explanation
Indices: 6224047--6224084 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
6224037 GTTCATAATG
*
6224047 AGAAGAACTCATCTGAAGA
1 AGAAGAACTCATCTAAAGA
6224066 AGAAGAACTCATCTAAAGA
1 AGAAGAACTCATCTAAAGA
6224085 GGAGAAGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.16, G:0.18, T:0.16
Consensus pattern (19 bp):
AGAAGAACTCATCTAAAGA
Found at i:6224159 original size:124 final size:120
Alignment explanation
Indices: 6223911--6224178 Score: 276
Period size: 124 Copynumber: 2.2 Consensus size: 120
6223901 ATTTCCATAG
* * * * * *
6223911 AAAGTTCATAATAAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCACAATGAGAAGAGCTTGTT
1 AAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAACTTCAAAAGGAGAAGAGCTTATT
* * * *
6223976 CAACCTTTTGCATAATTCTATCACAGAAGCAGATAGAGTAGCATCAACCTTTCCAGAA
66 CAACCTTTTGAATAACTCTATCACAGAAGCAAATAGAGTAACATCAACC--TCCAG-A
6224034 AAAGTTCATAATGAGAAGAACTCATCTG-A-A-GAAGAAGAACTCATCTAAAGAGGAGAAGAGCT
1 AAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAACT--TC-AAA-AGGAGAAGAGCT
* * *
6224096 TATTCAATCTTTTGAATAACTCTATCACAGAAGGAAATAG-GTCAACATCATCC-CCAGTGGA
62 TATTCAACCTTTTGAATAACTCTATCACAGAAGCAAATAGAGT-AACATCAACCTCCA---GA
*
6224157 AAAGTTCATAATGAGAATAACT
1 AAAGTTCATAATGAGAAGAACT
6224179 AATCCCAAAG
Statistics
Matches: 123, Mismatches: 14, Indels: 16
0.80 0.09 0.10
Matches are distributed among these distances:
120 10 0.08
121 4 0.03
122 3 0.02
123 52 0.42
124 54 0.44
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.24
Consensus pattern (120 bp):
AAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAACTTCAAAAGGAGAAGAGCTTATT
CAACCTTTTGAATAACTCTATCACAGAAGCAAATAGAGTAACATCAACCTCCAGA
Found at i:6224164 original size:123 final size:121
Alignment explanation
Indices: 6223911--6224178 Score: 285
Period size: 123 Copynumber: 2.2 Consensus size: 121
6223901 ATTTCCATAG
* * * * * *
6223911 AAAGTTCATAATAAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCACAATGAGAAGAGCTTGTT
1 AAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAACTTCAAAAGGAGAAGAGCTTATT
* * * *
6223976 CAACCTTTTGCATAATTCTATCACAGAAGCAGATAGAGTAGCATCAACCTTTCCAGAA
66 CAACCTTTTGAATAACTCTATCACAGAAGCAAATAGAGTAACATCAACC--TCCAGAA
6224034 AAAGTTCATAATGAGAAGAACTCATCTG-A-A-GAAGAAGAACTCATCTAAAGAGGAGAAGAGCT
1 AAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAACT--TC-AAA-AGGAGAAGAGCT
* * * *
6224096 TATTCAATCTTTTGAATAACTCTATCACAGAAGGAAATAG-GTCAACATCATCC-CCAGTGGA
62 TATTCAACCTTTTGAATAACTCTATCACAGAAGCAAATAGAGT-AACATCAACCTCCA--GAA
*
6224157 AAAGTTCATAATGAGAATAACT
1 AAAGTTCATAATGAGAAGAACT
6224179 AATCCCAAAG
Statistics
Matches: 123, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
120 10 0.08
121 4 0.03
122 3 0.02
123 53 0.43
124 53 0.43
ACGTcount: A:0.42, C:0.16, G:0.18, T:0.24
Consensus pattern (121 bp):
AAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAACTTCAAAAGGAGAAGAGCTTATT
CAACCTTTTGAATAACTCTATCACAGAAGCAAATAGAGTAACATCAACCTCCAGAA
Done.