Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007984.1 Hibiscus syriacus cultivar Beakdansim tig00110429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12923621
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 38 of 65
Found at i:7795034 original size:15 final size:14
Alignment explanation
Indices: 7795000--7795048 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
7794990 CAATTTTCCT
*
7795000 TTTTCTTTTTTTTT
1 TTTTCTTTTTTTTC
7795014 TCTTTCTTTTTTTTGC
1 T-TTTCTTTTTTTT-C
*
7795030 TTTTCCATTTTTTTC
1 TTTT-CTTTTTTTTC
7795045 TTTT
1 TTTT
7795049 TTCCTTCTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
14 1 0.03
15 20 0.67
16 9 0.30
ACGTcount: A:0.02, C:0.14, G:0.02, T:0.82
Consensus pattern (14 bp):
TTTTCTTTTTTTTC
Found at i:7795366 original size:2 final size:2
Alignment explanation
Indices: 7795359--7795384 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7795349 ACAACAAAGG
7795359 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7795385 TAAAGGATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7802167 original size:16 final size:16
Alignment explanation
Indices: 7802112--7802167 Score: 55
Period size: 19 Copynumber: 3.5 Consensus size: 16
7802102 GTAATATATA
*
7802112 TATATTTAATAATAA-
1 TATAATTAATAATAAT
7802127 -ATAA-TAATAATAAT
1 TATAATTAATAATAAT
7802141 CTATTATATTAATAATAAT
1 -TA-TA-ATTAATAATAAT
7802160 TATAATTA
1 TATAATTA
7802168 TTATTATAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
13 9 0.26
14 3 0.09
16 5 0.15
17 4 0.12
18 3 0.09
19 10 0.29
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TATAATTAATAATAAT
Found at i:7802169 original size:19 final size:19
Alignment explanation
Indices: 7802126--7802170 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
7802116 TTTAATAATA
*
7802126 AATAATAATAATAATCTAT
1 AATATTAATAATAATCTAT
*
7802145 TATATTAATAATAAT-TAT
1 AATATTAATAATAATCTAT
7802163 AATTATTA
1 AA-TATTA
7802171 TTATAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (19 bp):
AATATTAATAATAATCTAT
Found at i:7803685 original size:32 final size:31
Alignment explanation
Indices: 7803612--7803689 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 31
7803602 TTACTAATAA
*
7803612 AATTCGATAAATTTAATTGTCATTTTGTATC
1 AATTCGATAAATTTAATTGTCATTTTGTAGC
** **
7803643 CGTTTAATAAAATTTAA-TGATCATTTTGTAGC
1 AATTCGAT-AAATTTAATTG-TCATTTTGTAGC
7803675 AATTCGATAAATTTA
1 AATTCGATAAATTTA
7803690 TTTACCATTC
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
31 13 0.36
32 23 0.64
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.45
Consensus pattern (31 bp):
AATTCGATAAATTTAATTGTCATTTTGTAGC
Found at i:7807006 original size:23 final size:23
Alignment explanation
Indices: 7806979--7807033 Score: 110
Period size: 23 Copynumber: 2.4 Consensus size: 23
7806969 AAAATTAATA
7806979 TAAAATATATTATTTTAATTGTT
1 TAAAATATATTATTTTAATTGTT
7807002 TAAAATATATTATTTTAATTGTT
1 TAAAATATATTATTTTAATTGTT
7807025 TAAAATATA
1 TAAAATATA
7807034 ATAAATTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 32 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (23 bp):
TAAAATATATTATTTTAATTGTT
Found at i:7807041 original size:28 final size:27
Alignment explanation
Indices: 7806973--7807043 Score: 78
Period size: 23 Copynumber: 2.7 Consensus size: 27
7806963 CATATAAAAA
* *
7806973 TTAATATAAAATATATTATTTTAATTGT
1 TTAAAATATAATA-ATTATTTTAATTGT
7807001 TT-AAA-AT-AT-ATTATTTTAATTGT
1 TTAAAATATAATAATTATTTTAATTGT
7807024 TTAAAATATAATAAATTATT
1 TTAAAATATAAT-AATTATT
7807044 ATAAACATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
23 16 0.44
24 3 0.08
25 4 0.11
26 3 0.08
27 2 0.06
28 8 0.22
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (27 bp):
TTAAAATATAATAATTATTTTAATTGT
Found at i:7807057 original size:14 final size:13
Alignment explanation
Indices: 7807038--7807071 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
7807028 AATATAATAA
7807038 ATTATTATAAACAT
1 ATTATTATAAA-AT
7807052 ATTATTATAAAAT
1 ATTATTATAAAAT
7807065 A-TATTAT
1 ATTATTAT
7807072 TTTAACTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 6 0.30
13 3 0.15
14 11 0.55
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTATTATAAAAT
Found at i:7811103 original size:27 final size:22
Alignment explanation
Indices: 7811049--7811092 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
7811039 ACCTTCCACG
7811049 TCTCCACTCGGATCACTCCCCT
1 TCTCCACTCGGATCACTCCCCT
7811071 TCTCCACTCGGATCACTCCCCT
1 TCTCCACTCGGATCACTCCCCT
7811093 CGTCTACTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.50, G:0.09, T:0.27
Consensus pattern (22 bp):
TCTCCACTCGGATCACTCCCCT
Found at i:7811792 original size:43 final size:43
Alignment explanation
Indices: 7811744--7811831 Score: 158
Period size: 43 Copynumber: 2.0 Consensus size: 43
7811734 TTCCGAAGTC
7811744 CCCTCCTTAACTTGGTACGCTCAGCTTTCGAAACAGGATAGTT
1 CCCTCCTTAACTTGGTACGCTCAGCTTTCGAAACAGGATAGTT
* *
7811787 CCCTCCTTAACTTGGTACGCTCAGCTTTTGAAACAGGTTAGTT
1 CCCTCCTTAACTTGGTACGCTCAGCTTTCGAAACAGGATAGTT
7811830 CC
1 CC
7811832 TTGCTGAGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (43 bp):
CCCTCCTTAACTTGGTACGCTCAGCTTTCGAAACAGGATAGTT
Found at i:7813188 original size:30 final size:30
Alignment explanation
Indices: 7813148--7813215 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 30
7813138 TTAGTCCTTA
* * * *
7813148 AGCTTTAACTATTAATGCCCTAGCTCATTT
1 AGCTTCAACTATAAATACCCTAACTCATTT
*
7813178 AGCTTCAACTATAAATATCCTAACTCATTT
1 AGCTTCAACTATAAATACCCTAACTCATTT
7813208 AGCTTCAA
1 AGCTTCAA
7813216 AATCATCCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.37
Consensus pattern (30 bp):
AGCTTCAACTATAAATACCCTAACTCATTT
Found at i:7816567 original size:21 final size:22
Alignment explanation
Indices: 7816526--7816568 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7816516 CATTATTTTA
* *
7816526 TTGTTGTATGTTGATGACATGC
1 TTGTTGTAGGTTCATGACATGC
7816548 TTGTTGTAGGTTCA-GACATGC
1 TTGTTGTAGGTTCATGACATGC
7816569 AAGAGATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.19, C:0.12, G:0.28, T:0.42
Consensus pattern (22 bp):
TTGTTGTAGGTTCATGACATGC
Found at i:7818987 original size:14 final size:14
Alignment explanation
Indices: 7818964--7818998 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
7818954 CCTTTGTAAC
7818964 AAAA-AAATAAATA
1 AAAATAAATAAATA
*
7818977 ATAATAAATAAATA
1 AAAATAAATAAATA
7818991 AAAATAAA
1 AAAATAAA
7818999 AATCGATACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
13 3 0.16
14 16 0.84
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
AAAATAAATAAATA
Found at i:7821649 original size:84 final size:84
Alignment explanation
Indices: 7821555--7822933 Score: 1476
Period size: 84 Copynumber: 16.7 Consensus size: 84
7821545 ATGAAATCGG
* * * * * * *
7821555 ACTCGGAGGTCTTTGGTTGGCATATAGCCCTTCTCGACTTAAGCTATACTCCAAATGATGTGCCT
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCT
*
7821620 TGGAGGTGAGCGTAGTCGA
66 TGGAGCTGAGCGTAGTCGA
* * * * * *
7821639 ACTCGAAGGTCTTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCC
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATG-CC
* * *
7821703 TCGAAGCTGAGCGTAATCGA
65 TTGGAGCTGAGCGTAGTCGA
* *
7821723 ACTCGAAGGTC--T--TTGGCAGATAACCCTTCTCGACTTAAGTTATGTTGCAAATGATGTGCCT
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCT
7821784 TGGAGCTGAGCGTAGTCGA
66 TGGAGCTGAGCGTAGTCGA
* * * * * * * *
7821803 ACTTGAAGGTCTTTGG-TGACATATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCC
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATG-CC
* * * * *
7821867 TCGAAGATGA-CTGTAATCAA
65 TTGGAGCTGAGC-GTAGTCGA
* * * *
7821887 ACTCGAAGGTC--T--TTGGCAGATAGCCCCTCTTGATTTAAGTTATGCTGCAAATGATATGCCT
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCT
*
7821948 TGGAGCTGAGCTTAGTCGA
66 TGGAGCTGAGCGTAGTCGA
* * * *
7821967 ACTCGAAGGTCTTT-GTTGGTAGATAACCCTTCTTGACTTGAGTTATGCTGCAAATGATGTGCCC
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATG-CC
* * * *
7822031 TCGAAGCTGAGTGTAATCGA
65 TTGGAGCTGAGCGTAGTCGA
* * * *
7822051 ACTCGAGGGTC--T--TTGGCAGATTACCCTTCTCGACTTAAGCTACT-CTGCAAATGATGTGCC
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTA-TGCTGCAAATGATATGCC
7822111 TTGGAGCTGAGCGTAGTCGA
65 TTGGAGCTGAGCGTAGTCGA
* * * * * *
7822131 ACTCGAAGGTCTTTGGTTGGTAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATATGTCT
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCT
*
7822196 TAGAGCTGAGCGTAGTCGA
66 TGGAGCTGAGCGTAGTCGA
* *
7822215 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGATTTAAGTTATACTGCAAATGATATGCCT
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCT
*
7822280 TGGAGCTGAGCATAGTCGA
66 TGGAGCTGAGCGTAGTCGA
* * * * * * *
7822299 TA-TCGAAGGTATTTTGG-TGACAGATAACCATTCTAGCCTTGAGTTATGCTGTAAATGATATGC
1 -ACTCGAAGGT-CTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATG-
* * * *
7822362 CCTCGAAGCTGAGTGTAATCGA
63 CCTTGGAGCTGAGCGTAGTCGA
* * *
7822384 ACTCGAGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCT
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCT
7822445 TGGAGCTGAGCGTAGTCGA
66 TGGAGCTGAGCGTAGTCGA
* * *
7822464 ACTCGAAGGTCTTT-GTTGGCAGATAACCCTTCTTGACTTGAGTTATGCTGCAAATGATGTGCCC
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATG-CC
* * *
7822528 TTGAAGCTGAGTGTAATCGA
65 TTGGAGCTGAGCGTAGTCGA
* * * *
7822548 ACTCGAGGGTC--T--TTGGCAGATATCCCTTCTCGACTTAAGCTACT-CTGCAAATGATGTGCC
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTA-TGCTGCAAATGATATGCC
7822608 TTGGAGCTGAGCGTAGTCGA
65 TTGGAGCTGAGCGTAGTCGA
* * * * *
7822628 ACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTGAGTTATACTGCAAATGATATGCCT
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCT
*
7822693 TGGAGCTGGGCGTAGTCGA
66 TGGAGCTGAGCGTAGTCGA
* *
7822712 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGATTTAAGTTATACTGCAAATGATATGCCT
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCT
7822777 TGGAGCTGAGCGTAGTCGA
66 TGGAGCTGAGCGTAGTCGA
* * * * * *
7822796 ACTCGAAGGTCTTTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATATGCC
1 ACTCGAAGGTC-TTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATG-C
* * * *
7822860 CTCGAAGCTGAGTGTAATCGA
64 CTTGGAGCTGAGCGTAGTCGA
* * *
7822881 ACTCGAGGGTC--T--TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATG
1 ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATG
7822934 TTGTCTTAAA
Statistics
Matches: 1080, Mismatches: 177, Indels: 79
0.81 0.13 0.06
Matches are distributed among these distances:
80 138 0.13
81 223 0.21
82 13 0.01
83 157 0.15
84 486 0.45
85 63 0.06
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (84 bp):
ACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATATGCCT
TGGAGCTGAGCGTAGTCGA
Found at i:7821776 original size:164 final size:164
Alignment explanation
Indices: 7821571--7822933 Score: 1865
Period size: 164 Copynumber: 8.2 Consensus size: 164
7821561 AGGTCTTTGG
* * * * * *
7821571 TTGGCATATAGCCCTTCTCGACTTAAGCTATACTCCAAATGATGTGCCTTGGAGGTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
* *
7821636 CGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGC
66 CGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATATGC
