Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007984.1 Hibiscus syriacus cultivar Beakdansim tig00110429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12923621
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 36 of 65
Found at i:7321021 original size:21 final size:21
Alignment explanation
Indices: 7320996--7321037 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7320986 CTTCCAAGTT
7320996 CAATAATTGAAACAAAGTTTA
1 CAATAATTGAAACAAAGTTTA
*
7321017 CAATAATTGAAATAAAGTTTA
1 CAATAATTGAAACAAAGTTTA
7321038 AAAATAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (21 bp):
CAATAATTGAAACAAAGTTTA
Found at i:7332533 original size:2 final size:2
Alignment explanation
Indices: 7332526--7332565 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
7332516 ACTTTGCCTC
7332526 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
7332566 GTCTGTCTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:7338528 original size:158 final size:158
Alignment explanation
Indices: 7338349--7338664 Score: 632
Period size: 158 Copynumber: 2.0 Consensus size: 158
7338339 ACGCCTGTAG
7338349 AATCCTGCATGCTCAAAAAAAAACTCCTTATACCCTTCACGGTGGTAGGTGAAGGCAATTTCTCG
1 AATCCTGCATGCTCAAAAAAAAACTCCTTATACCCTTCACGGTGGTAGGTGAAGGCAATTTCTCG
7338414 ATCACCTCAACCTTGGCTTTGTCGACCTCGATTCCCTTATATGAAATCTTATGCCCCAGCACAAT
66 ATCACCTCAACCTTGGCTTTGTCGACCTCGATTCCCTTATATGAAATCTTATGCCCCAGCACAAT
7338479 TCTTTCTGTCACCATGAAGTGGCAATTT
131 TCTTTCTGTCACCATGAAGTGGCAATTT
7338507 AATCCTGCATGCTCAAAAAAAAACTCCTTATACCCTTCACGGTGGTAGGTGAAGGCAATTTCTCG
1 AATCCTGCATGCTCAAAAAAAAACTCCTTATACCCTTCACGGTGGTAGGTGAAGGCAATTTCTCG
7338572 ATCACCTCAACCTTGGCTTTGTCGACCTCGATTCCCTTATATGAAATCTTATGCCCCAGCACAAT
66 ATCACCTCAACCTTGGCTTTGTCGACCTCGATTCCCTTATATGAAATCTTATGCCCCAGCACAAT
7338637 TCTTTCTGTCACCATGAAGTGGCAATTT
131 TCTTTCTGTCACCATGAAGTGGCAATTT
7338665 TCCCAGTTGA
Statistics
Matches: 158, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
158 158 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (158 bp):
AATCCTGCATGCTCAAAAAAAAACTCCTTATACCCTTCACGGTGGTAGGTGAAGGCAATTTCTCG
ATCACCTCAACCTTGGCTTTGTCGACCTCGATTCCCTTATATGAAATCTTATGCCCCAGCACAAT
TCTTTCTGTCACCATGAAGTGGCAATTT
Found at i:7342213 original size:17 final size:19
Alignment explanation
Indices: 7342193--7342227 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
7342183 CCTAGAAAAG
7342193 AAGT-AAAC-AAAAATAAC
1 AAGTAAAACTAAAAATAAC
7342210 AAGTAAAACTAAAAATAA
1 AAGTAAAACTAAAAATAA
7342228 AAACTCTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 4 0.25
19 8 0.50
ACGTcount: A:0.71, C:0.09, G:0.06, T:0.14
Consensus pattern (19 bp):
AAGTAAAACTAAAAATAAC
Found at i:7346404 original size:13 final size:13
Alignment explanation
Indices: 7346404--7346433 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7346394 CCGTTGACCC
*
7346404 GACCCGACCCGTT
1 GACCCGACCAGTT
7346417 GACCCGACCAGTT
1 GACCCGACCAGTT
7346430 GACC
1 GACC
7346434 TGTTGACCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.20, C:0.43, G:0.23, T:0.13
Consensus pattern (13 bp):
GACCCGACCAGTT
Found at i:7346405 original size:18 final size:18
Alignment explanation
Indices: 7346382--7346425 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
7346372 ACCGGTTATA
7346382 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
7346400 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
7346418 ACCCGACC
1 ACCCGACC
7346426 AGTTGACCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.18, C:0.52, G:0.20, T:0.09
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:7347315 original size:19 final size:18
Alignment explanation
Indices: 7347266--7347315 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
7347256 GGATTAATAA
* *
7347266 ATCTGAAAAGATATATTG
1 ATCTGATAAGAAATATTG
7347284 ATCTGATAA-AAATATTG
1 ATCTGATAAGAAATATTG
*
7347301 ATGTGCATAAGAAAT
1 ATCTG-ATAAGAAAT
7347316 GTTAGTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 11 0.41
18 12 0.44
19 4 0.15
ACGTcount: A:0.46, C:0.06, G:0.16, T:0.32
Consensus pattern (18 bp):
ATCTGATAAGAAATATTG
Found at i:7348820 original size:24 final size:23
Alignment explanation
Indices: 7348788--7348874 Score: 93
Period size: 24 Copynumber: 3.7 Consensus size: 23
7348778 ATTTTTGGAT
*
7348788 TGAATTCTGTTCTGATACATTACC
1 TGAATTCTGTTCTGATAC-TGACC
* *
7348812 TGAATTCTGTTCTGATTCTGATC
1 TGAATTCTGTTCTGATACTGACC
* **
7348835 TGGATTCTGTTCTGATATCTGATA
1 TGAATTCTGTTCTGATA-CTGACC
*
7348859 TGAATTCTGTTTTGAT
1 TGAATTCTGTTCTGAT
7348875 TTCTGATATC
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
23 18 0.33
24 36 0.67
ACGTcount: A:0.21, C:0.15, G:0.17, T:0.47
Consensus pattern (23 bp):
TGAATTCTGTTCTGATACTGACC
Found at i:7348826 original size:12 final size:12
Alignment explanation
Indices: 7348811--7348879 Score: 61
Period size: 12 Copynumber: 5.8 Consensus size: 12
7348801 GATACATTAC
7348811 CTGAATTCTGTT
1 CTGAATTCTGTT
*
7348823 CTG-ATTCTGAT
1 CTGAATTCTGTT
*
7348834 CTGGATTCTGTT
1 CTGAATTCTGTT
*
7348846 CTG-ATATCTGAT
1 CTGAAT-TCTGTT
*
7348858 ATGAATTCTGTT
1 CTGAATTCTGTT
* *
7348870 TTGATTTCTG
1 CTGAATTCTG
7348880 ATATCTCCGT
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
11 12 0.26
12 33 0.70
13 2 0.04
ACGTcount: A:0.17, C:0.14, G:0.19, T:0.49
Consensus pattern (12 bp):
CTGAATTCTGTT
Found at i:7348879 original size:24 final size:24
Alignment explanation
Indices: 7348812--7348883 Score: 101
Period size: 24 Copynumber: 3.0 Consensus size: 24
7348802 ATACATTACC
*
7348812 TGAATTCTGTTCTGA-TTCTGATC
1 TGAATTCTGTTCTGATTTCTGATA
* *
7348835 TGGATTCTGTTCTGATATCTGATA
1 TGAATTCTGTTCTGATTTCTGATA
*
7348859 TGAATTCTGTTTTGATTTCTGATA
1 TGAATTCTGTTCTGATTTCTGATA
7348883 T
1 T
7348884 CTCCGTTTAC
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
23 14 0.33
24 28 0.67
ACGTcount: A:0.19, C:0.12, G:0.18, T:0.50
Consensus pattern (24 bp):
TGAATTCTGTTCTGATTTCTGATA
Found at i:7351866 original size:19 final size:18
Alignment explanation
Indices: 7351817--7351866 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
7351807 GGATTAATAA
* *
7351817 ATCTGAAAAGATATATTG
1 ATCTGATAAGAAATATTG
7351835 ATCTGATAA-AAATATTG
1 ATCTGATAAGAAATATTG
*
7351852 ATGTGCATAAGAAAT
1 ATCTG-ATAAGAAAT
7351867 GTTAGTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 11 0.41
18 12 0.44
19 4 0.15
ACGTcount: A:0.46, C:0.06, G:0.16, T:0.32
Consensus pattern (18 bp):
ATCTGATAAGAAATATTG
Found at i:7352599 original size:23 final size:23
Alignment explanation
Indices: 7352532--7352599 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 23
7352522 GAAGTGCCAG
**
7352532 ATAGAATTTGTCCCGATGGACCAC
1 ATAGAA-TTGTCCCGAAAGACCAC
* * * *
7352556 GTAAAAATGT-CCAAAAGGACCAC
1 ATAGAATTGTCCCGAAA-GACCAC
7352579 ATAGAATTGTCCCGAAAGACC
1 ATAGAATTGTCCCGAAAGACC
7352600 GCGTAGAACC
Statistics
Matches: 32, Mismatches: 10, Indels: 5
0.68 0.21 0.11
Matches are distributed among these distances:
22 3 0.09
23 20 0.62
24 9 0.28
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.19
Consensus pattern (23 bp):
ATAGAATTGTCCCGAAAGACCAC
Found at i:7361197 original size:36 final size:36
Alignment explanation
Indices: 7361145--7361283 Score: 242
Period size: 36 Copynumber: 3.9 Consensus size: 36
7361135 TTGGTGCTGG
*
7361145 ACATTGATACACGAATGTACCAAAACTGATATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
*
7361181 ACATTGATACAAGAATGTACCAAAGCTGATATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
*
7361217 ATATTGATACACGAATGTACCAAAGCTGATATGATA
1 ACATTGATACACGAATGTACCAAAGCTGATATGATA
*
7361253 ACATTGATACACGAATGTATCAAAGCTGATA
1 ACATTGATACACGAATGTACCAAAGCTGATA
7361284 ATACTCAACT
Statistics
Matches: 97, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 97 1.00
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.26
Consensus pattern (36 bp):
ACATTGATACACGAATGTACCAAAGCTGATATGATA
Found at i:7365252 original size:23 final size:23
Alignment explanation
Indices: 7365221--7365279 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
7365211 ACGCAGAATC
7365221 TGTCTCGAATGACCACATAGAAA
1 TGTCTCGAATGACCACATAGAAA
* * **
7365244 TGTCCCGAAAGACCACATAGATT
1 TGTCTCGAATGACCACATAGAAA
7365267 TGTCTCGAATGAC
1 TGTCTCGAATGAC
7365280 TGATTAGAAC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.24
Consensus pattern (23 bp):
TGTCTCGAATGACCACATAGAAA
Found at i:7365626 original size:36 final size:37
Alignment explanation
Indices: 7365553--7365626 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
7365543 TACTATAATT
**
7365553 AATTTATATATTTTCTTTAAAAAATTTAAATTCATAA
1 AATTTATATATTTTCTTTAAAAAATTTAAAAACATAA
* * *
7365590 AATTTATATATTTTTTTTACAAAA-TTAAAAAGATAA
1 AATTTATATATTTTCTTTAAAAAATTTAAAAACATAA
7365626 A
1 A
7365627 TATGTTTAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
36 10 0.31
37 22 0.69
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (37 bp):
AATTTATATATTTTCTTTAAAAAATTTAAAAACATAA
Found at i:7367576 original size:27 final size:30
Alignment explanation
Indices: 7367523--7367589 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 30
7367513 TAAACACTGG
* *
7367523 TTTATATAATATTAAAATTAAATTTAAA-A
1 TTTATATATTTTTAAAATTAAATTTAAATA
7367552 TTTATATATTTTTAAAA-TAAA-TTAAATA
1 TTTATATATTTTTAAAATTAAATTTAAATA
7367580 TTT-TAT-TTTT
1 TTTATATATTTT
7367590 CACATTTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
26 4 0.11
27 8 0.23
28 8 0.23
29 15 0.43
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (30 bp):
TTTATATATTTTTAAAATTAAATTTAAATA
Found at i:7368934 original size:388 final size:389
Alignment explanation
Indices: 7368179--7371286 Score: 4920
Period size: 389 Copynumber: 8.0 Consensus size: 389
7368169 CTATATCATT
* **
7368179 TTTTTTTCAACTAGATAATGTGACATGTGTCATCATCTGGTTAGAAGATAAATATCCAAATTAAA
1 TTTTTTTCAACTAGAT-A-GTGACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAA
*
7368244 TAAATTT-AATTATAGAAATAAACATTT-A-ATAATGGTGACATGTGTCAACATCTAATTGGTGA
64 TAAATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGA
*
7368306 ATTAAATTAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAACTGTATAATTATA
129 ATTAAATTAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATA
* * * * * *
7368371 CTGATTTTATTAATTATCACATCAACATTTTCGTTAGATATTGACGATAAATGACTTGATTGAAT
194 CTGATTTTATTAACTGTCACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGAAT
*
7368436 ACAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGGTCGATGG-AAAAAGT-AAATGGG
259 ACAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAA-TAAAAT-GG
* * * * *
7368499 CTAAATAATTAAGTGGTCAATGGTATAGTTTATCCTTCTTGTTATTATAAAATATGTTAGGGATT
322 CTAAATAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATT
7368564 TCA
387 TCA
* * *
7368567 TTTTTTTCAACTAGATAGTGACACGTGTCATTATTTGGTTAGAAGATAAATATATAAATTTAATA
1 TTTTTTTCAACTAGATAGTGACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAATA
* *
7368632 AATTTAAA-TATTTGAAATAAACATTTAATATAATGGTGGCATGTGTCAGCATCTAATTGGTGAA
66 AATTTAAATTA-TAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGAA
* *
7368696 TTAAATTAATTTAGGACCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATGC
130 TTAAATTAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATAC
* * *
7368761 TAATTTTATTTACTGTCACATCAACA-TTTCGTTAGATATTAAC-ATCAAGTGGCTTGAATGAAT
195 TGATTTTATTAACTGTCACATCAACATTTTCGTTAGATATTAACGA-CAAGTGGCTTGATTGAAT
* * * *
7368824 ACAATTAAATAGTTAAGTGGTCTCATTAAAAAAATTAAAAGATCGATGGCAAAAGTAAAAGGGTT
259 ACAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCT
7368889 AAATAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATTTC
324 AAATAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATTTC
7368954 A
389 A
*
7368955 TTTTTTTCAACTAGATAGTAACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAATA
1 TTTTTTTCAACTAGATAGTGACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAATA
*
