Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007984.1 Hibiscus syriacus cultivar Beakdansim tig00110429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12923621
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 34 of 65
Found at i:6898003 original size:48 final size:47
Alignment explanation
Indices: 6897881--6898070 Score: 328
Period size: 47 Copynumber: 4.0 Consensus size: 47
6897871 TAAAATCTCA
6897881 TTTGAAAACATCATGCACTGAAGGTCTTATGGATGACCCGAAGGCTT
1 TTTGAAAACATCATGCACTGAAGGTCTTATGGATGACCCGAAGGCTT
* * *
6897928 TTTGAAAACATCCTTCACTGAAGGTCTTATGGATGACCCGAAGGGTT
1 TTTGAAAACATCATGCACTGAAGGTCTTATGGATGACCCGAAGGCTT
*
6897975 TTTGAAAAACATCCTGCACTGAAGGTCTTATGGATGACCCGAAGGCTT
1 TTTG-AAAACATCATGCACTGAAGGTCTTATGGATGACCCGAAGGCTT
6898023 TTTGAAAACATCATGCACTGAAGGTCTTATGGATGACCCGAAGG-TT
1 TTTGAAAACATCATGCACTGAAGGTCTTATGGATGACCCGAAGGCTT
6898069 TT
1 TT
6898071 ACAAATTACC
Statistics
Matches: 136, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
46 4 0.03
47 87 0.64
48 45 0.33
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (47 bp):
TTTGAAAACATCATGCACTGAAGGTCTTATGGATGACCCGAAGGCTT
Found at i:6898502 original size:42 final size:42
Alignment explanation
Indices: 6898451--6898532 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
6898441 AAGGACTTAT
* * *
6898451 CATCTTGCTCGAAAGACTGACAGATGACCCGAAGGTTTTAAG
1 CATCATGCTCGAAAGACTAACAGATGACCCGAAGGATTTAAG
*
6898493 CATCATGCTCGAAAGACTAACAGATGACCTGAAGGATTTA
1 CATCATGCTCGAAAGACTAACAGATGACCCGAAGGATTTA
6898533 CAAATTTGTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (42 bp):
CATCATGCTCGAAAGACTAACAGATGACCCGAAGGATTTAAG
Found at i:6898529 original size:249 final size:249
Alignment explanation
Indices: 6898092--6899347 Score: 2093
Period size: 249 Copynumber: 5.0 Consensus size: 249
6898082 GGAGGTTTTA
** * * *
6898092 ATTTTCTAGAACATTAAATGAGAAACTTTGGTAATCGTTTTCTCATTTTCATGCAAAAATCATAT
1 ATTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTATCTCATTTTCATGCGAAAATCATAT
6898157 GTGAACAT-CTACCCAAAGGCTTTACGGATGGCCCTAAGGACTTATCATCTTGCTCGAAAGACTG
66 GTGAACATCCTACCCAAAGGCTTTACGGATGGCCCTAAGGACTTATCATCTTGCTCGAAAGACTG
* * * *
6898221 ACAGATGGCTCGGAGGTTTTAAGCATCATGCTCGAAAGAGTAACAAATGACCCGAAGGATTTATA
131 ACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGACTAACAAATGACCCGAAGGATTTATA
6898286 AATTTGTGGGAAATACTTTACTAGGTAAGAAACTTCTTACTTTTCAAGAATTTG
196 AATTTGTGGGAAATACTTTACTAGGTAAGAAACTTCTTACTTTTCAAGAATTTG
* *
6898340 ATTTTCTAGAACATTAAATGAGAAACTTTAAAAATCGCTATCTCATTTTCATGCAAAAATCATAT
1 ATTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTATCTCATTTTCATGCGAAAATCATAT
*
6898405 GTGAACATCCTACCCAAAGACTTTACGGATGGCCCTAAGGACTTATCATCTTGCTCGAAAGACTG
66 GTGAACATCCTACCCAAAGGCTTTACGGATGGCCCTAAGGACTTATCATCTTGCTCGAAAGACTG
* * *
6898470 ACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGACTAACAGATGACCTGAAGGATTTACA
131 ACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGACTAACAAATGACCCGAAGGATTTATA
*
6898535 AATTTGTGGGAAATACTTTACTAGGTAAGAAACTTCTTACCTTTCAAGAATTTG
196 AATTTGTGGGAAATACTTTACTAGGTAAGAAACTTCTTACTTTTCAAGAATTTG
* *
6898589 ATTTTCTAGAACATTAAATTAAATGAGAAACTTTGAAAATCGTTTTCTCATTTTCATGCGAAAAT
1 ATTTTCTAGAAC-----ATTAAATGAGAAACTTTGAAAATCGCTATCTCATTTTCATGCGAAAAT
* *
6898654 CATATGTGAACATCCTACCCAAAGGCTTTACGGATGGCCCTAAGGAGTTATCATCCTGCTCGAAA
61 CATATGTGAACATCCTACCCAAAGGCTTTACGGATGGCCCTAAGGACTTATCATCTTGCTCGAAA
* * *
6898719 GACTGACAGATGACCCGAAGGTTTTAAGCATCGTGCTCAAAAGACTAACAGATGACCCGAAGGAT
126 GACTGACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGACTAACAAATGACCCGAAGGAT
6898784 TTATAAATTTGTGGGAAATACTTTACTAGGTAAGAAACTTCTTACTTTTCAAGAATTTG
191 TTATAAATTTGTGGGAAATACTTTACTAGGTAAGAAACTTCTTACTTTTCAAGAATTTG
*
6898843 ATTTTCTAGAACATTAAATGAGAAACTTTGAAAATCACTATCTCATTTTCATGCGAAAATCATAT
1 ATTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTATCTCATTTTCATGCGAAAATCATAT
* *
6898908 GTGAACATCCTACCCAAAAGCTTTACGGATGGCCCTAAGGACTTATCATCTTGCTCAAAAGACTG
66 GTGAACATCCTACCCAAAGGCTTTACGGATGGCCCTAAGGACTTATCATCTTGCTCGAAAGACTG
* * *
6898973 ACAGATGACCCGAAGGTTTTGAGCATCATGCTCGAAAGACTAACAAATAACCCGAAGGATTTACA
131 ACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGACTAACAAATGACCCGAAGGATTTATA
*
6899038 AATTTGTGGGAAATACTTTACTAGGTAAGAAACTTCTTACCTTTCAAGAATTTG
196 AATTTGTGGGAAATACTTTACTAGGTAAGAAACTTCTTACTTTTCAAGAATTTG
6899092 ATTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTATCTCATTTTCATGCGAAAATCATAT
1 ATTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTATCTCATTTTCATGCGAAAATCATAT
** * *
6899157 GTGAACATCCTATACAAAGGCTTTACGGATGGCCCTAAAGACTTATCATCTTGATCGAAAGACTG
66 GTGAACATCCTACCCAAAGGCTTTACGGATGGCCCTAAGGACTTATCATCTTGCTCGAAAGACTG
** *
6899222 ACAGATGACCCGAAGGTTTTAAGCATCGCGCTCGAAAGACTAACAAATGACCCGAAGGAGTTATA
131 ACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGACTAACAAATGACCCGAAGGATTTATA
* * *
6899287 AATTT-TGGTAAATACTTTACTGGGTAAGAAACTTCTTACTTTTCAAGAATTTC
196 AATTTGTGGGAAATACTTTACTAGGTAAGAAACTTCTTACTTTTCAAGAATTTG
6899340 ATTTTCTA
1 ATTTTCTA
6899348 AAAAAGATTA
Statistics
Matches: 945, Mismatches: 57, Indels: 12
0.93 0.06 0.01
Matches are distributed among these distances:
248 120 0.13
249 588 0.62
254 237 0.25
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (249 bp):
ATTTTCTAGAACATTAAATGAGAAACTTTGAAAATCGCTATCTCATTTTCATGCGAAAATCATAT
GTGAACATCCTACCCAAAGGCTTTACGGATGGCCCTAAGGACTTATCATCTTGCTCGAAAGACTG
ACAGATGACCCGAAGGTTTTAAGCATCATGCTCGAAAGACTAACAAATGACCCGAAGGATTTATA
AATTTGTGGGAAATACTTTACTAGGTAAGAAACTTCTTACTTTTCAAGAATTTG
Found at i:6898770 original size:42 final size:42
Alignment explanation
Indices: 6898705--6898786 Score: 128
Period size: 42 Copynumber: 2.0 Consensus size: 42
6898695 AAGGAGTTAT
* * *
6898705 CATCCTGCTCGAAAGACTGACAGATGACCCGAAGGTTTTAAG
1 CATCCTGCTCAAAAGACTAACAGATGACCCGAAGGATTTAAG
*
6898747 CATCGTGCTCAAAAGACTAACAGATGACCCGAAGGATTTA
1 CATCCTGCTCAAAAGACTAACAGATGACCCGAAGGATTTA
6898787 TAAATTTGTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.21
Consensus pattern (42 bp):
CATCCTGCTCAAAAGACTAACAGATGACCCGAAGGATTTAAG
Found at i:6900545 original size:51 final size:52
Alignment explanation
Indices: 6900476--6900588 Score: 165
Period size: 51 Copynumber: 2.2 Consensus size: 52
6900466 CTGGTGTGAG
* * **
6900476 CCTTCAAGATGCCTCACATAGATTACTTCTGTCTTTTTCATTCTGATATGAA
1 CCTTTAAGATACCTCACATAGATTACTTCTGTCTTTTTCATGATGATATGAA
* *
6900528 CCTTTAAGATACC-CACATAGATTACTTCTGTCTTTTTCATGATGATGTGAG
1 CCTTTAAGATACCTCACATAGATTACTTCTGTCTTTTTCATGATGATATGAA
6900579 CCTTTAAGAT
1 CCTTTAAGAT
6900589 GCCCCAGATA
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
51 44 0.80
52 11 0.20
ACGTcount: A:0.26, C:0.21, G:0.13, T:0.40
Consensus pattern (52 bp):
CCTTTAAGATACCTCACATAGATTACTTCTGTCTTTTTCATGATGATATGAA
Found at i:6902100 original size:10 final size:11
Alignment explanation
Indices: 6902079--6902115 Score: 53
Period size: 10 Copynumber: 3.6 Consensus size: 11
6902069 ATTCAATTTC
6902079 TTTTT-TTC-T
1 TTTTTCTTCTT
6902088 TTTTTCTT-TT
1 TTTTTCTTCTT
6902098 TTTTTCTTCTT
1 TTTTTCTTCTT
6902109 TTTTTCT
1 TTTTTCT
6902116 GATGTATGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 5 0.20
10 11 0.44
11 9 0.36
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (11 bp):
TTTTTCTTCTT
Found at i:6902107 original size:13 final size:13
Alignment explanation
Indices: 6902075--6902113 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
6902065 CTTGATTCAA
6902075 TTTCTT-TTTTTCT
1 TTTCTTCTTTTT-T
6902088 TTT-TTCTTTTTT
1 TTTCTTCTTTTTT
6902100 TTTCTTCTTTTTT
1 TTTCTTCTTTTTT
6902113 T
1 T
6902114 CTGATGTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.25
13 18 0.75
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (13 bp):
TTTCTTCTTTTTT
Found at i:6904508 original size:7 final size:7
Alignment explanation
Indices: 6904496--6904526 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
6904486 GCAAATGCAT
6904496 GATGTAA
1 GATGTAA
6904503 GATGTAA
1 GATGTAA
6904510 GATGTAA
1 GATGTAA
6904517 GATGTAA
1 GATGTAA
6904524 GAT
1 GAT
6904527 TAAAACTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (7 bp):
GATGTAA
Found at i:6906968 original size:60 final size:59
Alignment explanation
Indices: 6906891--6907007 Score: 198
Period size: 60 Copynumber: 2.0 Consensus size: 59
6906881 CGGTCATCCC
* *
6906891 CAAAAAACCCCAAATATGAAGTCTTAGGTTTACAAAGCCCTACCCTGACAAGGCCACCA
1 CAAAAAACCCCAAATATGAAGTCTTAAGTTTACAAAGCCCTACCCCGACAAGGCCACCA
*
6906950 CAAAGAAACCCCAAATATGAAGTCTTAAGTTTACGAAGCCCTACCCCGACAAGGCCAC
1 CAAA-AAACCCCAAATATGAAGTCTTAAGTTTACAAAGCCCTACCCCGACAAGGCCAC
6907008 GTACTCTCCT
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
59 4 0.07
60 50 0.93
ACGTcount: A:0.38, C:0.31, G:0.15, T:0.16
Consensus pattern (59 bp):
CAAAAAACCCCAAATATGAAGTCTTAAGTTTACAAAGCCCTACCCCGACAAGGCCACCA
Found at i:6912456 original size:16 final size:17
Alignment explanation
Indices: 6912425--6912458 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
6912415 AGGTTCTTTG
*
6912425 TTCTATTTTTTCTCCAT
1 TTCTATTTTGTCTCCAT
6912442 TTCTATTTTGT-TCCAT
1 TTCTATTTTGTCTCCAT
6912458 T
1 T
6912459 AGAAAAGCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.12, C:0.21, G:0.03, T:0.65
Consensus pattern (17 bp):
TTCTATTTTGTCTCCAT
Found at i:6918050 original size:15 final size:15
Alignment explanation
Indices: 6918032--6918060 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
6918022 CGAGTGCCTA
6918032 GGAAGAGAGTGAAGG
1 GGAAGAGAGTGAAGG
6918047 GGAAGAGAGTGAAG
1 GGAAGAGAGTGAAG
6918061 AGAAGAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.52, T:0.07
Consensus pattern (15 bp):
GGAAGAGAGTGAAGG
Found at i:6919376 original size:32 final size:32
Alignment explanation
Indices: 6919340--6919413 Score: 85
Period size: 32 Copynumber: 2.3 Consensus size: 32
6919330 TTTACGTATC
6919340 ATCTGAATGCGACACTAACATTACTGTACATT
1 ATCTGAATGCGACACTAACATTACTGTACATT
** * * * *
6919372 ATCTGAATATGACACTGATATTATTGTGCATT
1 ATCTGAATGCGACACTAACATTACTGTACATT
*
6919404 ATCTAAATGC
1 ATCTGAATGC
6919414 AACAAACTAT
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.35
Consensus pattern (32 bp):
ATCTGAATGCGACACTAACATTACTGTACATT
Found at i:6925697 original size:22 final size:22
Alignment explanation
Indices: 6925669--6925710 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
6925659 CATATTGTCC
6925669 AGAGGGTACCGATACCCCCACA
1 AGAGGGTACCGATACCCCCACA
6925691 AGAGGGTACCGATACCCCCA
1 AGAGGGTACCGATACCCCCA
6925711 TGTAAGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.31, C:0.36, G:0.24, T:0.10
Consensus pattern (22 bp):
AGAGGGTACCGATACCCCCACA
Found at i:6925783 original size:76 final size:76
Alignment explanation
Indices: 6925670--6925861 Score: 325
Period size: 76 Copynumber: 2.5 Consensus size: 76
6925660 ATATTGTCCA
6925670 GAGGGTACCGATACCCCCACAAGAGGGTACCGATACCCCCATGTAAGATTTGGCTCCAAGAAATA
1 GAGGGTACCGATACCCCC-CAAGAGGGTACCGATACCCCCATGTAAGATTTGGCTCCAAGAAATA
6925735 ACAGATTGCTCG
65 ACAGATTGCTCG
*
6925747 GAGGGTACCGATACCCCCCAAGAGGGTACCGTTACCCCCATGTAAGATTTGGCTCCAAGAAATAA
1 GAGGGTACCGATACCCCCCAAGAGGGTACCGATACCCCCATGTAAGATTTGGCTCCAAGAAATAA
6925812 CAGATTGCTCG
66 CAGATTGCTCG
* * *
6925823 GAGGGTATCAATA-CCCCCAGGA-GGTACCGATACCCCCAT
1 GAGGGTACCGATACCCCCCAAGAGGGTACCGATACCCCCAT
6925862 CTTAGAACTA
Statistics
Matches: 110, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
74 16 0.15
75 8 0.07
76 68 0.62
77 18 0.16
ACGTcount: A:0.30, C:0.29, G:0.23, T:0.18
Consensus pattern (76 bp):
GAGGGTACCGATACCCCCCAAGAGGGTACCGATACCCCCATGTAAGATTTGGCTCCAAGAAATAA
CAGATTGCTCG
Found at i:6927779 original size:21 final size:21
Alignment explanation
Indices: 6927753--6927793 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
6927743 AGACTTCATA
6927753 TTCAAAATACAAAAATGAAAT
1 TTCAAAATACAAAAATGAAAT
**
6927774 TTCAAAATTGAAAAATGAAA
1 TTCAAAATACAAAAATGAAA
6927794 ATAGTCTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.61, C:0.07, G:0.07, T:0.24
Consensus pattern (21 bp):
TTCAAAATACAAAAATGAAAT