7821701 CCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCT
131 CCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCT
* * *
7821735 TTGGCAGATAACCCTTCTCGACTTAAGTTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
* * * *
7821800 CGAACTTGAAGGTCTTTGGTGACATATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGC
66 CGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATATGC
* *
7821865 CCTCGAAGATGA-CTGTAATCAAACTCGAAGGTCT
131 CCTCGAAGCTGAGC-GTAATCGAACTCGAAGGTCT
* * * * * *
7821899 TTGGCAGATAGCCCCTCTTGATTTAAGTTATGCTGCAAATGATATGCCTTGGAGCTGAGCTTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
* ** * * *
7821964 CGAACTCGAAGGTCTTTGTTGGTAGATAACCCTTCTTGACTTGAGTTATGCTGCAAATGATGTGC
66 CGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATATGC
* *
7822029 CCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCT
131 CCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCT
* *
7822063 TTGGCAGATTACCCTTCTCGACTTAAGCTACT-CTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
1 TTGGCAGATAACCCTTCTCGACTTAAGCTA-TGCTGCAAATGATATGCCTTGGAGCTGAGCGTAG
** *
7822127 TCGAACTCGAAGGTCTTTGGTTGGTAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATAT
65 TCGAACTCGAAGGTCTTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATAT
* * * *
7822192 GTCTTAG-AGCTGAGCGTAGTCGAACTCGAAGGTCTTT
129 GCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTC--T
* * * *
7822229 GGTTGGCAGATAACCCTTCTCGATTTAAGTTATACTGCAAATGATATGCCTTGGAGCTGAGCATA
1 --TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTA
* * *
7822294 GTCGATA-TCGAAGGTATTTTGGTGACAGATAACCATTCTAGCCTTGAGTTATGCTGTAAATGAT
64 GTCGA-ACTCGAAGGT-CTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGAT
* *
7822358 ATGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCT
127 ATGCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCT
*
7822396 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
* * * * *
7822461 CGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTTGACTTGAGTTATGCTGCAAATGATGTGC
66 CGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATATGC
* * *
7822526 CCTTGAAGCTGAGTGTAATCGAACTCGAGGGTCT
131 CCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCT
* *
7822560 TTGGCAGATATCCCTTCTCGACTTAAGCTACT-CTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
1 TTGGCAGATAACCCTTCTCGACTTAAGCTA-TGCTGCAAATGATATGCCTTGGAGCTGAGCGTAG
* * *
7822624 TCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTGAGTTATACTGCAAATGATAT
65 TCGAACTCGAAGGTCTTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATAT
* * * *
7822689 G-CCTTGGAGCTGGGCGTAGTCGAACTCGAAGGTCTTT
129 GCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTC--T
* * *
7822726 GGTTGGCAGATAACCCTTCTCGATTTAAGTTATACTGCAAATGATATGCCTTGGAGCTGAGCGTA
1 --TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTA
* *
7822791 GTCGAACTCGAAGGTCTTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATA
64 GTCGAACTCGAAGGTC-TTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATA
* *
7822856 TGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCT
128 TGCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCT
*
7822893 TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATG
1 TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATG
7822934 TTGTCTTAAA
Statistics
Matches: 1065, Mismatches: 112, Indels: 43
0.87 0.09 0.04
Matches are distributed among these distances:
163 1 0.00
164 576 0.54
165 195 0.18
166 2 0.00
167 4 0.00
168 225 0.21
169 62 0.06
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (164 bp):
TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGAGCGTAGT
CGAACTCGAAGGTCTTTGGTGACAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATATGC
CCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCT
Found at i:7822409 original size:497 final size:496
Alignment explanation
Indices: 7821571--7822933 Score: 2265
Period size: 497 Copynumber: 2.8 Consensus size: 496
7821561 AGGTCTTTGG
* * * *
7821571 TTGGCATATAGCCCTTCTCGACTTAAGCTA-TACTCCAAATGATGTGCCTTGGAGGTGAGCGTAG
1 TTGGCAGATATCCCTTCTCGACTTAAGCTACT-CTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
* * *
7821635 TCGAACTCGAAGGTCTTTGG-TGACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGT
65 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATAT
* * * *
7821699 GCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTC--T--TTGGCAGATAACCCTTCTCGACTTA
130 GCCTTAG-AGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGATTTA
** * * * *
7821760 AGTTATGTTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTTGAAGGTCTTTGGTGACAT
194 AGTTATACTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTTTTTGGTGACAG
* * * *
7821825 ATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGATGACTGTAATCAAACT
259 ATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACT
* * * * *
7821890 CGAAGGTCTTTGGCAGATAGCCCCTCTTGATTTAAGTTATGCTGCAAATGATATGCCTTGGAGCT
324 CGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCT
* *
7821955 GAGCTTAGTCGAACTCGAAGGTCTTTGTTGGTAGATAACCCTTCTTGACTTGAGTTATGCTGCAA
389 GAGCGTAGTCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTTGACTTGAGTTATGCTGCAA
7822020 ATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCT
454 ATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCT
7822063 TTGGCAGAT-TACCCTTCTCGACTTAAGCTACTCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
1 TTGGCAGATAT-CCCTTCTCGACTTAAGCTACTCTGCAAATGATGTGCCTTGGAGCTGAGCGTAG
* *
7822127 TCGAACTCGAAGGTCTTTGGTTGGTAGATAACCCTTCTAGCCTTGAGTTATGTTGCAAATGATAT
65 TCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATAT
*
7822192 GTCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGATTTAA
130 GCCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGATTTAA
*
7822257 GTTATACTGCAAATGATATGCCTTGGAGCTGAGCATAGTCGATA-TCGAAGGTATTTTGGTGACA
195 GTTATACTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGA-ACTCGAAGGT-TTTTGGTGACA
*
7822321 GATAACCATTCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAAC
258 GATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAAC
7822386 TCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGC
323 TCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGC
7822451 TGAGCGTAGTCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTTGACTTGAGTTATGCTGCA
388 TGAGCGTAGTCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTTGACTTGAGTTATGCTGCA
*
7822516 AATGATGTGCCCTTGAAGCTGAGTGTAATCGAACTCGAGGGTCT
453 AATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCT
7822560 TTGGCAGATATCCCTTCTCGACTTAAGCTACTCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
1 TTGGCAGATATCCCTTCTCGACTTAAGCTACTCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
* *
7822625 CGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTGAGTTATACTGCAAATGATATG
66 CGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATATG
* *
7822690 CCTTGGAGCTGGGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGATTTAAG
131 CCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGATTTAAG
7822755 TTATACTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTTGGTGACAGA
196 TTATACTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGT-TTTTGGTGACAGA
*
7822820 TAACCCTTCTAGCCTTGAGTTATGTTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTC
260 TAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTC
7822885 GAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATG
325 GAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATG
7822934 TTGTCTTAAA
Statistics
Matches: 815, Mismatches: 45, Indels: 17
0.93 0.05 0.02
Matches are distributed among these distances:
492 103 0.13
493 44 0.05
494 1 0.00
496 71 0.09
497 595 0.73
498 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (496 bp):
TTGGCAGATATCCCTTCTCGACTTAAGCTACTCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGT
CGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATATG
CCTTAGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGATTTAAG
TTATACTGCAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTTTTTGGTGACAGAT
AACCCTTCTAGCCTTGAGTTATGCTGTAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCG
AGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATATGCCTTGGAGCTGA
GCGTAGTCGAACTCGAAGGTCTTTGTTGGCAGATAACCCTTCTTGACTTGAGTTATGCTGCAAAT
GATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCT
Found at i:7828232 original size:13 final size:12
Alignment explanation
Indices: 7828218--7828266 Score: 59
Period size: 11 Copynumber: 4.3 Consensus size: 12
7828208 AAAGTTAGTA
7828218 AAAAAAGAAAAT
1 AAAAAAGAAAAT
7828230 -AAAAA-AAAAT
1 AAAAAAGAAAAT
*
7828240 AATAAAGAAAAT
1 AAAAAAGAAAAT
*
7828252 AAAAAA-AAAGT
1 AAAAAAGAAAAT
7828263 AAAA
1 AAAA
7828267 GGGTTAGTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
10 5 0.16
11 17 0.53
12 10 0.31
ACGTcount: A:0.84, C:0.00, G:0.06, T:0.10
Consensus pattern (12 bp):
AAAAAAGAAAAT
Found at i:7828233 original size:10 final size:10
Alignment explanation
Indices: 7828220--7828267 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
7828210 AGTTAGTAAA
7828220 AAAAGAAAAT
1 AAAAGAAAAT
*
7828230 AAAAAAAAAT
1 AAAAGAAAAT
7828240 AATAAAGAAAAT
1 -A-AAAGAAAAT
*
7828252 AAAAAAAAAGT
1 AAAAGAAAA-T
7828263 AAAAG
1 AAAAG
7828268 GGTTAGTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
10 16 0.52
11 7 0.23
12 8 0.26
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.10
Consensus pattern (10 bp):
AAAAGAAAAT
Found at i:7828289 original size:5 final size:5
Alignment explanation
Indices: 7828279--7828321 Score: 59
Period size: 5 Copynumber: 8.2 Consensus size: 5
7828269 GTTAGTTAAA
*
7828279 AAAAT AAAAT AAGAAT AAACT AAAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AA-AAT AAAAT -AAAAT AAAAT AAAAT AAAAT A
7828322 TTTAAACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 25 0.74
6 9 0.26
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:7828297 original size:11 final size:10
Alignment explanation
Indices: 7828279--7828321 Score: 59
Period size: 11 Copynumber: 4.1 Consensus size: 10
7828269 GTTAGTTAAA
7828279 AAAATAAAAT
1 AAAATAAAAT
*
7828289 AAGAATAAACT
1 AA-AATAAAAT
7828300 AAAAATAAAAT
1 -AAAATAAAAT
7828311 AAAATAAAAT
1 AAAATAAAAT
7828321 A
1 A
7828322 TTTAAACTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 13 0.45
11 14 0.48
12 2 0.07
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:7828303 original size:22 final size:21
Alignment explanation
Indices: 7828278--7828318 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
7828268 GGTTAGTTAA
7828278 AAAAATAAAATAAGAATAAACT
1 AAAAATAAAATAA-AATAAACT
7828300 AAAAATAAAATAAAATAAA
1 AAAAATAAAATAAAATAAA
7828319 ATATTTAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.17
Consensus pattern (21 bp):
AAAAATAAAATAAAATAAACT
Found at i:7828311 original size:16 final size:17
Alignment explanation
Indices: 7828279--7828319 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
7828269 GTTAGTTAAA
7828279 AAAAT-AAAATAAGAAT
1 AAAATAAAAATAAGAAT
*
7828295 AAACTAAAAATAA-AAT
1 AAAATAAAAATAAGAAT
7828311 AAAATAAAA
1 AAAATAAAA