7369020 AATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTAGTGAAT
66 AATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGAAT
* *
7369085 TAAATTAATTTAGGGCCAAATTGATAAAATGTGTAAATATTGAGGACTAAATGTATAATTATATT
131 TAAATTAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATACT
* * * * *
7369150 GATTTTATTAACTGACTCATCAATATTTTCGTTAGATATTAACGACAAGTGGCTTGGTTGAATAT
196 GATTTTATTAACTGTCACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGAATAC
7369215 AATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCTAA
261 AATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCTAA
* * * * *
7369280 ATAGTTTGGTGGTCAATGGTATAGTTTACCCTTCTTCTTCTTATAAAATATGTTAGGGGTTTTA
326 ATAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATTTCA
* ** *
7369344 TTTTTTTCAACCAGATAGTGACATATGTCATCATCTGGCTAGAAGATAAATATATAAATTAAATA
1 TTTTTTTCAACTAGATAGTGACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAATA
* *
7369409 AATTTAAATTATAAAAATAAACATTTAATAAAATGGTGACATGTGTCAGCATCTAATTGGTGAAT
66 AATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGAAT
* * *
7369474 TAAAATAATTTAGGGCCAAATTGATAAAATGTATAAATACTGAGGACTAAATGTATAATTATATT
131 TAAATTAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATACT
* * * * *
7369539 GATTTTATTAATTGTCACATCAATATTTTTGTTAG--ATTAACGTCAAGTGGCTTGAATGAATAC
196 GATTTTATTAACTGTCACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGAATAC
* * * *
7369602 AATTAAATAGTTAAGTGGTCTTATTTACAAAATTAAAAGATCGATAGCAAAAGTAAAATGGCTAA
261 AATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCTAA
*
7369667 ATAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGAATTTCA
326 ATAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATTTCA
*
7369731 TTTTTTTTCAACTAGATAGTAACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAAT
1 -TTTTTTTCAACTAGATAGTGACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAAT
* *
7369796 AAATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTGAGCATCTAATTAGTGAA
65 AAATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGAA
* *
7369861 TTAAATTAATTTAGGGCCAAATTGATAAAATGTGTAAATATTGAGGACTAAATGTATAATTATAT
130 TTAAATTAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATAC
* * * *
7369926 TGATTTTATTACCTGACTCATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGGTTGAATA
195 TGATTTTATTAACTGTCACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGAATA
* *
7369991 TAATTAAATAATTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCTA
260 CAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCTA
* * *
7370056 AATAGTTAGGTGGTCAATTGTATAGTTTACCCTTCTTCTTCTTATAAAATATGTTAGGGGTTTCA
325 AATAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATTTCA
* *
7370121 --TTTTTCAACTAGATAGTGACACATGTCATCATCTGATTAGAAGATAAATATATAAATTAAATA
1 TTTTTTTCAACTAGATAGTGACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAATA
* *
7370184 AATTTAAATTATAAAAATAAACATTTAATATAATAGTGACATGTGTCAGCATCTAATTGGTGAAT
66 AATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGAAT
* * *
7370249 TAAAATAATTTTGGGTCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATACT
131 TAAATTAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATACT
* * * *
7370314 GATTTTATTAATTGTCACATCAATATTTTCGTTAGATATTAACGTCAAGTGGCTTGAATGAATAC
196 GATTTTATTAACTGTCACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGAATAC
* * *
7370379 AATTAAATAGTTAAGTGGTCTTATTTACAAAATTAAAAGATCGATGGCAAAAGTAAAATGGCTAA
261 AATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCTAA
7370444 ATAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATTTCA
326 ATAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATTTCA
* *
7370508 TTTTTTTCAACTAGATAGTAACATGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAATA
1 TTTTTTTCAACTAGATAGTGACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAATA
* *
7370573 AATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTGAGCATCTAATTAGTGAAT
66 AATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGAAT
*
7370638 TAAATTAATTTAGGGCCAAATTGATAAAATGTGTAAATATTGAGGACTAAATGTATAATTATACT
131 TAAATTAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATACT
* *
7370703 GATTTTATT-ACATGACACATCAATATTTTCG-TAGATATTAACGACAAGTGGCTTGATTGAATA
196 GATTTTATTAAC-TGTCACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGAATA
*
7370766 TAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCTA
260 CAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCTA
* * *
7370831 AATAGTTAGGTGGTCAAT-GATATAGTTTACCCTTCTTCTTCTTATAAAATATGTTAGGGGTTTT
325 AATAGTTAGGTGGTCAATAG-TATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATTTC
7370895 A
389 A
*
7370896 TTTTTTTCAACTAGATAGTGACACATGTCATCATCTGGTTAGAAGATAAATATATAAAATTAAAT
1 TTTTTTTCAACTAGATAGTGACACGTGTCATCATCTGGTTAGAAGATAAATATAT-AAATTAAAT
*
7370961 AAATTTAAATTATAAAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGAA
65 AAATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGAA
* *
7371026 TTAAATTAATTTTGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATAT
130 TTAAATTAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATAC
*
7371091 TGATTTTATTAATTGTCACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGAATA
195 TGATTTTATTAACTGTCACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGAATA
* * * *
7371156 CAATTAAATAGTTAAGTAGTCTCATTAACAAAATTAAAAGATTGATGACAAAAATAAAA-GGAAT
260 CAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGG-CT
* * ** * *
7371220 AAATAGTTAGGTGATCAAT-GATATATTTTATTCTTATTTTTATTATAAAATATGTTAGGG-TTT
324 AAATAGTTAGGTGGTCAATAG-TATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATTT
7371283 CA
388 CA
7371285 TT
1 TT
7371287 CTTATTATAA
Statistics
Matches: 2504, Mismatches: 195, Indels: 41
0.91 0.07 0.01
Matches are distributed among these distances:
386 49 0.02
387 521 0.21
388 776 0.31
389 871 0.35
390 287 0.11
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (389 bp):
TTTTTTTCAACTAGATAGTGACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAATA
AATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGAAT
TAAATTAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATACT
GATTTTATTAACTGTCACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGAATAC
AATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCTAA
ATAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATTTCA
Found at i:7369738 original size:777 final size:778
Alignment explanation
Indices: 7368178--7371286 Score: 5156
Period size: 777 Copynumber: 4.0 Consensus size: 778
7368168 CCTATATCAT
* * **
7368178 TTTTTTTTCAACTAGATAATGTGACATGTGTCATCATCTGGTTAGAAGATAAATATCCAAATTAA
1 TTTTTTTTCAACTAGAT-A-GTAACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAA
* *
7368243 ATAAATTT-AATTATAGAAATAAACATTT-A-ATAATGGTGACATGTGTCAACATCTAATTGGTG
64 ATAAATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTAGTG
* *
7368305 AATTAAATTAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAACTGTATAATTAT
129 AATTAAATTAATTTAGGGCCAAATTGATAAAATGTGTAAATATTGAGGACTAAATGTATAATTAT
* * * * *
7368370 ACTGATTTTATTAA-TTATCACATCAACATTTTCGTTAGATATTGACGATAAATGACTTGATTGA
194 ACTGATTTTATTAACTGA-CACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGA
* *
7368434 ATACAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGGTCGATGG-AAAAAGT-AAATG
258 ATATAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAA-TAAAAT-
* * * * * *
7368497 GGCTAAATAATTAAGTGGTCAATGGTATAGTTTATCCTTCTTGTTATTATAAAATATGTTAGGGA
321 GGCTAAATAGTTAGGTGGTCAATGGTATAGTTTACCCTTCTTCTTCTTATAAAATATGTTAGGGG
* * *
7368562 TTTCATTTTTTTCAACTAGATAGTGACACGTGTCATTATTTGGTTAGAAGATAAATATATAAATT
386 TTTCATTTTTTTCAACTAGATAGTGACACATGTCATCATCTGGTTAGAAGATAAATATATAAATT
* ** *
7368627 TAATAAATTTAAA-TATTTGAAATAAACATTTAATATAATGGTGGCATGTGTCAGCATCTAATTG
451 AAATAAATTTAAATTA-TAAAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTG
* *
7368691 GTGAATTAAATTAATTTAGGACCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAAT
515 GTGAATTAAAATAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAAT
* * * * *
7368756 TATGCTAATTTTATTTACTGTCACATCAACA-TTTCGTTAGATATTAACATCAAGTGGCTTGAAT
580 TATACTGATTTTATTAATTGTCACATCAACATTTTCGTTAGA-ATTAACGTCAAGTGGCTTGAAT
* *
7368820 GAATACAATTAAATAGTTAAGTGGTCTCATTAAAAAAATTAAAAGATCGATGGCAAAAGTAAAAG
644 GAATACAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAGTAAAAT
*
7368885 GGTTAAATAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGA
709 GGCTAAATAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGA
7368950 TTTCA
774 TTTCA
7368955 -TTTTTTTCAACTAGATAGTAACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAAT
1 TTTTTTTTCAACTAGATAGTAACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAAT
7369019 AAATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTAGTGAA
66 AAATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTAGTGAA
*
7369084 TTAAATTAATTTAGGGCCAAATTGATAAAATGTGTAAATATTGAGGACTAAATGTATAATTATAT
131 TTAAATTAATTTAGGGCCAAATTGATAAAATGTGTAAATATTGAGGACTAAATGTATAATTATAC
* * *
7369149 TGATTTTATTAACTGACTCATCAATATTTTCGTTAGATATTAACGACAAGTGGCTTGGTTGAATA
196 TGATTTTATTAACTGACACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGAATA
7369214 TAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCTA
261 TAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCTA
* *
7369279 AATAGTTTGGTGGTCAATGGTATAGTTTACCCTTCTTCTTCTTATAAAATATGTTAGGGGTTTTA
326 AATAGTTAGGTGGTCAATGGTATAGTTTACCCTTCTTCTTCTTATAAAATATGTTAGGGGTTTCA
* * *
7369344 TTTTTTTCAACCAGATAGTGACATATGTCATCATCTGGCTAGAAGATAAATATATAAATTAAATA
391 TTTTTTTCAACTAGATAGTGACACATGTCATCATCTGGTTAGAAGATAAATATATAAATTAAATA
*
7369409 AATTTAAATTATAAAAATAAACATTTAATAAAATGGTGACATGTGTCAGCATCTAATTGGTGAAT
456 AATTTAAATTATAAAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGAAT
* *
7369474 TAAAATAATTTAGGGCCAAATTGATAAAATGTATAAATACTGAGGACTAAATGTATAATTATATT
521 TAAAATAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATACT
* *
7369539 GATTTTATTAATTGTCACATCAATATTTTTGTTAG-ATTAACGTCAAGTGGCTTGAATGAATACA
586 GATTTTATTAATTGTCACATCAACATTTTCGTTAGAATTAACGTCAAGTGGCTTGAATGAATACA
* * *
7369603 ATTAAATAGTTAAGTGGTCTTATTTACAAAATTAAAAGATCGATAGCAAAAGTAAAATGGCTAAA
651 ATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAGTAAAATGGCTAAA
*
7369668 TAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGAATTTCA
716 TAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATTTCA
7369731 TTTTTTTTCAACTAGATAGTAACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAAT
1 TTTTTTTTCAACTAGATAGTAACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAAT
*
7369796 AAATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTGAGCATCTAATTAGTGAA
66 AAATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTAGTGAA
*
7369861 TTAAATTAATTTAGGGCCAAATTGATAAAATGTGTAAATATTGAGGACTAAATGTATAATTATAT
131 TTAAATTAATTTAGGGCCAAATTGATAAAATGTGTAAATATTGAGGACTAAATGTATAATTATAC
* * *
7369926 TGATTTTATTACCTGACTCATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGGTTGAATA
196 TGATTTTATTAACTGACACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGAATA
*
7369991 TAATTAAATAATTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCTA
261 TAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCTA
*
7370056 AATAGTTAGGTGGTCAATTGTATAGTTTACCCTTCTTCTTCTTATAAAATATGTTAGGGGTTTCA
326 AATAGTTAGGTGGTCAATGGTATAGTTTACCCTTCTTCTTCTTATAAAATATGTTAGGGGTTTCA
*
7370121 --TTTTTCAACTAGATAGTGACACATGTCATCATCTGATTAGAAGATAAATATATAAATTAAATA
391 TTTTTTTCAACTAGATAGTGACACATGTCATCATCTGGTTAGAAGATAAATATATAAATTAAATA
*
7370184 AATTTAAATTATAAAAATAAACATTTAATATAATAGTGACATGTGTCAGCATCTAATTGGTGAAT
456 AATTTAAATTATAAAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGAAT
* *
7370249 TAAAATAATTTTGGGTCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATACT
521 TAAAATAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATACT
*
7370314 GATTTTATTAATTGTCACATCAATATTTTCGTTAGATATTAACGTCAAGTGGCTTGAATGAATAC