Found at i:6931467 original size:22 final size:22
Alignment explanation
Indices: 6931408--6931468 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 22
6931398 TTAGTGTAGG
*
6931408 AGGTATCGATACCCCCTTGAAT
1 AGGTACCGATACCCCCTTGAAT
* * * *
6931430 GGGTACCAATCCCCCCTTTGAGT
1 AGGTACCGATACCCCC-TTGAAT
6931453 AGGTACCGATACCCCC
1 AGGTACCGATACCCCC
6931469 CCAGGAGGGT
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
22 12 0.40
23 18 0.60
ACGTcount: A:0.23, C:0.34, G:0.20, T:0.23
Consensus pattern (22 bp):
AGGTACCGATACCCCCTTGAAT
Found at i:6934275 original size:54 final size:55
Alignment explanation
Indices: 6934191--6934311 Score: 172
Period size: 54 Copynumber: 2.2 Consensus size: 55
6934181 TACCCCCACA
* * *
6934191 AGAGGGTATCGATACCCCCATGTAAGATTTGACTATGAGAAATAACAGATTGTTC
1 AGAGGGTACCGATACCCCCATGTAAGATTTGACTACGAGAAATAACAGATTGCTC
* * * *
6934246 GGAGGGTACCGATA-CCCCATGTAAGATTTGGCTCCGAGAAATAATAGATTGCTC
1 AGAGGGTACCGATACCCCCATGTAAGATTTGACTACGAGAAATAACAGATTGCTC
6934300 AGAGGGTACCGA
1 AGAGGGTACCGA
6934312 GGAGGTACCG
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
54 46 0.79
55 12 0.21
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (55 bp):
AGAGGGTACCGATACCCCCATGTAAGATTTGACTACGAGAAATAACAGATTGCTC
Found at i:6948677 original size:25 final size:24
Alignment explanation
Indices: 6948628--6948677 Score: 57
Period size: 25 Copynumber: 2.0 Consensus size: 24
6948618 TAAAATAAAT
*
6948628 TTATAAAATTTTGAGGTGAGTAAAC
1 TTATAAAATTTAGAGGTGAG-AAAC
6948653 TTATAAAATTCTAGAAGGTGA-AAAC
1 TTATAAAATT-TAG-AGGTGAGAAAC
6948678 ATATTATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
25 14 0.64
26 2 0.09
27 6 0.27
ACGTcount: A:0.44, C:0.06, G:0.18, T:0.32
Consensus pattern (24 bp):
TTATAAAATTTAGAGGTGAGAAAC
Found at i:6952036 original size:13 final size:13
Alignment explanation
Indices: 6952018--6952043 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6952008 AAAACCCAAC
6952018 CATATGAAGATTG
1 CATATGAAGATTG
6952031 CATATGAAGATTG
1 CATATGAAGATTG
6952044 TTCAACTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (13 bp):
CATATGAAGATTG
Found at i:6955831 original size:23 final size:23
Alignment explanation
Indices: 6955805--6955853 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
6955795 GAAGGACCAG
6955805 ATAGGTTTGCACCGAAGTGCCAC
1 ATAGGTTTGCACCGAAGTGCCAC
* *
6955828 ATAGGTTTGCACTGAAGTTCCAC
1 ATAGGTTTGCACCGAAGTGCCAC
6955851 ATA
1 ATA
6955854 TTTACCCCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
ATAGGTTTGCACCGAAGTGCCAC
Found at i:6955871 original size:21 final size:21
Alignment explanation
Indices: 6955847--6955896 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
6955837 CACTGAAGTT
*
6955847 CCACATATTTACCCCGAAGGA
1 CCACATAATTACCCCGAAGGA
*
6955868 CCACATAATTATCCCGAAGGA
1 CCACATAATTACCCCGAAGGA
6955889 CCACATAA
1 CCACATAA
6955897 AACCCTCGAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.38, C:0.32, G:0.12, T:0.18
Consensus pattern (21 bp):
CCACATAATTACCCCGAAGGA
Found at i:6956430 original size:20 final size:22
Alignment explanation
Indices: 6956405--6956459 Score: 69
Period size: 23 Copynumber: 2.5 Consensus size: 22
6956395 CATGCTTAGA
*
6956405 GGTATCGGTACCA-CCC-TAAG
1 GGTATCGATACCACCCCTTAAG
*
6956425 GGTATCGATACTACCCCTTTAAG
1 GGTATCGATACCACCCC-TTAAG
6956448 GGTATCGATACC
1 GGTATCGATACC
6956460 TCCTCATGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 11 0.38
21 3 0.10
23 15 0.52
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (22 bp):
GGTATCGATACCACCCCTTAAG
Found at i:6956562 original size:54 final size:52
Alignment explanation
Indices: 6956442--6956571 Score: 163
Period size: 54 Copynumber: 2.4 Consensus size: 52
6956432 ATACTACCCC
* * **
6956442 TTTAAGGGTATCGATACCTCCTCATGTACCGATATTGAAATAAGGTTCGATGT
1 TTTAAGGGTATCGATACCTCCTCACGTACAGATACCGAAATAA-GTTCGATGT
*
6956495 TTCAAGGGTATCGATACCTCCTCAACGTACAGATACCGAAAGTATA-TTCGATGT
1 TTTAAGGGTATCGATACCTCCTC-ACGTACAGATACCGAAA-TA-AGTTCGATGT
6956549 TTTAAGGGTATCGATACCATCCT
1 TTTAAGGGTATCGATACC-TCCT
6956572 TCAGGTATCG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
53 22 0.33
54 38 0.57
55 6 0.09
56 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (52 bp):
TTTAAGGGTATCGATACCTCCTCACGTACAGATACCGAAATAAGTTCGATGT
Found at i:6956578 original size:20 final size:20
Alignment explanation
Indices: 6956555--6956604 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
6956545 ATGTTTTAAG
6956555 GGTATCGATACCATCCTTCA
1 GGTATCGATACCATCCTTCA
6956575 GGTATCGATACCATCCTTCA
1 GGTATCGATACCATCCTTCA
*
6956595 AGTATCGATA
1 GGTATCGATA
6956605 ACACCCTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (20 bp):
GGTATCGATACCATCCTTCA
Found at i:6960088 original size:15 final size:15
Alignment explanation
Indices: 6960068--6960103 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
6960058 TTAAAGTTTA
6960068 AAATATTATTATTA-T
1 AAATATT-TTATTATT
6960083 AAATATTTTATTATT
1 AAATATTTTATTATT
6960098 AAATAT
1 AAATAT
6960104 ATTTTTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
AAATATTTTATTATT
Found at i:6960095 original size:17 final size:17
Alignment explanation
Indices: 6960073--6960108 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
6960063 GTTTAAAATA
6960073 TTATTATTATAA-ATATT
1 TTATTATTA-AATATATT
6960090 TTATTATTAAATATATT
1 TTATTATTAAATATATT
6960107 TT
1 TT
6960109 TCTTTAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 2 0.11
17 16 0.89
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATTATTAAATATATT
Found at i:6961660 original size:14 final size:14
Alignment explanation
Indices: 6961641--6961678 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
6961631 TTGTTACATT
6961641 GCATTTGCATCTTC
1 GCATTTGCATCTTC
6961655 GCATTTGCATCTTC
1 GCATTTGCATCTTC
6961669 GCATTTGCAT
1 GCATTTGCAT
6961679 AATCATCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (14 bp):
GCATTTGCATCTTC
Found at i:6962711 original size:26 final size:27
Alignment explanation
Indices: 6962682--6962749 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 27
6962672 AAATCGATAC
*
6962682 TTTTTGCATTTGCATTTGCATTCACA-
1 TTTTTGCATTTGCATTTACATTCACAT
* * * **
6962708 TTTTTACGTTTGTATTTACATTTTCAT
1 TTTTTGCATTTGCATTTACATTCACAT
6962735 TTTTTGCATTTGCAT
1 TTTTTGCATTTGCAT
6962750 CTTTGCATAG
Statistics
Matches: 32, Mismatches: 9, Indels: 1
0.76 0.21 0.02
Matches are distributed among these distances:
26 20 0.62
27 12 0.38
ACGTcount: A:0.18, C:0.15, G:0.10, T:0.57
Consensus pattern (27 bp):
TTTTTGCATTTGCATTTACATTCACAT
Found at i:6968076 original size:136 final size:136
Alignment explanation
Indices: 6967739--6968081 Score: 514
Period size: 132 Copynumber: 2.6 Consensus size: 136
6967729 CCGTTGCTCA
* * *
6967739 ATTCACGGTATTTCGAATCAGTGATGCCTCACTTGAGGGATTGGCATTTCTATTTGAGAGTTCAT
1 ATTCACGGTATTTCGAATCAGTGATGCCTCGCTTGAGGGATTGACATTTCTAATTGAGAGTTCAT
* * *
6967804 AATAAGAAGAAATAATCCGACAGAGGGAAAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTAT
66 AATGAGAAGAAATAATCCGACAAAGAGAAAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTAT
6967869 CACCCG
131 CACCCG
* *
6967875 ----ACGGCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTGACATTTCTAATTGAGAGTTCAT
1 ATTCACGGTATTTCGAATCAGTGATGCCTCGCTTGAGGGATTGACATTTCTAATTGAGAGTTCAT
* * * *
6967936 AATGAGAAGAACTCATCCGACAAAGAGAGAAGAAGTTCATAATGAGAAGAGCTTGTTTGACCTAT
66 AATGAGAAGAAATAATCCGACAAAGAGAAAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTAT
*
6968001 CACTCG
131 CACCCG
* * *
6968007 ATTCACGGTATTTCAAATCAGTGATGCCTCGCTTGAGGGATTGACATTTCCAATTAAGAGTTCAT
1 ATTCACGGTATTTCGAATCAGTGATGCCTCGCTTGAGGGATTGACATTTCTAATTGAGAGTTCAT
6968072 AATGAGAAGA
66 AATGAGAAGA
6968082 GCTTGTTCGA
Statistics
Matches: 185, Mismatches: 18, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
132 119 0.64
136 66 0.36
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (136 bp):
ATTCACGGTATTTCGAATCAGTGATGCCTCGCTTGAGGGATTGACATTTCTAATTGAGAGTTCAT
AATGAGAAGAAATAATCCGACAAAGAGAAAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTAT
CACCCG
Found at i:6968134 original size:96 final size:96
Alignment explanation
Indices: 6967964--6968177 Score: 338
Period size: 96 Copynumber: 2.2 Consensus size: 96
6967954 GACAAAGAGA
* * *
6967964 GAAGAAGTTCATAATGAGAAGAGCTTGTTTGACCTATCACTCGATTCACGGTATTTCAAATCAGT
1 GAAG-AGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCAAGGGATTTCAAATCAGT
*
6968029 GATGCCTCGCTTGAGGGATTGACATTTCCAAT
65 GATGACTCGCTTGAGGGATTGACATTTCCAAT
* * **
6968061 TAAGAGTTCATAATGAGAAGAGCTTGTTCGATCTATCACTCGATTCAAGGGATTTTGAATCAGTG
1 GAAGAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCAAGGGATTTCAAATCAGTG
6968126 ATGACTCGCTTGAGGGATTGACATTTCCAAT
66 ATGACTCGCTTGAGGGATTGACATTTCCAAT
*
6968157 GGAGAGTTCATAATGAGAAGA
1 GAAGAGTTCATAATGAGAAGA
6968178 ACTCATCCGA
Statistics
Matches: 107, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
96 104 0.97
97 3 0.03
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.30
Consensus pattern (96 bp):
GAAGAGTTCATAATGAGAAGAGCTTGTTCGACCTATCACTCGATTCAAGGGATTTCAAATCAGTG
ATGACTCGCTTGAGGGATTGACATTTCCAAT
Found at i:6968239 original size:232 final size:228
Alignment explanation
Indices: 6967837--6968313 Score: 733
Period size: 232 Copynumber: 2.1 Consensus size: 228
6967827 AGGGAAAAGA
*
6967837 AGTTCATAATGAGAAGAGCTTGTTCGACCTATCACCCGACGGCATTTCGAATCAGTGACGCCTCG
1 AGTTCATAATGAGAAGAGCTTGTTCGACCTATCACCCGACGGCATTTCGAATCAGTGACGACTCG
* *
6967902 CTTGAGGGATTGACATTTCTAATTGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGAGAGAA
66 CTTGAGGGATTGACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGAGAGAA
* * *
6967967 GAAGTTCATAATGAGAAGAGCTTGTTTGACCTATCACTCGATTCACGGTATTTCAAATCAGTGAT
131 GAAGTTCATAATGAGAAAAGCTTGTTTGACCTATCACTCGATTCACGGCATTTCAAATCAGTGAC
* *
6968032 GCCTCGCTTGAGGGATTGACATTTCCAATTAAG
196 GCCTCACTTGAGGGATTGACATTTCCAATGAAG
* * * * *
6968065 AGTTCATAATGAGAAGAGCTTGTTCGATCTATCACTCGATTCAAGGGATTTTGAATCAGTGATGA
1 AGTTCATAATGAGAAGAGCTTGTTCGACCTATCACCCGA--C--GGCATTTCGAATCAGTGACGA
* *
6968130 CTCGCTTGAGGGATTGACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGAGAGAA-T
62 CTCGCTTGAGGGATTGACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACA-AAGA
*
6968194 GAGAAGAAGTTCATAATGAGAAAAGCTTGTTCT-ACCTATCACTCGATTCACGGCATTTCGAATC
126 GAGAAGAAGTTCATAATGAGAAAAGCTTGTT-TGACCTATCACTCGATTCACGGCATTTCAAATC
*
6968258 AGTGACGCCTCACTTGAGGGATTGACATTTCCAATGGAG
190 AGTGACGCCTCACTTGAGGGATTGACATTTCCAATGAAG
6968297 AGTTCATAATGAGAAGA
1 AGTTCATAATGAGAAGA
6968314 ACTCATCCGA
Statistics
Matches: 226, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
228 37 0.16
230 1 0.00
232 185 0.82
233 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (228 bp):
AGTTCATAATGAGAAGAGCTTGTTCGACCTATCACCCGACGGCATTTCGAATCAGTGACGACTCG
CTTGAGGGATTGACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAAAGAGAGAA
GAAGTTCATAATGAGAAAAGCTTGTTTGACCTATCACTCGATTCACGGCATTTCAAATCAGTGAC
GCCTCACTTGAGGGATTGACATTTCCAATGAAG
Found at i:6968309 original size:136 final size:134
Alignment explanation
Indices: 6968065--6968487 Score: 613
Period size: 136 Copynumber: 3.2 Consensus size: 134
6968055 TCCAATTAAG
* * * * * *
6968065 AGTTCATAATGAGAAGAGCTTGTTCGATCTATCACTCGATTCAAGGGATTTTGAATCAGTGATGA
1 AGTTCATAATGAGAAGAGCTTGTTCAACCTATCACTCGATTCAAGGCATTTCGAATCAGTGACGC
6968130 CTCGCTTGAGGGATTGACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGAGAGAATG
66 CTCGCTTGAGGGATTGACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGA-AGAA-G
6968195 AGAAGA
129 AGAAGA
* * *
6968201 AGTTCATAATGAGAAAAGCTTGTTCTACCTATCACTCGATTCACGGCATTTCGAATCAGTGACGC
1 AGTTCATAATGAGAAGAGCTTGTTCAACCTATCACTCGATTCAAGGCATTTCGAATCAGTGACGC
* *
6968266 CTCACTTGAGGGATTGACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGAAAGAGGG
66 CTCGCTTGAGGGATTGACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCG-AAGA-AG
6968331 AGAAGA
129 AGAAGA
* * *
6968337 AGTTCATAATGAGAAGAGTTTGTTCAACCTATCACTCGATTCATGGCATTTCAAATCAGTGACGC
1 AGTTCATAATGAGAAGAGCTTGTTCAACCTATCACTCGATTCAAGGCATTTCGAATCAGTGACGC