7828320 TATTTAAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.17
Consensus pattern (17 bp):
AAAATAAAAATAAGAAT
Found at i:7831104 original size:9 final size:9
Alignment explanation
Indices: 7831090--7831118 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
7831080 CGTGCAATGA
7831090 CAATTTTAT
1 CAATTTTAT
7831099 CAATTTTAT
1 CAATTTTAT
7831108 CAATTTTAT
1 CAATTTTAT
7831117 CA
1 CA
7831119 TTTATTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (9 bp):
CAATTTTAT
Found at i:7831458 original size:28 final size:28
Alignment explanation
Indices: 7831418--7831479 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
7831408 AATCAAACGA
* *
7831418 CCTTAGTGGTTAAAGGGATGATTATCAT
1 CCTTAGTAGTTAAAAGGATGATTATCAT
*
7831446 CCTTAGTAGTTAAAAGGATGATTATTAT
1 CCTTAGTAGTTAAAAGGATGATTATCAT
*
7831474 CTTTAG
1 CCTTAG
7831480 ATATTCCAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.39
Consensus pattern (28 bp):
CCTTAGTAGTTAAAAGGATGATTATCAT
Found at i:7840717 original size:21 final size:22
Alignment explanation
Indices: 7840687--7840742 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
7840677 GAATGTAAGA
*
7840687 GAGTAACGATACTCA-TCAGGG
1 GAGTATCGATACTCATTCAGGG
* *
7840708 GAGTATCGATACT-ATTCATGT
1 GAGTATCGATACTCATTCAGGG
7840729 G-GTATCGATACTCA
1 GAGTATCGATACTCA
7840743 GGAATGAGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (22 bp):
GAGTATCGATACTCATTCAGGG
Found at i:7841932 original size:20 final size:20
Alignment explanation
Indices: 7841909--7841976 Score: 118
Period size: 20 Copynumber: 3.4 Consensus size: 20
7841899 AGTGATGTAC
*
7841909 CGATACACTACATGATGCAT
1 CGATGCACTACATGATGCAT
7841929 CGATGCACTACATGATGCAT
1 CGATGCACTACATGATGCAT
7841949 CGATGCACTACATGATGCAT
1 CGATGCACTACATGATGCAT
*
7841969 TGATGCAC
1 CGATGCAC
7841977 ACCCATTTCG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (20 bp):
CGATGCACTACATGATGCAT
Found at i:7841947 original size:12 final size:12
Alignment explanation
Indices: 7841914--7841967 Score: 52
Period size: 12 Copynumber: 5.2 Consensus size: 12
7841904 TGTACCGATA
7841914 CACTACATGATG
1 CACTACATGATG
7841926 CA-T-C--GATG
1 CACTACATGATG
7841934 CACTACATGATG
1 CACTACATGATG
7841946 CA-T-C--GATG
1 CACTACATGATG
7841954 CACTACATGATG
1 CACTACATGATG
7841966 CA
1 CA
7841968 TTGATGCACA
Statistics
Matches: 34, Mismatches: 0, Indels: 16
0.68 0.00 0.32
Matches are distributed among these distances:
8 12 0.35
9 2 0.06
10 4 0.12
11 2 0.06
12 14 0.41
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (12 bp):
CACTACATGATG
Found at i:7851433 original size:21 final size:21
Alignment explanation
Indices: 7851391--7851433 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7851381 TTTCTAGGCT
* *
7851391 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
*
7851412 AGGGGAATCGATACCCCCTCA
1 AGGGGAATCGATACCCACTCA
7851433 A
1 A
7851434 CGAATATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:7852204 original size:103 final size:103
Alignment explanation
Indices: 7851979--7852196 Score: 427
Period size: 103 Copynumber: 2.1 Consensus size: 103
7851969 GTAGAGGGTC
7851979 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGATCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGATCTGGTGAGACACATAC
7852044 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
*
7852082 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGATCTGGTGAGACACATAC
7852147 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
7852185 TATGTGGTCCTT
1 TATGTGGTCCTT
7852197 ATGGACATTA
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
103 114 1.00
ACGTcount: A:0.25, C:0.13, G:0.25, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGATCTGGTGAGACACATAC
TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
Found at i:7852246 original size:23 final size:23
Alignment explanation
Indices: 7852213--7852275 Score: 92
Period size: 23 Copynumber: 2.7 Consensus size: 23
7852203 ATTATTATAT
7852213 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
7852236 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
7852259 GGCACTTA-GGTGCAATT
1 GGCAC-TACGGTGCAATT
7852276 ATATGAGCTG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 35 0.97
24 1 0.03
ACGTcount: A:0.21, C:0.27, G:0.27, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:7858368 original size:21 final size:21
Alignment explanation
Indices: 7858326--7858368 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7858316 TTTCTAGGCT
* *
7858326 AGGGGAATCGGTACCCATTCA
1 AGGGGAATCGATACCCACTCA
*
7858347 AGGGGAATCGATACCCCCTCA
1 AGGGGAATCGATACCCACTCA
7858368 A
1 A
7858369 CGAATATGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.16
Consensus pattern (21 bp):
AGGGGAATCGATACCCACTCA
Found at i:7858420 original size:20 final size:20
Alignment explanation
Indices: 7858395--7858432 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7858385 GAATGCTAGA
*
7858395 GGGGAATCGATACCCCCAGG
1 GGGGAACCGATACCCCCAGG
*
7858415 GGGGAACCGATTCCCCCA
1 GGGGAACCGATACCCCCA
7858433 TAATGAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.11
Consensus pattern (20 bp):
GGGGAACCGATACCCCCAGG
Found at i:7859138 original size:103 final size:103
Alignment explanation
Indices: 7858913--7859130 Score: 418
Period size: 103 Copynumber: 2.1 Consensus size: 103
7858903 GTAGAGGGTC
*
7858913 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACATGTGTGAGATCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTAGAACATGTGTGAGATCTGGTGAGACACATAC
7858978 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
*
7859016 TATGTGGTCCTTCGGGACATATATGTATTCTTTAGAACATGTGTGAGGTCTGGTGAGACACATAC
1 TATGTGGTCCTTCGGGACATATATGTATTCTTTAGAACATGTGTGAGATCTGGTGAGACACATAC
7859081 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
7859119 TATGTGGTCCTT
1 TATGTGGTCCTT
7859131 ATAGACATTA
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 113 1.00
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGGGACATATATGTATTCTTTAGAACATGTGTGAGATCTGGTGAGACACATAC
TTGATCCTTGGTATATGTATATGATTCTTAAGGAATGA
Found at i:7859172 original size:22 final size:22
Alignment explanation
Indices: 7859147--7859204 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 22
7859137 ATTATTATAT
7859147 GGCACTACGGTGCATTCTACGC
1 GGCACTACGGTGCATTCTACGC
*
7859169 GGCACT-CGGTGCAATTCTACGT
1 GGCACTACGGTGC-ATTCTACGC
7859191 GGCACTTA-GGTGCA
1 GGCAC-TACGGTGCA
7859205 ATTATATGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 6 0.19
22 20 0.62
23 6 0.19
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (22 bp):
GGCACTACGGTGCATTCTACGC
Found at i:7860701 original size:23 final size:22
Alignment explanation
Indices: 7860671--7860771 Score: 109
Period size: 23 Copynumber: 4.6 Consensus size: 22
7860661 ACACTAGACA
7860671 GTGCATCGATGCATCCCTTGAAT
1 GTGCATCGATGCA-CCCTTGAAT
* * *
7860694 GTGCATCGATACA-CCATGAAG
1 GTGCATCGATGCACCCTTGAAT
*
7860715 GTGCATCGATGCATTCCTTGAAT
1 GTGCATCGATGCA-CCCTTGAAT
* *
7860738 GTGCATCGATGCACTC-TG-CT
1 GTGCATCGATGCACCCTTGAAT
7860758 GTGCATCGATGCAC
1 GTGCATCGATGCAC
7860772 TCTGCTGTAC
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
20 15 0.22
21 20 0.30
22 1 0.01
23 31 0.46
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.28
Consensus pattern (22 bp):
GTGCATCGATGCACCCTTGAAT
Found at i:7860727 original size:44 final size:43
Alignment explanation
Indices: 7860652--7860770 Score: 152
Period size: 44 Copynumber: 2.7 Consensus size: 43
7860642 TTGTGCACTA
*
7860652 TGCATCGATACACTAGACAGTGCATCGATGCATCCCTTGAATG
1 TGCATCGATACACCAGACAGTGCATCGATGCATCCCTTGAATG
*
7860695 TGCATCGATACACCATGA-AGGTGCATCGATGCATTCCTTGAATG
1 TGCATCGATACACCA-GACA-GTGCATCGATGCATCCCTTGAATG
* * *
7860739 TGCATCGATGCACTCTG-CTGTGCATCGATGCA
1 TGCATCGATACAC-CAGACAGTGCATCGATGCA
7860771 CTCTGCTGTA
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
43 28 0.42
44 38 0.57
45 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (43 bp):
TGCATCGATACACCAGACAGTGCATCGATGCATCCCTTGAATG
Found at i:7860762 original size:20 final size:20
Alignment explanation
Indices: 7860737--7860793 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
7860727 ATTCCTTGAA
7860737 TGTGCATCGATGCACTCTGC
1 TGTGCATCGATGCACTCTGC
7860757 TGTGCATCGATGCACTCTGC
1 TGTGCATCGATGCACTCTGC
* *
7860777 TGTACATCGATACACTC
1 TGTGCATCGATGCACTC
7860794 GTCGGGTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.19, C:0.30, G:0.21, T:0.30
Consensus pattern (20 bp):
TGTGCATCGATGCACTCTGC
Found at i:7862698 original size:17 final size:17
Alignment explanation
Indices: 7862676--7862714 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
7862666 TAGGATTTAT
7862676 TGTTTTAACATTTTGGA
1 TGTTTTAACATTTTGGA
* *
7862693 TGTTTTTAGATTTTGGA
1 TGTTTTAACATTTTGGA
7862710 TGTTT
1 TGTTT
7862715 GAATTGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.18, C:0.03, G:0.21, T:0.59
Consensus pattern (17 bp):
TGTTTTAACATTTTGGA
Found at i:7863543 original size:64 final size:64
Alignment explanation
Indices: 7863407--7863549 Score: 171
Period size: 65 Copynumber: 2.2 Consensus size: 64
7863397 AATACATTTT
* * * * *
7863407 GTGTACCAATGCACAAGCCATACATCGATGCACTATTGAAGATTTTGAAACATCGAATGCATTTT
1 GTGTACCGATGCACAAACCATACATCGATGCACTACTG-AGATTTTGAAACATCGAATGCAATTA
* * * * *
7863472 GTGTACCGATGCACAAACCATGCATCGATGCACTCCTG-GCTCTTTGAAACATTGAATGTAATTA
1 GTGTACCGATGCACAAACCATACATCGATGCACTACTGAGAT-TTTGAAACATCGAATGCAATTA
7863536 GTGTACCGATGCAC
1 GTGTACCGATGCAC
7863550 CCCTAGTGTA
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
63 2 0.03
64 32 0.48
65 33 0.49
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (64 bp):
GTGTACCGATGCACAAACCATACATCGATGCACTACTGAGATTTTGAAACATCGAATGCAATTA
Found at i:7869590 original size:15 final size:16
Alignment explanation
Indices: 7869570--7869599 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7869560 CCAATCTAAT
7869570 TTCTCTT-CTCTCTTG
1 TTCTCTTCCTCTCTTG
7869585 TTCTCTTCCTCTCTT
1 TTCTCTTCCTCTCTT
7869600 CAAAGGTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.00, C:0.37, G:0.03, T:0.60
Consensus pattern (16 bp):
TTCTCTTCCTCTCTTG
Found at i:7873215 original size:23 final size:23
Alignment explanation
Indices: 7873179--7873243 Score: 69
Period size: 24 Copynumber: 2.8 Consensus size: 23
7873169 GAAATATTGC
*
7873179 TTTTGTTTACTTTTATGACACAA
1 TTTTCTTTACTTTTATGACACAA
* *
7873202 TTATTCTTTATTTTTATGACACGA
1 TT-TTCTTTACTTTTATGACACAA
*
7873226 TTTTGTTTA-TTGTTATGA
1 TTTTCTTTACTT-TTATGA
7873244 TAGTTTAGTG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
22 2 0.06
23 14 0.39
24 20 0.56
ACGTcount: A:0.23, C:0.09, G:0.11, T:0.57
Consensus pattern (23 bp):
TTTTCTTTACTTTTATGACACAA
Found at i:7873557 original size:15 final size:14
Alignment explanation
Indices: 7873532--7873561 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
7873522 TCATGTATGG
7873532 TTTAAATTTTTAAA
1 TTTAAATTTTTAAA
7873546 TTTAATATTTTTAAA
1 TTTAA-ATTTTTAAA
7873561 T
1 T
7873562 ATTTATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTAAATTTTTAAA
Found at i:7879579 original size:21 final size:21
Alignment explanation
Indices: 7879546--7879636 Score: 74
Period size: 21 Copynumber: 4.3 Consensus size: 21