586 GATTTTATTAATTGTCACATCAACATTTTCGTTAGA-ATTAACGTCAAGTGGCTTGAATGAATAC
* *
7370379 AATTAAATAGTTAAGTGGTCTTATTTACAAAATTAAAAGATCGATGGCAAAAGTAAAATGGCTAA
650 AATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAGTAAAATGGCTAA
7370444 ATAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATTTCA
715 ATAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATTTCA
*
7370508 -TTTTTTTCAACTAGATAGTAACATGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAAT
1 TTTTTTTTCAACTAGATAGTAACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAAT
*
7370572 AAATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTGAGCATCTAATTAGTGAA
66 AAATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTAGTGAA
7370637 TTAAATTAATTTAGGGCCAAATTGATAAAATGTGTAAATATTGAGGACTAAATGTATAATTATAC
131 TTAAATTAATTTAGGGCCAAATTGATAAAATGTGTAAATATTGAGGACTAAATGTATAATTATAC
*
7370702 TGATTTTATT-ACATGACACATCAATATTTTCG-TAGATATTAACGACAAGTGGCTTGATTGAAT
196 TGATTTTATTAAC-TGACACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGAAT
7370765 ATAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCT
260 ATAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCT
* *
7370830 AAATAGTTAGGTGGTCAATGATATAGTTTACCCTTCTTCTTCTTATAAAATATGTTAGGGGTTTT
325 AAATAGTTAGGTGGTCAATGGTATAGTTTACCCTTCTTCTTCTTATAAAATATGTTAGGGGTTTC
7370895 ATTTTTTTCAACTAGATAGTGACACATGTCATCATCTGGTTAGAAGATAAATATATAAAATTAAA
390 ATTTTTTTCAACTAGATAGTGACACATGTCATCATCTGGTTAGAAGATAAATATAT-AAATTAAA
7370960 TAAATTTAAATTATAAAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGA
454 TAAATTTAAATTATAAAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGA
* *
7371025 ATTAAATTAATTTTGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATA
519 ATTAAAATAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATA
* * *
7371090 TTGATTTTATTAATTGTCACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGAAT
584 CTGATTTTATTAATTGTCACATCAACATTTTCGTTAGA-ATTAACGTCAAGTGGCTTGAATGAAT
* * * * *
7371155 ACAATTAAATAGTTAAGTAGTCTCATTAACAAAATTAAAAGATTGATGACAAAAATAAAA-GGAA
648 ACAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAGTAAAATGG-C
* * ** * *
7371219 TAAATAGTTAGGTGATCAAT-GATATATTTTATTCTTATTTTTATTATAAAATATGTTAGGG-TT
712 TAAATAGTTAGGTGGTCAATAG-TATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATT
7371282 TCA
776 TCA
7371285 TT
1 TT
7371287 CTTATTATAA
Statistics
Matches: 2207, Mismatches: 107, Indels: 35
0.94 0.05 0.01
Matches are distributed among these distances:
774 49 0.02
775 396 0.18
776 385 0.17
777 1052 0.48
778 325 0.15
ACGTcount: A:0.39, C:0.09, G:0.15, T:0.37
Consensus pattern (778 bp):
TTTTTTTTCAACTAGATAGTAACACGTGTCATCATCTGGTTAGAAGATAAATATATAAATTAAAT
AAATTTAAATTATAGAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTAGTGAA
TTAAATTAATTTAGGGCCAAATTGATAAAATGTGTAAATATTGAGGACTAAATGTATAATTATAC
TGATTTTATTAACTGACACATCAACATTTTCGTTAGATATTAACGACAAGTGGCTTGATTGAATA
TAATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAATAAAATGGCTA
AATAGTTAGGTGGTCAATGGTATAGTTTACCCTTCTTCTTCTTATAAAATATGTTAGGGGTTTCA
TTTTTTTCAACTAGATAGTGACACATGTCATCATCTGGTTAGAAGATAAATATATAAATTAAATA
AATTTAAATTATAAAAATAAACATTTAATATAATGGTGACATGTGTCAGCATCTAATTGGTGAAT
TAAAATAATTTAGGGCCAAATTGATAAAATGTATAAATATTGAGGACTAAATGTATAATTATACT
GATTTTATTAATTGTCACATCAACATTTTCGTTAGAATTAACGTCAAGTGGCTTGAATGAATACA
ATTAAATAGTTAAGTGGTCTCATTAACAAAATTAAAAGATCGATGGCAAAAGTAAAATGGCTAAA
TAGTTAGGTGGTCAATAGTATAGTTTACCCTTCTTCTTATTATAAAATATGTTAGGGATTTCA
Found at i:7371291 original size:29 final size:29
Alignment explanation
Indices: 7371257--7371320 Score: 112
Period size: 29 Copynumber: 2.2 Consensus size: 29
7371247 TTATTCTTAT
7371257 TTTTATTATAAAATATGTTAGGG-TTTCA
1 TTTTATTATAAAATATGTTAGGGATTTCA
7371285 TTCTTATTATAAAATATGTTAGGGATTTCA
1 TT-TTATTATAAAATATGTTAGGGATTTCA
7371315 TTTTAT
1 TTTTAT
7371321 ATAGTACAAC
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
28 2 0.06
29 25 0.74
30 7 0.21
ACGTcount: A:0.31, C:0.05, G:0.12, T:0.52
Consensus pattern (29 bp):
TTTTATTATAAAATATGTTAGGGATTTCA
Found at i:7371935 original size:16 final size:16
Alignment explanation
Indices: 7371903--7371940 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7371893 TATGATCACT
*
7371903 ATTTTTGGAATCTCAA
1 ATTTTCGGAATCTCAA
7371919 ATTTTCGGATATC-CAA
1 ATTTTCGGA-ATCTCAA
7371935 ATTTTC
1 ATTTTC
7371941 ATATCGGATC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 17 0.85
17 3 0.15
ACGTcount: A:0.29, C:0.16, G:0.11, T:0.45
Consensus pattern (16 bp):
ATTTTCGGAATCTCAA
Found at i:7372333 original size:20 final size:20
Alignment explanation
Indices: 7372308--7372347 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
7372298 TCCTAGATTA
7372308 AAACTTAATTTGACAAATAT
1 AAACTTAATTTGACAAATAT
7372328 AAACTTAATTTGACAAATAT
1 AAACTTAATTTGACAAATAT
7372348 GCTAAATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.35
Consensus pattern (20 bp):
AAACTTAATTTGACAAATAT
Found at i:7373460 original size:23 final size:24
Alignment explanation
Indices: 7373433--7373488 Score: 96
Period size: 23 Copynumber: 2.4 Consensus size: 24
7373423 AAACACTCAT
*
7373433 AAACATAGTTAGAGTA-AAAGTAA
1 AAACATAGTTAGAGTACAAACTAA
7373456 AAACATAGTTAGAGTACAAACTAA
1 AAACATAGTTAGAGTACAAACTAA
7373480 AAACATAGT
1 AAACATAGT
7373489 GAAAAACATA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 16 0.52
24 15 0.48
ACGTcount: A:0.55, C:0.09, G:0.14, T:0.21
Consensus pattern (24 bp):
AAACATAGTTAGAGTACAAACTAA
Found at i:7378087 original size:58 final size:58
Alignment explanation
Indices: 7377953--7378102 Score: 151
Period size: 58 Copynumber: 2.6 Consensus size: 58
7377943 GAATTATTCT
* * * *
7377953 AACTATGTATATTTATTTTCTAGAGAATCTTTAATGATTTTATATTTTAAAAGAAAAGA
1 AACTAT-TAAATTAATTTTCTTGAGAATCTTAAATGATTTTATATTTTAAAAGAAAAGA
* * * * * * * *
7378012 AAATTTTGAATTCATTTTCTTGAGAATATTAAATGATTTTATTTTTTTAAAA-TAAATA
1 AACTATTAAATTAATTTTCTTGAGAATCTTAAATGATTTTA-TATTTTAAAAGAAAAGA
*
7378070 AACTATTAAATTAATTTT-TTGGGAATCTTAAAT
1 AACTATTAAATTAATTTTCTTGAGAATCTTAAAT
7378103 AAAGAAATAA
Statistics
Matches: 73, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
57 13 0.18
58 47 0.64
59 13 0.18
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.47
Consensus pattern (58 bp):
AACTATTAAATTAATTTTCTTGAGAATCTTAAATGATTTTATATTTTAAAAGAAAAGA
Found at i:7378978 original size:21 final size:21
Alignment explanation
Indices: 7378953--7378999 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
7378943 TATCGAATTA
7378953 TTCTAACTATGTATATTTATT
1 TTCTAACTATGTATATTTATT
7378974 TTCTAACTATGTATATTTATT
1 TTCTAACTATGTATATTTATT
7378995 TTCTA
1 TTCTA
7379000 GAGAATCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.28, C:0.11, G:0.04, T:0.57
Consensus pattern (21 bp):
TTCTAACTATGTATATTTATT
Found at i:7379112 original size:58 final size:58
Alignment explanation
Indices: 7378978--7379127 Score: 151
Period size: 58 Copynumber: 2.6 Consensus size: 58
7378968 TTTATTTTCT
* * * *
7378978 AACTATGTATATTTATTTTCTAGAGAATCTTTAATGATTTTATATTTTAAAAGAAAAGA
1 AACTAT-TAAATTAATTTTCTTGAGAATCTTAAATGATTTTATATTTTAAAAGAAAAGA
* * * * * * * *
7379037 AAATTTTGAATTCATTTTCTTGAGAATATTAAATGATTTTATTTTTTTAAAA-TAAATA
1 AACTATTAAATTAATTTTCTTGAGAATCTTAAATGATTTTA-TATTTTAAAAGAAAAGA
*
7379095 AACTATTAAATTAATTTT-TTGGGAATCTTAAAT
1 AACTATTAAATTAATTTTCTTGAGAATCTTAAAT
7379128 AAAGAAATAA
Statistics
Matches: 73, Mismatches: 17, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
57 13 0.18
58 47 0.64
59 13 0.18
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.47
Consensus pattern (58 bp):
AACTATTAAATTAATTTTCTTGAGAATCTTAAATGATTTTATATTTTAAAAGAAAAGA
Found at i:7379324 original size:40 final size:39
Alignment explanation
Indices: 7379218--7379332 Score: 158
Period size: 39 Copynumber: 2.9 Consensus size: 39
7379208 AATGATACTA
* *
7379218 TTTTGGAAAAAGAAATAAATCGTTGAATTTACTTTCATG
1 TTTTGTAAAAAGAAATAAATCGTTGAATTTATTTTCATG
* * * *
7379257 TTTTTTAAAAGGAAATAAATCGATGAATTTATTTTCCTG
1 TTTTGTAAAAAGAAATAAATCGTTGAATTTATTTTCATG
*
7379296 TTTTGTAAAAAGAAAATAAATCTTTGAATTTATTTTC
1 TTTTGTAAAAAG-AAATAAATCGTTGAATTTATTTTC
7379333 TTGATAATCT
Statistics
Matches: 65, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 43 0.66
40 22 0.34
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (39 bp):
TTTTGTAAAAAGAAATAAATCGTTGAATTTATTTTCATG
Found at i:7379343 original size:137 final size:136
Alignment explanation
Indices: 7379201--7379453 Score: 332
Period size: 137 Copynumber: 1.9 Consensus size: 136
7379191 ATTCCTTAAG
*
7379201 AATCTTGA-ATGATACTAT-TTTGGAAAAAG-AAATAAATCGTTGAATTTACTTTCATGTTTTTT
1 AATCTT-ATATGATACT-TGTTT-GAAAAAGAAAATAAATCGTTGAATTTACTTTCATGTTTTAT
7379263 AAAAGGAAATAAATCGATGAATTTATTTTCCTGTTTTGTAAAAAGAAAATAAATCTTTGAATTTA
63 AAAAGGAAATAAATCGATGAATTTATTTTCCTGTTTTGT-AAAAGAAAATAAATCTTTGAATTTA
7379328 TTTTCTTGAT
127 TTTTCTTGAT
* * * * * **
7379338 AATCTTATATGATTCTTGTTTGTAAAAGAAAATAAATTGTTGGATTTATTTTTTTGTTTTATAAA
1 AATCTTATATGATACTTGTTTGAAAAAGAAAATAAATCGTTGAATTTACTTTCATGTTTTATAAA
* * * * *
7379403 AGGAAATAAATTGTTGGATTTGTTTTCCTGTTTTGTAAATGAAAATAAATC
66 AGGAAATAAATCGATGAATTTATTTTCCTGTTTTGTAAAAGAAAATAAATC
7379454 ATTATATTCA
Statistics
Matches: 100, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
136 22 0.22
137 78 0.78
ACGTcount: A:0.36, C:0.06, G:0.13, T:0.44
Consensus pattern (136 bp):
AATCTTATATGATACTTGTTTGAAAAAGAAAATAAATCGTTGAATTTACTTTCATGTTTTATAAA
AGGAAATAAATCGATGAATTTATTTTCCTGTTTTGTAAAAGAAAATAAATCTTTGAATTTATTTT
CTTGAT
Found at i:7379410 original size:39 final size:39
Alignment explanation
Indices: 7379356--7379542 Score: 189
Period size: 39 Copynumber: 4.8 Consensus size: 39
7379346 ATGATTCTTG
** **
7379356 TTTGTAAAAGAAAATAAATTGTTGGATTTATTTTTTTGT
1 TTTGTAAAAGAAAATAAATCATTGGATTTATTTTCCTGT
* * ** *
7379395 TTTATAAAAGGAAATAAATTGTTGGATTTGTTTTCCTGT
1 TTTGTAAAAGAAAATAAATCATTGGATTTATTTTCCTGT
* ** * *
7379434 TTTGTAAATGAAAATAAATCATTATATTCATTTTCATGT
1 TTTGTAAAAGAAAATAAATCATTGGATTTATTTTCCTGT
* *
7379473 TTTGTAAAAGAAAATAAAGCATTGGATTTATTTTCCTAT
1 TTTGTAAAAGAAAATAAATCATTGGATTTATTTTCCTGT
* *
7379512 TTTGTAAAATG-AAATAAAGCATT-TATTTATT
1 TTTGTAAAA-GAAAATAAATCATTGGATTTATT
7379543 CTAAAATAAA
Statistics
Matches: 124, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
38 7 0.06
39 116 0.94
40 1 0.01
ACGTcount: A:0.36, C:0.05, G:0.13, T:0.46
Consensus pattern (39 bp):
TTTGTAAAAGAAAATAAATCATTGGATTTATTTTCCTGT
Found at i:7389444 original size:11 final size:11
Alignment explanation
Indices: 7389428--7389466 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
7389418 GTGACCGGTC
7389428 AAACCGGTTCA
1 AAACCGGTTCA
7389439 AAACCGGTT--
1 AAACCGGTTCA
7389448 AAACCGG-TCA
1 AAACCGGTTCA
7389458 AAACCGGTT
1 AAACCGGTT
7389467 TCCAGCGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
8 1 0.04
9 7 0.28
10 7 0.28
11 10 0.40
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.18
Consensus pattern (11 bp):
AAACCGGTTCA
Found at i:7389446 original size:20 final size:19
Alignment explanation
Indices: 7389421--7389465 Score: 72
Period size: 20 Copynumber: 2.3 Consensus size: 19
7389411 ACGGATCGTG
7389421 ACCGGTCAAACCGGTTCAAA
1 ACCGGTCAAACCGG-TCAAA
*
7389441 ACCGGTTAAACCGGTCAAA
1 ACCGGTCAAACCGGTCAAA
7389460 ACCGGT
1 ACCGGT
7389466 TTCCAGCGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (19 bp):
ACCGGTCAAACCGGTCAAA
Found at i:7389463 original size:10 final size:10
Alignment explanation
Indices: 7389421--7389465 Score: 58
Period size: 9 Copynumber: 4.6 Consensus size: 10
7389411 ACGGATCGTG
7389421 ACCGGTC-AA
1 ACCGGTCAAA
7389430 ACCGGTTCAAA
1 ACCGG-TCAAA
*
7389441 ACCGGT-TAA
1 ACCGGTCAAA
7389450 ACCGGTCAAA
1 ACCGGTCAAA
7389460 ACCGGT
1 ACCGGT
7389466 TTCCAGCGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
9 13 0.42
10 11 0.35
11 7 0.23
ACGTcount: A:0.33, C:0.29, G:0.22, T:0.16
Consensus pattern (10 bp):
ACCGGTCAAA
