Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007984.1 Hibiscus syriacus cultivar Beakdansim tig00110429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12923621
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 39 of 65
Found at i:8040877 original size:61 final size:61
Alignment explanation
Indices: 8040716--8040863 Score: 287
Period size: 61 Copynumber: 2.4 Consensus size: 61
8040706 TTTTCCTAAT
*
8040716 TCGCAATGCGAATACGTAAATCGCAACGCGATTACGTAAATCGTAATGCGAATTAGGAAAA
1 TCGCAATGCGAATACGTAAATCGCAACGCGATTACGTAAATCGCAATGCGAATTAGGAAAA
8040777 TCGCAATGCGAATACGTAAATCGCAACGCGATTACGTAAATCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAATACGTAAATCGCAACGCGATTACGTAAATCGCAATGCGAATTAGGAAAA
8040838 TCGCAATGCGAATACGTAAATCGCAA
1 TCGCAATGCGAATACGTAAATCGCAA
8040864 TATGAATTAG
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
61 86 1.00
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.20
Consensus pattern (61 bp):
TCGCAATGCGAATACGTAAATCGCAACGCGATTACGTAAATCGCAATGCGAATTAGGAAAA
Found at i:8040889 original size:41 final size:41
Alignment explanation
Indices: 8040716--8040877 Score: 204
Period size: 41 Copynumber: 4.0 Consensus size: 41
8040706 TTTTCCTAAT
*
8040716 TCGCAATGCGAATACGTAAATCGCAACGCG-ATTACGTAAA
1 TCGCAATGCGAATACGTAAATCGCAATGCGAATTACGTAAA
* * *
8040756 TCGTAATGCGAATTAGGAAAATCGCAATGCGAA-TACGTAAA
1 TCGCAATGCGAA-TACGTAAATCGCAATGCGAATTACGTAAA
* * * *
8040797 TCGCAACGCGATTACGTAAATCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAATACGTAAATCGCAATGCGAATTACGTAAA
**
8040838 TCGCAATGCGAATACGTAAATCGCAATATGAATTA-GTAAA
1 TCGCAATGCGAATACGTAAATCGCAATGCGAATTACGTAAA
8040878 ATCATAATGC
Statistics
Matches: 103, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
40 33 0.32
41 69 0.67
42 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (41 bp):
TCGCAATGCGAATACGTAAATCGCAATGCGAATTACGTAAA
Found at i:8041449 original size:20 final size:20
Alignment explanation
Indices: 8041424--8041474 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
8041414 TTCTAAACTT
*
8041424 AAAATCGCAACATGAAAATG
1 AAAATCGCAACACGAAAATG
8041444 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
**
8041464 ACTATCGCAAC
1 AAAATCGCAAC
8041475 GAGATAATCG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.51, C:0.22, G:0.14, T:0.14
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:8041486 original size:14 final size:14
Alignment explanation
Indices: 8041467--8041522 Score: 58
Period size: 14 Copynumber: 3.6 Consensus size: 14
8041457 GAAAATGACT
8041467 ATCGCAACGAGATA
1 ATCGCAACGAGATA
*
8041481 ATCGCAACGCGAAATAAAA
1 ATCGCAA--CGAGAT---A
8041500 ATCGCAACGAGATA
1 ATCGCAACGAGATA
8041514 ATCGCAACG
1 ATCGCAACG
8041523 CGAAACCAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 17 0.49
16 5 0.14
17 5 0.14
19 8 0.23
ACGTcount: A:0.45, C:0.23, G:0.20, T:0.12
Consensus pattern (14 bp):
ATCGCAACGAGATA
Found at i:8041509 original size:33 final size:33
Alignment explanation
Indices: 8041467--8041538 Score: 126
Period size: 33 Copynumber: 2.2 Consensus size: 33
8041457 GAAAATGACT
*
8041467 ATCGCAACGAGATAATCGCAACGCGAAATAAAA
1 ATCGCAACGAGATAATCGCAACGCGAAACAAAA
*
8041500 ATCGCAACGAGATAATCGCAACGCGAAACCAAA
1 ATCGCAACGAGATAATCGCAACGCGAAACAAAA
8041533 ATCGCA
1 ATCGCA
8041539 TTGCGATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.46, C:0.25, G:0.18, T:0.11