7879536 AATTGTCCCG
* *
7879546 AAGGATCATATATATGTTCCA
1 AAGGACCAAATATATGTTCCA
* *
7879567 AAGGACTAAATATATGTCCCA
1 AAGGACCAAATATATGTTCCA
* **
7879588 AATGACCGCATATATGTTCCA
1 AAGGACCAAATATATGTTCCA
* * * * *
7879609 AATGATCACATATATGTCCCG
1 AAGGACCAAATATATGTTCCA
7879630 AAGGACC
1 AAGGACC
7879637 GCGTAGAACC
Statistics
Matches: 55, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.26
Consensus pattern (21 bp):
AAGGACCAAATATATGTTCCA
Found at i:7879585 original size:42 final size:42
Alignment explanation
Indices: 7879494--7879636 Score: 119
Period size: 42 Copynumber: 3.4 Consensus size: 42
7879484 GTCATATAAA
* * * ** *
7879494 ATGTCCCGAAGGACCACATATAT-ATCTCGAAGGACCACGTAGA
1 ATGTCCCGAAGGACCACATATATGTTC-CAAAGGATCAAATA-T
* *
7879537 ATTGTCCCGAAGGATCATATATATGTTCCAAAGGA-CTAAATAT
1 A-TGTCCCGAAGGACCACATATATGTTCCAAAGGATC-AAATAT
* * * * *
7879580 ATGTCCCAAATGACCGCATATATGTTCCAAATGATCACATAT
1 ATGTCCCGAAGGACCACATATATGTTCCAAAGGATCAAATAT
7879622 ATGTCCCGAAGGACC
1 ATGTCCCGAAGGACC
7879637 GCGTAGAACC
Statistics
Matches: 80, Mismatches: 16, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
42 45 0.56
43 4 0.05
44 29 0.36
45 2 0.03
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGTCCCGAAGGACCACATATATGTTCCAAAGGATCAAATAT
Found at i:7879637 original size:42 final size:42
Alignment explanation
Indices: 7879539--7879638 Score: 121
Period size: 42 Copynumber: 2.4 Consensus size: 42
7879529 CACGTAGAAT
* **
7879539 TGTCCCGAAGGATCATATATATGTTCCAAAGGACTAAATATA
1 TGTCCCGAAGGACCGCATATATGTTCCAAAGGACTAAATATA
* * * *
7879581 TGTCCCAAATGACCGCATATATGTTCCAAATGA-TCACATATA
1 TGTCCCGAAGGACCGCATATATGTTCCAAAGGACT-AAATATA
7879623 TGTCCCGAAGGACCGC
1 TGTCCCGAAGGACCGC
7879639 GTAGAACCCT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
41 1 0.02
42 47 0.98
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (42 bp):
TGTCCCGAAGGACCGCATATATGTTCCAAAGGACTAAATATA
Found at i:7881125 original size:29 final size:29
Alignment explanation
Indices: 7881092--7881157 Score: 132
Period size: 29 Copynumber: 2.3 Consensus size: 29
7881082 TCAAGTCCCT
7881092 AAAATTTTCAATTTATCTAATTTGATCAC
1 AAAATTTTCAATTTATCTAATTTGATCAC
7881121 AAAATTTTCAATTTATCTAATTTGATCAC
1 AAAATTTTCAATTTATCTAATTTGATCAC
7881150 AAAATTTT
1 AAAATTTT
7881158 AAAATATTTC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.39, C:0.12, G:0.03, T:0.45
Consensus pattern (29 bp):
AAAATTTTCAATTTATCTAATTTGATCAC
Found at i:7881174 original size:29 final size:29
Alignment explanation
Indices: 7881092--7881178 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
7881082 TCAAGTCCCT
* *
7881092 AAAATTTTCAATTTATCTAATTTGATCAC
1 AAAATTTTAAATTTATCTAAATTGATCAC
* *
7881121 AAAATTTTCAATTTATCTAATTTGATCAC
1 AAAATTTTAAATTTATCTAAATTGATCAC
7881150 AAAATTTTAAAATATT-TC-AAATTGATCAC
1 AAAATTTT-AAAT-TTATCTAAATTGATCAC
7881179 TAAACCGGTG
Statistics
Matches: 54, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
29 47 0.87
30 5 0.09
31 2 0.04
ACGTcount: A:0.41, C:0.13, G:0.03, T:0.43
Consensus pattern (29 bp):
AAAATTTTAAATTTATCTAAATTGATCAC
Found at i:7889493 original size:15 final size:15
Alignment explanation
Indices: 7889473--7889508 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
7889463 AAGCCAGCAT
7889473 CAACAGCAGCA-ATTG
1 CAACAGCAGCAGA-TG
7889488 CAACAGCAGCAGATG
1 CAACAGCAGCAGATG
7889503 CAACAG
1 CAACAG
7889509 ATGCCACAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 19 0.95
16 1 0.05
ACGTcount: A:0.42, C:0.28, G:0.22, T:0.08
Consensus pattern (15 bp):
CAACAGCAGCAGATG
Found at i:7889499 original size:18 final size:18
Alignment explanation
Indices: 7889476--7889553 Score: 60
Period size: 18 Copynumber: 4.5 Consensus size: 18
7889466 CCAGCATCAA
7889476 CAGCAGCAATTGCAACAG
1 CAGCAGCAATTGCAACAG
7889494 CAGCAG--A-TGCAACAG
1 CAGCAGCAATTGCAACAG
*
7889509 -ATGCCA-CAGCTT-CAACAG
1 CA-G-CAGCA-ATTGCAACAG
* *
7889527 CAGCAGCAACTGCAACAA
1 CAGCAGCAATTGCAACAG
7889545 CAGCAGCAA
1 CAGCAGCAA
7889554 CCACAGCAGC
Statistics
Matches: 47, Mismatches: 4, Indels: 18
0.68 0.06 0.26
Matches are distributed among these distances:
14 1 0.02
15 9 0.19
16 3 0.06
17 3 0.06
18 29 0.62
19 2 0.04
ACGTcount: A:0.40, C:0.31, G:0.21, T:0.09
Consensus pattern (18 bp):
CAGCAGCAATTGCAACAG
Found at i:7889614 original size:18 final size:18
Alignment explanation
Indices: 7889605--7889656 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
7889595 GCTGCAACAG
* *
7889605 CAGCAGCAGCAACAACAA
1 CAGCAGCAGCAGCAGCAA
7889623 CAGCAGCAGCAGCAGCAA
1 CAGCAGCAGCAGCAGCAA
*
7889641 CAACAGCAGCAGCAGC
1 CAGCAGCAGCAGCAGC
7889657 TCTCCCAGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.42, C:0.35, G:0.23, T:0.00
Consensus pattern (18 bp):
CAGCAGCAGCAGCAGCAA
Found at i:7889625 original size:21 final size:21
Alignment explanation
Indices: 7889599--7889656 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
7889589 CCCTCAGCTG
7889599 CAACAGCAGCAGCAGCAACAA
1 CAACAGCAGCAGCAGCAACAA
*
7889620 CAACAGCAGCAGCAGCAGCAA
1 CAACAGCAGCAGCAGCAACAA
7889641 CAACAGCAGCAGCAGC
1 CAACAGCAGCAGCAGC
7889657 TCTCCCAGCT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.43, C:0.34, G:0.22, T:0.00
Consensus pattern (21 bp):
CAACAGCAGCAGCAGCAACAA
Found at i:7889675 original size:3 final size:3
Alignment explanation
Indices: 7889602--7889656 Score: 65
Period size: 3 Copynumber: 18.3 Consensus size: 3
7889592 TCAGCTGCAA
* * * * *
7889602 CAG CAG CAG CAG CAA CAA CAA CAG CAG CAG CAG CAG CAA CAA CAG CAG
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG
7889650 CAG CAG C
1 CAG CAG C
7889657 TCTCCCAGCT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.42, C:0.35, G:0.24, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:7895257 original size:21 final size:21
Alignment explanation
Indices: 7895228--7895267 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7895218 GATTATGGTG
*
7895228 TTATGATTTAGGGTTTAAGAT
1 TTATAATTTAGGGTTTAAGAT
*
7895249 TTATAATTTATGGTTTAAG
1 TTATAATTTAGGGTTTAAG
7895268 TTAAGGGTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (21 bp):
TTATAATTTAGGGTTTAAGAT
Found at i:7897223 original size:182 final size:181
Alignment explanation
Indices: 7896933--7897441 Score: 876
Period size: 182 Copynumber: 2.8 Consensus size: 181
7896923 TATAAATGAA
*
7896933 AAATGTATCGATCCATAGCAATATAACAGGTAAAAATATGATAAAACCGGTGTCATTATGATAAA
1 AAATGTATCGATCCATAGCAATATAACAGGTAATAATATGATAAAA-CGGTGTCATTATGATAAA
7896998 ACCGGTAAACCGCTACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTTTTG
65 ACCGGTAAACCGCTACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTTTTG
*
7897063 TAATTTAAAAGAGAAGAAGTTATAGCGCCTATAAAGTGTCGATACTTTATAC
130 TAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGATACTTTATAC
*
7897115 AAATGTATAGATCCATAGCAATATAACAGGTAATAATATGATAAAATCGGTGTCATTATGATAAA
1 AAATGTATCGATCCATAGCAATATAACAGGTAATAATATGATAAAA-CGGTGTCATTATGATAAA
7897180 ACCGGTAAACCGCTACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTTTTG
65 ACCGGTAAACCGCTACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTTTTG
7897245 TAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGATACTTTATAC
130 TAATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGATACTTTATAC
* * * * *
7897297 AAATGTATCGATCTATATCAATATAACAGGTAATAATATGACAAAACAAGTCTCGA-TATGATAA
1 AAATGTATCGATCCATAGCAATATAACAGGTAATAATATGATAAAAC-GGTGTC-ATTATGATAA
** *
7897361 AACCGGTAAAAAGATACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTTTT
64 AACCGGTAAACCGCTACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTTTT
7897426 GTAATTTAAAAGAGAA
129 GTAATTTAAAAGAGAA
7897442 ACGAGTTGCA
Statistics
Matches: 312, Mismatches: 13, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
181 1 0.00
182 310 0.99
183 1 0.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.29
Consensus pattern (181 bp):
AAATGTATCGATCCATAGCAATATAACAGGTAATAATATGATAAAACGGTGTCATTATGATAAAA
CCGGTAAACCGCTACCGGATATATTGAAAGTGTCGATAAATTAATATAAGTATCGACACTTTTGT
AATTTAAAAGAGAAGAAGTTATAGCGCCTAAAAAGTGTCGATACTTTATAC
Found at i:7897691 original size:23 final size:23
Alignment explanation
Indices: 7897641--7897685 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
7897631 TGCCTATTTT
*
7897641 ATTATATAAGCGCTACCTATTAC
1 ATTATATAAGCGCTACCTAATAC
7897664 ATTATATAAGCGCTACCTAATA
1 ATTATATAAGCGCTACCTAATA
7897686 TGTTATTGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (23 bp):
ATTATATAAGCGCTACCTAATAC
Found at i:7898095 original size:2 final size:2
Alignment explanation
Indices: 7898088--7898124 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7898078 TGCTTTTGAT
7898088 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7898125 TCAATGTTCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7901519 original size:16 final size:17
Alignment explanation
Indices: 7901492--7901524 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
7901482 GAAAATAAAG
7901492 TAAAATTGAAAGAAAAA
1 TAAAATTGAAAGAAAAA
7901509 TAAAA-TGAAAGAAAAA
1 TAAAATTGAAAGAAAAA
7901525 CTTTTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.15
Consensus pattern (17 bp):
TAAAATTGAAAGAAAAA
Found at i:7911791 original size:23 final size:24
Alignment explanation
Indices: 7911764--7911816 Score: 99
Period size: 23 Copynumber: 2.2 Consensus size: 24
7911754 CAAACGGAAT
7911764 AATATTTTATATTGAAAT-AAAAA
1 AATATTTTATATTGAAATAAAAAA
7911787 AATATTTTATATTGAAATAAAAAA
1 AATATTTTATATTGAAATAAAAAA
7911811 AATATT
1 AATATT
7911817 ACACTTTCTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 18 0.62
24 11 0.38
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.40
Consensus pattern (24 bp):
AATATTTTATATTGAAATAAAAAA
Found at i:7914135 original size:20 final size:20
Alignment explanation
Indices: 7914110--7914147 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
7914100 ACTTGTTCGC
*
7914110 AAGACCTGTAAATCGGTTGA
1 AAGACCTGAAAATCGGTTGA
7914130 AAGACCTGAAAATCGGTT
1 AAGACCTGAAAATCGGTT
7914148 TCTAATCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.24
Consensus pattern (20 bp):
AAGACCTGAAAATCGGTTGA
Found at i:7916759 original size:173 final size:175
Alignment explanation
Indices: 7916554--7916900 Score: 664
Period size: 173 Copynumber: 2.0 Consensus size: 175
7916544 AAGATCATTT
7916554 TGGGCTCAAGTTGTTAGGGTTTAAATTATTTTAGGTTTGGGTCATTTCAGGTTTGAGTTGGATAT
1 TGGGCTCAAGTTGTTAGGGTTTAAATTATTTTAGGTTTGGGTCATTTCAGGTTTGAGTTGGATAT
7916619 GTTCATACCAAATTGGGTTCAAATATTCAGGAGTTGATAGATCTAATCAAGGC-AAAGAAAATGA
66 GTTCATACCAAATTGGGTTCAAATATTCAGGAGTTGATAGATCTAATCAAGGCAAAAGAAAATGA
7916683 -CAAGATA-TTGTACAAACAATAAAAAACCAAGATAGGTAAGAAAG
131 GCAAGATATTTGTACAAACAATAAAAAA-CAAGATAGGTAAGAAAG
7916727 TGGGCTCAAGTTGTTAGGGTTTAAATTATTTTAGGTTTGGGTCATTTCAGGTTTGAGTTGGATAT
1 TGGGCTCAAGTTGTTAGGGTTTAAATTATTTTAGGTTTGGGTCATTTCAGGTTTGAGTTGGATAT
7916792 GTTCATACCAAATTGGGTTCAAATATTCAGGAGTTGATAGATCTAATCAAGGCAAAAGAAAATGA
66 GTTCATACCAAATTGGGTTCAAATATTCAGGAGTTGATAGATCTAATCAAGGCAAAAGAAAATGA
7916857 GCAAGATATTTGTACAAACAATAAAAAACAAGATAGGTAAGAAA
131 GCAAGATATTTGTACAAACAATAAAAAACAAGATAGGTAAGAAA
7916901 AGATAATTAC
Statistics
Matches: 171, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