* * *
6968402 CTCGCTTGAGGGATTGACATTTCC-A-GAAGAGTTCATAATGAGAAGAACTCTTCCTAA-AAGAG
66 CTCGCTTGAGGGATTGACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGAAGAAGAG
6968464 -A-A
131 AAGA
*
6968466 AGTTCATAATGAGAAGAACTTG
1 AGTTCATAATGAGAAGAGCTTG
6968488 GACAGAAGGA
Statistics
Matches: 263, Mismatches: 22, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
129 21 0.08
130 1 0.00
131 3 0.01
132 1 0.00
133 2 0.01
134 27 0.10
135 1 0.00
136 206 0.78
137 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.27
Consensus pattern (134 bp):
AGTTCATAATGAGAAGAGCTTGTTCAACCTATCACTCGATTCAAGGCATTTCGAATCAGTGACGC
CTCGCTTGAGGGATTGACATTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGAAGAAGAG
AAGA
Found at i:6968426 original size:368 final size:362
Alignment explanation
Indices: 6967739--6968447 Score: 1078
Period size: 368 Copynumber: 1.9 Consensus size: 362
6967729 CCGTTGCTCA
* * * * * * *
6967739 ATTCACGGTATTTCGAATCAGTGATGCCTCACTTGAGGGATTGGCATTTCTATTTGAGAGTTCAT
1 ATTCAAGGGATTTCGAATCAGTGATGACTCACTTGAGGGATTGACATTTCCAATGGAGAGTTCAT
* *
6967804 AATAAGAAGAAATAATCCGACAGAGGGAAAAGAAGTTCATAATGAGAAGAGCTTGTTCGACCTAT
66 AATAAGAAGAAATAATCCGACAGAAGGAAAAGAAGTTCATAATGAGAAAAGCTTGTTCGACCTAT
* * *
6967869 CACCCGACGGCATTTCGAATCAGTGACGCCTCGCTTGAGGGATTGACATTTCTAATTGAGAGTTC
131 CACCCGACGGCATTTCGAATCAGTGACGCCTCACTTGAGGGATTGACATTTCCAATGGAGAGTTC
**
6967934 ATAATGAGAAGAACTCATCCGACAAAGAGAGAAGAAGTTCATAATGAGAAGAGCTTGTTTGACCT
196 ATAATGAGAAGAACTCATCCGACAAAGAGAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCT
* * *
6967999 ATCACTCGATTCACGGTATTTCAAATCAGTGATGCCTCGCTTGAGGGATTGACATTTCCAATTAA
261 ATCACTCGATTCACGGCATTTCAAATCAGTGACGCCTCGCTTGAGGGATTGACATTTCC-A-GAA
6968064 GAGTTCATAATGAGAAGAGCTTGTTCGATCTATCACTCG
324 GAGTTCATAATGAGAAGAGCTTGTTCGATCTATCACTCG
* *
6968103 ATTCAAGGGATTTTGAATCAGTGATGACTCGCTTGAGGGATTGACATTTCCAATGGAGAGTTCAT
1 ATTCAAGGGATTTCGAATCAGTGATGACTCACTTGAGGGATTGACATTTCCAATGGAGAGTTCAT
* * * * * * *
6968168 AATGAGAAGAACTCATCCGAGAGAATGAGAAGAAGTTCATAATGAGAAAAGCTTGTTCTACCTAT
66 AATAAGAAGAAATAATCCGACAGAAGGAAAAGAAGTTCATAATGAGAAAAGCTTGTTCGACCTAT
*
6968233 CACTCGATTCACGGCATTTCGAATCAGTGACGCCTCACTTGAGGGATTGACATTTCCAATGGAGA
131 CACCCG----ACGGCATTTCGAATCAGTGACGCCTCACTTGAGGGATTGACATTTCCAATGGAGA
* *
6968298 GTTCATAATGAGAAGAACTCATCCGA-AAGAGGGAGAAGAAGTTCATAATGAGAAGAGTTTGTTC
192 GTTCATAATGAGAAGAACTCATCCGACAA-AGAGAGAAGAAGTTCATAATGAGAAGAGCTTGTTC
*
6968362 AACCTATCACTCGATTCATGGCATTTCAAATCAGTGACGCCTCGCTTGAGGGATTGACATTTCCA
256 AACCTATCACTCGATTCACGGCATTTCAAATCAGTGACGCCTCGCTTGAGGGATTGACATTTCCA
6968427 GAAGAGTTCATAATGAGAAGA
321 GAAGAGTTCATAATGAGAAGA
6968448 ACTCTTCCTA
Statistics
Matches: 310, Mismatches: 30, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
364 117 0.38
366 20 0.06
367 3 0.01
368 170 0.55
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.27
Consensus pattern (362 bp):
ATTCAAGGGATTTCGAATCAGTGATGACTCACTTGAGGGATTGACATTTCCAATGGAGAGTTCAT
AATAAGAAGAAATAATCCGACAGAAGGAAAAGAAGTTCATAATGAGAAAAGCTTGTTCGACCTAT
CACCCGACGGCATTTCGAATCAGTGACGCCTCACTTGAGGGATTGACATTTCCAATGGAGAGTTC
ATAATGAGAAGAACTCATCCGACAAAGAGAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCT
ATCACTCGATTCACGGCATTTCAAATCAGTGACGCCTCGCTTGAGGGATTGACATTTCCAGAAGA
GTTCATAATGAGAAGAGCTTGTTCGATCTATCACTCG
Found at i:6968609 original size:91 final size:91
Alignment explanation
Indices: 6968509--6968951 Score: 688
Period size: 91 Copynumber: 4.9 Consensus size: 91
6968499 GTGAATCAAC
* * * * ** * *
6968509 ATTTTCAATGGAGAGTTCATAATGAGAATAACTCATTCAATAAGAAAAAAGAAGTTCATAATGAG
1 ATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATCCAACGAGGAAGAAGAAGTTCATAATGAG
* *
6968574 AAGAACTTGTTCCACCTTGCATTAGT
66 AAGAACTTGTTCAACCTTGCATCAGT
*
6968600 ATTTCCAATGAAGAGTTCATAATGAGAAGAACTTATCCAACGAGGAAGAAGAAGTTCATAATGAG
1 ATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATCCAACGAGGAAGAAGAAGTTCATAATGAG
6968665 AAGAACTTGTTCAACCTTGCATCAGT
66 AAGAACTTGTTCAACCTTGCATCAGT
* *
6968691 ATTTCTAATGAAGAGTTCATAATGAGAAGAACTCATCCAACGAGAAAGAAGAAGTTCATAATGAG
1 ATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATCCAACGAGGAAGAAGAAGTTCATAATGAG
6968756 AAGAACTTGTTCAACCTTGCATCAGT
66 AAGAACTTGTTCAACCTTGCATCAGT
* * **
6968782 ATTTCCAATGAAGAGTTCATAATGAGAAGCACTCGTCCAATAAGGAAGAAGAAGTTCATAATGAG
1 ATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATCCAACGAGGAAGAAGAAGTTCATAATGAG
* *
6968847 AAGAACTTGCTCCACCTTGCATCAGT
66 AAGAACTTGTTCAACCTTGCATCAGT
* *
6968873 ATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATCCAACGAGGAAGAAGATGTTTATAATGAG
1 ATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATCCAACGAGGAAGAAGAAGTTCATAATGAG
*
6968938 AAGAACTTATTCAA
66 AAGAACTTGTTCAA
6968952 TCCAATTCTT
Statistics
Matches: 321, Mismatches: 31, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 321 1.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (91 bp):
ATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATCCAACGAGGAAGAAGAAGTTCATAATGAG
AAGAACTTGTTCAACCTTGCATCAGT
Found at i:6968676 original size:20 final size:20
Alignment explanation
Indices: 6968614--6968677 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
6968604 CCAATGAAGA
6968614 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
* * * ***
6968634 -ATC-CAACGAGGAAGAAGAA
1 GTTCATAATGA-GAAGAACTT
6968653 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
6968673 GTTCA
1 GTTCA
6968678 ACCTTGCATC
Statistics
Matches: 29, Mismatches: 12, Indels: 6
0.62 0.26 0.13
Matches are distributed among these distances:
18 4 0.14
19 8 0.28
20 13 0.45
21 4 0.14
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.23
Consensus pattern (20 bp):
GTTCATAATGAGAAGAACTT
Found at i:6971074 original size:17 final size:17
Alignment explanation
Indices: 6971048--6971089 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
6971038 TTTTAAAGTT
6971048 TAAA-ATTTTATTATTA
1 TAAATATTTTATTATTA
6971064 TAAATATTTTATTATTA
1 TAAATATTTTATTATTA
6971081 -AATATATTT
1 TAA-ATATTT
6971090 CTCTTTAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TAAATATTTTATTATTA
Found at i:6971082 original size:15 final size:16
Alignment explanation
Indices: 6971046--6971085 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
6971036 ATTTTTAAAG
6971046 TTTAAA-ATTTTATTA
1 TTTAAATATTTTATTA
6971061 TTATAAATATTTTATTA
1 TT-TAAATATTTTATTA
6971078 -TTAAATAT
1 TTTAAATAT
6971086 ATTTCTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 9 0.39
16 5 0.22
17 9 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TTTAAATATTTTATTA
Found at i:6972870 original size:14 final size:14
Alignment explanation
Indices: 6972853--6972886 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
6972843 TTCTTATATC
6972853 TGGTTTCTAATTAA
1 TGGTTTCTAATTAA
*
6972867 TGGTTTCTAATTAC
1 TGGTTTCTAATTAA
6972881 TGGTTT
1 TGGTTT
6972887 TTAACACAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.21, C:0.09, G:0.18, T:0.53
Consensus pattern (14 bp):
TGGTTTCTAATTAA
Found at i:6976850 original size:40 final size:40
Alignment explanation
Indices: 6976795--6976916 Score: 235
Period size: 40 Copynumber: 3.0 Consensus size: 40
6976785 TGCAGGTTTA
6976795 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
6976835 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
*
6976875 TAATACACTTCAGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
6976915 TA
1 TA
6976917 GCACTACGGT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (40 bp):
TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
Found at i:6983823 original size:40 final size:40
Alignment explanation
Indices: 6983768--6983889 Score: 235
Period size: 40 Copynumber: 3.0 Consensus size: 40
6983758 TGCAGGTTTA
6983768 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
6983808 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
*
6983848 TAATACACTTCAGTGTATATGGTGGGCACGACCTTATGTG
1 TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
6983888 TA
1 TA
6983890 GCACTACGGT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (40 bp):
TAATACACTTCGGTGTATATGGTGGGCACGACCTTATGTG
Found at i:6985370 original size:23 final size:23
Alignment explanation
Indices: 6985305--6985386 Score: 91
Period size: 23 Copynumber: 3.7 Consensus size: 23
6985295 CAAATTGTAA
*
6985305 TTTGCATCGAAGTGCCACATA--
1 TTTGCACCGAAGTGCCACATAGG
* *
6985326 ATTGTC-CCGAA-TGACCAAATAGG
1 TTTG-CACCGAAGTG-CCACATAGG
6985349 TTTGCACCGAAGTGCCACATAGG
1 TTTGCACCGAAGTGCCACATAGG
6985372 TTTGCACCGAAGTGC
1 TTTGCACCGAAGTGC
6985387 TACGTAATTG
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
20 2 0.04
21 13 0.26
22 2 0.04
23 31 0.62
24 2 0.04
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.24
Consensus pattern (23 bp):
TTTGCACCGAAGTGCCACATAGG
Found at i:6986369 original size:42 final size:43
Alignment explanation
Indices: 6986268--6986369 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 43
6986258 TACCATAACC
*
6986268 ATGGTATCGATACTA-CTAGCTCAGTATCCATACCTTCCTCAA
1 ATGGTATCGATACTACCTAGCTCAGTATCCATAACTTCCTCAA
* * * * * *
6986310 ACGATATCGATATTACCT-GCTCAGTATCGATAACTTCTTGAA
1 ATGGTATCGATACTACCTAGCTCAGTATCCATAACTTCCTCAA
6986352 ATGGTATCGATACTACCT
1 ATGGTATCGATACTACCT
6986370 TTAGCAAACC
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
42 47 0.96
43 2 0.04
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (43 bp):
ATGGTATCGATACTACCTAGCTCAGTATCCATAACTTCCTCAA
Found at i:6992128 original size:117 final size:116
Alignment explanation
Indices: 6991918--6992209 Score: 415
Period size: 117 Copynumber: 2.5 Consensus size: 116
6991908 TTTCCCGAAA
** *
6991918 CATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCACGAAGCTGAGGAGCCTGCAGTAAT
1 CATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCAC-AAGCAAAAGAGCCTGCAGTAAT
* * * *
6991983 AACGTCTCCATCCAGTCGCTTTCATCACTACAATGTGTAGGTTCCTCAGAAC
65 AACGTCCCCATCCAGTCACTTCCATCACTACAATGTGTAGGTTCCCCAGAAC
* * *
6992035 CATACATCCACCTGCACACCAGTAAAGACTTACCCTAAGCACATAGCAAAAGAGTCTGCAGTAAT
1 CATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCACA-AGCAAAAGAGCCTGCAGTAAT
*
6992100 AACTTCCCCATCCAGTCAC-TCCACTCACTACAATGTGTAGGTTCCCCAGAAC
65 AACGTCCCCATCCAGTCACTTCCA-TCACTACAATGTGTAGGTTCCCCAGAAC
* * *
6992152 CATACACCCACCTGCACACTAGTAAGGACTTACCCTGAGCACACAGCAAAGGAGCCTG
1 CATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCACA-AGCAAAAGAGCCTG
6992210 AAATACTTTC
Statistics
Matches: 155, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
116 4 0.03
117 151 0.97
ACGTcount: A:0.32, C:0.33, G:0.16, T:0.20
Consensus pattern (116 bp):
CATACACCCACCTGCACACCAGTAAGGACTTACCCTAAGCACAAGCAAAAGAGCCTGCAGTAATA
ACGTCCCCATCCAGTCACTTCCATCACTACAATGTGTAGGTTCCCCAGAAC
Found at i:6999440 original size:117 final size:117
Alignment explanation
Indices: 6999270--6999560 Score: 406
Period size: 117 Copynumber: 2.5 Consensus size: 117
6999260 TTTCCCGAAA
* **
6999270 CATACACCCACTTGCACACCAGTAAGGACTTACCCTAAGCACGA-AGCTGAGGAGCCTACAGTAA
1 CATACACCCACATGCACACCAGTAAGGACTTACCCTAAGCAC-ACAGCAAAGGAGCCTACAGTAA
* * * *
6999334 TAACGTCTCCATCCAGTCGCTTTCA-TCACTACAATGTGTAGGTTCCTCAGAAC
65 TAACGTCCCCATCCAGTCAC-TCCACTCACTACAATGTGTAGGTTCCCCAGAAC
* * *
6999387 CATACACCCACATGCACACCAGTAAAGACTTACCCTAAGCACACAACAAAGGAGTCTACAGTAAT
1 CATACACCCACATGCACACCAGTAAGGACTTACCCTAAGCACACAGCAAAGGAGCCTACAGTAAT
* *
6999452 AACTTCCCCATCCAGTCACTCCACTCATTACAATGTGTAGGTTCCCCAGAAC
66 AACGTCCCCATCCAGTCACTCCACTCACTACAATGTGTAGGTTCCCCAGAAC
* * * *
6999504 CATACACCTACCTACACACCAGTAAGGACTTACCCTGAGCACACAGCAAAGGAGCCT
1 CATACACCCACATGCACACCAGTAAGGACTTACCCTAAGCACACAGCAAAGGAGCCT
6999561 GAAATACTTT
Statistics
Matches: 153, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
116 4 0.03
117 149 0.97
ACGTcount: A:0.33, C:0.33, G:0.15, T:0.20
Consensus pattern (117 bp):
CATACACCCACATGCACACCAGTAAGGACTTACCCTAAGCACACAGCAAAGGAGCCTACAGTAAT
AACGTCCCCATCCAGTCACTCCACTCACTACAATGTGTAGGTTCCCCAGAAC
Found at i:7000560 original size:7 final size:7
Alignment explanation