Found at i:7396661 original size:10 final size:10
Alignment explanation
Indices: 7396641--7396676 Score: 56
Period size: 11 Copynumber: 3.6 Consensus size: 10
7396631 ACGGGTCGTG
7396641 ACCGGTC-AA
1 ACCGGTCAAA
7396650 ACCGGTCAAA
1 ACCGGTCAAA
7396660 ACCGGTTCAAA
1 ACCGG-TCAAA
7396671 ACCGGT
1 ACCGGT
7396677 TTCCAGCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 7 0.28
10 8 0.32
11 10 0.40
ACGTcount: A:0.33, C:0.31, G:0.22, T:0.14
Consensus pattern (10 bp):
ACCGGTCAAA
Found at i:7403028 original size:21 final size:21
Alignment explanation
Indices: 7403002--7403041 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7402992 AATACACGTA
7403002 GTATCAGTACTCCTTTTATGG
1 GTATCAGTACTCCTTTTATGG
*
7403023 GTATCAGTACTTCTTTTAT
1 GTATCAGTACTCCTTTTAT
7403042 TATTTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.47
Consensus pattern (21 bp):
GTATCAGTACTCCTTTTATGG
Found at i:7403679 original size:24 final size:24
Alignment explanation
Indices: 7403652--7403698 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7403642 TAAATTAAAA
7403652 TAAAAACAAAGT-TTGGGGAAATTT
1 TAAAAACAAA-TCTTGGGGAAATTT
* *
7403676 TAAAAAGAAATCTTGGTGAAATT
1 TAAAAACAAATCTTGGGGAAATT
7403699 AATTAAAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.47, C:0.04, G:0.19, T:0.30
Consensus pattern (24 bp):
TAAAAACAAATCTTGGGGAAATTT
Found at i:7406278 original size:184 final size:189
Alignment explanation
Indices: 7405881--7406304 Score: 547
Period size: 184 Copynumber: 2.3 Consensus size: 189
7405871 GGTGTAATCT
* * * *
7405881 GATTTTTTATAGATATTTATAACA-TTTAAGCTTTTAACTTATTTTGTTAGCGTGAAAATGTATA
1 GATTTATTATAGATATTTATAACATTTTCAGCTTTTAACTTATTTTGTTATCGCGAAAATGTATA
** * *
7405945 AGGCCTCAATCAACCTAAACTCTAGTAACATTTTTAGGTGCAATCGATTTTATTACAAAGAAAAT
66 AGGCCTCAATCAACCTAAACTCTAGTAACATTTTTAGGCACAAGCGATTTTATTACAAAGAAAAA
* * ** *
7406010 TAATATTTCATATCACAACCTAGTTTTTTAGAGAATTATAACATTCTTGGACGCAACTA
131 TAATATTTCAGATCACAACCTAGTTTCTTAGAGAACCATAACATTATTGGACGCAACTA
* * * * * * *
7406069 GATTTCTCATAGATATTCATAACATTTTCAGTTTTTAACTTATTTTATTATCGCGAGAATGTCTA
1 GATTTATTATAGATATTTATAACATTTTCAGCTTTTAACTTATTTTGTTATCGCGAAAATGTATA
* * *
7406134 ATG-CTCCATCAACTTAAACTCT-GATAACA-TTTTAGGCACAAGCGATTTTATTACAAAGAAAA
66 AGGCCTCAATCAACCTAAACTCTAG-TAACATTTTTAGGCACAAGCGATTTTATTACAAAGAAAA
* * * *
7406196 ATAATGTTTCAGATCACAA-C-A-TTTCTTAGTGAGCCATAATATTATTGGACGCAACTA
130 ATAATATTTCAGATCACAACCTAGTTTCTTAGAGAACCATAACATTATTGGACGCAACTA
7406253 GATTTATTATAGATATTTATAACATTTTCAGCTTTTAACTTATTTTGTTATC
1 GATTTATTATAGATATTTATAACATTTTCAGCTTTTAACTTATTTTGTTATC
7406305 AATTAGATAT
Statistics
Matches: 203, Mismatches: 31, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
184 76 0.37
185 1 0.00
186 1 0.00
187 47 0.23
188 43 0.21
189 35 0.17
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (189 bp):
GATTTATTATAGATATTTATAACATTTTCAGCTTTTAACTTATTTTGTTATCGCGAAAATGTATA
AGGCCTCAATCAACCTAAACTCTAGTAACATTTTTAGGCACAAGCGATTTTATTACAAAGAAAAA
TAATATTTCAGATCACAACCTAGTTTCTTAGAGAACCATAACATTATTGGACGCAACTA
Found at i:7412136 original size:38 final size:37
Alignment explanation
Indices: 7412061--7412139 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
7412051 GGATTTTTAA
7412061 TTCATTCGATTTAATTCGACTTGAAAAATATAAATAT
1 TTCATTCGATTTAATTCGACTTGAAAAATATAAATAT
* * *
7412098 TTCATTTGATTTGAATTTGA-TTCGAAAAATATATATAT
1 TTCATTCGATTT-AATTCGACTT-GAAAAATATAAATAT
7412136 TTCA
1 TTCA
7412140 CCCGATATGA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.35
38 24 0.65
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.44
Consensus pattern (37 bp):
TTCATTCGATTTAATTCGACTTGAAAAATATAAATAT
Found at i:7412151 original size:38 final size:37
Alignment explanation
Indices: 7412083--7412156 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 37
7412073 AATTCGACTT
*** *
7412083 GAAAAATATAAATATTTCATTTGATTTGAATTTGATTC
1 GAAAAATATAAATATTTCACCCGATATGAA-TTGATTC
*
7412121 GAAAAATATATATATTTCACCCGATATGAATTGATT
1 GAAAAATATAAATATTTCACCCGATATGAATTGATT
7412157 ATTTTTTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
37 6 0.19
38 25 0.81
ACGTcount: A:0.41, C:0.08, G:0.11, T:0.41
Consensus pattern (37 bp):
GAAAAATATAAATATTTCACCCGATATGAATTGATTC
Found at i:7413028 original size:15 final size:15
Alignment explanation
Indices: 7412998--7413056 Score: 54
Period size: 14 Copynumber: 4.1 Consensus size: 15
7412988 TATAATTGGT
*
7412998 TTTATGAAAAAT-AA
1 TTTATGTAAAATGAA
7413012 TTTATGTAAAATGAA
1 TTTATGTAAAATGAA
*
7413027 -TTATTTAAAACTG--
1 TTTATGTAAAA-TGAA
*
7413040 TTTACGTAAAATGAA
1 TTTATGTAAAATGAA
7413055 TT
1 TT
7413057 ACATTTTCTG
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
13 2 0.06
14 28 0.78
15 6 0.17
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (15 bp):
TTTATGTAAAATGAA
Found at i:7413057 original size:155 final size:156
Alignment explanation
Indices: 7412862--7413183 Score: 396
Period size: 155 Copynumber: 2.1 Consensus size: 156
7412852 TTATTTTATG
* * * * * * * *
7412862 TAAAATGAATTACATGAAAATTATTTACATAAAATAAATTATATTTTTTGAAAAATTA-TTTTCG
1 TAAAATGAATTA-TTTAAAACTGTTTACGTAAAATGAATTACATTTTCTGAAAAA-TAGTTTTCG
* * * * * *
7412926 AAAATTATTTTACGGTGTTTTCATGATATTATGTAAACCATTTTCACTAC-TGTTTGATATATTA
64 AAAACTATTTTACGATGTTTTCATGATATTATGTAAAACATTTTCACTACTTGCTTGATACACTA
** * **
7412990 TAATTGGTTTTATGAAAAATAATTTATG
129 TAATTAATTTTATAAAAAATAATTTACA
* *
7413018 TAAAATGAATTATTTAAAACTGTTTACGTAAAATGAATTACATTTTCTGTATAATAGTTTTCGAA
1 TAAAATGAATTATTTAAAACTGTTTACGTAAAATGAATTACATTTTCTGAAAAATAGTTTTCGAA
* * *
7413083 AACTATTTTACGATGTTTTGATGATGTTGTGTAAAACATTTTCACTACTTGCTTGATACACTATA
66 AACTATTTTACGATGTTTTCATGATATTATGTAAAACATTTTCACTACTTGCTTGATACACTATA
7413148 ATTAATTTTATAAAAAATAATTTACA
131 ATTAATTTTATAAAAAATAATTTACA
7413174 TAAAATGAAT
1 TAAAATGAAT
7413184 AAAGTTTGGT
Statistics
Matches: 140, Mismatches: 24, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
154 2 0.01
155 82 0.59
156 56 0.40
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (156 bp):
TAAAATGAATTATTTAAAACTGTTTACGTAAAATGAATTACATTTTCTGAAAAATAGTTTTCGAA
AACTATTTTACGATGTTTTCATGATATTATGTAAAACATTTTCACTACTTGCTTGATACACTATA
ATTAATTTTATAAAAAATAATTTACA
Found at i:7413414 original size:15 final size:15
Alignment explanation
Indices: 7413396--7413436 Score: 82
Period size: 15 Copynumber: 2.7 Consensus size: 15
7413386 AATAATACTA
7413396 AATATTTTAATAATT
1 AATATTTTAATAATT
7413411 AATATTTTAATAATT
1 AATATTTTAATAATT
7413426 AATATTTTAAT
1 AATATTTTAAT
7413437 TAAAAGAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
AATATTTTAATAATT
Found at i:7413420 original size:8 final size:8
Alignment explanation
Indices: 7413396--7413436 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
7413386 AATAATACTA
7413396 AATATTTT
1 AATATTTT
*
7413404 AATA-ATT
1 AATATTTT
7413411 AATATTTT
1 AATATTTT
*
7413419 AATA-ATT
1 AATATTTT
7413426 AATATTTT
1 AATATTTT
7413434 AAT
1 AAT
7413437 TAAAAGAACT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
7 12 0.44
8 15 0.56
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (8 bp):
AATATTTT
Found at i:7419398 original size:19 final size:19
Alignment explanation
Indices: 7419376--7419425 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
7419366 ATAATATTTT
*
7419376 TATTAAAATAATTTTAAAA
1 TATTAAAATAATATTAAAA
7419395 TATT-AAATAAATATTAAAA
1 TATTAAAAT-AATATTAAAA
7419414 -A-TAAAATAATAT
1 TATTAAAATAATAT
7419426 ATTTTTTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
17 6 0.21
18 9 0.32
19 13 0.46
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
TATTAAAATAATATTAAAA
Found at i:7419427 original size:19 final size:20
Alignment explanation
Indices: 7419379--7419428 Score: 63
Period size: 18 Copynumber: 2.7 Consensus size: 20
7419369 ATATTTTTAT
7419379 TAAAATAAT-T-TTAAAATA
1 TAAAATAATATATTAAAATA
*
7419397 TTAAATAA-ATATTAAAA-A
1 TAAAATAATATATTAAAATA
7419415 TAAAATAATATATT
1 TAAAATAATATATT
7419429 TTTTTGAATG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 16 0.59
19 11 0.41
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (20 bp):
TAAAATAATATATTAAAATA
Found at i:7421953 original size:136 final size:135
Alignment explanation
Indices: 7421811--7422081 Score: 533
Period size: 136 Copynumber: 2.0 Consensus size: 135
7421801 ATGTTTTTTA
7421811 TCATTAATTCCTTTTATCATATAATCTTGTACTTAACATTTATACACATCATATAATACATTTCA
1 TCATTAATTCCTTTTATCATATAATCTTGTACTTAACATTTATACACATCATATAATACATTTCA
7421876 CACAACAAAACTCATAACATAACATACAATTTATTTATGTTATCTCTTTTATTAGCCCATGATAC
66 CACAACAAAACTCATAACAT-ACATACAATTTATTTATGTTATCTCTTTTATTAGCCCATGATAC
7421941 ACTTAT
130 ACTTAT
7421947 TCATTAATTCCTTTTATCATATAATCTTGTACTTAACATTTATACACATCATATAATACATTTCA
1 TCATTAATTCCTTTTATCATATAATCTTGTACTTAACATTTATACACATCATATAATACATTTCA
7422012 CACAACAAAACTCATAACATACATACAATTTATTTATGTTATCTCTTTTATTAGCCCATGATACA
66 CACAACAAAACTCATAACATACATACAATTTATTTATGTTATCTCTTTTATTAGCCCATGATACA
7422077 CTTAT
131 CTTAT
7422082 GAGAACTAAA
Statistics
Matches: 135, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
135 50 0.37
136 85 0.63
ACGTcount: A:0.37, C:0.20, G:0.03, T:0.41
Consensus pattern (135 bp):
TCATTAATTCCTTTTATCATATAATCTTGTACTTAACATTTATACACATCATATAATACATTTCA
CACAACAAAACTCATAACATACATACAATTTATTTATGTTATCTCTTTTATTAGCCCATGATACA
CTTAT
Found at i:7426547 original size:149 final size:148
Alignment explanation
Indices: 7426380--7426661 Score: 546
Period size: 149 Copynumber: 1.9 Consensus size: 148
7426370 TCACACACAC
7426380 ATATATATATCCAAATATTTACCCTTAAAACTAACTTCAAATCACTAATTTTTATATATGGATTG
1 ATATATATATCCAAATATTTACCCTTAAAACTAACTTCAAATCACTAATTTTTATATATGGATTG
*
7426445 TATGTTATGAACTTTTAAATTTTTATGTATATCCTATGTGCTTTTTTTTAAAAAATAAATTAAAA
66 TATGTTATGAACTTTTAAATTTTTATGTATATCCTATGTGATTTTTTTT-AAAAATAAATTAAAA
7426510 AGTACACACACACATATAT
130 AGTACACACACACATATAT
7426529 ATATATATATCCAAATATTTACCCTTAAAACTAACTTCAAATCACTAATTTTTATATATGGATTG
1 ATATATATATCCAAATATTTACCCTTAAAACTAACTTCAAATCACTAATTTTTATATATGGATTG
7426594 TATGTTATGAACTTTTAAATTTTTATGTATATCCTATGTGATTTTTTTTAAAAATAAATTAAAAA
66 TATGTTATGAACTTTTAAATTTTTATGTATATCCTATGTGATTTTTTTTAAAAATAAATTAAAAA
7426659 GTA
131 GTA
7426662 TATATGAATC
Statistics
Matches: 132, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
148 19 0.14
149 113 0.86
ACGTcount: A:0.39, C:0.11, G:0.06, T:0.43
Consensus pattern (148 bp):
ATATATATATCCAAATATTTACCCTTAAAACTAACTTCAAATCACTAATTTTTATATATGGATTG
TATGTTATGAACTTTTAAATTTTTATGTATATCCTATGTGATTTTTTTTAAAAATAAATTAAAAA
GTACACACACACATATAT
Found at i:7427087 original size:21 final size:21
Alignment explanation
Indices: 7427061--7427116 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
7427051 TTTTACACTG
7427061 ATGCAACGATGCACCATGGGT
1 ATGCAACGATGCACCATGGGT
7427082 ATGCAACGATGCACCATGGGT
1 ATGCAACGATGCACCATGGGT
*
7427103 ATGCATCGATGCAC
1 ATGCAACGATGCAC
7427117 TGACACTCCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.29, C:0.25, G:0.27, T:0.20
Consensus pattern (21 bp):
ATGCAACGATGCACCATGGGT
Found at i:7429302 original size:17 final size:18
Alignment explanation
Indices: 7429256--7429304 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
7429246 TGTTTTTGAG
* *
7429256 GGAATTAGAATCTGTGAT
1 GGAATTGGAATCTGTCAT
* *
7429274 GAAATTGAAATCTGTCA-
1 GGAATTGGAATCTGTCAT
7429291 GGAATTGGAATCTG
1 GGAATTGGAATCTG
7429305 AATCTGAAAC
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 12 0.48
18 13 0.52
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.31
Consensus pattern (18 bp):
GGAATTGGAATCTGTCAT
Found at i:7429846 original size:23 final size:23
Alignment explanation
Indices: 7429802--7429858 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
7429792 CATTTTAATC
*
7429802 AAAATATTAATTATTAAAATTTTT
1 AAAATA-TAATTATTAAAATTTCT
* *
7429826 AAAATATATTTATTAATATTTCT
1 AAAATATAATTATTAAAATTTCT
7429849 AATAATATAA
1 AA-AATATAA