Consensus pattern (33 bp):
ATCGCAACGAGATAATCGCAACGCGAAACAAAA
Found at i:8041745 original size:25 final size:26
Alignment explanation
Indices: 8041691--8041745 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
8041681 TTATGTTTAT
*
8041691 TGTTTTTGGTATATCTTCACATTGTA
1 TGTTTTTGGTATATCTTAACATTGTA
8041717 -GTTTTTGGTATATC-TAAC-TTGGTA
1 TGTTTTTGGTATATCTTAACATT-GTA
8041741 TGTTT
1 TGTTT
8041746 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 2 0.08
24 6 0.23
25 18 0.69
ACGTcount: A:0.18, C:0.09, G:0.18, T:0.55
Consensus pattern (26 bp):
TGTTTTTGGTATATCTTAACATTGTA
Found at i:8041967 original size:20 final size:20
Alignment explanation
Indices: 8041944--8042009 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
8041934 GATTCGCAAC
*
8041944 GCGATTCT-AACTATCGCATT
1 GCGATTCTCAAAT-TCGCATT
8041964 GCGATTTCTCAAATTCGCATT
1 GCGA-TTCTCAAATTCGCATT
* * *
8041985 GCGATTTTCCTAATTCGCAAT
1 GCGATTCT-CAAATTCGCATT
8042006 GCGA
1 GCGA
8042010 ATACGTAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
20 7 0.18
21 29 0.74
22 3 0.08
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (20 bp):
GCGATTCTCAAATTCGCATT
Found at i:8041981 original size:21 final size:21
Alignment explanation
Indices: 8041957--8042009 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
8041947 ATTCTAACTA
8041957 TCGCATTGCGA-TTTCTCAAAT
1 TCGCATTGCGATTTTC-CAAAT
*
8041978 TCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTTCCAAAT
*
8041999 TCGCAATGCGA
1 TCGCATTGCGA
8042010 ATACGTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 25 0.86
22 4 0.14
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:8042024 original size:20 final size:20
Alignment explanation
Indices: 8041999--8042110 Score: 152
Period size: 20 Copynumber: 5.5 Consensus size: 20
8041989 TTTTCCTAAT
8041999 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
8042019 TCGCAACGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
8042039 TCGCAACGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
8042059 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAA-TACGTAAA
**
8042080 TCGCAATGTAAATACGTAAA
1 TCGCAATGCGAATACGTAAA
8042100 TCGCAATGCGA
1 TCGCAATGCGA
8042111 TTTACAGCGC
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
20 63 0.80
21 16 0.20
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.20
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:8042055 original size:40 final size:41
Alignment explanation
Indices: 8041999--8042115 Score: 155
Period size: 41 Copynumber: 2.9 Consensus size: 41
8041989 TTTTCCTAAT
* *
8041999 TCGCAATGCGAATACGTAAATCGCAACGCGAA-TACGTAAA
1 TCGCAATGCGAATACGTAAATCGCAATGCGAATTACGAAAA
* * *
8042039 TCGCAACGCGATTACGTAAATCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAATACGTAAATCGCAATGCGAATTACGAAAA
** *
8042080 TCGCAATGTAAATACGTAAATCGCAATGCGATTTAC
1 TCGCAATGCGAATACGTAAATCGCAATGCGAATTAC
8042116 AGCGCCATTC
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
40 29 0.45
41 36 0.55
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (41 bp):
TCGCAATGCGAATACGTAAATCGCAATGCGAATTACGAAAA
Found at i:8042081 original size:61 final size:60
Alignment explanation
Indices: 8041999--8042112 Score: 165
Period size: 61 Copynumber: 1.9 Consensus size: 60
8041989 TTTTCCTAAT
* *
8041999 TCGCAATGCGAATACGTAAATCGCAACGCGAATACGTAAATCGCAACGCGATTACGTAAA