Indices: 7000548--7000573 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7000538 AGAATATCAC
7000548 CGGTCAA
1 CGGTCAA
7000555 CGGTCAA
1 CGGTCAA
7000562 CGGTCAA
1 CGGTCAA
7000569 CGGTC
1 CGGTC
7000574 GGGTCGGGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (7 bp):
CGGTCAA
Found at i:7002920 original size:32 final size:31
Alignment explanation
Indices: 7002866--7002928 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 31
7002856 TATTGAGTAA
* * *
7002866 AGTATGTGTTTAGTACCTAAATTATCAGTTTT
1 AGTATGTGTTTAATACCAAAATT-TCAATTTT
7002898 AGTATGT-TTTAATACCAAAAATTTCAATTTT
1 AGTATGTGTTTAATACC-AAAATTTCAATTTT
7002929 TTAAAACCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 15 0.56
32 12 0.44
ACGTcount: A:0.33, C:0.10, G:0.11, T:0.46
Consensus pattern (31 bp):
AGTATGTGTTTAATACCAAAATTTCAATTTT
Found at i:7010110 original size:26 final size:27
Alignment explanation
Indices: 7010048--7010110 Score: 74
Period size: 31 Copynumber: 2.2 Consensus size: 27
7010038 CGAGTATCAT
7010048 TGAGCTCGACTCGACTCGAAAACTCTGAAA
1 TGAGCTCGACTCGACTCGAAAACTC---AA
*
7010078 TACAGCTCGACTCGACTCGAAAACTC-A
1 T-GAGCTCGACTCGACTCGAAAACTCAA
7010105 TGAGCT
1 TGAGCT
7010111 TAAAATTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
26 4 0.13
27 2 0.07
30 1 0.03
31 23 0.77
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.21
Consensus pattern (27 bp):
TGAGCTCGACTCGACTCGAAAACTCAA
Found at i:7010718 original size:11 final size:10
Alignment explanation
Indices: 7010692--7010717 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7010682 TTAAAATTAT
7010692 AAAAAATGCA
1 AAAAAATGCA
7010702 AAAAAATGCA
1 AAAAAATGCA
7010712 AAAAAA
1 AAAAAA
7010718 AAATAAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.77, C:0.08, G:0.08, T:0.08
Consensus pattern (10 bp):
AAAAAATGCA
Found at i:7013761 original size:31 final size:30
Alignment explanation
Indices: 7013703--7013791 Score: 83
Period size: 31 Copynumber: 2.9 Consensus size: 30
7013693 TTAACTTTTA
* *
7013703 GAAAAGA-AAAATAATAAA-ATATAAAAAAAT
1 GAAAAGAGAAAATAA-AAATA-AAAAAAAAAG
*
7013733 TAAAAGAGAAAATAAAAATAAAACAAAAAAG
1 GAAAAGAGAAAATAAAAATAAAA-AAAAAAG
* * *
7013764 GAAATGGGAAAATAAAGATAAAAAAAAA
1 GAAAAGAGAAAATAAAAATAAAAAAAAA
7013792 TAAAAAAAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
30 16 0.33
31 33 0.67
ACGTcount: A:0.75, C:0.01, G:0.11, T:0.12
Consensus pattern (30 bp):
GAAAAGAGAAAATAAAAATAAAAAAAAAAG
Found at i:7013941 original size:16 final size:16
Alignment explanation
Indices: 7013922--7013972 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
7013912 TAGAAAAGAT
7013922 ATAATAAAATAAAATA
1 ATAATAAAATAAAATA
7013938 ATAAT-AAATAAAATA
1 ATAATAAAATAAAATA
*
7013953 GA-AATATAATAAAATA
1 -ATAATAAAATAAAATA
7013969 ATAA
1 ATAA
7013973 ATAATAGTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
15 14 0.45
16 17 0.55
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (16 bp):
ATAATAAAATAAAATA
Found at i:7013949 original size:20 final size:20
Alignment explanation
Indices: 7013924--7013993 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
7013914 GAAAAGATAT
7013924 AATAAAATAAAATAATAATA
1 AATAAAATAAAATAATAATA
7013944 AATAAAATAGAAAT-ATAATA
1 AATAAAATA-AAATAATAATA
* *
7013964 AA-ATAAT-AAATAATAGT-
1 AATAAAATAAAATAATAATA
7013981 AATAAAGATAAAA
1 AATAAA-ATAAAA
7013994 ATGTTTTTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
17 6 0.14
18 6 0.14
19 6 0.14
20 20 0.48
21 4 0.10
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.24
Consensus pattern (20 bp):
AATAAAATAAAATAATAATA
Found at i:7013957 original size:6 final size:5
Alignment explanation
Indices: 7013924--7013969 Score: 58
Period size: 5 Copynumber: 9.0 Consensus size: 5
7013914 GAAAAGATAT
*
7013924 AATAA AATAA AATAA TAAT-A AATAA AATAGA AATAT AATAA AATAA
1 AATAA AATAA AATAA -AATAA AATAA AATA-A AATAA AATAA AATAA
7013970 TAAATAATAG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
4 3 0.08
5 25 0.69
6 8 0.22
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (5 bp):
AATAA
Found at i:7013976 original size:15 final size:15
Alignment explanation
Indices: 7013929--7013978 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
7013919 GATATAATAA
7013929 AATAAAATAAT-AAT
1 AATAAAATAATAAAT
7013943 AAATAAAATAGA-AATAT
1 -AATAAAATA-ATAA-AT
7013960 AATAAAATAATAAAT
1 AATAAAATAATAAAT
7013975 AATA
1 AATA
7013979 GTAATAAAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
15 16 0.52
16 13 0.42
17 2 0.06
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (15 bp):
AATAAAATAATAAAT
Found at i:7013983 original size:21 final size:20
Alignment explanation
Indices: 7013927--7013995 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 20
7013917 AAGATATAAT
* *
7013927 AAAATAAAATAATAATAAATA
1 AAAATAATATAATAA-AGATA
*
7013948 AAATAGAAATATAATAAA-ATA
1 AAA-A-TAATATAATAAAGATA
7013969 ATAAATAATAGTAATAAAGATA
1 A-AAATAATA-TAATAAAGATA
7013991 AAAAT
1 AAAAT
7013996 GTTTTTTTAA
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
20 4 0.10
21 19 0.47
22 8 0.20
23 9 0.22
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (20 bp):
AAAATAATATAATAAAGATA
Found at i:7013994 original size:28 final size:28
Alignment explanation
Indices: 7013923--7013995 Score: 78
Period size: 28 Copynumber: 2.5 Consensus size: 28
7013913 AGAAAAGATA
7013923 TAATAAAATAAAATAATAATAAATAAAATAG
1 TAATAAAAT-AAA-AATAATAAAT-AAATAG
* *
7013954 AAATATAAT-AAAATAATAAAT-AATAG
1 TAATAAAATAAAAATAATAAATAAATAG
7013980 TAATAAAGATAAAAAT
1 TAATAAA-ATAAAAAT
7013996 GTTTTTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
26 10 0.28
27 2 0.06
28 15 0.42
29 2 0.06
31 7 0.19
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (28 bp):
TAATAAAATAAAAATAATAAATAAATAG
Found at i:7014039 original size:18 final size:18
Alignment explanation
Indices: 7014018--7014059 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
7014008 GTTGTTTTTA
* *
7014018 AAATAAAAGATAATTATT
1 AAATAAAAGAAAATGATT
7014036 AAATAAAAGAAAATGATT
1 AAATAAAAGAAAATGATT
7014054 AAATAA
1 AAATAA
7014060 GTAATTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (18 bp):
AAATAAAAGAAAATGATT
Found at i:7014674 original size:2 final size:2
Alignment explanation
Indices: 7014667--7014699 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7014657 TAAAAAGATA
7014667 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7014700 AATAAGTCTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7015617 original size:23 final size:23
Alignment explanation
Indices: 7015591--7015638 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
7015581 ATAAAGTACA
*
7015591 ATAACATACTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
7015614 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
7015637 AT
1 AT
7015639 TGACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:7016154 original size:23 final size:23
Alignment explanation
Indices: 7016119--7016191 Score: 119
Period size: 23 Copynumber: 3.2 Consensus size: 23
7016109 ATACTTTACA
*
7016119 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
7016142 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
7016165 ATATAAGCGCTACCTATTACATC
1 ATATAAGCGCTACCTATTACATT
7016188 ATAT
1 ATAT
7016192 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.34
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:7016633 original size:21 final size:21
Alignment explanation
Indices: 7016603--7016657 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 21
7016593 GATAAATACT
* *
7016603 TTACAATATAAGCACTACCTA
1 TTACATTATAAACACTACCTA
*
7016624 TTACATTATATAAACGCTACCTA
1 TTACA-T-TATAAACACTACCTA
7016647 TTACATTATAA
1 TTACATTATAA
7016658 TTCTGGGTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 10 0.34
22 1 0.03
23 18 0.62
ACGTcount: A:0.42, C:0.20, G:0.04, T:0.35
Consensus pattern (21 bp):
TTACATTATAAACACTACCTA
Found at i:7016643 original size:23 final size:23
Alignment explanation
Indices: 7016608--7016656 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
7016598 ATACTTTACA
*
7016608 ATATAAGCACTACCTATTACATT
1 ATATAAACACTACCTATTACATT
*
7016631 ATATAAACGCTACCTATTACATT
1 ATATAAACACTACCTATTACATT
7016654 ATA
1 ATA
7016657 ATTCTGGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.41, C:0.20, G:0.04, T:0.35
Consensus pattern (23 bp):
ATATAAACACTACCTATTACATT
Found at i:7016952 original size:183 final size:183
Alignment explanation
Indices: 7016644--7017309 Score: 1158
Period size: 183 Copynumber: 3.6 Consensus size: 183
7016634 TAAACGCTAC
* *
7016644 CTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACTTTTTGACAAGGTATCGACAA
1 CTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACTTTTTGACAATGTATCGACAC
7016709 ATTTTTCTTCCAATCTGGACATAAAGTTCCGACACAATATTAAAAAGTGTCGATATAGGTTGTAG
66 ATTTTTCTTCCAATCTGGACATAAAGTTCCGACACAATATTAAAAAGTGTCGATATAGGTTGTAG
7016774 ACCTATTCGCTCATAAAACCGG-ATTATTTATACCGGTTATATTACAAAATTAT
131 ACCTATTCGCTCATAAAACCGGTA-TATTTATACCGGTTATATTACAAAATTAT
7016827 CTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACTTTTTGACAATGTATCGACAC
1 CTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACTTTTTGACAATGTATCGACAC
7016892 ATTTTTCTTCCAATCTGGACATAAAGTTCCGACACAATATTAAAAAGTGTCGATATAGGTTGTAG
66 ATTTTTCTTCCAATCTGGACATAAAGTTCCGACACAATATTAAAAAGTGTCGATATAGGTTGTAG
*
7016957 ACCTATTCGCTCATAAAACTGGTATATTTATACCGGTTATATTACAAAATTAT
131 ACCTATTCGCTCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTAT
7017010 CTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACTTTTTGACAATGTATCGACAC
1 CTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACTTTTTGACAATGTATCGACAC
*
7017075 ATTTTTCTTCCAATCTGGACATAAAGTTCTGACACAATATTAAAAAGTGTCGATATAGGTTGTAG
66 ATTTTTCTTCCAATCTGGACATAAAGTTCCGACACAATATTAAAAAGTGTCGATATAGGTTGTAG
7017140 ACCTATTCGCTCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTAT
131 ACCTATTCGCTCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTAT
* * * * *
7017193 CTATTACATTATAATTTTGGGTTCCGATGTTTTTTCAATAT-GACACTTTTTTA-AATGGTATCG
1 CTATTACATTATAATTCTGGGTTCCGATG---TGTAAATGTCGACACTTTTTGACAAT-GTATCG
* * *
7017256 ACACATTTTTCTTCCATTCTGGACATAAAGTACAGACACAATATTAAAAAGTGT
62 ACACATTTTTCTTCCAATCTGGACATAAAGTTCCGACACAATATTAAAAAGTGT
7017310 GAAAACTTTG
Statistics
Matches: 465, Mismatches: 13, Indels: 8
0.96 0.03 0.02
Matches are distributed among these distances:
183 387 0.83
184 4 0.01
185 68 0.15
186 6 0.01
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (183 bp):
CTATTACATTATAATTCTGGGTTCCGATGTGTAAATGTCGACACTTTTTGACAATGTATCGACAC
ATTTTTCTTCCAATCTGGACATAAAGTTCCGACACAATATTAAAAAGTGTCGATATAGGTTGTAG
ACCTATTCGCTCATAAAACCGGTATATTTATACCGGTTATATTACAAAATTAT
Found at i:7017983 original size:12 final size:12
Alignment explanation
Indices: 7017968--7017992 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7017958 AAACATCATT
7017968 GAGATCTTTACA
1 GAGATCTTTACA
7017980 GAGATCTTTACA
1 GAGATCTTTACA
7017992 G
1 G
7017993 TAGGTAACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (12 bp):
GAGATCTTTACA
Found at i:7018544 original size:12 final size:12
Alignment explanation
Indices: 7018528--7018590 Score: 81
Period size: 12 Copynumber: 5.2 Consensus size: 12
7018518 CTTGTTTGGA
* *
7018528 TCATCATCATCA
1 TCATCTTCATCG
7018540 TCATCTTCATCG
1 TCATCTTCATCG
* *
7018552 TCAGCTTTATCG
1 TCATCTTCATCG
*
7018564 TCATCATCATCG
1 TCATCTTCATCG
7018576 TCATCTTCATCG
1 TCATCTTCATCG
7018588 TCA
1 TCA
7018591 GATTCATCTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 43 1.00
ACGTcount: A:0.22, C:0.32, G:0.08, T:0.38
Consensus pattern (12 bp):
TCATCTTCATCG
Found at i:7018597 original size:24 final size:25
Alignment explanation
Indices: 7018528--7018603 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 25
7018518 CTTGTTTGGA
* *
7018528 TCATCATCATCATCATC-TTCATCG
1 TCATCTTCATCGTCATCATTCATCG
* *
7018552 TCAGCTTTATCGTCATCA-TCATCG
1 TCATCTTCATCGTCATCATTCATCG
* *
7018576 TCATCTTCATCGTCA-GATTCATCT
1 TCATCTTCATCGTCATCATTCATCG
7018600 TCAT
1 TCAT
7018604 TGACCGCTTG