173 118 0.69
174 11 0.06
175 23 0.13
176 19 0.11
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.31
Consensus pattern (175 bp):
TGGGCTCAAGTTGTTAGGGTTTAAATTATTTTAGGTTTGGGTCATTTCAGGTTTGAGTTGGATAT
GTTCATACCAAATTGGGTTCAAATATTCAGGAGTTGATAGATCTAATCAAGGCAAAAGAAAATGA
GCAAGATATTTGTACAAACAATAAAAAACAAGATAGGTAAGAAAG
Found at i:7923677 original size:15 final size:15
Alignment explanation
Indices: 7923657--7923686 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7923647 CTTTCTCATA
7923657 GTTGTTGTTGGAATT
1 GTTGTTGTTGGAATT
*
7923672 GTTGTTGTTGTAATT
1 GTTGTTGTTGGAATT
7923687 ACAGCCTCGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.00, G:0.30, T:0.57
Consensus pattern (15 bp):
GTTGTTGTTGGAATT
Found at i:7926135 original size:60 final size:62
Alignment explanation
Indices: 7925994--7926136 Score: 155
Period size: 60 Copynumber: 2.3 Consensus size: 62
7925984 TAGTTCTCTA
* * * ** *
7925994 ACTATTAAAATCTATAAAATAGTCTTTCGAGACTATAAGACATTGTTTTGTTGAGTTTTTCG
1 ACTATTAAAATTTATAAAATGGTCTTTCGAGACTATAAGACATTATTTTGTTGAGTCCTCCG
* * * * **
7926056 ATTATTAAAAATTATAAAATGGTCTTTC-A-ATTATATGATGTTATTTTGTTGAGTCCTCCG
1 ACTATTAAAATTTATAAAATGGTCTTTCGAGACTATAAGACATTATTTTGTTGAGTCCTCCG
*
7926116 ACTATTAAAATTTACAAAATG
1 ACTATTAAAATTTATAAAATG
7926137 ATCACCCGAC
Statistics
Matches: 66, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
60 41 0.62
61 1 0.02
62 24 0.36
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (62 bp):
ACTATTAAAATTTATAAAATGGTCTTTCGAGACTATAAGACATTATTTTGTTGAGTCCTCCG
Found at i:7927099 original size:24 final size:23
Alignment explanation
Indices: 7927056--7927100 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
7927046 AAATAATTTT
* *
7927056 TGAAAATTGAAAATACAAATAAG
1 TGAAAATTGAAAAAAAAAATAAG
7927079 TGAAAATATGAAAAAAAAAATA
1 TGAAAAT-TGAAAAAAAAAATA
7927101 TTTTCAGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.67, C:0.02, G:0.11, T:0.20
Consensus pattern (23 bp):
TGAAAATTGAAAAAAAAAATAAG
Found at i:7927836 original size:437 final size:434
Alignment explanation
Indices: 7927000--7927881 Score: 1550
Period size: 437 Copynumber: 2.0 Consensus size: 434
7926990 TTTCCATCTT
* * *
7927000 TCTAACAAATATAAAACGTTAAAGAAAATATGTTTAGTTATTTGAAAAATAATTTTTGAAAATTG
1 TCTAAAAAACATAAAACGTTAAAGAAAATATGTTTAGTTATTTGAAAAATAAATTTTGAAAATTG
7927065 AAAATACAAATAAGTGAAAATATGAAAAAAAAAATATTTTCAGTATTTTCATTAAAATTGTTTTG
66 AAAATACAAATAAGTGAAAATATGAAAAAAAAAATATTTTCAGTATTTTCATTAAAATTGTTTTG
7927130 AAAATTTGAAAATAATGAAACATGATATATATATATATATATAAACACATATAAATCATTCTAAC
131 AAAATTTGAAAATAATGAAACATG--------A-ATATATATAAACACATATAAATCATTCTAAC
7927195 AATAATTTTTTAAATTAATGTTATCTGAAACCCTCATACTTTTGTAAAAAATAATATAGCCCTTA
187 AATAATTTTTTAAATTAATGTTATCTGAAACCCTCATACTTTTGTAAAAAATAATATAGCCCTTA
7927260 AACTTTTTTTACACTCAATATAATCCTTAAATTAAATTTTTTAATAATTTAGTTTTTAGTATTTT
252 AACTTTTTTTACACTCAATATAATCCTTAAATTAAATTTTTTAATAATTTAGTTTTTAGTATTTT
*
7927325 TATATTTAATATTTTGAATATCATAATAATTATTTATATTTCATATTTTTAATTTAAATAATTTT
317 TATATTTAATATTTTGAATATCATAATAATTATTTATATTTCATATTTTTAATTTAAACAATTTT
*
7927390 TAAATTTTTAAAAATTAAATAAGTCCTTAAATTTTCTAAAATAATCAATTAAG
382 TAAATTTTTAAAAATTAAATAAGTCCTTAAACTTTCTAAAATAATCAATTAAG
7927443 TCTAAAAAACATAAAACGTTAAAGAAAATATGTTTAGTTATTTGAAAAATAAATTTTGAAAATTG
1 TCTAAAAAACATAAAACGTTAAAGAAAATATGTTTAGTTATTTGAAAAATAAATTTTGAAAATTG
7927508 AAAATACAAATAAGTGAAAATATGAAAACTTAAAAAAATATTTTCAGTATTTTCATTAAAATTGT
66 AAAATACAAATAAGTGAAAATATG-AAA---AAAAAAATATTTTCAGTATTTTCATTAAAATTGT
*
7927573 TTTGAAAATTTGAAAATAATGAAACATG-ATATATATAAACACATATAAATCATTCTAATAATAA
127 TTTGAAAATTTGAAAATAATGAAACATGAATATATATAAACACATATAAATCATTCTAACAATAA
7927637 TTTTTTAAATTAATGTTATCTGAAACCCTCATACTTTTGTAAAAAATAATATAGCCCTTAAACTT
192 TTTTTTAAATTAATGTTATCTGAAACCCTCATACTTTTGTAAAAAATAATATAGCCCTTAAACTT
* *
7927702 TTTTTACACTCAATGTAGTCCTTAAATTAAATTTTTTAATAATTTAGTTTTTAGTATTTTTATAT
257 TTTTTACACTCAATATAATCCTTAAATTAAATTTTTTAATAATTTAGTTTTTAGTATTTTTATAT
**
7927767 TTAATATTTTGAATATCATAATAATTATTTATATTTCATATTTTTAATTTAAACAATTTTTTTAT
322 TTAATATTTTGAATATCATAATAATTATTTATATTTCATATTTTTAATTTAAACAATTTTTAAAT
7927832 TTTTAAAAATTAAATAAGTCCTTAAACTTTCTAAAATAATCAATTAAG
387 TTTTAAAAATTAAATAAGTCCTTAAACTTTCTAAAATAATCAATTAAG
7927880 TC
1 TC
7927882 AATCTACCAC
Statistics
Matches: 425, Mismatches: 10, Indels: 14
0.95 0.02 0.03
Matches are distributed among these distances:
437 274 0.64
443 86 0.20
444 3 0.01
447 62 0.15
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.42
Consensus pattern (434 bp):
TCTAAAAAACATAAAACGTTAAAGAAAATATGTTTAGTTATTTGAAAAATAAATTTTGAAAATTG
AAAATACAAATAAGTGAAAATATGAAAAAAAAAATATTTTCAGTATTTTCATTAAAATTGTTTTG
AAAATTTGAAAATAATGAAACATGAATATATATAAACACATATAAATCATTCTAACAATAATTTT
TTAAATTAATGTTATCTGAAACCCTCATACTTTTGTAAAAAATAATATAGCCCTTAAACTTTTTT
TACACTCAATATAATCCTTAAATTAAATTTTTTAATAATTTAGTTTTTAGTATTTTTATATTTAA
TATTTTGAATATCATAATAATTATTTATATTTCATATTTTTAATTTAAACAATTTTTAAATTTTT
AAAAATTAAATAAGTCCTTAAACTTTCTAAAATAATCAATTAAG
Found at i:7928250 original size:2 final size:2
Alignment explanation
Indices: 7928243--7928302 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
7928233 ATTAAGAATA
7928243 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7928285 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
7928303 TCATATGGTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7933820 original size:9 final size:9
Alignment explanation
Indices: 7933802--7933860 Score: 70
Period size: 9 Copynumber: 6.9 Consensus size: 9
7933792 TTTATATCTG
7933802 TAAA-AAAT
1 TAAATAAAT
*
7933810 TAATTAAAT
1 TAAATAAAT
*
7933819 TAAAT-ACT
1 TAAATAAAT
7933827 TAAATAAAT
1 TAAATAAAT
*
7933836 TAAATACA-
1 TAAATAAAT
7933844 TAAATAAAT
1 TAAATAAAT
7933853 TAAATAAA
1 TAAATAAA
7933861 AAATATTAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
8 17 0.40
9 25 0.60
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.32
Consensus pattern (9 bp):
TAAATAAAT
Found at i:7933829 original size:17 final size:17
Alignment explanation
Indices: 7933809--7933858 Score: 82
Period size: 17 Copynumber: 2.9 Consensus size: 17
7933799 CTGTAAAAAA
*
7933809 TTAATTAAATTAAATAC
1 TTAAATAAATTAAATAC
7933826 TTAAATAAATTAAATAC
1 TTAAATAAATTAAATAC
*
7933843 ATAAATAAATTAAATA
1 TTAAATAAATTAAATA
7933859 AAAAATATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (17 bp):
TTAAATAAATTAAATAC
Found at i:7936765 original size:27 final size:26
Alignment explanation
Indices: 7936710--7936765 Score: 103
Period size: 26 Copynumber: 2.1 Consensus size: 26
7936700 TAAAAGGCAG
7936710 TAAATTAAATGTTATTGAAAAAACAT
1 TAAATTAAATGTTATTGAAAAAACAT
7936736 TAAATTAAATGTTATTGAAAAAAACAT
1 TAAATTAAATGTTATTG-AAAAAACAT
7936763 TAA
1 TAA
7936766 TGAAGCATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 17 0.59
27 12 0.41
ACGTcount: A:0.55, C:0.04, G:0.07, T:0.34
Consensus pattern (26 bp):
TAAATTAAATGTTATTGAAAAAACAT
Found at i:7937949 original size:20 final size:20
Alignment explanation
Indices: 7937920--7937958 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7937910 AGAGCCCATA
*
7937920 TAGGATCATATAGATGCATT
1 TAGGAACATATAGATGCATT
*
7937940 TAGGAACATATAGTTGCAT
1 TAGGAACATATAGATGCAT
7937959 GTGGTGAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (20 bp):
TAGGAACATATAGATGCATT
Found at i:7941882 original size:41 final size:40
Alignment explanation
Indices: 7941832--7941940 Score: 119
Period size: 42 Copynumber: 2.6 Consensus size: 40
7941822 GCCCGGAGGT
* * * * *
7941832 CTTATGGATGACCCGAATGACTTATCATCCTGCTCTAAAGG
1 CTTACGGATGACCCGAAGGACTTAT-ATCATGCTCGAAAGA
*
7941873 CTTACGGATGACCCGAAGGATTTAAGTATCATGCTCGAAAGA
1 CTTACGGATGACCCGAAGGACTT-A-TATCATGCTCGAAAGA
* *
7941915 CTTACTGATGGCCCGAAGGACTTATA
1 CTTACGGATGACCCGAAGGACTTATA
7941941 AATCGTGAAA
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
40 2 0.04
41 21 0.37
42 33 0.58
43 1 0.02
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (40 bp):
CTTACGGATGACCCGAAGGACTTATATCATGCTCGAAAGA
Found at i:7942361 original size:42 final size:41
Alignment explanation
Indices: 7942263--7942369 Score: 124
Period size: 42 Copynumber: 2.6 Consensus size: 41
7942253 ACCCGAAGGT
* * * * * *
7942263 CTTATAGATGTCCCGAAGGACTTATCATCTTGCTCTAAAGG
1 CTTACAGATGACCCGAAGGACTTAGCATCATGCTCGAAAGA
*
7942304 CTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGA
1 CTTACAGATGACCCGAAGGACTT-AGCATCATGCTCGAAAGA
* *
7942346 CTTACTGATGGCCCGAAGGACTTA
1 CTTACAGATGACCCGAAGGACTTA
7942370 TAAATTGTGA
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 21 0.38
42 34 0.62
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.26
Consensus pattern (41 bp):
CTTACAGATGACCCGAAGGACTTAGCATCATGCTCGAAAGA
Found at i:7942561 original size:42 final size:41
Alignment explanation
Indices: 7942485--7942585 Score: 130
Period size: 42 Copynumber: 2.4 Consensus size: 41
7942475 AAGTCTTATG
* * *
7942485 GATGGCCCGAAGGACTTATCATCTTGCTCTAAAGACTTACA
1 GATGGCCCGAAGGACTTAGCATCATGCTCGAAAGACTTACA
* * *
7942526 GATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACT
1 GATGGCCCGAAGGACTT-AGCATCATGCTCGAAAGACTTACA
*
7942568 GATGGCCCGAATGACTTA
1 GATGGCCCGAAGGACTTA
7942586 CAAATCGTGA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 16 0.32
42 34 0.68
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.25
Consensus pattern (41 bp):
GATGGCCCGAAGGACTTAGCATCATGCTCGAAAGACTTACA
Found at i:7942615 original size:431 final size:429
Alignment explanation
Indices: 7941812--7942917 Score: 1926
Period size: 431 Copynumber: 2.6 Consensus size: 429
7941802 ATTCTGGTGA
* * * *
7941812 AAAACATCCTGCCCGGAGGTCTTATGGATGACCCGAATGACTTATCATCCTGCTCTAAAGGCTTA
1 AAAACATCCTACCCGAAGGTCTTATGGATGACCCGAAGGACTTATCATCTTGCTCTAAAGGCTTA
* *
7941877 CGGATGACCCGAAGGATTTAAGTATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTATAA
66 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTATAA
7941942 ATCGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTTT
131 ATCGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCA-TTT
*
7942007 TTTCATTTTCAAATTCATTTGAAAACATCCTGCCCGAAGGTCTTATGGATGGCCCGAAGGACTTA
195 TTTCATTTTCAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTA
*
7942072 TCATCTTGCTCTAAAGGCTTACAGATGACCCGAAGAATTTAAGCATCATGATCGAAAGACTTACT
260 TCATCTTGCTCTAAAGACTTACAGATGACCCGAAGAATTTAAGCATCATGATCGAAAGACTTACT
* *
7942137 GATGGCCCGAAGGACTTAAAAATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTTAAAAATTCC
325 GATGGCCCGAAGGACTTAAAAATCGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAAATTCC
7942202 ATCTTCTTAAAACATCATTTTTTCATTTTCAAATTCATTTG
390 ATCTTCTTAAAACATC-TTTTTTCATTTTCAAATTCATTTG
* *
7942243 AAAACATCCTACCCGAAGGTCTTATAGATGTCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTA
1 AAAACATCCTACCCGAAGGTCTTATGGATGACCCGAAGGACTTATCATCTTGCTCTAAAGGCTTA
7942308 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTATAA
66 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTATAA
*
7942373 ATTGTGAAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTT
131 ATCGTG-AAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTT
* *
7942438 TTTCATTTTCAAATTCATTTGAAAAAATCCTACCCGAAAGTCTTATGGATGGCCCGAAGGACTTA