1 TCGCAATGCGAATACGAAAATCGCAACGCAAATACGTAAATCGCAACGCGATTACGTAAA
* * * *
8042059 TCGCAATGCGAATTAGGAAAATCGCAATGTAAATACGTAAATCGCAATGCGATT
1 TCGCAATGCGAA-TACGAAAATCGCAACGCAAATACGTAAATCGCAACGCGATT
8042113 TACAGCGCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
60 12 0.26
61 35 0.74
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.21
Consensus pattern (60 bp):
TCGCAATGCGAATACGAAAATCGCAACGCAAATACGTAAATCGCAACGCGATTACGTAAA
Found at i:8042665 original size:20 final size:19
Alignment explanation
Indices: 8042640--8042711 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 19
8042630 TTCTAAACTT
*
8042640 AAAATCGCAATATGAAAATG
1 AAAATCGCAACA-GAAAATG
*
8042660 AAAATCGAAACACGAAAATG
1 AAAATCGCAACA-GAAAATG
**
8042680 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAAC-AGA-AAATG
8042701 AAAATCGCAAC
1 AAAATCGCAAC
8042712 GAGATAATCG
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
20 27 0.64
21 15 0.36
ACGTcount: A:0.53, C:0.17, G:0.17, T:0.14
Consensus pattern (19 bp):
AAAATCGCAACAGAAAATG
Found at i:8042700 original size:21 final size:21
Alignment explanation
Indices: 8042655--8042715 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
8042645 CGCAATATGA
*
8042655 AAATGAAAATCGAAAC-ACGA-
1 AAATGAAAATCGCAACGA-GAG
**
8042675 AAATGACTATCGCAACGAGAG
1 AAATGAAAATCGCAACGAGAG
8042696 AAATGAAAATCGCAACGAGA
1 AAATGAAAATCGCAACGAGA
8042716 TAATCGCAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 15 0.44
21 19 0.56
ACGTcount: A:0.52, C:0.16, G:0.20, T:0.11
Consensus pattern (21 bp):
AAATGAAAATCGCAACGAGAG
Found at i:8042842 original size:20 final size:19
Alignment explanation
Indices: 8042738--8042850 Score: 110
Period size: 20 Copynumber: 6.1 Consensus size: 19
8042728 GAAACCAAAA
*
8042738 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
8042757 TCGCGTTGC-A-ATTC---
1 TCGCGTTGCGATTTTCATT
*
8042771 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
8042790 TCGCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
8042809 TACGCGTTGAGATTTTCATT
1 T-CGCGTTGCGATTTTCATT
*
8042829 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
8042849 TC
1 TC
8042851 AACCAAAAGA
Statistics
Matches: 75, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
14 8 0.11
15 1 0.01
16 3 0.04
17 3 0.04
18 1 0.01
19 27 0.36
20 31 0.41
21 1 0.01
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:8045052 original size:9 final size:9
Alignment explanation
Indices: 8045038--8045081 Score: 52
Period size: 9 Copynumber: 4.6 Consensus size: 9
8045028 ATGCTTGAAC
8045038 AAAAAAAGA
1 AAAAAAAGA
8045047 AAAAAAAGGAAA
1 AAAAAAA-G--A
8045059 AAAAAAAGA
1 AAAAAAAGA
*
8045068 AGAAAAAGA
1 AAAAAAAGA
8045077 AAAAA
1 AAAAA
8045082 GAGGGGGTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
9 20 0.67
10 1 0.03
11 1 0.03
12 8 0.27
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (9 bp):
AAAAAAAGA
Found at i:8045060 original size:11 final size:10
Alignment explanation
Indices: 8045038--8045081 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
8045028 ATGCTTGAAC
8045038 AAAAAAAGAA
1 AAAAAAAGAA
*
8045048 AAAAAAGGAA
1 AAAAAAAGAA
8045058 AAAAAAA-AGA
1 AAAAAAAGA-A
*
8045068 AGAAAAAGAA
1 AAAAAAAGAA
8045078 AAAA
1 AAAA
8045082 GAGGGGGTCA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.04
10 26 0.93
11 1 0.04