7429859 CATAACACTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 16 0.57
24 12 0.43
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
AAAATATAATTATTAAAATTTCT
Found at i:7442557 original size:2 final size:2
Alignment explanation
Indices: 7442550--7442579 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7442540 ACATACATAC
7442550 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7442580 CATTATCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7442971 original size:18 final size:18
Alignment explanation
Indices: 7442948--7443018 Score: 97
Period size: 18 Copynumber: 3.8 Consensus size: 18
7442938 ACTGAATATT
7442948 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
7442966 TGTCCCGAAGGACAACTGA
1 TGTCCCGAAGGACCACT-A
* *
7442985 TTGTTCCGAAGAACCACTA
1 -TGTCCCGAAGGACCACTA
7443004 TGTCCCGAAGGACCA
1 TGTCCCGAAGGACCA
7443019 TTGTTTATCC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
18 29 0.64
19 2 0.04
20 14 0.31
ACGTcount: A:0.30, C:0.30, G:0.23, T:0.18
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:7444742 original size:44 final size:44
Alignment explanation
Indices: 7444693--7444787 Score: 181
Period size: 44 Copynumber: 2.2 Consensus size: 44
7444683 ACTCCTTATA
*
7444693 CATCGATGCACTAATTGCGTTCGATGTTCATTTATTTGAGAGTG
1 CATCGATGCACTAATTGCATTCGATGTTCATTTATTTGAGAGTG
7444737 CATCGATGCACTAATTGCATTCGATGTTCATTTATTTGAGAGTG
1 CATCGATGCACTAATTGCATTCGATGTTCATTTATTTGAGAGTG
7444781 CATCGAT
1 CATCGAT
7444788 ATACATTGAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (44 bp):
CATCGATGCACTAATTGCATTCGATGTTCATTTATTTGAGAGTG
Found at i:7445141 original size:44 final size:44
Alignment explanation
Indices: 7445092--7445186 Score: 181
Period size: 44 Copynumber: 2.2 Consensus size: 44
7445082 ACTCCTTATA
*
7445092 CATCGATGCACTAATTGCGTTCGATGTTCATTTATTTGAGAGTG
1 CATCGATGCACTAATTGCATTCGATGTTCATTTATTTGAGAGTG
7445136 CATCGATGCACTAATTGCATTCGATGTTCATTTATTTGAGAGTG
1 CATCGATGCACTAATTGCATTCGATGTTCATTTATTTGAGAGTG
7445180 CATCGAT
1 CATCGAT
7445187 ATACATTGAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38
Consensus pattern (44 bp):
CATCGATGCACTAATTGCATTCGATGTTCATTTATTTGAGAGTG
Found at i:7445360 original size:399 final size:399
Alignment explanation
Indices: 7444622--7445419 Score: 1596
Period size: 399 Copynumber: 2.0 Consensus size: 399
7444612 ATCAATGCAC
7444622 TACCCATGCATCGATACACAAATCACCTTCGATGTTTTCATTTTAAGGGGTGCATCGATGCACTC
1 TACCCATGCATCGATACACAAATCACCTTCGATGTTTTCATTTTAAGGGGTGCATCGATGCACTC
7444687 CTTATACATCGATGCACTAATTGCGTTCGATGTTCATTTATTTGAGAGTGCATCGATGCACTAAT
66 CTTATACATCGATGCACTAATTGCGTTCGATGTTCATTTATTTGAGAGTGCATCGATGCACTAAT
7444752 TGCATTCGATGTTCATTTATTTGAGAGTGCATCGATATACATTGAAGATGCATCGATGCAAATTA
131 TGCATTCGATGTTCATTTATTTGAGAGTGCATCGATATACATTGAAGATGCATCGATGCAAATTA
7444817 CCCAGAATTACATTTTAAGCACGAACATGTCTTGTTTTGACCCCAAATTCTGCTTATTAATCCTT
196 CCCAGAATTACATTTTAAGCACGAACATGTCTTGTTTTGACCCCAAATTCTGCTTATTAATCCTT
7444882 CCTTATACCTTAAAACTTACCTATACATATTTAAACCTTCTTACAATACTATAACACTTCACCAT
261 CCTTATACCTTAAAACTTACCTATACATATTTAAACCTTCTTACAATACTATAACACTTCACCAT
7444947 ATCTCACAATTCACCATAATTCTTGAATCAAAGAATTTCATCAAATTTTCCATGTGTTCTAAATT
326 ATCTCACAATTCACCATAATTCTTGAATCAAAGAATTTCATCAAATTTTCCATGTGTTCTAAATT
7445012 CAATTCTAT
391 CAATTCTAT
7445021 TACCCATGCATCGATACACAAATCACCTTCGATGTTTTCATTTTAAGGGGTGCATCGATGCACTC
1 TACCCATGCATCGATACACAAATCACCTTCGATGTTTTCATTTTAAGGGGTGCATCGATGCACTC
7445086 CTTATACATCGATGCACTAATTGCGTTCGATGTTCATTTATTTGAGAGTGCATCGATGCACTAAT
66 CTTATACATCGATGCACTAATTGCGTTCGATGTTCATTTATTTGAGAGTGCATCGATGCACTAAT
7445151 TGCATTCGATGTTCATTTATTTGAGAGTGCATCGATATACATTGAAGATGCATCGATGCAAATTA
131 TGCATTCGATGTTCATTTATTTGAGAGTGCATCGATATACATTGAAGATGCATCGATGCAAATTA
7445216 CCCAGAATTACATTTTAAGCACGAACATGTCTTGTTTTGACCCCAAATTCTGCTTATTAATCCTT
196 CCCAGAATTACATTTTAAGCACGAACATGTCTTGTTTTGACCCCAAATTCTGCTTATTAATCCTT
7445281 CCTTATACCTTAAAACTTACCTATACATATTTAAACCTTCTTACAATACTATAACACTTCACCAT
261 CCTTATACCTTAAAACTTACCTATACATATTTAAACCTTCTTACAATACTATAACACTTCACCAT
7445346 ATCTCACAATTCACCATAATTCTTGAATCAAAGAATTTCATCAAATTTTCCATGTGTTCTAAATT
326 ATCTCACAATTCACCATAATTCTTGAATCAAAGAATTTCATCAAATTTTCCATGTGTTCTAAATT
7445411 CAATTCTAT
391 CAATTCTAT
7445420 CACCTCTAAC
Statistics
Matches: 399, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
399 399 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.36
Consensus pattern (399 bp):
TACCCATGCATCGATACACAAATCACCTTCGATGTTTTCATTTTAAGGGGTGCATCGATGCACTC
CTTATACATCGATGCACTAATTGCGTTCGATGTTCATTTATTTGAGAGTGCATCGATGCACTAAT
TGCATTCGATGTTCATTTATTTGAGAGTGCATCGATATACATTGAAGATGCATCGATGCAAATTA
CCCAGAATTACATTTTAAGCACGAACATGTCTTGTTTTGACCCCAAATTCTGCTTATTAATCCTT
CCTTATACCTTAAAACTTACCTATACATATTTAAACCTTCTTACAATACTATAACACTTCACCAT
ATCTCACAATTCACCATAATTCTTGAATCAAAGAATTTCATCAAATTTTCCATGTGTTCTAAATT
CAATTCTAT
Found at i:7448189 original size:23 final size:23
Alignment explanation
Indices: 7448163--7448231 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
7448153 CACCACAGCT
*
7448163 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* * *
7448186 CGTAGAATTGCACCGTAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCA
7448209 CGTAGAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
7448232 TATAAGGTTG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 39 1.00
ACGTcount: A:0.30, C:0.26, G:0.26, T:0.17
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:7456061 original size:2 final size:2
Alignment explanation
Indices: 7456054--7456080 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7456044 TAAAATAAGA
7456054 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7456081 GAGAGAGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7456122 original size:2 final size:2
Alignment explanation
Indices: 7456115--7456148 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7456105 AACACAAATG
7456115 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7456149 GAGAGAGAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7458304 original size:20 final size:20
Alignment explanation
Indices: 7458258--7458305 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
7458248 TGAAAAAGCT
*
7458258 TCTTGAACTCCCATCTTTCA
1 TCTTGAGCTCCCATCTTTCA
7458278 TCTTGAGCTCCCATCTTTCA
1 TCTTGAGCTCCCATCTTTCA
7458298 TCTTGAGC
1 TCTTGAGC
7458306 ACTCATTCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.17, C:0.33, G:0.10, T:0.40
Consensus pattern (20 bp):
TCTTGAGCTCCCATCTTTCA
Found at i:7460399 original size:20 final size:20
Alignment explanation
Indices: 7460358--7460461 Score: 70
Period size: 21 Copynumber: 5.1 Consensus size: 20
7460348 CAATGCGAAC
* *
7460358 TCCAATTTCGTAACT-CAGTT
1 TCCAAATTCGCAACTCCA-TT
7460378 TCCAAATTCGCAACTCCATT
1 TCCAAATTCGCAACTCCATT
* * *
7460398 TCTGAAA-TCGCAACGCGATTT
1 TC-CAAATTCGCAACTCCA-TT
* *
7460419 TCCAAATTCGCAACACGAAATT
1 TCCAAATTCGCAACTC--CATT
*
7460441 T-CAAATTCGCAACTCGATT
1 TCCAAATTCGCAACTCCATT
7460460 TC
1 TC
7460462 TGAATTCACA
Statistics
Matches: 67, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
19 4 0.06
20 29 0.43
21 30 0.45
22 3 0.04
23 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.11, T:0.31
Consensus pattern (20 bp):
TCCAAATTCGCAACTCCATT
Found at i:7460405 original size:21 final size:21
Alignment explanation
Indices: 7460381--7460483 Score: 81
Period size: 21 Copynumber: 5.0 Consensus size: 21
7460371 CTCAGTTTCC
*
7460381 AAATTCGCAACTCCATTTCTG
1 AAATTCGCAACTCGATTTCTG
* *
7460402 AAA-TCGCAACGCGATTT-TCC
1 AAATTCGCAACTCGATTTCT-G
*
7460422 AAATTCGCAACACGAAATTTC--
1 AAATTCGCAACTCG--ATTTCTG
7460443 AAATTCGCAACTCGATTTCTG
1 AAATTCGCAACTCGATTTCTG
* *
7460464 -AATTCACAACGCGAATTTCT
1 AAATTCGCAACTCG-ATTTCT
7460484 TTTCGCAACA
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
19 6 0.09
20 26 0.39
21 31 0.46
23 4 0.06
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (21 bp):
AAATTCGCAACTCGATTTCTG
Found at i:7460468 original size:41 final size:41
Alignment explanation
Indices: 7460405--7460482 Score: 95
Period size: 41 Copynumber: 1.9 Consensus size: 41
7460395 ATTTCTGAAA
*
7460405 TCGCAACGCGATTTTCCAAATTCGCAACACGAAATTTCAAAT
1 TCGCAACGCGATTTTCCAAATTCACAACACG-AATTTCAAAT
* ** *
7460447 TCGCAACTCGA-TTTCTGAATTCACAACGCGAATTTC
1 TCGCAACGCGATTTTCCAAATTCACAACACGAATTTC
7460483 TTTTCGCAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
40 6 0.19
41 15 0.48
42 10 0.32
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (41 bp):
TCGCAACGCGATTTTCCAAATTCACAACACGAATTTCAAAT
Found at i:7461382 original size:12 final size:12
Alignment explanation
Indices: 7461361--7461394 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7461351 ACCACATTTC
*
7461361 CAATACCAAACA
1 CAATATCAAACA
7461373 CAATATCAAACA
1 CAATATCAAACA
*
7461385 CAATCTCAAA
1 CAATATCAAA
7461395 ACCCACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:7463875 original size:18 final size:18
Alignment explanation
Indices: 7463852--7463887 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7463842 AAGCAAAAGG
7463852 AAATCAAAATCACAATCA
1 AAATCAAAATCACAATCA
*
7463870 AAATCAAAATCCCAATCA
1 AAATCAAAATCACAATCA
7463888 CAACCGGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.58, C:0.25, G:0.00, T:0.17
Consensus pattern (18 bp):
AAATCAAAATCACAATCA
Found at i:7464190 original size:20 final size:20
Alignment explanation
Indices: 7464153--7464191 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7464143 TGTGAAAGTC
* *
7464153 AAATTCGCAACGCAAAAATA
1 AAATTCACAACACAAAAATA
*
7464173 AAATTCACAACACGAAAAT
1 AAATTCACAACACAAAAAT
7464192 CGAATTCGAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.56, C:0.21, G:0.08, T:0.15
Consensus pattern (20 bp):
AAATTCACAACACAAAAATA
Found at i:7464252 original size:20 final size:20
Alignment explanation
Indices: 7464211--7464252 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7464201 CAAATAAAAA
*
7464211 TCGCAATGCGAATTTGACTT
1 TCGCAATGCGAATTCGACTT
* *
7464231 TCGCATTGCGAATTCGATTT
1 TCGCAATGCGAATTCGACTT
7464251 TC
1 TC
7464253 TTAAAGGTAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (20 bp):
TCGCAATGCGAATTCGACTT
Found at i:7465783 original size:21 final size:21
Alignment explanation
Indices: 7465759--7465809 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
7465749 AGGTGGATCC
7465759 TGAACGATGGAAGAGGCCTCT
1 TGAACGATGGAAGAGGCCTCT
* *
7465780 TGAACGATGGGAGGGGCCTCT
1 TGAACGATGGAAGAGGCCTCT
*
7465801 TGAATGATG
1 TGAACGATG
7465810 ACAGGTGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.16, G:0.37, T:0.22
Consensus pattern (21 bp):
TGAACGATGGAAGAGGCCTCT
Found at i:7465836 original size:21 final size:21
Alignment explanation
Indices: 7465812--7465863 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
7465802 GAATGATGAC
*
7465812 AGGTGAATCTTGAACAATGGG
1 AGGTGAATCCTGAACAATGGG
* *
7465833 AGGTGGATCCTGAACAATGGT
1 AGGTGAATCCTGAACAATGGG
*
7465854 AGGTGTATCC
1 AGGTGAATCC
7465864 GGCTTCTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (21 bp):
AGGTGAATCCTGAACAATGGG
Found at i:7465858 original size:42 final size:42
Alignment explanation
Indices: 7465745--7465858 Score: 108
Period size: 42 Copynumber: 2.7 Consensus size: 42
7465735 TCCTGAACGG
** *
7465745 TGGGAGGTGGATCCTGAACGATGGAAGAG-GCCTCTTGAACGA
1 TGGGAGGTGGATCCTGAACGATGGAAG-GTGAATCTTGAACAA
* * *
7465787 TGGGAGG-GGCCTCTTGAATGAT-GACAGGTGAATCTTGAACAA
1 TGGGAGGTGG-ATCCTGAACGATGGA-AGGTGAATCTTGAACAA
* *
7465829 TGGGAGGTGGATCCTGAACAATGGTAGGTG
1 TGGGAGGTGGATCCTGAACGATGGAAGGTG
7465859 TATCCGGCTT
Statistics
Matches: 56, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
41 5 0.09
42 48 0.86
43 3 0.05
ACGTcount: A:0.26, C:0.14, G:0.38, T:0.22
Consensus pattern (42 bp):
TGGGAGGTGGATCCTGAACGATGGAAGGTGAATCTTGAACAA
Found at i:7466017 original size:4 final size:4
Alignment explanation