195 TTTCATTTTCAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTA
* *
7942503 TCATCTTGCTCTAAAGACTTACAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACT
260 TCATCTTGCTCTAAAGACTTACAGATGACCCGAAGAATTTAAGCATCATGATCGAAAGACTTACT
* * *
7942568 GATGGCCCGAATGACTTACAAATCGTGAAATTTTGAAAATCGCATTCTTTGTTTTCAAAAATTCC
325 GATGGCCCGAAGGACTTAAAAATCGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAAATTCC
*
7942633 ATCTTCTTAAAACATCTTTTTTCATTTTTAAATTCATTTG
390 ATCTTCTTAAAACATCTTTTTTCATTTTCAAATTCATTTG
* *
7942673 AAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGACTTA
1 AAAACATCCTACCCGAAGGTCTTATGGATGACCCGAAGGACTTATCATCTTGCTCTAAAGGCTTA
* *
7942738 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAATGACTTACAA
66 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTATAA
* *
7942803 ATCGTGAAATTTTGAAAATCACATTCTTTGTTTTCAAAAATTCCATCTTCTTAAAACATCA-TTT
131 ATCGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTTT
*
7942867 TTCATTTTTAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGG
196 TTCATTTTCAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGG
7942918 TTTGCTTCAC
Statistics
Matches: 642, Mismatches: 32, Indels: 5
0.95 0.05 0.01
Matches are distributed among these distances:
428 51 0.08
429 53 0.08
430 153 0.24
431 330 0.51
432 55 0.09
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (429 bp):
AAAACATCCTACCCGAAGGTCTTATGGATGACCCGAAGGACTTATCATCTTGCTCTAAAGGCTTA
CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTATAA
ATCGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTTT
TTCATTTTCAAATTCATTTGAAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTAT
CATCTTGCTCTAAAGACTTACAGATGACCCGAAGAATTTAAGCATCATGATCGAAAGACTTACTG
ATGGCCCGAAGGACTTAAAAATCGTGAAATTTTGAAAATCGCATTCTTAGTTTTCAAAAATTCCA
TCTTCTTAAAACATCTTTTTTCATTTTCAAATTCATTTG
Found at i:7942734 original size:214 final size:215
Alignment explanation
Indices: 7941812--7942917 Score: 1910
Period size: 216 Copynumber: 5.1 Consensus size: 215
7941802 ATTCTGGTGA
* * * * *
7941812 AAAACATCCTGCCCGGAGGTCTTATGGATGACCCGAATGACTTATCATCCTGCTCTAAAGGCTTA
1 AAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTA
* * *
7941877 CGGATGACCCGAAGGATTTAAGTATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTATAA
66 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACAA
7941942 ATCGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTTT
131 ATCGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCA-TTT
7942007 TTTCATTTTCAAATTCATTTG
195 TTTCATTTTCAAATTCATTTG
*
7942028 AAAACATCCTGCCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTA
1 AAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTA
* * *
7942093 CAGATGACCCGAAGAATTTAAGCATCATGATCGAAAGACTTACTGATGGCCCGAAGGACTTAAAA
66 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACAA
* * *
7942158 ATTGTGAAATTTTGAAAATCGCATTCTTAGTTTTTAAAAATTCCATCTTCTTAAAACATCATTTT
131 ATCGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTTT
7942223 TTCATTTTCAAATTCATTTG
196 TTCATTTTCAAATTCATTTG
* *
7942243 AAAACATCCTACCCGAAGGTCTTATAGATGTCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTA
1 AAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTA
*
7942308 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTATAA
66 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACAA
*
7942373 ATTGTGAAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTT
131 ATCGTG-AAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTT
7942438 TTTCATTTTCAAATTCATTTG
195 TTTCATTTTCAAATTCATTTG
* * *
7942459 AAAAAATCCTACCCGAAAGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGACTTA
1 AAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTA
*
7942524 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAATGACTTACAA
66 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACAA
*
7942589 ATCGTGAAATTTTGAAAATCGCATTCTTTGTTTTCAAAAATTCCATCTTCTTAAAACATC-TTTT
131 ATCGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTTT
*
7942653 TTCATTTTTAAATTCATTTG
196 TTCATTTTCAAATTCATTTG
*
7942673 AAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGACTTA
1 AAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTA
*
7942738 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAATGACTTACAA
66 CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACAA
* *
7942803 ATCGTGAAATTTTGAAAATCACATTCTTTGTTTTCAAAAATTCCATCTTCTTAAAACATCA-TTT
131 ATCGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTTT
*
7942867 TTCATTTTTAAATTCATTTG
196 TTCATTTTCAAATTCATTTG
7942887 AAAACATCCTACCCGAAGGTCTTATGGATGG
1 AAAACATCCTACCCGAAGGTCTTATGGATGG
7942918 TTTGCTTCAC
Statistics
Matches: 855, Mismatches: 33, Indels: 6
0.96 0.04 0.01
Matches are distributed among these distances:
214 264 0.31
215 207 0.24
216 384 0.45
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (215 bp):
AAAACATCCTACCCGAAGGTCTTATGGATGGCCCGAAGGACTTATCATCTTGCTCTAAAGGCTTA
CAGATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGGCCCGAAGGACTTACAA
ATCGTGAAATTTTGAAAATCGCATTCTTCGTTTTCAAAAATTCCATCTTCTTAAAACATCATTTT
TTCATTTTCAAATTCATTTG
Found at i:7942775 original size:42 final size:41
Alignment explanation
Indices: 7942699--7942799 Score: 130
Period size: 42 Copynumber: 2.4 Consensus size: 41
7942689 AGGTCTTATG
* * *
7942699 GATGGCCCGAAGGACTTATCATCTTGCTCTAAAGACTTACA
1 GATGGCCCGAAGGACTTAGCATCATGCTCGAAAGACTTACA
* * *
7942740 GATGACCCGAAGGATTTAAGCATCATGCTCGAAAGACTTACT
1 GATGGCCCGAAGGACTT-AGCATCATGCTCGAAAGACTTACA
*
7942782 GATGGCCCGAATGACTTA
1 GATGGCCCGAAGGACTTA
7942800 CAAATCGTGA
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
41 16 0.32
42 34 0.68
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.25
Consensus pattern (41 bp):
GATGGCCCGAAGGACTTAGCATCATGCTCGAAAGACTTACA
Found at i:7945937 original size:2 final size:2
Alignment explanation
Indices: 7945925--7945976 Score: 97
Period size: 2 Copynumber: 26.5 Consensus size: 2
7945915 ATTATGTACC
7945925 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7945966 TA TA TA TA TA T
1 TA TA TA TA TA T
7945977 GTTGGGTATG
Statistics
Matches: 49, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 48 0.98
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7948085 original size:6 final size:6
Alignment explanation
Indices: 7948070--7948106 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
7948060 AAACAAATAC
7948070 ATGC-A ATGCAA ATGCAA ATGCTAA ATGCAA ATGCAA A
1 ATGCAA ATGCAA ATGCAA ATGC-AA ATGCAA ATGCAA A
7948107 AGGTGTTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 4 0.13
6 20 0.67
7 6 0.20
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (6 bp):
ATGCAA
Found at i:7948097 original size:13 final size:12
Alignment explanation
Indices: 7948070--7948106 Score: 58
Period size: 13 Copynumber: 3.1 Consensus size: 12
7948060 AAACAAATAC
7948070 ATGC-AATGCAA
1 ATGCAAATGCAA
7948081 ATGCAAATGCTAA
1 ATGCAAATGC-AA
7948094 ATGCAAATGCAA
1 ATGCAAATGCAA
7948106 A
1 A
7948107 AGGTGTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 4 0.17
12 8 0.33
13 12 0.50
ACGTcount: A:0.49, C:0.16, G:0.16, T:0.19
Consensus pattern (12 bp):
ATGCAAATGCAA
Found at i:7948521 original size:55 final size:54
Alignment explanation
Indices: 7948459--7948598 Score: 185
Period size: 52 Copynumber: 2.6 Consensus size: 54
7948449 CAACTTCTAA
* *
7948459 CTTCATTCATCGGATGTCTTTCTTCAAGGATCGGTCTTCAATCAGGTTCAAATTT
1 CTTCATTCATCGGATGTC-TTCTTCAAGAATCAGTCTTCAATCAGGTTCAAATTT
* * * *
7948514 CTTCATTCTTCGGATGTC--CTTCATGAATCATTCTTCAATCGGGTTCAAATTT
1 CTTCATTCATCGGATGTCTTCTTCAAGAATCAGTCTTCAATCAGGTTCAAATTT
*
7948566 CTTCATTCATCGGATGTCCTTCTTCATGAATCA
1 CTTCATTCATCGGATGT-CTTCTTCAAGAATCA
7948599 CTTGAATGTC
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
52 45 0.60
53 1 0.01
55 29 0.39
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (54 bp):
CTTCATTCATCGGATGTCTTCTTCAAGAATCAGTCTTCAATCAGGTTCAAATTT
Found at i:7955455 original size:3 final size:3
Alignment explanation
Indices: 7955441--7955489 Score: 66
Period size: 3 Copynumber: 17.0 Consensus size: 3
7955431 TATCCCGTTT
* *
7955441 TTA TTT TTA TTA TTA -TG TTA TT- TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7955487 TTA
1 TTA
7955490 AATAATTATA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
2 3 0.08
3 37 0.93
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7956538 original size:21 final size:21
Alignment explanation
Indices: 7956512--7956557 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
7956502 AATCATGGCC
*
7956512 TTTAAT-TTATATATTTTACAT
1 TTTAATCTTAT-TATTTTAAAT
7956533 TTTAATCTTATTATTTTAAAT
1 TTTAATCTTATTATTTTAAAT
7956554 TTTA
1 TTTA
7956558 TTTGTCTCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (21 bp):
TTTAATCTTATTATTTTAAAT
Found at i:7957665 original size:2 final size:2
Alignment explanation
Indices: 7957658--7957687 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7957648 TTAGAATTGT
7957658 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7957688 CAATGATGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7960485 original size:19 final size:18
Alignment explanation
Indices: 7960461--7960497 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
7960451 GAAGGAATTC
*
7960461 GAGAATTTATTGACAAATG
1 GAGAATTAATTGA-AAATG
7960480 GAGAATTAATTGAAAATG
1 GAGAATTAATTGAAAATG
7960498 TAATCAACGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.46, C:0.03, G:0.22, T:0.30
Consensus pattern (18 bp):
GAGAATTAATTGAAAATG
Found at i:7961688 original size:72 final size:72
Alignment explanation
Indices: 7961571--7961709 Score: 233
Period size: 72 Copynumber: 1.9 Consensus size: 72
7961561 ATACAATAAA
*
7961571 GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATAGCCCCGGCTTTATGGATAATATTCAGCTAGT
1 GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATAGCCCCGACTTTATGGATAATATTCAGCTAGT
7961636 CTGTTAT
66 CTGTTAT
* * * *
7961643 GCTTGATTTGTCCCTCTAAAGCAATTGGTTAATCGCCCCGACTTTATGGATAATATTCAGCTAGT
1 GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATAGCCCCGACTTTATGGATAATATTCAGCTAGT
7961708 CT
66 CT
7961710 ACTATACTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 62 1.00
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (72 bp):
GCTTGAGTTATCCCCCTAAAGCAATTGGTTAATAGCCCCGACTTTATGGATAATATTCAGCTAGT
CTGTTAT
Found at i:7961833 original size:11 final size:11
Alignment explanation
Indices: 7961804--7961866 Score: 58
Period size: 11 Copynumber: 5.5 Consensus size: 11
7961794 AGTAAAAAGG
7961804 AAAG-AAGAAGA
1 AAAGAAAGAA-A
*
7961815 AGAAGAAAGAAT
1 A-AAGAAAGAAA
7961827 AAAGAAA-AAA
1 AAAGAAAGAAA
*
7961837 ATAAAAAAGAAAA
1 A-AAGAAAG-AAA
7961850 AAAGAAAGAAA
1 AAAGAAAGAAA
7961861 AAAGAA
1 AAAGAA
7961867 GTTGCTAAGG
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
10 3 0.07
11 21 0.49
12 10 0.23
13 9 0.21
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.03
Consensus pattern (11 bp):
AAAGAAAGAAA
Found at i:7964884 original size:222 final size:222
Alignment explanation
Indices: 7964496--7964980 Score: 735
Period size: 222 Copynumber: 2.2 Consensus size: 222
7964486 CTATTTCCCG
* * * ** * *