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
23 1 0.02
24 41 0.98
ACGTcount: A:0.22, C:0.30, G:0.08, T:0.39
Consensus pattern (25 bp):
TCATCTTCATCGTCATCATTCATCG
Found at i:7018602 original size:6 final size:6
Alignment explanation
Indices: 7018528--7018603 Score: 53
Period size: 6 Copynumber: 12.7 Consensus size: 6
7018518 CTTGTTTGGA
* * * * * * * *
7018528 TCATCA TCATCA TCATCT TCATCG TCAGCT TTATCG TCATCA TCATCG
1 TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT TCATCT
* **
7018576 TCATCT TCATCG TCAGAT TCATCT TCAT
1 TCATCT TCATCT TCATCT TCATCT TCAT
7018604 TGACCGCTTG
Statistics
Matches: 53, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
6 53 1.00
ACGTcount: A:0.22, C:0.30, G:0.08, T:0.39
Consensus pattern (6 bp):
TCATCT
Found at i:7020581 original size:201 final size:200
Alignment explanation
Indices: 7020075--7020839 Score: 1325
Period size: 200 Copynumber: 3.8 Consensus size: 200
7020065 AACATTAAAC
* * *
7020075 AGTGTCGATACA-TATTATATACCAATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTG
1 AGTGTCGACACATTATT-TAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTG
*
7020139 AAAAATTACATATTGCATTGTACTTTTGGTTTTCGATGTTTATAGGATCGACACTTTTTATATAT
65 AAAAATTACATATTACATTGTACTTTTGGTTTTCGATGTTTATAGGATCGACACTTTTTATATAT
*
7020204 GGATCGACACTTTATGGTTGCAGCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAAC
130 GGATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAAC
7020269 TAAAAA
195 TAAAAA
*
7020275 AGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATATTTGTACCGGTTAGATTGA
1 AGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
* *
7020340 AAAATTACATATTACATTGTACTTTTGGTTTTCGATGTTTATGGGATCGACACTTTTTATATATA
66 AAAATTACATATTACATTGTACTTTTGGTTTTCGATGTTTATAGGATCGACACTTTTTATATATG
* * *
7020405 GATCGACACTTTATGGTTGCAGCCTGTTTGCCATTCATTCTGGACCAAAATTATCGACACAAAAT
131 GATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
7020470 AAAAAA
196 -AAAAA
7020476 AGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
1 AGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
*
7020541 AAAATTACATATTACATTGTACTTTTGGTTTTCGATGTTTATGGGATCGACACTTTTTATATATG
66 AAAATTACATATTACATTGTACTTTTGGTTTTCGATGTTTATAGGATCGACACTTTTTATATATG
*
7020606 GATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTAGACCAAAAATATCGACACAAACT
131 GATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
*
7020671 ACAAA
196 AAAAA
* *
7020676 AGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGCACCGATTAGATTGA
1 AGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
* * * *
7020741 AAAATTACCTATTACATTATACTTTTGGGTTTCGATGTTTTTAGGATCGACACTTTTTATATATG
66 AAAATTACATATTACATTGTACTTTTGGTTTTCGATGTTTATAGGATCGACACTTTTTATATATG
7020806 GATCGACACTTTATGGTTGCACCCTGTTTGCCAT
131 GATCGACACTTTATGGTTGCACCCTGTTTGCCAT
7020840 ATTGTAAATT
Statistics
Matches: 540, Mismatches: 23, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
200 342 0.63
201 198 0.37
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (200 bp):
AGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
AAAATTACATATTACATTGTACTTTTGGTTTTCGATGTTTATAGGATCGACACTTTTTATATATG
GATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
AAAAA
Found at i:7020818 original size:401 final size:401
Alignment explanation
Indices: 7020075--7020839 Score: 1352
Period size: 401 Copynumber: 1.9 Consensus size: 401
7020065 AACATTAAAC
* *
7020075 AGTGTCGATACATATTATATACCAATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
1 AGTGTCGACACATATTATAGACCAATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
*
7020140 AAAATTACATATTGCATTGTACTTTTGGTTTTCGATGTTTATAGGATCGACACTTTTTATATATG
66 AAAATTACATATTACATTGTACTTTTGGTTTTCGATGTTTATAGGATCGACACTTTTTATATATG
* *
7020205 GATCGACACTTTATGGTTGCAGCCTGTTTGCCATTCATTCTGGACCAAAAATATCGACACAAACT
131 GATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTAGACCAAAAATATCGACACAAACT
* * *
7020270 AAAAAAGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATATTTGTACCGGTTAG
196 AAAAAAGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGCACCGATTAG
* * *
7020335 ATTGAAAAATTACATATTACATTGTACTTTTGGTTTTCGATGTTTATGGGATCGACACTTTTTAT
261 ATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTATAGGATCGACACTTTTTAT
*
7020400 ATATAGATCGACACTTTATGGTTGCAGCCTGTTTGCCATTCATTCTGGACCAAAATTATCGACAC
326 ATATAGATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAATTATCGACAC
7020465 AAAATAAAAAA
391 AAAATAAAAAA
*
7020476 AGTGTCGACACATTATT-TAGACCTATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTG
1 AGTGTCGACACA-TATTATAGACCAATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTG
*
7020540 AAAAATTACATATTACATTGTACTTTTGGTTTTCGATGTTTATGGGATCGACACTTTTTATATAT
65 AAAAATTACATATTACATTGTACTTTTGGTTTTCGATGTTTATAGGATCGACACTTTTTATATAT
7020605 GGATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTAGACCAAAAATATCGACACAAAC
130 GGATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTAGACCAAAAATATCGACACAAAC
*
7020670 TACAAAAGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGCACCGATTA
195 TAAAAAAGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGCACCGATTA
* *
7020735 GATTGAAAAATTACCTATTACATTATACTTTTGGGTTTCGATGTTTTTAGGATCGACACTTTTTA
260 GATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTATAGGATCGACACTTTTTA
*
7020800 TATATGGATCGACACTTTATGGTTGCACCCTGTTTGCCAT
325 TATATAGATCGACACTTTATGGTTGCACCCTGTTTGCCAT
7020840 ATTGTAAATT
Statistics
Matches: 345, Mismatches: 18, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
401 341 0.99
402 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (401 bp):
AGTGTCGACACATATTATAGACCAATTCTCTCATAAAACCGGTATACTTGTACCGGTTAGATTGA
AAAATTACATATTACATTGTACTTTTGGTTTTCGATGTTTATAGGATCGACACTTTTTATATATG
GATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTAGACCAAAAATATCGACACAAACT
AAAAAAGTGTCGACACATTATTTAGACCTATTCTCTCATAAAACCGGTATACTTGCACCGATTAG
ATTGAAAAATTACATATTACATTATACTTTTGGGTTTCGATGTTTATAGGATCGACACTTTTTAT
ATATAGATCGACACTTTATGGTTGCACCCTGTTTGCCATTCATTCTGGACCAAAATTATCGACAC
AAAATAAAAAA
Found at i:7020963 original size:18 final size:18
Alignment explanation
Indices: 7020940--7021000 Score: 59
Period size: 19 Copynumber: 3.3 Consensus size: 18
7020930 TCTTATTCAT
*
7020940 AATTATATTCACATACAA
1 AATTATAATCACATACAA
**
7020958 AATTATAAATCGTATACAA
1 AATTAT-AATCACATACAA
**
7020977 AATTATAAATCTTATACAA
1 AATTAT-AATCACATACAA
7020996 AATTA
1 AATTA
7021001 ACCCTACATT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
18 6 0.16
19 32 0.84
ACGTcount: A:0.52, C:0.11, G:0.02, T:0.34
Consensus pattern (18 bp):
AATTATAATCACATACAA
Found at i:7020976 original size:19 final size:19
Alignment explanation
Indices: 7020952--7021000 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
7020942 TTATATTCAC
7020952 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
7020971 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCGT
7020990 ATACAAAATTA
1 ATACAAAATTA
7021001 ACCCTACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.55, C:0.10, G:0.02, T:0.33
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:7022832 original size:33 final size:33
Alignment explanation
Indices: 7022795--7022860 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
7022785 CATCTTAATA
*
7022795 TCACCCCTTAACACCCCAACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
* *
7022828 TCACCCCTCAACACCTCTACTTCTTTCACCACT
1 TCACCCCTCAACACCCCAACTTCTTTCACCACT
7022861 CCATCTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.23, C:0.48, G:0.00, T:0.29
Consensus pattern (33 bp):
TCACCCCTCAACACCCCAACTTCTTTCACCACT
Found at i:7022919 original size:21 final size:21
Alignment explanation
Indices: 7022894--7022958 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
7022884 CCCCTTATGC
* * *
7022894 CTCTCAAGTGTATCTTCTACT
1 CTCTCAAGTTTCTCTTCGACT
7022915 CTCTCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
*
7022936 CTATCAAGTTTCTCTTCGACT
1 CTCTCAAGTTTCTCTTCGACT
7022957 CT
1 CT
7022959 TGATTGTCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.17, C:0.31, G:0.09, T:0.43
Consensus pattern (21 bp):
CTCTCAAGTTTCTCTTCGACT
Found at i:7025204 original size:17 final size:18
Alignment explanation
Indices: 7025182--7025224 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
7025172 ATATATCCGG
7025182 TATCATTT-TACCGGTTT
1 TATCATTTATACCGGTTT
7025199 TATCATTTTGATACCGGTTT
1 TATCA-TTT-ATACCGGTTT
7025219 TATCAT
1 TATCAT
7025225 ATTTTTACCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 5 0.22
18 3 0.13
19 1 0.04
20 14 0.61
ACGTcount: A:0.21, C:0.16, G:0.12, T:0.51
Consensus pattern (18 bp):
TATCATTTATACCGGTTT
Found at i:7025242 original size:20 final size:19
Alignment explanation
Indices: 7025187--7025233 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
7025177 TCCGGTATCA
7025187 TTTTACCGGTTTTATCATT
1 TTTTACCGGTTTTATCATT
*
7025206 TTGATACCGGTTTTATCATAT
1 TT-TTACCGGTTTTATCAT-T
7025227 TTTTACC
1 TTTTACC
7025234 TGTTATATCG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (19 bp):
TTTTACCGGTTTTATCATT
Found at i:7026441 original size:42 final size:42
Alignment explanation
Indices: 7026382--7026680 Score: 236
Period size: 42 Copynumber: 7.1 Consensus size: 42
7026372 TGATTCTATT
*
7026382 TTTTTTCAATCTCACTTTTTACCTTTATAATTAAGCTCCTAG
1 TTTTTTCAATCTCACTTTTTACCTTTATAATTAAGCTCCTAA
* * * * *
7026424 TTTTTTCAATCTCACTTTCTACTTTTATGATTGAGGCCCCTAA
1 TTTTTTCAATCTCACTTTTTACCTTTATAATT-AAGCTCCTAA
* * * *
7026467 TTTTTT-AATCTCACTCTTTACCTTTATAATTGAGTTACTTAA
1 TTTTTTCAATCTCACTTTTTACCTTTATAATTAAGCT-CCTAA
* *
7026509 -ATTTTCAATCTCACTTTTTA-CTTATATAATTTAGGC-CCATAA
1 TTTTTTCAATCTCACTTTTTACCTT-TATAA-TTAAGCTCC-TAA
** * * * *
7026551 TGATTTCAATCTCATTTTTTACCTTTAAAATTGAGGCTACTAA
1 TTTTTTCAATCTCACTTTTTACCTTTATAATT-AAGCTCCTAA
* * * *
7026594 TTTTTT-AATCTTACTTTTTACATTTATAATTGAAG-TCCCAT
1 TTTTTTCAATCTCACTTTTTACCTTTATAATT-AAGCTCCTAA
* *
7026635 TTTTTTCAACCAT-ACTTTTTACTTTTATAATTTAAG-TCCTTAA
1 TTTTTTCAATC-TCACTTTTTACCTTTATAA-TTAAGCTCC-TAA
7026678 TTT
1 TTT
7026681 AATTATTTTT
Statistics
Matches: 203, Mismatches: 40, Indels: 27
0.75 0.15 0.10
Matches are distributed among these distances:
41 18 0.09
42 126 0.62
43 55 0.27
44 4 0.02
ACGTcount: A:0.26, C:0.18, G:0.06, T:0.50
Consensus pattern (42 bp):
TTTTTTCAATCTCACTTTTTACCTTTATAATTAAGCTCCTAA
Found at i:7026490 original size:84 final size:83
Alignment explanation
Indices: 7026382--7026674 Score: 263
Period size: 84 Copynumber: 3.5 Consensus size: 83
7026372 TGATTCTATT
*
7026382 TTTTTTCAATCTCACTTTTTACCTTTATAATTAAGCTCCTAGTTTTTTCAATCTCACTTTCTACT
1 TTTTTT-AATCTCACTTTTTACCTTTATAATTAAGCTCCTA-TTTTTTCAATCTCACTTTTTACT
* *
7026447 TTTATGATTGAGGCCCCTAA
64 TTTATAATTGAGGCCCATAA
* * * * **
7026467 TTTTTTAATCTCACTCTTTACCTTTATAATTGAGTTACTTAAATTTTCAATCTCACTTTTTACTT
1 TTTTTTAATCTCACTTTTTACCTTTATAATTAAGCT-CCTATTTTTTCAATCTCACTTTTTACTT
* *
7026532 ATATAATTTAGGCCCATAA
65 TTATAATTGAGGCCCATAA
* * * * * * *
7026551 TGATTTCAATCTCATTTTTTACCTTTAAAATTGAGGCTACTAATTTTTT-AATCTTACTTTTTAC
1 T-TTTTTAATCTCACTTTTTACCTTTATAATT-AAGCTCCT-ATTTTTTCAATCTCACTTTTTAC
* *
7026615 ATTTATAATTGAAGTCCCAT--
63 TTTTATAATTG-AGGCCCATAA
* *
7026635 TTTTTTCAACCAT-ACTTTTTACTTTTATAATTTAAG-TCCT
1 TTTTTT-AATC-TCACTTTTTACCTTTATAA-TTAAGCTCCT
7026675 TAATTTAATT
Statistics
Matches: 164, Mismatches: 36, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
83 6 0.04
84 84 0.51
85 60 0.37
86 14 0.09
ACGTcount: A:0.26, C:0.18, G:0.06, T:0.49
Consensus pattern (83 bp):
TTTTTTAATCTCACTTTTTACCTTTATAATTAAGCTCCTATTTTTTCAATCTCACTTTTTACTTT
TATAATTGAGGCCCATAA
Found at i:7026641 original size:127 final size:126
Alignment explanation
Indices: 7026334--7026674 Score: 334
Period size: 127 Copynumber: 2.7 Consensus size: 126
7026324 TTGAAGCATT
* * * * *
7026334 TAATTTTTTAATCCCTATTTTTTTAAATTTATAATTGATGATTCTATTTTTTTTCAATCTCACTT
1 TAATTTTTTAAT-CTTA-CTTTTTACATTTATAATTGAAG-TTCCA-TTTTTTTCAATCTCACTT
* ** * ** *
7026399 TTTACCTTTATAA-TTAAGCTCCTAGTTTTTTCAATCTCACTTTCTACTTTTATGATTGAGGCCC