Indices: 7465996--7466029 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
7465986 GGACCGCTAA
* *
7465996 AAAT AAAT TAAT ACAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
7466030 TGCCGAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (4 bp):
AAAT
Found at i:7466303 original size:21 final size:21
Alignment explanation
Indices: 7466261--7466306 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
7466251 TGCACCATTG
* * *
7466261 TCATCACGTAAAGTACCGACC
1 TCATCACGCAAAGCACCAACC
*
7466282 TCATCACGCAAAGCACTAACC
1 TCATCACGCAAAGCACCAACC
7466303 TCAT
1 TCAT
7466307 GAGGTGGAGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.35, G:0.11, T:0.20
Consensus pattern (21 bp):
TCATCACGCAAAGCACCAACC
Found at i:7466499 original size:42 final size:42
Alignment explanation
Indices: 7466401--7466499 Score: 110
Period size: 42 Copynumber: 2.4 Consensus size: 42
7466391 GTGATGAAAT
* * * *
7466401 AGGTGATGGCTTTCGGTGTCTATGTGTATAATCGACTCGATC
1 AGGTGATGGCTCTCGGTGTCGATGTATAGAATCGACTCGATC
** * *
7466443 AGGTGATGATTCTCGGTGTCGA-GCTATAGAATCGGCTTGATC
1 AGGTGATGGCTCTCGGTGTCGATG-TATAGAATCGACTCGATC
7466485 AGGTGATGGCTCTCG
1 AGGTGATGGCTCTCG
7466500 AAGTGGGGGG
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
41 1 0.02
42 45 0.98
ACGTcount: A:0.19, C:0.17, G:0.31, T:0.32
Consensus pattern (42 bp):
AGGTGATGGCTCTCGGTGTCGATGTATAGAATCGACTCGATC
Found at i:7468020 original size:20 final size:20
Alignment explanation
Indices: 7467995--7468072 Score: 129
Period size: 20 Copynumber: 3.9 Consensus size: 20
7467985 TTTAAAACTT
*
7467995 AAATTCGCAACACGAAAATG
1 AAATTCGCAACGCGAAAATG
*
7468015 AAATTCGCAACGCGAAAATA
1 AAATTCGCAACGCGAAAATG
*
7468035 AAATTCGCATCGCGAAAATG
1 AAATTCGCAACGCGAAAATG
7468055 AAATTCGCAACGCGAAAA
1 AAATTCGCAACGCGAAAA
7468073 CTAAAACCGC
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.47, C:0.21, G:0.17, T:0.15
Consensus pattern (20 bp):
AAATTCGCAACGCGAAAATG
Found at i:7468051 original size:40 final size:41
Alignment explanation
Indices: 7467988--7468078 Score: 148
Period size: 40 Copynumber: 2.2 Consensus size: 41
7467978 AGTAGTTTTT
*
7467988 AAAACTTAAATTCGCAACACGAAAATGAAATTCGCAACGCG
1 AAAACTAAAATTCGCAACACGAAAATGAAATTCGCAACGCG
* *
7468029 AAAA-TAAAATTCGCATCGCGAAAATGAAATTCGCAACGCG
1 AAAACTAAAATTCGCAACACGAAAATGAAATTCGCAACGCG
7468069 AAAACTAAAA
1 AAAACTAAAA
7468079 CCGCGTTGCT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 37 0.80
41 9 0.20
ACGTcount: A:0.49, C:0.20, G:0.14, T:0.16
Consensus pattern (41 bp):
AAAACTAAAATTCGCAACACGAAAATGAAATTCGCAACGCG
Found at i:7468106 original size:14 final size:14
Alignment explanation
Indices: 7468083--7468122 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
7468073 CTAAAACCGC
*
7468083 GTTGCTATTTTCGT
1 GTTGCGATTTTCGT
7468097 GTTGCGATTTTCGT
1 GTTGCGATTTTCGT
*
7468111 GTTGCGAATTTC
1 GTTGCGATTTTC
7468123 ATTTTTGTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.10, C:0.15, G:0.25, T:0.50
Consensus pattern (14 bp):
GTTGCGATTTTCGT
Found at i:7468132 original size:20 final size:20
Alignment explanation
Indices: 7468103--7468141 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7468093 TCGTGTTGCG
7468103 ATTTTCGTGTTGCGAATTTC
1 ATTTTCGTGTTGCGAATTTC
*
7468123 ATTTTTGTGTTGCGAATTT
1 ATTTTCGTGTTGCGAATTT
7468142 AAGTTTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.15, C:0.10, G:0.21, T:0.54
Consensus pattern (20 bp):
ATTTTCGTGTTGCGAATTTC
Found at i:7468656 original size:21 final size:21
Alignment explanation
Indices: 7468632--7468694 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
7468622 TGCGATTTCA
7468632 GAAACTGAGTTGCGAATTTGG
1 GAAACTGAGTTGCGAATTTGG
*
7468653 GAAATTCGCA-TTGCGAATTT-G
1 GAAACT-G-AGTTGCGAATTTGG
* *
7468674 GAAACTGTGTTGCGAAATTGG
1 GAAACTGAGTTGCGAATTTGG
7468695 AGTCCGCGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
20 10 0.29
21 12 0.35
22 11 0.32
23 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.30, T:0.30
Consensus pattern (21 bp):
GAAACTGAGTTGCGAATTTGG
Found at i:7468661 original size:42 final size:42
Alignment explanation
Indices: 7468612--7468694 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
7468602 TACGAATTAC
* *
7468612 AAATTCGCGTTGCG-ATTTCAGAAACTGAGTTGCGAATTTGGG
1 AAATTCGCATTGCGAATTT-AGAAACTGAGTTGCGAAATTGGG
* *
7468654 AAATTCGCATTGCGAATTTGGAAACTGTGTTGCGAAATTGG
1 AAATTCGCATTGCGAATTTAGAAACTGAGTTGCGAAATTGG
7468695 AGTCCGCGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 32 0.89
43 4 0.11
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (42 bp):
AAATTCGCATTGCGAATTTAGAAACTGAGTTGCGAAATTGGG
Found at i:7468688 original size:20 final size:20
Alignment explanation
Indices: 7468632--7468695 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
7468622 TGCGATTTCA
7468632 GAAACTGAGTTGCGAATTTGG
1 GAAACTGAGTTGCGAATTT-G
*
7468653 GAAATTCGCA-TTGCGAATTTG
1 GAAACT-G-AGTTGCGAATTTG
* *
7468674 GAAACTGTGTTGCGAAATTG
1 GAAACTGAGTTGCGAATTTG
7468694 GA
1 GA
7468696 GTCCGCGTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
20 13 0.36
21 11 0.31
22 11 0.31
23 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30
Consensus pattern (20 bp):
GAAACTGAGTTGCGAATTTG
Found at i:7471054 original size:35 final size:34
Alignment explanation
Indices: 7471002--7471073 Score: 85
Period size: 36 Copynumber: 2.1 Consensus size: 34
7470992 ATTCAAACTT
*
7471002 AAATAGATATTATTTTAAT-TT-AAAATATACAAA
1 AAATAGATATTATTTTAATATTCAAAAT-TAAAAA
*
7471035 AAATATATAATTATCTTTAATATTCAAAATTAAAAA
1 AAATAGAT-ATTAT-TTTAATATTCAAAATTAAAAA
7471071 AAA
1 AAA
7471074 GTAACAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
33 7 0.21
34 5 0.15
35 6 0.18
36 10 0.30
37 5 0.15
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.38
Consensus pattern (34 bp):
AAATAGATATTATTTTAATATTCAAAATTAAAAA
Found at i:7477496 original size:191 final size:192
Alignment explanation
Indices: 7477111--7477518 Score: 497
Period size: 191 Copynumber: 2.1 Consensus size: 192
7477101 ATTAAATATA
* **
7477111 TAAAAA-TATCTTTTAATTTGA-AATATTCAAAAGGTAAAACTCATTTTACTATTCAAACTTAAA
1 TAAAAATTATCATTTAATTT-ACAATGGTCAAAAGGTAAAACTCATTTTACTATTCAAACTTAAA
* * *
7477174 TATGTATTATTTTAATTTGAAATATACAAAAATATATAATTATATTTAATATTCAAAGTTAAAAA
65 CATATATTATTTTAATTTGAAATATACAAAAATATATAATTATATTTAATATTCAAAATTAAAAA
* * * ** *
7477239 GGGTAACAAATACCTTTTTTAAGTTGACATATTCGAAGAGTAATTATCCTACTAATATTTAAAT
130 -GATAACAAATACCTTTCTTAAATTGACATATTAAAAAAGTAATTATCCTACTAATATTTAAAT
* * *
7477303 TAAATAA-TAT-ATTTAATTTACAATGGTCAAAAGGT-AAATTCCTTTTACTATTCATACTTAAA
1 TAAA-AATTATCATTTAATTTACAATGGTCAAAAGGTAAAACTCATTTTACTATTCAAACTTAAA
* * * * *
7477365 CATATATTATTTTAATTTGAAATATATAAAAGTATATAATTATCCTTTACTATTTAAAATTGAAA
65 CATATATTATTTTAATTTGAAATATACAAAAATATATAATTAT-ATTTAATATTCAAAATT-AAA
* * *
7477430 AA-ATAATAAATACC-TTCTTAAATTGACTTATTAAAAAAGTAATTATCCTATTAATATTTAAAA
128 AAGATAACAAATACCTTTCTTAAATTGACATATTAAAAAAGTAATTATCCTACTAATATTT-AAA
7477493 T
192 T
*
7477494 TAAAAATTATCCTTTAATTTACAAT
1 TAAAAATTATCATTTAATTTACAAT
7477519 AATAAAAAAC
Statistics
Matches: 185, Mismatches: 24, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
190 40 0.22
191 85 0.46
192 50 0.27
193 10 0.05
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.41
Consensus pattern (192 bp):
TAAAAATTATCATTTAATTTACAATGGTCAAAAGGTAAAACTCATTTTACTATTCAAACTTAAAC
ATATATTATTTTAATTTGAAATATACAAAAATATATAATTATATTTAATATTCAAAATTAAAAAG
ATAACAAATACCTTTCTTAAATTGACATATTAAAAAAGTAATTATCCTACTAATATTTAAAT
Found at i:7477526 original size:28 final size:28
Alignment explanation
Indices: 7477470--7477527 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
7477460 TTAAAAAAGT
* *
7477470 AATTATCCTATTAATATTTAAAATTAAA
1 AATTATCCTATTAATATTCAAAATAAAA
7477498 AATTATCCT-TTAAT-TTACAATAATAAAA
1 AATTATCCTATTAATATT-CAA-AATAAAA
7477526 AA
1 AA
7477528 CTATAAATTG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 2 0.08
27 7 0.27
28 17 0.65
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.40
Consensus pattern (28 bp):
AATTATCCTATTAATATTCAAAATAAAA
Found at i:7479903 original size:12 final size:13
Alignment explanation
Indices: 7479884--7479916 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7479874 TATTCAATTC
7479884 TATA-TATGCATG
1 TATAGTATGCATG
7479896 TAT-GTATGCATG
1 TATAGTATGCATG
7479908 TATAGTATG
1 TATAGTATG
7479917 TATATAATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.30, C:0.06, G:0.21, T:0.42
Consensus pattern (13 bp):
TATAGTATGCATG
Found at i:7482971 original size:12 final size:10
Alignment explanation
Indices: 7482930--7482969 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
7482920 TTATCACACA
7482930 AAATTCTCTC
1 AAATTCTCTC
7482940 AAATTCTCT-
1 AAATTCTCTC
7482949 AAATTTCTCTC
1 AAA-TTCTCTC
*
7482960 AAATACTCTC
1 AAATTCTCTC
7482970 TCTTTTTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 3 0.11
10 21 0.78
11 3 0.11
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.40
Consensus pattern (10 bp):
AAATTCTCTC
Found at i:7483048 original size:17 final size:18
Alignment explanation
Indices: 7483011--7483051 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
7483001 CTATTATGTA
*
7483011 TTTAATTTATTTAAGTAT
1 TTTACTTTATTTAAGTAT
7483029 TTTACTTTATTTAA-TAT
1 TTTACTTTATTTAAGTAT
7483046 TTTACT
1 TTTACT
7483052 AATATAATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (18 bp):
TTTACTTTATTTAAGTAT
Found at i:7483307 original size:111 final size:111
Alignment explanation
Indices: 7483113--7483445 Score: 612
Period size: 111 Copynumber: 3.0 Consensus size: 111
7483103 TGAAAATCAT
*
7483113 ATATCTCTACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
*
7483178 TATTTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
* *
7483224 ATATCTCGACACTTTGCTGATACAGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAATAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
*
7483289 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTGAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
*
7483335 ATATCTCGACACTTTGCTAATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
1 ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
7483400 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
66 TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
7483446 TTTTTGTAAT
Statistics
Matches: 213, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
111 213 1.00
ACGTcount: A:0.36, C:0.08, G:0.11, T:0.45
Consensus pattern (111 bp):
ATATCTCGACACTTTGCTGATACGGTAACATTTTAACGTTTTAATTTAATTTAAATTATTAGTAA
TAATTAGTTGATTTATTTAATGCATGATTATTAGATTAAGAATTAA
Found at i:7489339 original size:51 final size:51
Alignment explanation
Indices: 7489251--7489370 Score: 116
Period size: 51 Copynumber: 2.4 Consensus size: 51
7489241 TAGCGCGGAG
* * * * * *
7489251 CAGGGGACGCGCTATACCCCACGTGTAACCCAGTCAGCGTATAACGCT-GTA
1 CAGGGGGCGCGCTATACTCCACGTGGAACCAAATCAGCATATAACG-TGGTA
** * *
7489302 CAGGGGGCGCGCTATACTCCACGTGGCGCCAAATCAGCATATAGCGTGGTT
1 CAGGGGGCGCGCTATACTCCACGTGGAACCAAATCAGCATATAACGTGGTA
* *
7489353 CAGGGGGCACGCTTTACT
1 CAGGGGGCGCGCTATACT
7489371 GCTACGAGTG
Statistics
Matches: 56, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
50 1 0.02
51 55 0.98
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (51 bp):
CAGGGGGCGCGCTATACTCCACGTGGAACCAAATCAGCATATAACGTGGTA
Found at i:7498014 original size:21 final size:20
Alignment explanation
Indices: 7497989--7498041 Score: 54
Period size: 21 Copynumber: 2.6 Consensus size: 20
7497979 AAAATACATC
7497989 AGTATCGATACT-GACCATCTG
1 AGTATCGATACTGGACC-TC-G
* * *
7498010 GGTATCAATTCTGGACCTCG
1 AGTATCGATACTGGACCTCG
7498030 AGTATCGATACT
1 AGTATCGATACT
7498042 CCTTGAAGAG
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
20 10 0.40
21 11 0.44
22 4 0.16
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (20 bp):