7964496 AGATGATAAGACCTCCGGCCATCCATAAGACCTTCAGTCCATGATGTTTTCAAATGAGATTTTGG
1 AGATGATAAGACCTCGGGCCATCCATAAGA-CATCCGGGCAGGATGTTTCCAAATGAGATTTTGG
* * *
7964561 AAACTAAGCCTTTCAGGGGTTTCTTAATTATCTCAAAAGAATTGTTAAAGGAATCTAAGCCTTTT
65 AAACTAAGACTTTCAGGGGTTTCTGAATTATCTCAAAAGAATTGTTAAAGGAAGCTAAGCCTTTT
7964626 AAGGGGTTCCTTGACAACCAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGTTTAAATCCT
130 AAGGGGTTCCTTGACAACCAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGTTTAAATCCT
7964691 CCGGGTCATCTGTAAGCCTT-TCGAGCA-
195 CCGGGTCATCTGTAAGCCTTCT-GAGCAC
*
7964718 AGATGATAAGACCTCTGGGCCATCCATAAGACATCCGGGCAGGATGTTTCCAAATGATATTTTGG
1 AGATGATAAGACCTC-GGGCCATCCATAAGACATCCGGGCAGGATGTTTCCAAATGAGATTTTGG
* *
7964783 AAACTAATACTTTCAGGGGTTTCTGAATTATCTCAAAAGAGTTGTTAAAGGAAGCTAAGCCTTTT
65 AAACTAAGACTTTCAGGGGTTTCTGAATTATCTCAAAAGAATTGTTAAAGGAAGCTAAGCCTTTT
*
7964848 AAGGGGTTCCTTGACAACCAAGAAACTAATCTTGATTTTCAAGGGTTTCTTGATGTTTAAATCCT
130 AAGGGGTTCCTTGACAACCAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGTTTAAATCCT
* *
7964913 CCGGGTCATCTGTATGTCTTCTGAGCAC
195 CCGGGTCATCTGTAAGCCTTCTGAGCAC
* *
7964941 A-ATGATAAGTCCTCCGGGCCAAT-CATAAGACCTCCGGGCA
1 AGATGATAAGACCT-CGGGCC-ATCCATAAGACATCCGGGCA
7964981 TAATGTTTTC
Statistics
Matches: 240, Mismatches: 18, Indels: 10
0.90 0.07 0.04
Matches are distributed among these distances:
222 221 0.92
223 19 0.08
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (222 bp):
AGATGATAAGACCTCGGGCCATCCATAAGACATCCGGGCAGGATGTTTCCAAATGAGATTTTGGA
AACTAAGACTTTCAGGGGTTTCTGAATTATCTCAAAAGAATTGTTAAAGGAAGCTAAGCCTTTTA
AGGGGTTCCTTGACAACCAAGAAACTAAGCTTGATTTTCAAGGGTTTCTTGATGTTTAAATCCTC
CGGGTCATCTGTAAGCCTTCTGAGCAC
Found at i:7964968 original size:20 final size:20
Alignment explanation
Indices: 7964940--7964979 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
7964930 CTTCTGAGCA
* *
7964940 CAATGATAAGTCCTCCGGGC
1 CAATCATAAGACCTCCGGGC
7964960 CAATCATAAGACCTCCGGGC
1 CAATCATAAGACCTCCGGGC
7964980 ATAATGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.33, G:0.23, T:0.17
Consensus pattern (20 bp):
CAATCATAAGACCTCCGGGC
Found at i:7965359 original size:3 final size:3
Alignment explanation
Indices: 7965345--7965400 Score: 51
Period size: 3 Copynumber: 19.0 Consensus size: 3
7965335 TGTCCCATTT
* * * * * *
7965345 TTA TTT TTA TTA TTA ATA ATA TTA ATA TTT TTG TTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7965392 TTA TTA TTA
1 TTA TTA TTA
7965401 AATAATAAAT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
2 2 0.05
3 41 0.95
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:7966539 original size:21 final size:21
Alignment explanation
Indices: 7966513--7966556 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7966503 AATTATGGCC
*
7966513 TTTAAT-TTATATATTTTACAT
1 TTTAATCTTAT-TATTTTAAAT
7966534 TTTAATCTTATTATTTTAAAT
1 TTTAATCTTATTATTTTAAAT
7966555 TT
1 TT
7966557 GATTTGTCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTAATCTTATTATTTTAAAT
Found at i:7966969 original size:156 final size:154
Alignment explanation
Indices: 7966702--7966997 Score: 395
Period size: 155 Copynumber: 1.9 Consensus size: 154
7966692 TAAATAATAA
7966702 TATTTATTTATTTTTTAATATTAAAAAAGGGTATGTCTTAAAGTAACTAGATGTTATTTTCTGAT
1 TATTTATTTATTTTTTAATATTAAAAAAGGGTATGTCTTAAAGTAACTAGATGTTATTTTCTGAT
* * *
7966767 ATTTTTAAATAAATAAATACAATACTTATAATATATATATATATATATATATA-TTTACTTTTAT
66 ATTTTTAAATAAATAAATACAATACTTATAATATACATA-A-AAATATATTTACTTTACTTTTAT
**
7966831 TCAAATTATTTTTATATTTTTATTAT
129 AAAAATTATTTTTATATTTTTATTAT
*
7966857 TATTTATTTATTTTTTAATATTAAAGAAATGTGT-TGTCTTAAAGTAACTAGAT-TTCATTTTCT
1 TATTTATTTATTTTTTAATATTAAA-AAA-GGGTATGTCTTAAAGTAACTAGATGTT-ATTTTCT
** * * *
7966920 GATATTTTTAAAATAAATAAATACCCTATTTATAA-A-ACCCTAAAAATATATTTACTTTAGTTT
63 GATATTTTT-AAATAAATAAATACAATACTTATAATATA-CATAAAAATATATTTACTTTACTTT
7966983 TATAAAAATTATTTT
126 TATAAAAATTATTTT
7966998 AGTTTTATTT
Statistics
Matches: 124, Mismatches: 11, Indels: 12
0.84 0.07 0.08
Matches are distributed among these distances:
154 9 0.07
155 49 0.40
156 41 0.33
157 25 0.20
ACGTcount: A:0.39, C:0.06, G:0.05, T:0.50
Consensus pattern (154 bp):
TATTTATTTATTTTTTAATATTAAAAAAGGGTATGTCTTAAAGTAACTAGATGTTATTTTCTGAT
ATTTTTAAATAAATAAATACAATACTTATAATATACATAAAAATATATTTACTTTACTTTTATAA
AAATTATTTTTATATTTTTATTAT
Found at i:7968782 original size:18 final size:19
Alignment explanation
Indices: 7968734--7968786 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
7968724 CTATTTTCTA
7968734 TTTTTTTTAAAATAAATA-
1 TTTTTTTTAAAATAAATAT
* * * *
7968752 TATTATTTAAAAAAAATCT
1 TTTTTTTTAAAATAAATAT
7968771 TTTTTTTTAAAATAAA
1 TTTTTTTTAAAATAAA
7968787 ATTCAACCGT
Statistics
Matches: 27, Mismatches: 7, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
18 14 0.52
19 13 0.48
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
TTTTTTTTAAAATAAATAT
Found at i:7974796 original size:21 final size:21
Alignment explanation
Indices: 7974772--7974835 Score: 57
Period size: 21 Copynumber: 3.3 Consensus size: 21
7974762 GATTTGTGAG
7974772 ATTTGGCTTGCAAATTGTCAA
1 ATTTGGCTTGCAAATTGTCAA
* * *
7974793 ATTT-G---GC-AATTATTAG
1 ATTTGGCTTGCAAATTGTCAA
*
7974809 GTTTGGCTTGCAAATTGTCAA
1 ATTTGGCTTGCAAATTGTCAA
7974830 ATTTGG
1 ATTTGG
7974836 TAAGTTGGCA
Statistics
Matches: 30, Mismatches: 8, Indels: 10
0.62 0.17 0.21
Matches are distributed among these distances:
16 9 0.30
17 3 0.10
20 3 0.10
21 15 0.50
ACGTcount: A:0.27, C:0.11, G:0.22, T:0.41
Consensus pattern (21 bp):
ATTTGGCTTGCAAATTGTCAA
Found at i:7980652 original size:21 final size:22
Alignment explanation
Indices: 7980626--7980666 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
7980616 CCAGGACAGG
7980626 GAGTATCAGTAC-TCCTTTAAT
1 GAGTATCAGTACTTCCTTTAAT
7980647 GAGTATCAGTACTTCCTTTA
1 GAGTATCAGTACTTCCTTTA
7980667 TAATATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (22 bp):
GAGTATCAGTACTTCCTTTAAT
Found at i:7983488 original size:18 final size:18
Alignment explanation
Indices: 7983454--7983487 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7983444 TTTATAAAGT
7983454 AGTATCGATACTCTTTTG
1 AGTATCGATACTCTTTTG
7983472 AGTATCGATAC-CTTTT
1 AGTATCGATACTCTTTT
7983488 TTGCATTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.24, C:0.18, G:0.15, T:0.44
Consensus pattern (18 bp):
AGTATCGATACTCTTTTG
Found at i:7993018 original size:17 final size:18
Alignment explanation
Indices: 7992984--7993025 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 18
7992974 ATTATTTTTA
7992984 AAATAAAAGATAAGAATT
1 AAATAAAAGATAAGAATT
*
7993002 AAATAAAA-ATAATAATT
1 AAATAAAAGATAAGAATT
7993019 AAATAAA
1 AAATAAA
7993026 CAAATTAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (18 bp):
AAATAAAAGATAAGAATT
Found at i:7995581 original size:5 final size:5
Alignment explanation
Indices: 7995571--7995677 Score: 69
Period size: 5 Copynumber: 21.4 Consensus size: 5
7995561 GTTCAGAGAA
* * *
7995571 AAAAT AAAAT AAAAT -AAAT CAAAAT AAAAT -AAAT AGAAT GAAAT AAAGT
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
** * * * *
7995620 TCACT -AAA- AAAAT AAAAT AAAAAT AAAAC GAAAT AAAAT GAAAAT GAAAT
1 AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT
7995670 GAAAAT AA
1 -AAAAT AA
7995678 TAACGAAATG
Statistics
Matches: 78, Mismatches: 16, Indels: 16
0.71 0.15 0.15
Matches are distributed among these distances:
4 12 0.15
5 48 0.62
6 18 0.23
ACGTcount: A:0.71, C:0.04, G:0.07, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:7995600 original size:11 final size:10
Alignment explanation
Indices: 7995571--7995677 Score: 69
Period size: 11 Copynumber: 10.7 Consensus size: 10
7995561 GTTCAGAGAA
7995571 AAAATAAAAT
1 AAAATAAAAT
7995581 AAAAT-AAAT
1 AAAATAAAAT
7995590 CAAAATAAAAT
1 -AAAATAAAAT
*
7995601 -AAATAGAAT
1 AAAATAAAAT
* *
7995610 GAAATAAAGT
1 AAAATAAAAT
** *
7995620 TCACT-AAA-
1 AAAATAAAAT
7995628 AAAATAAAAT
1 AAAATAAAAT
*
7995638 AAAAATAAAAC
1 -AAAATAAAAT
*
7995649 GAAATAAAAT
1 AAAATAAAAT
*
7995659 GAAAATGAAAT
1 -AAAATAAAAT
7995670 GAAAATAA
1 -AAAATAA
7995678 TAACGAAATG
Statistics
Matches: 74, Mismatches: 16, Indels: 13
0.72 0.16 0.13
Matches are distributed among these distances:
8 2 0.03
9 17 0.23
10 27 0.36
11 28 0.38
ACGTcount: A:0.71, C:0.04, G:0.07, T:0.19
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:8000732 original size:3 final size:3
Alignment explanation
Indices: 8000724--8000778 Score: 60
Period size: 3 Copynumber: 18.7 Consensus size: 3
8000714 AAAATAAATA
* *
8000724 AAT AAT AAT AAT AAT AA- AAT AAA AAT AAT -AT AAT AAT AAAT ATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
*
8000768 AAT AGT AAT AA
1 AAT AAT AAT AA
8000779 ATATAAAAGG
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
2 4 0.09
3 36 0.84
4 3 0.07
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8000741 original size:25 final size:22
Alignment explanation
Indices: 8000713--8000763 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 22
8000703 AAAGATATAT
8000713 TAAAATAAATAAATAATAATAATAA
1 TAAAAT-AA-AAATAAT-ATAATAA
8000738 TAAAATAAAAATAATATAATAA
1 TAAAATAAAAATAATATAATAA
8000760 TAAA
1 TAAA
8000764 TATTAATAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 11 0.42
23 7 0.27
24 2 0.08
25 6 0.23
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (22 bp):
TAAAATAAAAATAATATAATAA
Found at i:8000744 original size:14 final size:14
Alignment explanation
Indices: 8000727--8000762 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
8000717 ATAAATAAAT
8000727 AATAATAATAATAA
1 AATAATAATAATAA
* *
8000741 AATAAAAATAATAT
1 AATAATAATAATAA
8000755 AATAATAA
1 AATAATAA
8000763 ATATTAATAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AATAATAATAATAA
Found at i:8000777 original size:12 final size:11
Alignment explanation
Indices: 8000707--8000781 Score: 57
Period size: 11 Copynumber: 6.7 Consensus size: 11
8000697 AGTTGAAAAG
*
8000707 ATATATTAA-A
1 ATATAATAATA
8000717 ATA-AATAAATA
1 ATATAAT-AATA
8000728 ATAATAATAATA
1 AT-ATAATAATA
* *
8000740 AAATAAAAATA
1 ATATAATAATA
8000751 ATATAATAATAA
1 ATATAATAAT-A
*
8000763 ATATTAATAGTA
1 ATA-TAATAATA
8000775 ATA-AATA
1 ATATAATA
8000782 TAAAAGGGGA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
9 2 0.04
10 9 0.17
11 19 0.36
12 14 0.26
13 9 0.17
ACGTcount: A:0.67, C:0.00, G:0.01, T:0.32
Consensus pattern (11 bp):
ATATAATAATA
Found at i:8011644 original size:19 final size:19
Alignment explanation
Indices: 8011620--8011658 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
8011610 ATGTCAAGAT
8011620 ATAAGCCAAGCAATCAAGG
1 ATAAGCCAAGCAATCAAGG
8011639 ATAAGCCAAGCAATCAAGG
1 ATAAGCCAAGCAATCAAGG
8011658 A
1 A
8011659 AACAAAGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.21, G:0.21, T:0.10
Consensus pattern (19 bp):
ATAAGCCAAGCAATCAAGG
Found at i:8016121 original size:2 final size:2
Alignment explanation
Indices: 8016114--8016149 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
8016104 TATCTATCTG
8016114 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8016150 GTTTCACTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8017687 original size:21 final size:21
Alignment explanation