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:8045064 original size:21 final size:20
Alignment explanation
Indices: 8045038--8045081 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 20
8045028 ATGCTTGAAC
8045038 AAAAAAAGAAAAAAAAGGAAA
1 AAAAAAAGAAAAAAAA-GAAA
*
8045059 AAAAAAAGAAGAAAAAGAAA
1 AAAAAAAGAAAAAAAAGAAA
8045079 AAA
1 AAA
8045082 GAGGGGGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (20 bp):
AAAAAAAGAAAAAAAAGAAA
Found at i:8045463 original size:19 final size:17
Alignment explanation
Indices: 8045421--8045469 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 17
8045411 TATTTTCTTC
8045421 AAATTCAATTTA-TTTG
1 AAATTCAATTTATTTTG
*
8045437 AGATTCAATTTATTTTCG
1 AAATTCAATTTATTTT-G
8045455 AAAATTCAATTTATT
1 -AAATTCAATTTATT
8045470 CTTTTATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 11 0.39
17 3 0.11
18 1 0.04
19 13 0.46
ACGTcount: A:0.37, C:0.08, G:0.06, T:0.49
Consensus pattern (17 bp):
AAATTCAATTTATTTTG
Found at i:8046855 original size:114 final size:114
Alignment explanation
Indices: 8046649--8046872 Score: 333
Period size: 114 Copynumber: 2.0 Consensus size: 114
8046639 AAGTGCCATG
* *
8046649 TGCTCATAGTAGAAATAAGAAAACCCAATAGCATCTTCTGGAAGTGTCCTTTGAGTTATCTGATT
1 TGCTCATAGTACAAATAAGAAAACCCAATAGCATCTTCTGGAAGTGTCCTTTGAGTTATCTGATC
* * * * * *
8046714 TGATTTGGTATGAACCCCAAAATCAATCATTGGATTTGAAAGATGAATT
66 TGATTCGGTAGGAACCACAAAACCAATCATTAGAATTGAAAGATGAATT
*
8046763 TGCTCATAGTACAAATAA-AAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGAT
1 TGCTCATAGTACAAATAAGAAA-ACCCAATAGCATCTTCTGGAAGTGTCCTTTGAGTTATCTGAT
* *
8046827 CTGGTTCGGTAGGAACCACAGAACCAATCATTAGAATTGAAAGATG
65 CTGATTCGGTAGGAACCACAAAACCAATCATTAGAATTGAAAGATG
8046873 GACTGCATGA
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
113 3 0.03
114 95 0.97
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (114 bp):
TGCTCATAGTACAAATAAGAAAACCCAATAGCATCTTCTGGAAGTGTCCTTTGAGTTATCTGATC
TGATTCGGTAGGAACCACAAAACCAATCATTAGAATTGAAAGATGAATT
Found at i:8047804 original size:116 final size:115
Alignment explanation
Indices: 8047600--8047935 Score: 446
Period size: 116 Copynumber: 2.9 Consensus size: 115
8047590 CCAGTTCGAG
* * * * * *
8047600 TTCATAATGAGAAGAACTTGTTCAACTTTTTGCTTAAATTCATCACTCGGTGGAACAGCAGTACC
1 TTCATAATGAGAAGAATTTGTTCAACCTTTTG-TTAAATTCATCACTTGATGGATCAGCATTACC
*
8047665 AGTTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGAAAGAAGAAA
65 AGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGAAAGAAGAAA
* * * * *
8047716 TTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTGAATTCATCATTTGATGGATCAACATTGCT
1 TTCATAATGAGAAGAATTTGTTCAACCTTTTG-TTAAATTCATCACTTGATGGATCAGCATTACC
8047781 AGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGAAAGAAGAAA
65 AGGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGAAAGAAGAAA
* * * * *
8047832 TTCATAATGAGAAGAATTTGTTCAACCTTTTGCTAAATCCATCACTTGATGGATTAGCTTTTCCA
1 TTCATAATGAGAAGAATTTGTTCAACCTTTTGTTAAATTCATCACTTGATGGATCAGCATTACCA
* *
8047897 GAG-AAAGTTCATAATAAGAAGAA-T--TCATCTGAAGAAGAA
66 G-GTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGAA
8047936 GTTCACAATG
Statistics
Matches: 195, Mismatches: 24, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
112 15 0.08
114 1 0.01
115 43 0.22
116 136 0.70
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.30
Consensus pattern (115 bp):