62 TTTA-CTTTATAATTTAAGCTCCTAATGATTTCAATCTCACTTTCTACCTTTAAAATTGAGGCCA
7026463 C
126 C
* * * * *
7026464 TAATTTTTTAATCTCACTCTTTACCTTTATAATTG-AGTTAC-TTAAATTTTCAATCTCACTTTT
1 TAATTTTTTAATCTTACTTTTTACATTTATAATTGAAGTTCCATT--TTTTTCAATCTCACTTTT
* * * *
7026527 TACTTATATAATTTAGGC-CCATAATGATTTCAATCTCATTTTTTACCTTTAAAATTGAGGCTAC
64 TACTT-TATAATTTAAGCTCC-TAATGATTTCAATCTCACTTTCTACCTTTAAAATTGAGGCCAC
* *
7026591 TAATTTTTTAATCTTACTTTTTACATTTATAATTGAAGTCCCATTTTTTTCAACCAT-ACTTTTT
1 TAATTTTTTAATCTTACTTTTTACATTTATAATTGAAGTTCCATTTTTTTCAATC-TCACTTTTT
7026655 ACTTTTATAATTTAAG-TCCT
65 AC-TTTATAATTTAAGCTCCT
7026675 TAATTTAATT
Statistics
Matches: 172, Mismatches: 29, Indels: 24
0.76 0.13 0.11
Matches are distributed among these distances:
124 2 0.01
125 3 0.02
126 29 0.17
127 100 0.58
128 22 0.13
129 4 0.02
130 12 0.07
ACGTcount: A:0.27, C:0.17, G:0.06, T:0.51
Consensus pattern (126 bp):
TAATTTTTTAATCTTACTTTTTACATTTATAATTGAAGTTCCATTTTTTTCAATCTCACTTTTTA
CTTTATAATTTAAGCTCCTAATGATTTCAATCTCACTTTCTACCTTTAAAATTGAGGCCAC
Found at i:7035588 original size:16 final size:16
Alignment explanation
Indices: 7035568--7035614 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
7035558 TTTTATCTGC
7035568 TAAGAAACTTATCTA-
1 TAAGAAACTTATCTAG
**
7035583 TAAAGACTCTTATCTAG
1 T-AAGAAACTTATCTAG
*
7035600 TAAGAAACTAATCTA
1 TAAGAAACTTATCTA
7035615 ATTAGATAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
15 1 0.04
16 23 0.92
17 1 0.04
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.32
Consensus pattern (16 bp):
TAAGAAACTTATCTAG
Found at i:7035589 original size:32 final size:32
Alignment explanation
Indices: 7035553--7035614 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
7035543 GAAACCTTCT
* *
7035553 AAGACTTTTATCT-GCTAAGAAACTTATCTATA
1 AAGACTCTTATCTAG-TAAGAAACTAATCTATA
7035585 AAGACTCTTATCTAGTAAGAAACTAATCTA
1 AAGACTCTTATCTAGTAAGAAACTAATCTA
7035615 ATTAGATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34
Consensus pattern (32 bp):
AAGACTCTTATCTAGTAAGAAACTAATCTATA
Found at i:7044271 original size:133 final size:133
Alignment explanation
Indices: 7044033--7044294 Score: 524
Period size: 133 Copynumber: 2.0 Consensus size: 133
7044023 TTCTCTATAT
7044033 TTGAATAATAATTATTTGTTGCACATTGAATTGCATATGTACAAATAACTGAAACTAATAAAGAA
1 TTGAATAATAATTATTTGTTGCACATTGAATTGCATATGTACAAATAACTGAAACTAATAAAGAA
7044098 GTAAATTTGTATTATCATGTAAAGTTTTCATACTTTCAAAATACATCAGATTAATATAAAGTTGC
66 GTAAATTTGTATTATCATGTAAAGTTTTCATACTTTCAAAATACATCAGATTAATATAAAGTTGC
7044163 ACA
131 ACA
7044166 TTGAATAATAATTATTTGTTGCACATTGAATTGCATATGTACAAATAACTGAAACTAATAAAGAA
1 TTGAATAATAATTATTTGTTGCACATTGAATTGCATATGTACAAATAACTGAAACTAATAAAGAA
7044231 GTAAATTTGTATTATCATGTAAAGTTTTCATACTTTCAAAATACATCAGATTAATATAAAGTTG
66 GTAAATTTGTATTATCATGTAAAGTTTTCATACTTTCAAAATACATCAGATTAATATAAAGTTG
7044295 TGTTTTAAAT
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 129 1.00
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.37
Consensus pattern (133 bp):
TTGAATAATAATTATTTGTTGCACATTGAATTGCATATGTACAAATAACTGAAACTAATAAAGAA
GTAAATTTGTATTATCATGTAAAGTTTTCATACTTTCAAAATACATCAGATTAATATAAAGTTGC
ACA
Found at i:7045682 original size:20 final size:21
Alignment explanation
Indices: 7045642--7045683 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
7045632 TCATGTGAGA
*
7045642 GACAGAATAAAAAGGAGAAATT
1 GACAGAAGAAAAA-GAGAAATT
7045664 GACAGAAGAAAAA-AGAAATT
1 GACAGAAGAAAAAGAGAAATT
7045684 TTTTAATCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
22 12 0.63
ACGTcount: A:0.62, C:0.05, G:0.21, T:0.12
Consensus pattern (21 bp):
GACAGAAGAAAAAGAGAAATT
Found at i:7057369 original size:29 final size:29
Alignment explanation
Indices: 7057327--7057386 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
7057317 TTCCACAGCC
*
7057327 TTCCACCAACTCAGTCTATCTTTGAACAT
1 TTCCACCAACTCAGTCTACCTTTGAACAT
7057356 TTCCACCAACTCAGTCTACCTTTGAACAT
1 TTCCACCAACTCAGTCTACCTTTGAACAT
7057385 TT
1 TT
7057387 TAATAGACTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.35
Consensus pattern (29 bp):
TTCCACCAACTCAGTCTACCTTTGAACAT
Found at i:7057897 original size:51 final size:51
Alignment explanation
Indices: 7057821--7057917 Score: 185
Period size: 51 Copynumber: 1.9 Consensus size: 51
7057811 ACCACATGCC
*
7057821 TGAGTACACTGCAGTAAACTCATAGCACACTGTGAGCTTGTGAACTTAGTT
1 TGAGTACACTGCAGTAAACTCATAGCACACTGTGAGCTTGTAAACTTAGTT
7057872 TGAGTACACTGCAGTAAACTCATAGCACACTGTGAGCTTGTAAACT
1 TGAGTACACTGCAGTAAACTCATAGCACACTGTGAGCTTGTAAACT
7057918 CATAGCACAC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (51 bp):
TGAGTACACTGCAGTAAACTCATAGCACACTGTGAGCTTGTAAACTTAGTT
Found at i:7057914 original size:26 final size:26
Alignment explanation
Indices: 7057885--7057943 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
7057875 GTACACTGCA
7057885 GTAAACTCATAGCACACTGTGAGCTT
1 GTAAACTCATAGCACACTGTGAGCTT
7057911 GTAAACTCATAGCACACTGTGAGCTT
1 GTAAACTCATAGCACACTGTGAGCTT
*
7057937 GTGAACT
1 GTAAACT
7057944 TAGTTGCTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
GTAAACTCATAGCACACTGTGAGCTT
Found at i:7059687 original size:27 final size:27
Alignment explanation
Indices: 7059649--7059710 Score: 124
Period size: 27 Copynumber: 2.3 Consensus size: 27
7059639 TGAAGATCTT
7059649 AAGTGATGCTATAGAGTTTCAAGTTCA
1 AAGTGATGCTATAGAGTTTCAAGTTCA
7059676 AAGTGATGCTATAGAGTTTCAAGTTCA
1 AAGTGATGCTATAGAGTTTCAAGTTCA
7059703 AAGTGATG
1 AAGTGATG
7059711 ATGGCAGTGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32
Consensus pattern (27 bp):
AAGTGATGCTATAGAGTTTCAAGTTCA
Found at i:7059991 original size:2 final size:2
Alignment explanation
Indices: 7059984--7060017 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7059974 TAAAAAGAGC
7059984 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7060018 TATTTTGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7063475 original size:36 final size:37
Alignment explanation
Indices: 7063418--7063518 Score: 116
Period size: 36 Copynumber: 2.8 Consensus size: 37
7063408 TTTCGTCCTA
7063418 CTAGGATTCAAACTCTCAAAAATAGGATAGAATTATG
1 CTAGGATTCAAACTCTCAAAAATAGGATAGAATTATG
* *
7063455 CTAGGATTC-AACTC-CTAAAAATATGATAGAATTTTG
1 CTAGGATTCAAACTCTC-AAAAATAGGATAGAATTATG
* * * * *
7063491 CTATGTTTTAAACTCTTAAAGATAGGAT
1 CTAGGATTCAAACTCTCAAAAATAGGAT
7063519 CCACAAGCAC
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
35 1 0.02
36 29 0.55
37 23 0.43
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.33
Consensus pattern (37 bp):
CTAGGATTCAAACTCTCAAAAATAGGATAGAATTATG
Found at i:7066179 original size:27 final size:26
Alignment explanation
Indices: 7066148--7066213 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
7066138 TAATCTTTAG
7066148 TTCTTTGAATATTAAATGAATTA-AGGA
1 TTCTTTGAATATTAAA-GAATTATA-GA
* *
7066175 TTCTTTTAATTCTTAAAGAATTATAGA
1 TTCTTTGAA-TATTAAAGAATTATAGA
7066202 TT-TTTGACATAT
1 TTCTTTGA-ATAT
7066214 GACAAGATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
26 6 0.19
27 19 0.59
28 7 0.22
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.47
Consensus pattern (26 bp):
TTCTTTGAATATTAAAGAATTATAGA
Found at i:7066961 original size:20 final size:21
Alignment explanation
Indices: 7066924--7066984 Score: 74
Period size: 20 Copynumber: 3.0 Consensus size: 21
7066914 CAAAAAGAAA
7066924 AAAGAA-AAGAAGCAAAAAAGG
1 AAAGAACAAGAA-CAAAAAAGG
7066945 AAA-AACAAGAACAAAAAA-G
1 AAAGAACAAGAACAAAAAAGG
* *
7066964 AAAGAACAAAAATAAAAAAGG
1 AAAGAACAAGAACAAAAAAGG
7066985 GAACAAAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 4 0.11
20 22 0.63
21 9 0.26
ACGTcount: A:0.75, C:0.07, G:0.16, T:0.02
Consensus pattern (21 bp):
AAAGAACAAGAACAAAAAAGG
Found at i:7068580 original size:37 final size:36
Alignment explanation
Indices: 7068486--7068590 Score: 149
Period size: 36 Copynumber: 2.9 Consensus size: 36
7068476 GTGCTCACCA
7068486 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAACT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAACT
*
7068522 TTGTCTCTCTTGAGACAGTTTCCCTTGAAGTA-AAATT
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAA--ACAAACT
* * *
7068559 TTTTCTCCCTTGAGACAGTTTCTCTTGAAACA
1 TTGTCTCTCTTGAGACAGTTTCCCTTGAAACA
7068591 TAAACATTGA
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
35 1 0.02
36 30 0.48
37 30 0.48
38 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.14, T:0.39
Consensus pattern (36 bp):
TTGTCTCTCTTGAGACAGTTTCCCTTGAAACAAACT
Found at i:7068680 original size:102 final size:102
Alignment explanation
Indices: 7068504--7068757 Score: 382
Period size: 102 Copynumber: 2.5 Consensus size: 102
7068494 CTTGAGACAG
** * * ** *** *
7068504 TTTCCCTTGAAACAAACTTTGTCTCTCTTGAGACAGTTTCCCTTGAAGTAAAATTTTTTCTCCCT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTCCGTCTCCAT
7068569 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
66 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
*
7068606 TTTCCCTTGAAATGAGTTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTCCGTCTCCAT
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTCCGTCTCCAT
*
7068671 TGAGACAGTTTCTCTTGAAACATAAATATTGAAAACA
66 TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
* *
7068708 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGATAGTTTCTCTTGAAACA
1 TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACA
7068758 TAAACATTGA
Statistics
Matches: 137, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
102 137 1.00
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.37
Consensus pattern (102 bp):
TTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTCCGTCTCCAT
TGAGACAGTTTCTCTTGAAACATAAACATTGAAAACA
Found at i:7068747 original size:65 final size:65
Alignment explanation
Indices: 7068642--7068826 Score: 293
Period size: 65 Copynumber: 2.8 Consensus size: 65
7068632 CTTGAGATAG
** *
7068642 TTTCCCTTGAAACAAAATTCCGTCTC-CATTGAGACAGTTTCTCTTGAAACATAAATATTGAAAA
1 TTTCCCTTGAAA-TGAATTTCGTCTCTC-TTGAGACAGTTTCTCTTGAAACATAAATATTGAAAA
7068706 CA
64 CA
* *
7068708 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGATAGTTTCTCTTGAAACATAAACATTGAAAACA
1 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAATATTGAAAACA
7068773 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACA-AAAT
1 TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAAT
7068827 TTTGTCTCCC
Statistics
Matches: 111, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
64 3 0.03
65 95 0.86
66 13 0.12
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (65 bp):
TTTCCCTTGAAATGAATTTCGTCTCTCTTGAGACAGTTTCTCTTGAAACATAAATATTGAAAACA
Found at i:7069000 original size:37 final size:37
Alignment explanation
Indices: 7068930--7069001 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 37
7068920 TGGAACTAAG
* * **
7068930 TTTTGTCTCTCTTGAGACAGTTTTTCTTAAAACAAAA
1 TTTTGTCTCCCTTAAGACAGTTTCCCTTAAAACAAAA
* *
7068967 TTTTGTCTCCCTTAAGACCGTTTCCCTTGAAACAA
1 TTTTGTCTCCCTTAAGACAGTTTCCCTTAAAACAA
7069002 CAAATATCTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 29 1.00
ACGTcount: A:0.26, C:0.22, G:0.11, T:0.40
Consensus pattern (37 bp):
TTTTGTCTCCCTTAAGACAGTTTCCCTTAAAACAAAA
Found at i:7069542 original size:109 final size:109
Alignment explanation
Indices: 7069352--7069823 Score: 632
Period size: 109 Copynumber: 4.4 Consensus size: 109
7069342 TAGCTAGAGT
* * * * *
7069352 CAAGTTCAACTTCACAACGAAGGGACGGTTGGTTGCCAAC-AACAATTTCCCAATTTCGGAACCG
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACGAACAACTTCCCAATTTCAGAACCA
*
7069416 ATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGATAACA
66 ATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGACAACA
* *
7069460 CAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACGAACAACTTCCCAATTCCAGAACCA
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACGAACAACTTCCCAATTTCAGAACCA
7069525 ATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGACAACA
66 ATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGACAACA
** * **
7069569 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACGAACAACTTTTCAGTTTCA-TCCGC