AGTATCGATACTGGACCTCG
Found at i:7499246 original size:20 final size:20
Alignment explanation
Indices: 7499221--7499264 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
7499211 TGGGATTATA
7499221 GATACTGCCAGGGAAGTATC
1 GATACTGCCAGGGAAGTATC
*
7499241 GATACTGCTAGGGAAGTATC
1 GATACTGCCAGGGAAGTATC
7499261 GATA
1 GATA
7499265 TTACCCCTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.23
Consensus pattern (20 bp):
GATACTGCCAGGGAAGTATC
Found at i:7507433 original size:17 final size:18
Alignment explanation
Indices: 7507399--7507433 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
7507389 TGAGAGATTA
7507399 AGTAAATCCTGGAGAAGGT
1 AGTAAATCCT-GAGAAGGT
7507418 AGTAAATCCT-AGAAGG
1 AGTAAATCCTGAGAAGG
7507434 AAGAACTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
19 10 0.62
ACGTcount: A:0.40, C:0.11, G:0.29, T:0.20
Consensus pattern (18 bp):
AGTAAATCCTGAGAAGGT
Found at i:7508052 original size:13 final size:13
Alignment explanation
Indices: 7508034--7508059 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7508024 AAATAAAACG
7508034 TTTATTTTATTTT
1 TTTATTTTATTTT
7508047 TTTATTTTATTTT
1 TTTATTTTATTTT
7508060 CAGTTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTATTTTATTTT
Found at i:7508581 original size:11 final size:11
Alignment explanation
Indices: 7508567--7508591 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7508557 TAATATTAAT
7508567 ATATTATTTTA
1 ATATTATTTTA
7508578 ATATTATTTTA
1 ATATTATTTTA
7508589 ATA
1 ATA
7508592 AAAATATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
ATATTATTTTA
Found at i:7509102 original size:23 final size:23
Alignment explanation
Indices: 7509076--7509126 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
7509066 AAAACTACCA
* *
7509076 AAAGACAGAGATAAACGTGTTAC
1 AAAGACAAAGATAAACGTGTCAC
* *
7509099 AAAGGCAAAGATAAATGTGTCAC
1 AAAGACAAAGATAAACGTGTCAC
7509122 AAAGA
1 AAAGA
7509127 TAAAATTAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.51, C:0.12, G:0.22, T:0.16
Consensus pattern (23 bp):
AAAGACAAAGATAAACGTGTCAC
Found at i:7509444 original size:27 final size:29
Alignment explanation
Indices: 7509414--7509472 Score: 77
Period size: 30 Copynumber: 2.1 Consensus size: 29
7509404 TAATTCTATT
* *
7509414 ATAA-TAATACTTTTA-TTTTAATAATTA
1 ATAATTAATACTCTTATTTTTAATAAATA
7509441 ATAATTTAATACTCTTATTTTTAATAAATA
1 ATAA-TTAATACTCTTATTTTTAATAAATA
7509471 AT
1 AT
7509473 TAACATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
27 4 0.15
29 10 0.37
30 13 0.48
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (29 bp):
ATAATTAATACTCTTATTTTTAATAAATA
Found at i:7509605 original size:22 final size:21
Alignment explanation
Indices: 7509580--7509640 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 21
7509570 ATTCATAATA
* *
7509580 TTAAATAAATTATTTTAATATT
1 TTAAATAAATAATATTAAT-TT
7509602 TTAAA-ATAATAATATTAATTT
1 TTAAATA-AATAATATTAATTT
7509623 TTATAATAAATAATATTA
1 TTA-AATAAATAATATTA
7509641 TTTATATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
21 6 0.18
22 27 0.79
23 1 0.03
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAAATAAATAATATTAATTT
Found at i:7510157 original size:24 final size:24
Alignment explanation
Indices: 7510125--7510176 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
7510115 AATATAATTT
* *
7510125 TAAAAAAAATAA-TAACTAAATGGA
1 TAAAAAAAAAAATTAACT-AATAGA
*
7510149 TAAATAAAAAAATTAACTAATAGA
1 TAAAAAAAAAAATTAACTAATAGA
7510173 TAAA
1 TAAA
7510177 GTAGTTTACT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 19 0.79
25 5 0.21
ACGTcount: A:0.67, C:0.04, G:0.06, T:0.23
Consensus pattern (24 bp):
TAAAAAAAAAAATTAACTAATAGA
Found at i:7522261 original size:12 final size:12
Alignment explanation
Indices: 7522241--7522274 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7522231 TTTTGTTTTC
* *
7522241 CTTCGTCTTCGT
1 CTTCTTCTTCCT
7522253 CTTCTTCTTCCT
1 CTTCTTCTTCCT
7522265 CTTCTTCTTC
1 CTTCTTCTTC
7522275 TTCTACCTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.38, G:0.06, T:0.56
Consensus pattern (12 bp):
CTTCTTCTTCCT
Found at i:7522496 original size:6 final size:6
Alignment explanation
Indices: 7522487--7522512 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7522477 TCCATCTTTA
7522487 CCATTC CCATTC CCATTC CCATTC CC
1 CCATTC CCATTC CCATTC CCATTC CC
7522513 GTTTCATACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.54, G:0.00, T:0.31
Consensus pattern (6 bp):
CCATTC
Found at i:7525147 original size:25 final size:26
Alignment explanation
Indices: 7525103--7525153 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
7525093 TATTACCAAC
* **
7525103 ATGTGAATTTCTAATTTTTTA-AGAA
1 ATGTGAATTTATAAAATTTTATAGAA
7525128 ATGTGAATTTATAAAATTTTATAGAA
1 ATGTGAATTTATAAAATTTTATAGAA
7525154 GAAAACATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.41, C:0.02, G:0.12, T:0.45
Consensus pattern (26 bp):
ATGTGAATTTATAAAATTTTATAGAA
Found at i:7526153 original size:41 final size:41
Alignment explanation
Indices: 7526091--7526169 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
7526081 AGTTAGATGT
*
7526091 TATTATCATTTTAGTCACTCTCATTAAATTTTATTTTTCTC
1 TATTATCATTTTAATCACTCTCATTAAATTTTATTTTTCTC
* * * * *
7526132 TATTTTCATTTTAATGACTCTCCTTATATTTTGTTTTT
1 TATTATCATTTTAATCACTCTCATTAAATTTTATTTTT
7526170 ATTTTATCCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.22, C:0.15, G:0.04, T:0.59
Consensus pattern (41 bp):
TATTATCATTTTAATCACTCTCATTAAATTTTATTTTTCTC
Found at i:7526384 original size:14 final size:14
Alignment explanation
Indices: 7526367--7526395 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7526357 AATAAAATAT
7526367 TATTTTTAAAAAAA
1 TATTTTTAAAAAAA
7526381 TATTTTTAAAAAAA
1 TATTTTTAAAAAAA
7526395 T
1 T
7526396 CTGAACGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TATTTTTAAAAAAA
Found at i:7530814 original size:132 final size:132
Alignment explanation
Indices: 7530575--7530827 Score: 400
Period size: 132 Copynumber: 1.9 Consensus size: 132
7530565 TTTCTTGATT
* *
7530575 TTAATGTACTCACACATGCCTTTCACTTGATATTTTTAAATTATTTGAATTACCATGGGAAATTC
1 TTAATGTACTCACACATGCCTCTCACATGATATTTTTAAATTATTTGAATTACCATGGGAAATTC
*
7530640 AAGGGGAACGGTATAGGAGATGCAAGGAAGTCTTACCACATGGGCCAGAAATCACTTGATATTTT
66 AAGGGGAACAGTATAGGAGATGCAAGGAAGTCTTACCACATGGGCCAGAAATCACTTGATATTTT
7530705 TC
131 TC
** * *
7530707 TTAATGTACTCGTATATGCCTCTGACATGATATTTTTAAATTATTTGAATTACCATGGGAAATT-
1 TTAATGTACTCACACATGCCTCTCACATGATATTTTTAAATTATTTGAATTACCATGGGAAATTC
** *
7530771 TGGGAGGAACAGTATAGGAGATGCAAGGAAGTCTTACCGCATGGGCCAGAAATCACT
66 AAGG-GGAACAGTATAGGAGATGCAAGGAAGTCTTACCACATGGGCCAGAAATCACT
7530828 AGGCTGAAAA
Statistics
Matches: 110, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
131 2 0.02
132 108 0.98
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (132 bp):
TTAATGTACTCACACATGCCTCTCACATGATATTTTTAAATTATTTGAATTACCATGGGAAATTC
AAGGGGAACAGTATAGGAGATGCAAGGAAGTCTTACCACATGGGCCAGAAATCACTTGATATTTT
TC
Found at i:7533648 original size:103 final size:103
Alignment explanation
Indices: 7533451--7533768 Score: 465
Period size: 103 Copynumber: 3.0 Consensus size: 103
7533441 CCTGATGATA
*
7533451 TTTCTTTAGTATAACTTATTTTGATTGGTTTTAGTTTTGCTTTCAGCTATTAATTATTAAGCACT
1 TTTCTTTAGTATAACTTATTTTGATTGGTTTTTGTTTTGCTTTCAGC-------TATTAAGCACT
*
7533516 GGTTTGCTTAAATAAGTCCTCTTTCTTTGCTTTCCAGAACTTGAT
59 GGTTTGCTTAAATAAGTCCTCTTTCTTTGCTTTCCAGAACTGGAT
* *
7533561 TTTCCTTAGTATAACTTATTTTGATTGTTTTTTGTTTTGCTTTCAGCTATTAAGCACTGGTTTGC
1 TTTCTTTAGTATAACTTATTTTGATTGGTTTTTGTTTTGCTTTCAGCTATTAAGCACTGGTTTGC
*
7533626 TTAAATAAGTCCTCTTTTTTTGCTTTCCAGAACTGGAT
66 TTAAATAAGTCCTCTTTCTTTGCTTTCCAGAACTGGAT
* * * ** *
7533664 TTTCTTTAATATAACTTATATTGATTGGTTTTTGTTTTGCTATCAGCTATCGAGCACCGGTTTGC
1 TTTCTTTAGTATAACTTATTTTGATTGGTTTTTGTTTTGCTTTCAGCTATTAAGCACTGGTTTGC
*
7533729 TTACATAAGTCCTCTTTCTTTGCTTTCCAGAACTGGAT
66 TTAAATAAGTCCTCTTTCTTTGCTTTCCAGAACTGGAT
7533767 TT
1 TT
7533769 GAGGAGGATA
Statistics
Matches: 193, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
103 149 0.77
110 44 0.23
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.49
Consensus pattern (103 bp):
TTTCTTTAGTATAACTTATTTTGATTGGTTTTTGTTTTGCTTTCAGCTATTAAGCACTGGTTTGC
TTAAATAAGTCCTCTTTCTTTGCTTTCCAGAACTGGAT
Found at i:7537235 original size:23 final size:23
Alignment explanation
Indices: 7537210--7537315 Score: 124
Period size: 23 Copynumber: 4.7 Consensus size: 23
7537200 CAGTAAATGA
* * *
7537210 CAAGCATCACTGTATCAATTCAA
1 CAAGCATCATTGCATCAATTCAG
*
7537233 CAAGTATCATTGCATCAATTCAG
1 CAAGCATCATTGCATCAATTCAG
* *
7537256 CAATCATCTTTGCATCAATTCAG
1 CAAGCATCATTGCATCAATTCAG
* *
7537279 CAATCATCTTTGCATCAATTCAG
1 CAAGCATCATTGCATCAATTCAG
*
7537302 TAAGCATCA-TGCAT
1 CAAGCATCATTGCAT
7537316 TCAAAAAACA
Statistics
Matches: 73, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
22 5 0.07
23 68 0.93
ACGTcount: A:0.34, C:0.25, G:0.10, T:0.31
Consensus pattern (23 bp):
CAAGCATCATTGCATCAATTCAG
Found at i:7537444 original size:20 final size:20
Alignment explanation
Indices: 7537421--7537462 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7537411 TAAAATCAAG
* *
7537421 CAATATCAAACAGAAGCAAA
1 CAATATAAAACAAAAGCAAA
*
7537441 CAATATAAAACAAAATCAAA
1 CAATATAAAACAAAAGCAAA
7537461 CA
1 CA
7537463 CCAACTATTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.64, C:0.19, G:0.05, T:0.12
Consensus pattern (20 bp):
CAATATAAAACAAAAGCAAA
Found at i:7539510 original size:23 final size:23
Alignment explanation
Indices: 7539477--7539539 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
7539467 AATCTTATAT
*
7539477 GGCACTACGGTGCATTTCTACGC
1 GGCACTTCGGTGCATTTCTACGC
* *
7539500 GGCACTTCGGTGCAATTCTACGT
1 GGCACTTCGGTGCATTTCTACGC
7539523 GGCACTTCGGTGCATTT
1 GGCACTTCGGTGCATTT
7539540 ATATGAGCTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.16, C:0.27, G:0.27, T:0.30
Consensus pattern (23 bp):
GGCACTTCGGTGCATTTCTACGC
Found at i:7540178 original size:236 final size:236
Alignment explanation
Indices: 7539765--7540248 Score: 896
Period size: 236 Copynumber: 2.1 Consensus size: 236
7539755 TTGTTGTCAT
* *
7539765 TATTATTATATTGCCTCACTAAGTCGATGACTTAGCGTGTGAGTGTTTCACACGTAGGATCCGGG
1 TATTATTGTATTGCCTCACTAAGTCGATGACTTAGCGTGTGAGTGTTTCACACATAGGATCCGGG
* *
7539830 AAAGTAGACGAGACAGATTAAGCAGCTGGACAATATTACTCCTGCAACTATCAGATCAGAGGTAA
66 AAAGTAGACGAGACAGATTAAGCAGCTGGACAACATTACTCCTGCAACTATCAGATCAGAGGCAA
7539895 CTTGATCAGTAGGTCCTTTTGTTATGTAAATGAATGTTGGCATGTAATCAAAGGGTCACGTTGTG
131 CTTGATCAGTAGGTCCTTTTGTTATGTAAATGAATGTTGGCATGTAATCAAAGGGTCACGTTGTG
7539960 TATGCTATGAGTATTTTGATAAACTTGTATTAACATATATA
196 TATGCTATGAGTATTTTGATAAACTTGTATTAACATATATA
* *
7540001 TATTATTGTATTGTCTCACTAAGTCGATGACTTAGCGTGTGAGTGTTTCACACATAGGATCTGGG
1 TATTATTGTATTGCCTCACTAAGTCGATGACTTAGCGTGTGAGTGTTTCACACATAGGATCCGGG
*
7540066 AAAGTAGACGAGACATATTAAGCAGCTGGACAACATTACTCCTGCAACTATCAGATCAGAGGCAA
66 AAAGTAGACGAGACAGATTAAGCAGCTGGACAACATTACTCCTGCAACTATCAGATCAGAGGCAA
7540131 CTTGATCAGTAGGTCCTTTTGTTATGTAAATGAATGTTGGCATGTAATCAAAGGGTCACGTTGTG
131 CTTGATCAGTAGGTCCTTTTGTTATGTAAATGAATGTTGGCATGTAATCAAAGGGTCACGTTGTG
*
7540196 TATGCTATGAGTATTTTGATAAACTTGTATTAACATATGTA
196 TATGCTATGAGTATTTTGATAAACTTGTATTAACATATATA
7540237 TATTATTGTATT
1 TATTATTGTATT
7540249 TTAATAATAT
Statistics
Matches: 240, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
236 240 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (236 bp):
TATTATTGTATTGCCTCACTAAGTCGATGACTTAGCGTGTGAGTGTTTCACACATAGGATCCGGG
AAAGTAGACGAGACAGATTAAGCAGCTGGACAACATTACTCCTGCAACTATCAGATCAGAGGCAA
CTTGATCAGTAGGTCCTTTTGTTATGTAAATGAATGTTGGCATGTAATCAAAGGGTCACGTTGTG
TATGCTATGAGTATTTTGATAAACTTGTATTAACATATATA
Found at i:7547785 original size:23 final size:23
Alignment explanation
Indices: 7547733--7547793 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