Indices: 8017661--8017703 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
8017651 CGTTCATCAC
8017661 TCAATTATCTTTACACTTTTA
1 TCAATTATCTTTACACTTTTA
* *
8017682 TCAATTATCTTTATATTTTTA
1 TCAATTATCTTTACACTTTTA
8017703 T
1 T
8017704 TTTGATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.14, G:0.00, T:0.58
Consensus pattern (21 bp):
TCAATTATCTTTACACTTTTA
Found at i:8024248 original size:24 final size:24
Alignment explanation
Indices: 8024216--8024275 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
8024206 TCCTGACCCA
*
8024216 TTGACTTTGATCTAACCCGAACTG
1 TTGACTTTGACCTAACCCGAACTG
* *
8024240 TTGACTTTGACCTGACTCGAACTG
1 TTGACTTTGACCTAACCCGAACTG
8024264 TTGACTTTGACC
1 TTGACTTTGACC
8024276 ATTGACTATT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (24 bp):
TTGACTTTGACCTAACCCGAACTG
Found at i:8024289 original size:20 final size:20
Alignment explanation
Indices: 8024264--8024314 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
8024254 ACTCGAACTG
8024264 TTGACTTTGACCATTGACTA
1 TTGACTTTGACCATTGACTA
* * * *
8024284 TTGACTTTGATCGTTGATTG
1 TTGACTTTGACCATTGACTA
8024304 TTGACTTTGAC
1 TTGACTTTGAC
8024315 TTTTTTGTTA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.45
Consensus pattern (20 bp):
TTGACTTTGACCATTGACTA
Found at i:8024981 original size:27 final size:28
Alignment explanation
Indices: 8024951--8025022 Score: 94
Period size: 27 Copynumber: 2.6 Consensus size: 28
8024941 ATAATCCCTG
*
8024951 TCCTGATTTTGCATGGGCTTAG--TTCTA
1 TCCTGATTCTGCATGGGCTTAGTCTTC-A
*
8024978 TCCTGATTCTGTATGGGCTTAGTCTTCA
1 TCCTGATTCTGCATGGGCTTAGTCTTCA
*
8025006 TCCTGATTCTACATGGG
1 TCCTGATTCTGCATGGG
8025023 ATCATATCCT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
27 20 0.51
28 16 0.41
29 3 0.08
ACGTcount: A:0.15, C:0.21, G:0.22, T:0.42
Consensus pattern (28 bp):
TCCTGATTCTGCATGGGCTTAGTCTTCA
Found at i:8025095 original size:28 final size:30
Alignment explanation
Indices: 8025004--8025149 Score: 104
Period size: 29 Copynumber: 5.0 Consensus size: 30
8024994 GCTTAGTCTT
* * * *
8025004 CATCCTGATTCTACATGGGATCATAT-CCT
1 CATCCTGATTTTGCATGGGATTATATCCCC
*
8025033 CATCATGATTTTGCATGGGATTATATCCCC
1 CATCCTGATTTTGCATGGGATTATATCCCC
*
8025063 CATCCTGATTTTGTAT-GGACTTAT-T-CCC
1 CATCCTGATTTTGCATGGGA-TTATATCCCC
* * * * *
8025091 CATCCTAATTTTACATGGGGTTACAT-CCA
1 CATCCTGATTTTGCATGGGATTATATCCCC
** * * *
8025120 TGTCCTGATTCTGCATGAGATTACATCCCC
1 CATCCTGATTTTGCATGGGATTATATCCCC
8025150 GTCCTATTTC
Statistics
Matches: 91, Mismatches: 21, Indels: 9
0.75 0.17 0.07
Matches are distributed among these distances:
28 19 0.21
29 50 0.55
30 22 0.24
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.36
Consensus pattern (30 bp):
CATCCTGATTTTGCATGGGATTATATCCCC
Found at i:8025129 original size:87 final size:86
Alignment explanation
Indices: 8024947--8025149 Score: 198
Period size: 87 Copynumber: 2.4 Consensus size: 86
8024937 GGGCATAATC
* * * **
8024947 CCTGTCCTGATTTTGCATGGGCTTAGT-T---CTATCCTGATTCTGTATGGGCTTAGTCTTCATC
1 CCTGTCCTGATTTTGCATGGGATTA-TATCCCCCATCCTGATTCTGTATGGACTTAGTCCCCATC
* *
8025008 CTGATTCTACATGGGATCATAT
65 CTAATTCTACATGGGATCACAT
* * * *
8025030 CCTCATCATGATTTTGCATGGGATTATATCCCCCATCCTGATTTTGTATGGACTTATTCCCCATC
1 CCT-GTCCTGATTTTGCATGGGATTATATCCCCCATCCTGATTCTGTATGGACTTAGTCCCCATC
* * *
8025095 CTAATTTTACATGGGGTTACAT
65 CTAATTCTACATGGGATCACAT
* * *
8025117 CCATGTCCTGATTCTGCATGAGATTACATCCCC
1 CC-TGTCCTGATTTTGCATGGGATTATATCCCC
8025150 GTCCTATTTC
Statistics
Matches: 95, Mismatches: 19, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
83 4 0.04
84 20 0.21
87 70 0.74
88 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (86 bp):
CCTGTCCTGATTTTGCATGGGATTATATCCCCCATCCTGATTCTGTATGGACTTAGTCCCCATCC
TAATTCTACATGGGATCACAT
Found at i:8025759 original size:24 final size:22
Alignment explanation
Indices: 8025727--8025780 Score: 54
Period size: 24 Copynumber: 2.4 Consensus size: 22
8025717 TGAAAATTTG
* *
8025727 TTTAAAAAAATTTGTAAAATGAT
1 TTTAGAAAAATATG-AAAATGAT
*
8025750 CTTTAGAAAAGTATGAAAATGAT
1 -TTTAGAAAAATATGAAAATGAT
*
8025773 TTTTGAAA
1 TTTAGAAA
8025781 GACCATGCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
22 7 0.27
23 8 0.31
24 11 0.42
ACGTcount: A:0.48, C:0.02, G:0.13, T:0.37
Consensus pattern (22 bp):
TTTAGAAAAATATGAAAATGAT
Found at i:8029159 original size:18 final size:17
Alignment explanation
Indices: 8029136--8029222 Score: 66
Period size: 17 Copynumber: 5.1 Consensus size: 17
8029126 TTAATATGTG
*
8029136 TCTGATAACTGTAAAACA
1 TCTGATAACTAT-AAACA
* *
8029154 TCTGATATCTATAAATA
1 TCTGATAACTATAAACA
* * *
8029171 TCTGATAATTTTAATCA
1 TCTGATAACTATAAACA
* *
8029188 TCTGATATCTATAAATA
1 TCTGATAACTATAAACA
* * *
8029205 TATGATAAATGTAAACA
1 TCTGATAACTATAAACA
8029222 T
1 T
8029223 TTAGAATTCA
Statistics
Matches: 51, Mismatches: 18, Indels: 1
0.73 0.26 0.01
Matches are distributed among these distances:
17 41 0.80
18 10 0.20
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (17 bp):
TCTGATAACTATAAACA
Found at i:8029175 original size:17 final size:17
Alignment explanation
Indices: 8029153--8029211 Score: 68
Period size: 17 Copynumber: 3.5 Consensus size: 17
8029143 ACTGTAAAAC
8029153 ATCTGATATCTATAAAT
1 ATCTGATATCTATAAAT
*
8029170 ATCTGATAAT-T-TTAAT
1 ATCTGAT-ATCTATAAAT
8029186 CATCTGATATCTATAAAT
1 -ATCTGATATCTATAAAT
*
8029204 ATATGATA
1 ATCTGATA
8029212 AATGTAAACA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
16 6 0.17
17 23 0.66
18 6 0.17
ACGTcount: A:0.41, C:0.10, G:0.07, T:0.42
Consensus pattern (17 bp):
ATCTGATATCTATAAAT
Found at i:8031176 original size:33 final size:33
Alignment explanation
Indices: 8031139--8031209 Score: 133
Period size: 33 Copynumber: 2.2 Consensus size: 33
8031129 TAAATCCATA
8031139 AAATCCATAAACCCTTCATAAACCCTAGTCATC
1 AAATCCATAAACCCTTCATAAACCCTAGTCATC
*
8031172 AAATCCATAAACCCTTCATAAATCCTAGTCATC
1 AAATCCATAAACCCTTCATAAACCCTAGTCATC
8031205 AAATC
1 AAATC
8031210 TCAACATCCA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.41, C:0.31, G:0.03, T:0.25
Consensus pattern (33 bp):
AAATCCATAAACCCTTCATAAACCCTAGTCATC
Found at i:8031896 original size:20 final size:20
Alignment explanation
Indices: 8031864--8031932 Score: 77
Period size: 20 Copynumber: 3.4 Consensus size: 20
8031854 CCTATTGACT
*
8031864 TTGACTGTTAATCGTTGGTCG
1 TTGACT-TTAATCGTTGATCG
8031885 TTGACTTTAATCGTTGATCG
1 TTGACTTTAATCGTTGATCG
** *
8031905 TAAACTTTAA-CTGTTGACCG
1 TTGACTTTAATC-GTTGATCG
8031925 TTGACTTT
1 TTGACTTT
8031933 TTTAAAGACC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
19 1 0.02
20 34 0.83
21 6 0.15
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.43
Consensus pattern (20 bp):
TTGACTTTAATCGTTGATCG
Found at i:8032565 original size:28 final size:28
Alignment explanation
Indices: 8032522--8032714 Score: 115
Period size: 28 Copynumber: 6.8 Consensus size: 28
8032512 GATGGCATAA
*
8032522 TCCCCGTCCTGATTCTGAATAGGCTTAG
1 TCCCCATCCTGATTCTGAATAGGCTTAG
* * *
8032550 TCCCCATCCTGGTTCTGCATGGGCTTAG
1 TCCCCATCCTGATTCTGAATAGGCTTAG
* * *
8032578 TCCCCATCCTAATTCT-ATATGAGATCATA-
1 TCCCCATCCTGATTCTGA-AT-AG-GCTTAG
* * *
8032607 TCCCCATCCTGATTCTGCATGAGATCATA-
1 TCCCCATCCTGATTCTGAAT-AG-GCTTAG
* * * *
8032636 T-CTCACTCCTAATTCTGTATGGGCTTAG
1 TCCCCA-TCCTGATTCTGAATAGGCTTAG
* * * *
8032664 TCCCCATCTTGATTCTGTATGGGTTTAG
1 TCCCCATCCTGATTCTGAATAGGCTTAG
* * *
8032692 TCCCCGTCCTAATTCTGCATAGG
1 TCCCCATCCTGATTCTGAATAGG
8032715 ATTAAATCCC
Statistics
Matches: 131, Mismatches: 27, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
27 3 0.02
28 82 0.63
29 43 0.33
30 3 0.02
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.35
Consensus pattern (28 bp):
TCCCCATCCTGATTCTGAATAGGCTTAG
Found at i:8032615 original size:29 final size:29
Alignment explanation
Indices: 8032578--8032656 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
8032568 ATGGGCTTAG
*
8032578 TCCCCATCCTAATTCTATATGAGATCATA
1 TCCCCATCCTAATTCTGTATGAGATCATA
* *
8032607 TCCCCATCCTGATTCTGCATGAGATCATA
1 TCCCCATCCTAATTCTGTATGAGATCATA
*
8032636 T-CTCACTCCTAATTCTGTATG
1 TCCCCA-TCCTAATTCTGTATG
8032657 GGCTTAGTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 3 0.07
29 40 0.93
ACGTcount: A:0.25, C:0.29, G:0.10, T:0.35
Consensus pattern (29 bp):
TCCCCATCCTAATTCTGTATGAGATCATA
Found at i:8032668 original size:57 final size:56
Alignment explanation
Indices: 8032528--8032708 Score: 152
Period size: 57 Copynumber: 3.2 Consensus size: 56
8032518 ATAATCCCCG
* * * * * *
8032528 TCCTGATTCTGAATAGGCTTAGTCCCCATCCTGGTTCTGCATGGGCTTAGTCCCCA
1 TCCTAATTCTGTATGGGCTTAGTCCCCATCCTGATTCTGCATGGGCATAGTCCACA
* * * *
8032584 TCCTAATTCTATATGAGATCATA-TCCCCATCCTGATTCTGCATGAGATCATA-TCTCAC-
1 TCCTAATTCTGTATG-G-GCTTAGTCCCCATCCTGATTCTGCATG-G-GCATAGTC-CACA
* * ** * *
8032642 TCCTAATTCTGTATGGGCTTAGTCCCCATCTTGATTCTGTATGGGTTTAGTCCCCG
1 TCCTAATTCTGTATGGGCTTAGTCCCCATCCTGATTCTGCATGGGCATAGTCCACA
8032698 TCCTAATTCTG
1 TCCTAATTCTG
8032709 CATAGGATTA
Statistics
Matches: 98, Mismatches: 19, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
55 4 0.04
56 28 0.29
57 41 0.42
58 20 0.20
59 5 0.05
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (56 bp):
TCCTAATTCTGTATGGGCTTAGTCCCCATCCTGATTCTGCATGGGCATAGTCCACA
Found at i:8034264 original size:31 final size:31
Alignment explanation
Indices: 8034198--8034275 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
8034188 TTCAACATTC
* * *
8034198 AAGTGATCAAAACTTAATAAAACGATTACGG
1 AAGTGACCAAAACTTAATAAAACAATAACGG
* * *
8034229 AAGTGACCAAAACTTGATAAAATAATAACGT
1 AAGTGACCAAAACTTAATAAAACAATAACGG
*
8034260 AAGTGGCCAAAACTTA
1 AAGTGACCAAAACTTA
8034276 TGTTTTTTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.49, C:0.14, G:0.15, T:0.22
Consensus pattern (31 bp):
AAGTGACCAAAACTTAATAAAACAATAACGG
Found at i:8040700 original size:21 final size:21
Alignment explanation
Indices: 8040674--8040726 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8040664 ATTCTGACTA
8040674 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
8040695 TCGCATTGCAATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
8040716 TCGCAATGCGA
1 TCGCATTGCGA
8040727 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.25, C:0.26, G:0.15, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:8040876 original size:20 final size:21
Alignment explanation
Indices: 8040716--8040877 Score: 201
Period size: 20 Copynumber: 8.0 Consensus size: 21
8040706 TTTTCCTAAT
8040716 TCGCAATGCGAA-TACGTAAA
1 TCGCAATGCGAATTACGTAAA
*
8040736 TCGCAACGCG-ATTACGTAAA
1 TCGCAATGCGAATTACGTAAA
* * *
8040756 TCGTAATGCGAATTAGGAAAA
1 TCGCAATGCGAATTACGTAAA
8040777 TCGCAATGCGAA-TACGTAAA
1 TCGCAATGCGAATTACGTAAA
*
8040797 TCGCAACGCG-ATTACGTAAA
1 TCGCAATGCGAATTACGTAAA
* *
8040817 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAATTACGTAAA
8040838 TCGCAATGCGAA-TACGTAAA
1 TCGCAATGCGAATTACGTAAA
**
8040858 TCGCAATATGAATTA-GTAAA
1 TCGCAATGCGAATTACGTAAA
8040878 ATCATAATGC
Statistics
Matches: 121, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
19 2 0.02
20 78 0.64
21 41 0.34
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (21 bp):
TCGCAATGCGAATTACGTAAA
Done.