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACGAACAACTTCCCAATTTCAGAAC-C
* * *
7069633 GATTTCAACTCCACGACGGAGGATATCGTGCCACTCGAGACAACA
65 AATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGACAACA
* * ** * * *
7069678 CAAGTTCAACTTCACAACGAAGGGACAGCTGGTTGTCAACAAACATTTTTCAAATTTCAGAGCCA
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACGAACAACTTCCCAATTTCAGAACCA
* * * *
7069743 ATTTCAACTTCAC-AGCGAAGGATAT--TG-GACTCGAGACAACA
66 ATTTCAACTCCACGA-CGGAGGATATCGTGCTACCCGAGACAACA
*
7069784 CAAGTTCAACTTCACAACGAAGGGACGGCTGATTGTCAAC
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC
7069824 AAGATTTCGT
Statistics
Matches: 327, Mismatches: 33, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
106 51 0.16
107 2 0.01
108 39 0.12
109 234 0.72
110 1 0.00
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.21
Consensus pattern (109 bp):
CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACGAACAACTTCCCAATTTCAGAACCA
ATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGACAACA
Found at i:7069820 original size:106 final size:106
Alignment explanation
Indices: 7069352--7069981 Score: 608
Period size: 109 Copynumber: 5.9 Consensus size: 106
7069342 TAGCTAGAGT
* * * * *
7069352 CAAGTTCAACTTCACAACGAAGGGACGGTTGGTTGCCAACAACAATTTCCCAATTTCGGAACCGA
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAC-ATTTTCCAATTTCAGAACCAA
* * *
7069417 TTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGATAACA
65 TTTCAACTCCACGACGGAGGATATC-TGCGACTCGAGACAACA
* * * *
7069460 CAAGTTCAACTTCACAACGAAGGGACGACTGGTTGTCAACGAACAACTTCCCAATTCCAGAACCA
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC-AAC-ATTTTCCAATTTCAGAACCA
* *
7069525 ATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGACAACA
64 ATTTCAACTCCACGACGGAGGATATC-TGCGACTCGAGACAACA
* **
7069569 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACGAACAACTTTT-CAGTTTCA-TCCG
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC-AAC-A-TTTTCCAATTTCAGAAC-
* *
7069632 CGATTTCAACTCCACGACGGAGGATATCGTGCCACTCGAGACAACA
62 CAATTTCAACTCCACGACGGAGGATATC-TGCGACTCGAGACAACA
* * *
7069678 CAAGTTCAACTTCACAACGAAGGGACAGCTGGTTGTCAACAAACATTTTTCAAATTTCAGAGCCA
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC-AACA-TTTTCCAATTTCAGAACCA
* *
7069743 ATTTCAACTTCAC-AGCGAAGGATAT-TG-GACTCGAGACAACA
64 ATTTCAACTCCACGA-CGGAGGATATCTGCGACTCGAGACAACA
* * * **
7069784 CAAGTTCAACTTCACAACGAAGGGACGGCTGATTGTCAACAAGA-TTT-C--GTTCAGAGTCAAT
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAACATTTTCCAATTTCAGAACCAAT
* * *
7069845 TTCAACTTCAC-A-GTGAAGGATAT-T-AGACTCGAGACAGCA
66 TTCAACTCCACGACG-G-AGGATATCTGCGACTCGAGACAACA
* * * ** * ***
7069884 CAAGCTCAACTTCACAGCGAAGGGGCGGCTGACTGTCAACAAACAATTTCCCGGTTCTAGAACCA
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAAC-AACATTTTCCAATTTC-AGAACCA
*
7069949 ATTTCAACTTCAC-AGCGGAGGATAT-TG-GACTCG
64 ATTTCAACTCCACGA-CGGAGGATATCTGCGACTCG
7069982 GAACAATATT
Statistics
Matches: 460, Mismatches: 44, Indels: 38
0.85 0.08 0.07
Matches are distributed among these distances:
98 1 0.00
100 80 0.17
101 3 0.01
102 3 0.01
103 4 0.01
105 7 0.02
106 84 0.18
107 3 0.01
108 45 0.10
109 227 0.49
110 3 0.01
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (106 bp):
CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAACATTTTCCAATTTCAGAACCAAT
TTCAACTCCACGACGGAGGATATCTGCGACTCGAGACAACA
Found at i:7069954 original size:206 final size:212
Alignment explanation
Indices: 7069352--7069981 Score: 676
Period size: 218 Copynumber: 3.0 Consensus size: 212
7069342 TAGCTAGAGT
* * * * *** *
7069352 CAAGTTCAACTTCACAACGAAGGGACGGTTGGTTGCCAAC-AACAA-TTTCCCAATTTCGGAACC
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGATTGTCAACGAACAACTTT--CAGTTTCATCAGC
* * *
7069415 GATTTCAACTCCACGACGGAGGATATCGTGCTACCCGAGATAACACAAGTTCAACTTCACAACGA
64 AATTTCAACTCCACGACGGAGGATATC-TGC-ACTCGAGACAACACAAGTTCAACTTCACAACGA
* * * * *
7069480 AGGGACGACTGGTTGTCAACGAACAACTTCCCAATTCCAGAACCAATTTCAACTCCAC-GACGGA
127 AGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTCTAGAACCAATTTCAACTTCACAG-CGGA
* *
7069544 GGATATCGTGCTACCCGAGACAACA
191 GGATAT--TG-GACTCGAGACAACA
* * *
7069569 CAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACGAACAACTTTTCAGTTTCATCCGCG
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGATTGTCAACGAACAAC-TTTCAGTTTCATCAGCA
7069634 ATTTCAACTCCACGACGGAGGATATCGTGCCACTCGAGACAACACAAGTTCAACTTCACAACGAA
65 ATTTCAACTCCACGACGGAGGATATC-TG-CACTCGAGACAACACAAGTTCAACTTCACAACGAA
* * * * * *
7069699 GGGACAGCTGGTTGTCAACAAACATTTTTCAAATT-TCAGAGCCAATTTCAACTTCACAGCGAAG
128 GGGACGGCTGGTTGTCAACAAACAATTTCCCAATTCT-AGAACCAATTTCAACTTCACAGCGGAG
7069763 GATATTGGACTCGAGACAACA
192 GATATTGGACTCGAGACAACA
* *
7069784 CAAGTTCAACTTCACAACGAAGGGACGGCTGATTGTCAAC-AA-GA-TTTC-G-TTCA-GAGTCA
1 CAAGTTCAACTTCACAACGAAGGGACGGCTGATTGTCAACGAACAACTTTCAGTTTCATCAG-CA
* * * *
7069843 ATTTCAACTTCAC-A-GTGAAGGATAT-TAG-ACTCGAGACAGCACAAGCTCAACTTCACAGCGA
65 ATTTCAACTCCACGACG-G-AGGATATCT-GCACTCGAGACAACACAAGTTCAACTTCACAACGA
* ** **
7069904 AGGGGCGGCTGACTGTCAACAAACAATTTCCCGGTTCTAGAACCAATTTCAACTTCACAGCGGAG
127 AGGGACGGCTGGTTGTCAACAAACAATTTCCCAATTCTAGAACCAATTTCAACTTCACAGCGGAG
7069969 GATATTGGACTCG
192 GATATTGGACTCG
7069982 GAACAATATT
Statistics
Matches: 359, Mismatches: 43, Indels: 33
0.83 0.10 0.08
Matches are distributed among these distances:
206 95 0.26
207 3 0.01
208 4 0.01
209 24 0.07
210 1 0.00
211 4 0.01
213 1 0.00
214 2 0.01
215 51 0.14
216 2 0.01
217 38 0.11
218 129 0.36
219 2 0.01
220 3 0.01
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (212 bp):
CAAGTTCAACTTCACAACGAAGGGACGGCTGATTGTCAACGAACAACTTTCAGTTTCATCAGCAA
TTTCAACTCCACGACGGAGGATATCTGCACTCGAGACAACACAAGTTCAACTTCACAACGAAGGG
ACGGCTGGTTGTCAACAAACAATTTCCCAATTCTAGAACCAATTTCAACTTCACAGCGGAGGATA
TTGGACTCGAGACAACA
Found at i:7070499 original size:36 final size:37
Alignment explanation
Indices: 7070442--7070542 Score: 116
Period size: 36 Copynumber: 2.8 Consensus size: 37
7070432 TTTCGTCCTA
7070442 CTAGGATTCAAACTCTCAAAAATAGGATAGAATTATG
1 CTAGGATTCAAACTCTCAAAAATAGGATAGAATTATG
* *
7070479 CTAGGATTC-AACTC-CTAAAAATATGATAGAATTTTG
1 CTAGGATTCAAACTCTC-AAAAATAGGATAGAATTATG
* * * * *
7070515 CTATGTTTTAAACTCTTAAAGATAGGAT
1 CTAGGATTCAAACTCTCAAAAATAGGAT
7070543 CCACAAGCAC
Statistics
Matches: 53, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
35 1 0.02
36 29 0.55
37 23 0.43
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.33
Consensus pattern (37 bp):
CTAGGATTCAAACTCTCAAAAATAGGATAGAATTATG
Found at i:7073435 original size:20 final size:21
Alignment explanation
Indices: 7073410--7073451 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
7073400 CCAACTTACA
7073410 ATGCATTATG-AACCATTATT
1 ATGCATTATGCAACCATTATT
*
7073430 ATGCATTATGCAACTATTATT
1 ATGCATTATGCAACCATTATT
7073451 A
1 A
7073452 GTTGCATGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (21 bp):
ATGCATTATGCAACCATTATT
Found at i:7078979 original size:2 final size:2
Alignment explanation
Indices: 7078972--7079000 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7078962 ACCCTACCTC
7078972 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7079001 AAGATGTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7082962 original size:14 final size:14
Alignment explanation
Indices: 7082943--7082981 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
7082933 ACCATTAATA
7082943 AACGGTTAATCGTT
1 AACGGTTAATCGTT
7082957 AACGGTTAATCGTT
1 AACGGTTAATCGTT
7082971 AACGGTTAATC
1 AACGGTTAATC
7082982 ATTATTAACG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (14 bp):
AACGGTTAATCGTT
Found at i:7083290 original size:2 final size:2
Alignment explanation
Indices: 7083283--7083337 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
7083273 ATTTTATTAA
7083283 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7083325 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
7083338 AATAATAGAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7094350 original size:60 final size:59
Alignment explanation
Indices: 7094246--7094400 Score: 149
Period size: 60 Copynumber: 2.6 Consensus size: 59
7094236 AGCACCTTGG
* *
7094246 GTCCATAAGGACTTACCCTA-GC-CAAAGTATAA-GAGTCATCTGAGGAGAGT-GCCCTAAT
1 GTCCATAAGGACTTACCCAATGCACAAAGCA-AATGAGTCATCTGAGGAGAGTAGCCC--AT
** * * *
7094304 GTTTATATGGATTTACCCAATGCACAAAGCAAATGAGTCA-CTTGAGGGGAGTACGCCCAT
1 GTCCATAAGGACTTACCCAATGCACAAAGCAAATGAGTCATC-TGAGGAGAGTA-GCCCAT
* *
7094364 GTCCATAAGGACTTACCCAATGCATAAAGTAAATGAG
1 GTCCATAAGGACTTACCCAATGCACAAAGCAAATGAG
7094401 CCACCTAAGA
Statistics
Matches: 78, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
58 15 0.19
59 5 0.06
60 54 0.69
62 4 0.05
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.23
Consensus pattern (59 bp):
GTCCATAAGGACTTACCCAATGCACAAAGCAAATGAGTCATCTGAGGAGAGTAGCCCAT
Found at i:7094415 original size:60 final size:60
Alignment explanation
Indices: 7094316--7094440 Score: 151
Period size: 60 Copynumber: 2.1 Consensus size: 60
7094306 TTATATGGAT
* * * * *
7094316 TTACCCAATGCACAAAGCAAATGAGTCACTTGAGGGGAGTACGCCCATGTCCATAAGGAC
1 TTACCCAATGCACAAAGCAAATGAGCCACCTAAGAGGAGTACGCCCAGGTCCATAAGGAC
* * * * * *
7094376 TTACCCAATGCATAAAGTAAATGAGCCACCTAAGAGGAGTTCTCCTAGGTCCATAAGGTC
1 TTACCCAATGCACAAAGCAAATGAGCCACCTAAGAGGAGTACGCCCAGGTCCATAAGGAC
7094436 TTACC
1 TTACC
7094441 ACTAAGCCCA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.22
Consensus pattern (60 bp):
TTACCCAATGCACAAAGCAAATGAGCCACCTAAGAGGAGTACGCCCAGGTCCATAAGGAC
Found at i:7101218 original size:44 final size:47
Alignment explanation
Indices: 7101152--7101249 Score: 157
Period size: 44 Copynumber: 2.1 Consensus size: 47
7101142 TTATTTTCGT
7101152 TTTTTCGAATAAATGCATGCGAACTAGATATCATGCGGTTAGG-TTTA
1 TTTTT-GAATAAATGCATGCGAACTAGATATCATGCGGTTAGGATTTA
*
7101199 TTTTTGAAT-AA-GCATGCGAATTAGATATCATGCGGTTAGGATTTA
1 TTTTTGAATAAATGCATGCGAACTAGATATCATGCGGTTAGGATTTA
7101244 TTTTTG
1 TTTTTG
7101250 TGAATAACAA
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
44 28 0.57
45 12 0.24
46 4 0.08
47 5 0.10
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (47 bp):
TTTTTGAATAAATGCATGCGAACTAGATATCATGCGGTTAGGATTTA
Found at i:7107482 original size:106 final size:106
Alignment explanation
Indices: 7107297--7107515 Score: 438
Period size: 106 Copynumber: 2.1 Consensus size: 106
7107287 TTCCCATTCA
7107297 TTTCATTCATTCATTCATTGTTGTATATATGTATGTATTTATTTATTTCTATTTATTTATATGGG
1 TTTCATTCATTCATTCATTGTTGTATATATGTATGTATTTATTTATTTCTATTTATTTATATGGG
7107362 AAAAGATCCTCCCATATGTATATATGTATATATATCTTCCC
66 AAAAGATCCTCCCATATGTATATATGTATATATATCTTCCC
7107403 TTTCATTCATTCATTCATTGTTGTATATATGTATGTATTTATTTATTTCTATTTATTTATATGGG
1 TTTCATTCATTCATTCATTGTTGTATATATGTATGTATTTATTTATTTCTATTTATTTATATGGG
7107468 AAAAGATCCTCCCATATGTATATATGTATATATATCTTCCC
66 AAAAGATCCTCCCATATGTATATATGTATATATATCTTCCC
7107509 TTTCATT
1 TTTCATT
7107516 ATTTTTTTCA
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 113 1.00
ACGTcount: A:0.27, C:0.13, G:0.09, T:0.51
Consensus pattern (106 bp):
TTTCATTCATTCATTCATTGTTGTATATATGTATGTATTTATTTATTTCTATTTATTTATATGGG
AAAAGATCCTCCCATATGTATATATGTATATATATCTTCCC
Found at i:7110996 original size:7 final size:7
Alignment explanation
Indices: 7110962--7111083 Score: 50
Period size: 7 Copynumber: 15.6 Consensus size: 7
7110952 TATTTGCTTG
7110962 AAGAAGAA
1 AAGAA-AA
7110970 AAGGAAAA
1 AA-GAAAA
7110978 AA-AAAA
1 AAGAAAA
*
7110984 TGAGAAAA
1 -AAGAAAA
7110992 AAGAAAA
1 AAGAAAA
*
7110999 ATGATGGAAA
1 A--A-GAAAA
*
7111009 ACGAAAA
1 AAGAAAA
7111016 GGAA-AAAA
1 --AAGAAAA
7111024 AAGAAAA
1 AAGAAAA
*
7111031 AATGGAAAGGG
1 AA--GAAA--A
7111042 AAGAAAA
1 AAGAAAA
7111049 AATGAAAA
1 AA-GAAAA
*
7111057 ATGAAAA
1 AAGAAAA
7111064 AAGAGAAA
1 AAGA-AAA
7111072 AATGAAAA
1 AA-GAAAA
7111080 AAGA
1 AAGA
7111084 GAAATAAAAG
Statistics
Matches: 88, Mismatches: 10, Indels: 33
0.67 0.08 0.25
Matches are distributed among these distances:
6 6 0.07
7 30 0.34