7547723 CAATCTTATA
* *
7547733 TGGCACTACGGTGCAATTCTATG
1 TGGCACTTCGGTGCAATTCTACG
* *
7547756 CGACACTTCGGTGCAATTCTACG
1 TGGCACTTCGGTGCAATTCTACG
7547779 TGGCACTTCGGTGCA
1 TGGCACTTCGGTGCA
7547794 TTTATACGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.20, C:0.26, G:0.26, T:0.28
Consensus pattern (23 bp):
TGGCACTTCGGTGCAATTCTACG
Found at i:7550526 original size:29 final size:30
Alignment explanation
Indices: 7550459--7550532 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 30
7550449 GTTTCGAATA
*
7550459 GTTTGGATTCAGGCTTGGATTTAGGTTCGG
1 GTTTGGATTCAGGTTTGGATTTAGGTTCGG
** * * *
7550489 GTTCAGATTCGGGTTTGGA-TTGGGTTTGG
1 GTTTGGATTCAGGTTTGGATTTAGGTTCGG
7550518 GTTTGGATTCAGGTT
1 GTTTGGATTCAGGTT
7550533 CAGGTTTGGT
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
29 20 0.57
30 15 0.43
ACGTcount: A:0.12, C:0.08, G:0.38, T:0.42
Consensus pattern (30 bp):
GTTTGGATTCAGGTTTGGATTTAGGTTCGG
Found at i:7550538 original size:18 final size:18
Alignment explanation
Indices: 7550490--7550559 Score: 79
Period size: 18 Copynumber: 3.9 Consensus size: 18
7550480 TAGGTTCGGG
*
7550490 TTCAGATTCGGGTTTGGA
1 TTCAGGTTCGGGTTTGGA
* *
7550508 TT-GGGTTTGGGTTTGGA
1 TTCAGGTTCGGGTTTGGA
* *
7550525 TTCAGGTTCAGGTTTGGT
1 TTCAGGTTCGGGTTTGGA
*
7550543 TTCAGGTTCGAGTTTGG
1 TTCAGGTTCGGGTTTGG
7550560 GTTTGCATTA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
17 14 0.33
18 28 0.67
ACGTcount: A:0.11, C:0.09, G:0.37, T:0.43
Consensus pattern (18 bp):
TTCAGGTTCGGGTTTGGA
Found at i:7550941 original size:13 final size:13
Alignment explanation
Indices: 7550923--7550994 Score: 54
Period size: 13 Copynumber: 5.3 Consensus size: 13
7550913 TTATATATTT
7550923 TATATAGTTTATA
1 TATATAGTTTATA
*
7550936 TATATAATTTATA
1 TATATAGTTTATA
* *
7550949 CATATAGTTCATA
1 TATATAGTTTATA
* * *
7550962 TGTAAACTATATAGTA
1 TATATAGT-T-TA-TA
*
7550978 TATATAGTTTACA
1 TATATAGTTTATA
7550991 TATA
1 TATA
7550995 GTGTAAGTTA
Statistics
Matches: 43, Mismatches: 13, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
13 31 0.72
14 3 0.07
15 2 0.05
16 7 0.16
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.46
Consensus pattern (13 bp):
TATATAGTTTATA
Found at i:7551019 original size:72 final size:72
Alignment explanation
Indices: 7550859--7551027 Score: 168
Period size: 72 Copynumber: 2.4 Consensus size: 72
7550849 GTAAACTATA
* * * * **
7550859 TAGTTTATATGGTTTATATATATAGTTCATATGTAAATTACTAAACTATATATATTATATATTTT
1 TAGTATATATAGTTTATA-ATATAGTTCATATGTAAACTACTAAACTATATATATTACATATAGT
7550924 ATATAGTT
65 ATATAGTT
* * *
7550932 TA-TATATATAATTTATACATATAGTTCATATGTAAACTA-TATAGTATATATAGTTTACATATA
1 TAGTATATATAGTTTATA-ATATAGTTCATATGTAAACTACTAAACTATATATA--TTACATATA
*
7550995 GTGTA-AG-T
63 GTATATAGTT
*
7551003 TAGTATATATTGTTTAT-ATATAGTT
1 TAGTATATATAGTTTATAATATAGTT
7551028 TAAATACTAC
Statistics
Matches: 80, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
70 8 0.10
71 14 0.17
72 46 0.57
73 12 0.15
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49
Consensus pattern (72 bp):
TAGTATATATAGTTTATAATATAGTTCATATGTAAACTACTAAACTATATATATTACATATAGTA
TATAGTT
Found at i:7551202 original size:20 final size:20
Alignment explanation
Indices: 7551188--7551408 Score: 130
Period size: 20 Copynumber: 10.8 Consensus size: 20
7551178 GTATAGTTCA
7551188 TATATAATTTATATATAAAC
1 TATATAATTTATATATAAAC
*
7551208 TATATAATTTATATTAAAAAAC
1 TATATAATTTATA-T-ATAAAC
* * **
7551230 TATGTAGTTTATATAT-AGT
1 TATATAATTTATATATAAAC
* * *
7551249 TCA-ATAGTTCATATATAAAG
1 T-ATATAATTTATATATAAAC
* * **
7551269 TATATAGTTTATACATGGTA-
1 TATATAATTTATATAT-AAAC
* * *
7551289 TAAATAGTTTATACATAATA-
1 TATATAATTTATATATAA-AC
*
7551309 TATATAGTTTATATATAATA-
1 TATATAATTTATATATAA-AC
* * *
7551329 TATAATAATATAAAAATAAAC
1 TAT-ATAATTTATATATAAAC
*
7551350 TATATAGTTTATATATATAA-
1 TATATAATTTATATATA-AAC
7551370 TATATATACTTTATATATAAAC
1 TATATA-A-TTTATATATAAAC
7551392 TATATAATTTATATATA
1 TATATAATTTATATATA
7551409 GTTTATGCAT
Statistics
Matches: 160, Mismatches: 28, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
19 14 0.09
20 92 0.57
21 22 0.14
22 32 0.20
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (20 bp):
TATATAATTTATATATAAAC
Found at i:7551229 original size:22 final size:21
Alignment explanation
Indices: 7551188--7551243 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 21
7551178 GTATAGTTCA
*
7551188 TATATAATTTATA-TATAAAC
1 TATATAATTTATATTAAAAAC
7551208 TATATAATTTATATTAAAAAAC
1 TATATAATTTATATT-AAAAAC
* *
7551230 TATGTAGTTTATAT
1 TATATAATTTATAT
7551244 ATAGTTCAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 13 0.42
21 1 0.03
22 17 0.55
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (21 bp):
TATATAATTTATATTAAAAAC
Found at i:7551313 original size:2 final size:2
Alignment explanation
Indices: 7551306--7551447 Score: 55
Period size: 2 Copynumber: 70.0 Consensus size: 2
7551296 TTTATACATA
* * *
7551306 AT AT AT AT AGT TT AT AT AT A- AT AT AT A- AT A- AT AT AA AA AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
7551346 AA ACT AT AT AGT TT AT AT AT AT A- AT AT AT AT ACT TT AT AT AT
1 AT A-T AT AT A-T AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT
* * * **
7551388 AA ACT AT AT A- AT TT AT AT AT AGT TT AT GC AT A- AT AT AT AT AGT
1 AT A-T AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT AT A-T
7551431 -T CAT AT AT AGT AT AT AT
1 AT -AT AT AT A-T AT AT AT
7551448 GTAACATCCC
Statistics
Matches: 104, Mismatches: 20, Indels: 32
0.67 0.13 0.21
Matches are distributed among these distances:
1 7 0.07
2 87 0.84
3 10 0.10
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7551330 original size:9 final size:9
Alignment explanation
Indices: 7551298--7551447 Score: 58
Period size: 9 Copynumber: 15.8 Consensus size: 9
7551288 ATAAATAGTT
*
7551298 TATACATAA
1 TATATATAA
*
7551307 TATATATAG
1 TATATATAA
*
7551316 TTTATAT-A
1 TATATATAA
7551324 TAATATATAA
1 T-ATATATAA
7551334 TA-ATATAA
1 TATATATAA
*
7551342 -AAATA-AA
1 TATATATAA
*
7551349 CTATATAGTTTA
1 -TATATA--TAA
7551361 TATATATAA
1 TATATATAA
*
7551370 TATATATACTT
1 TATATATA--A
7551381 TATATATAA
1 TATATATAA
7551390 -ACTATATAA
1 TA-TATATAA
*
7551399 TTTATATATAG
1 --TATATATAA
*
7551410 TTTATGCATAA
1 TATAT--ATAA
*
7551421 TATATATAGT
1 TATATATA-A
*
7551431 TCATATATAG
1 T-ATATATAA
7551441 TATATAT
1 TATATAT
7551448 GTAACATCCC
Statistics
Matches: 107, Mismatches: 16, Indels: 36
0.67 0.10 0.23
Matches are distributed among these distances:
7 3 0.03
8 11 0.10
9 53 0.50
10 4 0.04
11 34 0.32
12 2 0.02
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (9 bp):
TATATATAA
Found at i:7551364 original size:11 final size:11
Alignment explanation
Indices: 7551350--7551447 Score: 62
Period size: 11 Copynumber: 9.3 Consensus size: 11
7551340 AAAAATAAAC
7551350 TATATAGTTTA
1 TATATAGTTTA
*
7551361 TATATA-TAATA
1 TATATAGT-TTA
*
7551372 TATATACTTTA
1 TATATAGTTTA
***
7551383 TATATAAACTA
1 TATATAGTTTA
7551394 TATA-A-TTTA
1 TATATAGTTTA
7551403 TATATAGTTTA
1 TATATAGTTTA
** *
7551414 TGCATA--ATA
1 TATATAGTTTA
*
7551423 TATATAGTTCA
1 TATATAGTTTA
*
7551434 TATATAGTATA
1 TATATAGTTTA
7551445 TAT
1 TAT
7551448 GTAACATCCC
Statistics
Matches: 65, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
9 12 0.18
10 3 0.05
11 49 0.75
12 1 0.02
ACGTcount: A:0.43, C:0.04, G:0.05, T:0.48
Consensus pattern (11 bp):
TATATAGTTTA
Found at i:7552316 original size:20 final size:20
Alignment explanation
Indices: 7552291--7552341 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
7552281 TCTTTAAGAA
7552291 GTATCGATAC-GTAAAGAGTG
1 GTATCGATACAGTAAAGAG-G
* *
7552311 GTATCGGTACTAGTTAAGAGG
1 GTATCGATAC-AGTAAAGAGG
7552332 GTATCGATAC
1 GTATCGATAC
7552342 CAAGGGTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 9 0.35
21 10 0.38
22 7 0.27
ACGTcount: A:0.31, C:0.12, G:0.29, T:0.27
Consensus pattern (20 bp):
GTATCGATACAGTAAAGAGG
Found at i:7556447 original size:20 final size:20
Alignment explanation
Indices: 7556408--7556448 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
7556398 CATTGCAGGA
*
7556408 ATTTATGGCCTCGACGAAAG
1 ATTTATGGCCTCCACGAAAG
7556428 ATTTCATGGCCTCCAC-AAAG
1 ATTT-ATGGCCTCCACGAAAG
7556448 A
1 A
7556449 CCTTGATGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (20 bp):
ATTTATGGCCTCCACGAAAG
Found at i:7571499 original size:103 final size:103
Alignment explanation
Indices: 7571311--7571520 Score: 278
Period size: 103 Copynumber: 2.0 Consensus size: 103
7571301 GGGTCTACGC
* ** *
7571311 GGTCCTTCAGGACATATATGTATTCTTTGGAACAGGTGTGAGATCTTTTGAGATAAATACTTGAT
1 GGTCATTCAGGACATATATGTATTCTTTGGAACAGGTGTGAGATCTGGTGAGACAAATACTTGAT
* * * *
7571376 CATTGGCATATGTATATGATTCTTAAGGAATGATATGT
66 CACTAGCATATATATATGATTCTTAAGGAATGATATAT
* * *
7571414 GGTCATTCGGGACATATATGTATTCTTTGGAACATGTGTGA-AGTCTGGTGAGACACATACTTGA
1 GGTCATTCAGGACATATATGTATTCTTTGGAACAGGTGTGAGA-TCTGGTGAGACAAATACTTGA
* * *
7571478 TCCCTAGTATATATATATGATTCTTAAGGAATGGTATAT
65 TCACTAGCATATATATATGATTCTTAAGGAATGATATAT
7571517 GGTC
1 GGTC
7571521 CTCATGGACA
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
102 1 0.01
103 91 0.99
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.37
Consensus pattern (103 bp):
GGTCATTCAGGACATATATGTATTCTTTGGAACAGGTGTGAGATCTGGTGAGACAAATACTTGAT
CACTAGCATATATATATGATTCTTAAGGAATGATATAT
Found at i:7571606 original size:23 final size:23
Alignment explanation
Indices: 7571541--7571607 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 23
7571531 TTATTATATA
* * *
7571541 GCACTACGGTGCAATTCTACGCG
1 GCACTTCGGTGCAATTATATGCG
*
7571564 GCAC-TCTGGTGCAATTATATGTG
1 GCACTTC-GGTGCAATTATATGCG
7571587 GCACTTCGGTGCAATTATATG
1 GCACTTCGGTGCAATTATATG
7571608 AGTTGTGTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
22 1 0.03
23 35 0.92
24 2 0.05
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (23 bp):
GCACTTCGGTGCAATTATATGCG
Found at i:7572047 original size:194 final size:194
Alignment explanation
Indices: 7571718--7572298 Score: 1090
Period size: 194 Copynumber: 3.0 Consensus size: 194
7571708 TGAAGATGAT
*
7571718 ATTATAGTTGCCTGGGTGTACATGTTTTATGATAGTATATATGGTATATGTTATATGATATACAT
1 ATTATAGTTGCCTGGGTGTACGTGTTTTATGATAGTATATATGGTATATGTTATATGATATACAT
7571783 GAGTACAGGTTAAGGTATATGTGAATGAGTATAATTGATTGAAATGATGATATAATAATAAGTCT
66 GAGTACAGGTTAAGGTATATGTGAATGAGTATAATTGATTGAAATGATGATATAATAATAAGTCT
7571848 ATAAGATATATGATATGGACATAAGAGATCATAGGAACATGAGATAAGAGATATGAATGATAAC
131 ATAAGATATATGATATGGACATAAGAGATCATAGGAACATGAGATAAGAGATATGAATGATAAC
* *
7571912 ATTATAGTTGCCTAGGTGTACGTGTTTTATGATAGTATATATGGTATATGTTATGTGATATACAT
1 ATTATAGTTGCCTGGGTGTACGTGTTTTATGATAGTATATATGGTATATGTTATATGATATACAT
* * *
7571977 GAGTATAGGTTAAGGTATATATGAATGAGTATAATTGATTGAAATGATGATATAATAATAAGCCT
66 GAGTACAGGTTAAGGTATATGTGAATGAGTATAATTGATTGAAATGATGATATAATAATAAGTCT
7572042 ATAAGATATATGATATGGACATAAGAGATCATAGGAACATGAGATAAGAGATATGAATGATAAC
131 ATAAGATATATGATATGGACATAAGAGATCATAGGAACATGAGATAAGAGATATGAATGATAAC
*
7572106 ATTATAGTTGCCTGGGTGTACGTGTTTTATGCTAGTATATATGGTATATGTTATATGATATACAT
1 ATTATAGTTGCCTGGGTGTACGTGTTTTATGATAGTATATATGGTATATGTTATATGATATACAT
*
7572171 GAGTACAGATTAAGGTATATGTGAATGAGTATAATTGATTGAAATGATGATATAATAATAAGTCT
66 GAGTACAGGTTAAGGTATATGTGAATGAGTATAATTGATTGAAATGATGATATAATAATAAGTCT
7572236 ATAAGATATATGATATGGACATAAGAGATCATAGGAACATGAGATAAGAGATATGAATGATAA
131 ATAAGATATATGATATGGACATAAGAGATCATAGGAACATGAGATAAGAGATATGAATGATAA
7572299 TGATATATAT
Statistics
Matches: 374, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
194 374 1.00
ACGTcount: A:0.39, C:0.05, G:0.22, T:0.34
Consensus pattern (194 bp):
ATTATAGTTGCCTGGGTGTACGTGTTTTATGATAGTATATATGGTATATGTTATATGATATACAT
GAGTACAGGTTAAGGTATATGTGAATGAGTATAATTGATTGAAATGATGATATAATAATAAGTCT
ATAAGATATATGATATGGACATAAGAGATCATAGGAACATGAGATAAGAGATATGAATGATAAC
Done.