8 30 0.34
9 15 0.17
10 5 0.06
11 2 0.02
ACGTcount: A:0.72, C:0.01, G:0.21, T:0.06
Consensus pattern (7 bp):
AAGAAAA
Found at i:7110998 original size:16 final size:16
Alignment explanation
Indices: 7110974--7111087 Score: 67
Period size: 16 Copynumber: 7.1 Consensus size: 16
7110964 GAAGAAAAGG
7110974 AAAAA-AAAAATGAGA
1 AAAAAGAAAAATGAGA
*
7110989 AAAAAGAAAAATGATGG
1 AAAAAGAAAAATGA-GA
* * *
7111006 AAAACG-AAAAGGAAA
1 AAAAAGAAAAATGAGA
7111021 AAAAAGAAAAAATG-GA
1 AAAAAG-AAAAATGAGA
*
7111037 AAGGGAAGAAAAA--ATGA
1 AA--AAAGAAAAATGA-GA
* *
7111054 AAAATGAAAAAAGAGA
1 AAAAAGAAAAATGAGA
* *
7111070 AAAATGAAAAAAGAGA
1 AAAAAGAAAAATGAGA
7111086 AA
1 AA
7111088 TAAAAGGAGG
Statistics
Matches: 78, Mismatches: 11, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
15 17 0.22
16 37 0.47
17 21 0.27
18 3 0.04
ACGTcount: A:0.73, C:0.01, G:0.20, T:0.06
Consensus pattern (16 bp):
AAAAAGAAAAATGAGA
Found at i:7111009 original size:17 final size:16
Alignment explanation
Indices: 7110971--7111015 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
7110961 GAAGAAGAAA
7110971 AGGAAAAA-AAAAATG
1 AGGAAAAAGAAAAATG
*
7110986 AGAAAAAAGAAAAATG
1 AGGAAAAAGAAAAATG
*
7111002 ATGGAAAACGAAAA
1 A-GGAAAAAGAAAA
7111016 GGAAAAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 7 0.28
16 8 0.32
17 10 0.40
ACGTcount: A:0.71, C:0.02, G:0.20, T:0.07
Consensus pattern (16 bp):
AGGAAAAAGAAAAATG
Found at i:7111036 original size:30 final size:30
Alignment explanation
Indices: 7110962--7111038 Score: 84
Period size: 32 Copynumber: 2.5 Consensus size: 30
7110952 TATTTGCTTG
* *
7110962 AAGAAGAAAA-GGAAAAAAAAAATGAGAAAA
1 AAGAA-AAAATGGAAAAAAAAAAGGAAAAAA
**
7110992 AAGAAAAATGATGGAAAACGAAAAGGAAAAAA
1 AAGAAAAA--ATGGAAAAAAAAAAGGAAAAAA
7111024 AAGAAAAAATGGAAA
1 AAGAAAAAATGGAAA
7111039 GGGAAGAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
29 3 0.08
30 12 0.30
31 1 0.03
32 24 0.60
ACGTcount: A:0.73, C:0.01, G:0.21, T:0.05
Consensus pattern (30 bp):
AAGAAAAAATGGAAAAAAAAAAGGAAAAAA
Found at i:7111038 original size:24 final size:24
Alignment explanation
Indices: 7111011--7111081 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 24
7111001 GATGGAAAAC
7111011 GAAAAGGAAAAAAAAGAAAAAATG
1 GAAAAGGAAAAAAAAGAAAAAATG
*
7111035 GAAAGGGAAGAAAAAATG-AAAAATG
1 GAAAAGGAA-AAAAAA-GAAAAAATG
* * * *
7111060 AAAAAAGAGAAAAATGAAAAAA
1 GAAAAGGAAAAAAAAGAAAAAA
7111082 GAGAAATAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
23 1 0.03
24 18 0.47
25 18 0.47
26 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.21, T:0.06
Consensus pattern (24 bp):
GAAAAGGAAAAAAAAGAAAAAATG
Found at i:7112479 original size:49 final size:51
Alignment explanation
Indices: 7112367--7113022 Score: 962
Period size: 49 Copynumber: 13.0 Consensus size: 51
7112357 TAGCAAGTTC
7112367 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
*
7112418 GTTCGTTGAAGA-TGAGTCCTATACTCTCTGAATG-ATATGGAGCGGACAA
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
* *
7112467 GTTCATTGAAGATTGAGTCCTATA--CTCTGAAGGAATAGGGAGCGGACAA
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
7112516 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATG-ATAGGGAGCGGACAA
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
7112566 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAG-GGACAA
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
*
7112616 GTTCGTTGAAGATTGAGTCCTATA--CTCTGAAGGAATAGGGAGCGGACAA
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
7112665 GTTCGTTGAAGATTGAGTCCTATA--CTCTGAATGAATAGGGAGCGGACAA
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
7112714 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
7112765 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
*
7112816 GTTCATTGAAGATTGAGTCCTATACTCTCTGAATGAATA-GGAGCGGACAA
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
* **
7112866 GTTCGTTGAAGATTGAGTCCTATAC-C-CTGAAAGAATAGGGAGCGGACCT
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
** * * * * **
7112915 GTTTATTGAAGATTTTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGTGGACCC
1 GTTCGTTGAAGA---TT-GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
** * *
7112970 GTTTATTGAAGATTGTTCAAGT-CTATACTCTCTGAATGAATAGAGAGCAGACA
1 GTTCGTTGAAGATTG----AGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
7113023 CATTTTATGA
Statistics
Matches: 562, Mismatches: 24, Indels: 35
0.90 0.04 0.06
Matches are distributed among these distances:
48 35 0.06
49 160 0.28
50 148 0.26
51 143 0.25
52 4 0.01
53 10 0.02
54 28 0.05
55 34 0.06
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (51 bp):
GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAA
Found at i:7112637 original size:149 final size:151
Alignment explanation
Indices: 7112367--7113022 Score: 972
Period size: 149 Copynumber: 4.3 Consensus size: 151
7112357 TAGCAAGTTC
7112367 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGA-T
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATT
* *
7112431 GAGTCCTATACTCTCTGAATG-ATATGGAGCGGACAAGTTCATTGAAGATTGAGTCCTATACTCT
66 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTCT
7112495 GAAGGAATAGGGAGCGGACAA
131 GAAGGAATAGGGAGCGGACAA
7112516 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATG-ATAGGGAGCGGACAAGTTCGTTGAAGATT
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATT
7112580 GAGTCCTATACTCTCTGAATGAATAGGGAG-GGACAAGTTCGTTGAAGATTGAGTCCTATACTCT
66 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTCT
7112644 GAAGGAATAGGGAGCGGACAA
131 GAAGGAATAGGGAGCGGACAA
7112665 GTTCGTTGAAGATTGAGTCCTATA--CTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATT
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATT
7112728 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTCT
66 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATA--CT
*
7112793 CTGAATGAATAGGGAGCGGACAA
129 CTGAAGGAATAGGGAGCGGACAA
*
7112816 GTTCATTGAAGATTGAGTCCTATACTCTCTGAATGAATA-GGAGCGGACAAGTTCGTTGAAGATT
1 GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATT
* ** ** *
7112880 GAGTCCTATAC-C-CTGAAAGAATAGGGAGCGGACCTGTTTATTGAAGATTTTTCGAGTTCTATA
66 GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGA---TT-GAGTCCTATA
* * **
7112943 CTCTCTGAAGGAATAGAGAGTGGACCC
127 --CTCTGAAGGAATAGGGAGCGGACAA
** * *
7112970 GTTTATTGAAGATTGTTCAAGT-CTATACTCTCTGAATGAATAGAGAGCAGACA
1 GTTCGTTGAAGATTG----AGTCCTATACTCTCTGAATGAATAGGGAGCGGACA
7113023 CATTTTATGA
Statistics
Matches: 472, Mismatches: 18, Indels: 25
0.92 0.03 0.05
Matches are distributed among these distances:
147 9 0.02
148 86 0.18
149 165 0.35
150 37 0.08
151 48 0.10
152 36 0.08
153 15 0.03
154 45 0.10
157 20 0.04
158 11 0.02
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (151 bp):
GTTCGTTGAAGATTGAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATT
GAGTCCTATACTCTCTGAATGAATAGGGAGCGGACAAGTTCGTTGAAGATTGAGTCCTATACTCT
GAAGGAATAGGGAGCGGACAA
Found at i:7113088 original size:54 final size:54
Alignment explanation
Indices: 7112728--7113091 Score: 184
Period size: 51 Copynumber: 6.9 Consensus size: 54
7112718 GTTGAAGATT
* * * * *
7112728 GAGTCCTATACTCTCTGAATGAATAGGGAGC-GGACAAGTTCGTTGAAGA---TT-
1 GAGTCTTATACTCTCTGAAGGAATAGAGAGCAGG-CACGTT-TTTGAAGATTGTTC
* * * * *
7112779 GAGTCCTATACTCTCTGAATGAATAGGGAGC-GGACAAGTTCATTGAAGA---TT-
1 GAGTCTTATACTCTCTGAAGGAATAGAGAGCAGG-CACGTT-TTTGAAGATTGTTC
* * * *
7112830 GAGTCCTATACTCTCTGAATGAATAG-GAGC-GGACAAGTTCGTTGAAGA---TT-
1 GAGTCTTATACTCTCTGAAGGAATAGAGAGCAGG-CACGTT-TTTGAAGATTGTTC
* * * *
7112880 GAGTCCTATAC-C-CTGAAAGAATAGGGAGC-GG-ACCTGTTTATTGAAGATTTTTC
1 GAGTCTTATACTCTCTGAAGGAATAGAGAGCAGGCA-C-GTTT-TTGAAGATTGTTC
* *
7112933 GAGT-TCTATACTCTCTGAAGGAATAGAGAG-TGGACCCGTTTATTGAAGATTGTTC
1 GAGTCT-TATACTCTCTGAAGGAATAGAGAGCAGG-CACGTTT-TTGAAGATTGTTC
* * * *
7112988 AAGTC-TATACTCTCTGAATGAATAGAGAGCAGACACATTTTATGAAGATTGTTC
1 GAGTCTTATACTCTCTGAAGGAATAGAGAGCAGGCACGTTTT-TGAAGATTGTTC
* *
7113042 GAGTCTTATACT-TCTTGAAGGAATAG-GAGCAGGCTCGTCATTTGAAGATT
1 GAGTCTTATACTCTC-TGAAGGAATAGAGAGCAGGCACGT-TTTTGAAGATT
7113092 TTTCAAGTTT
Statistics
Matches: 271, Mismatches: 22, Indels: 37
0.82 0.07 0.11
Matches are distributed among these distances:
47 1 0.00
48 11 0.04
49 17 0.06
50 34 0.13
51 76 0.28
52 2 0.01
53 10 0.04
54 64 0.24
55 55 0.20
56 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (54 bp):
GAGTCTTATACTCTCTGAAGGAATAGAGAGCAGGCACGTTTTTGAAGATTGTTC
Found at i:7118347 original size:18 final size:18
Alignment explanation
Indices: 7118324--7118360 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7118314 GACACATATG
7118324 ACGACAAG-TAAGATAACA
1 ACGACAAGAT-AGATAACA
7118342 ACGACAAGATAGATAACA
1 ACGACAAGATAGATAACA
7118360 A
1 A
7118361 GGGCAACGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 17 0.94
19 1 0.06
ACGTcount: A:0.57, C:0.16, G:0.16, T:0.11
Consensus pattern (18 bp):
ACGACAAGATAGATAACA
Found at i:7120019 original size:24 final size:23
Alignment explanation
Indices: 7119966--7120045 Score: 63
Period size: 24 Copynumber: 3.4 Consensus size: 23
7119956 AGTAATAACA
* * *
7119966 TATATTTTTAATTTTTGAATAAT
1 TATATTTTTATTTTTTGTATTAT
7119989 T-TAATTTTTATTTTTTGGTATTAT
1 TAT-ATTTTTATTTTTT-GTATTAT
** * *
7120013 TATATTTACATTTTTTAATATTTT
1 TATATTTTTATTTTTT-GTATTAT
7120037 TATATTTTT
1 TATATTTTT
7120046 TAATTTAAAA
Statistics
Matches: 44, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
22 1 0.02
23 13 0.30
24 29 0.66
25 1 0.02
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.68
Consensus pattern (23 bp):
TATATTTTTATTTTTTGTATTAT
Found at i:7123939 original size:25 final size:23
Alignment explanation
Indices: 7123911--7123958 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
7123901 CTTTGAATAA
7123911 ATATTACTTTTATATATATTATATT
1 ATATTA-TTTTATATATATT-TATT
* *
7123936 ATATTATTTTTTATTTATTTATT
1 ATATTATTTTATATATATTTATT
7123959 TTTCTTAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 4 0.19
24 11 0.52
25 6 0.29
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (23 bp):
ATATTATTTTATATATATTTATT
Found at i:7125642 original size:45 final size:45
Alignment explanation
Indices: 7125555--7125651 Score: 151
Period size: 45 Copynumber: 2.2 Consensus size: 45
7125545 TAGTATCGGG
* * *
7125555 TCGGTTTGGTTTGGTTCGGGTCAACCTTTAGATTTTCTGGTCAAT
1 TCGGGTTGGTTTGATTCGGGTCAACCTTTAGATTTTCGGGTCAAT
7125600 TCGGGTTGGTTTTGATTCGGGTCAACCTTTAGA-TTTCGGGTCAAT
1 TCGGGTTGG-TTTGATTCGGGTCAACCTTTAGATTTTCGGGTCAAT
7125645 TCGGGTT
1 TCGGGTT
7125652 TATTTGGGTT
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
45 26 0.54
46 22 0.46
ACGTcount: A:0.13, C:0.15, G:0.29, T:0.42
Consensus pattern (45 bp):
TCGGGTTGGTTTGATTCGGGTCAACCTTTAGATTTTCGGGTCAAT
Found at i:7125974 original size:2 final size:2
Alignment explanation
Indices: 7125969--7125996 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7125959 AAAATACATA
7125969 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7125997 TTGATTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7129119 original size:16 final size:16
Alignment explanation
Indices: 7129100--7129130 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7129090 AATTGAAATT
7129100 AATAAAAATAAAATAA
1 AATAAAAATAAAATAA
*
7129116 AATAAAATTAAAATA
1 AATAAAAATAAAATA
7129131 TAAGAATCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AATAAAAATAAAATAA
Found at i:7132905 original size:59 final size:59
Alignment explanation
Indices: 7132813--7132931 Score: 220
Period size: 59 Copynumber: 2.0 Consensus size: 59
7132803 TATGAATGTG
* *
7132813 TTTAACAATGTTAATTTAGTTTGAAAGTTTGTGTACAAATAAAGTCGATGTAATTATGC
1 TTTAACAATGTTAATTTAGTCTGAAAGTTTGTGTACAAATAAAGTCGATGTAATCATGC
7132872 TTTAACAATGTTAATTTAGTCTGAAAGTTTGTGTACAAATAAAGTCGATGTAATCATGC
1 TTTAACAATGTTAATTTAGTCTGAAAGTTTGTGTACAAATAAAGTCGATGTAATCATGC
7132931 T
1 T
7132932 CATTACATTC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.39
Consensus pattern (59 bp):
TTTAACAATGTTAATTTAGTCTGAAAGTTTGTGTACAAATAAAGTCGATGTAATCATGC
Done.