TTCATAATGAGAAGAATTTGTTCAACCTTTTGTTAAATTCATCACTTGATGGATCAGCATTACCA
GGTAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGAAAGAAGAAA
Found at i:8048109 original size:124 final size:124
Alignment explanation
Indices: 8047891--8048180 Score: 348
Period size: 124 Copynumber: 2.4 Consensus size: 124
8047881 TGGATTAGCT
* *
8047891 TTTCCAGAGAAAGTTCATAATAAGAAGAATTCATCT------G-AAGAAGAAGTTCACAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAAAAGAAAGAAGAAGTTCACAATGAGA
* * * * * * *
8047949 AGAGCTTGTTCAACCTTTTGCATAATTCTATTACAGAAAGAGATAGATTAGCATCAACC
66 AGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAAGAAATAGATCAACATCAACC
*
8048008 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAAAAGAAAGAAGAAGTTCATAATGAGA
1 TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAAAAGAAAGAAGAAGTTCACAATGAGA
* * * *
8048073 AGAGCTTATTCAACCTTTTGAATGACTCTATCACAGAAGGAAATAGGTCAACATCATCC
66 AGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAAGAAATAGATCAACATCAACC
*
8048132 ---CCAGCGGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAGAAGAA
1 TTTCCAG-AGAAAGTTCATAATGAGAAGAACTCATCTGAA-AAAGA-AAGAA
8048181 TTTATTCAAC
Statistics
Matches: 148, Mismatches: 15, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
117 34 0.23
121 4 0.03
122 31 0.21
123 6 0.04
124 73 0.49
ACGTcount: A:0.42, C:0.16, G:0.19, T:0.24
Consensus pattern (124 bp):
TTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAAAAGAAAGAAGAAGTTCACAATGAGA
AGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAAGAAATAGATCAACATCAACC
Found at i:8048334 original size:3 final size:3
Alignment explanation
Indices: 8048326--8048388 Score: 101
Period size: 3 Copynumber: 21.0 Consensus size: 3
8048316 TTTTATTTAT
*
8048326 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TAA TTA TTA -TA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
8048371 TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
8048389 AATATATATA
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
2 2 0.04
3 51 0.91
4 3 0.05
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:8050526 original size:17 final size:16
Alignment explanation
Indices: 8050495--8050528 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
8050485 CACGTGAGGA
8050495 TTATTTTCTTCTTATT
1 TTATTTTCTTCTTATT
*
8050511 TTATTTATCTTTTTATT
1 TTATTT-TCTTCTTATT
8050528 T
1 T
8050529 ACTGTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTCTTCTTATT
Found at i:8056922 original size:19 final size:21
Alignment explanation
Indices: 8056885--8056927 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
8056875 TAACTTTTTC
8056885 TTTTATCTTTCATTATTAA-T
1 TTTTATCTTTCATTATTAACT
*
8056905 TTTTCTCTTTCATT-TTAACT
1 TTTTATCTTTCATTATTAACT
8056925 TTT
1 TTT
8056928 ACCTTTTCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.19, C:0.14, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTATCTTTCATTATTAACT
Found at i:8056933 original size:19 final size:20
Alignment explanation
Indices: 8056884--8056933 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
8056874 TTAACTTTTT
*
8056884 CTTTTATCTTTCATTATTAA
1 CTTTTACCTTTCATTATTAA
*
8056904 -TTTTTCTCTTTCATT-TTAA
1 CTTTTAC-CTTTCATTATTAA
8056923 CTTTTACCTTT
1 CTTTTACCTTT
8056934 TCTCTTTCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (20 bp):
CTTTTACCTTTCATTATTAA
Found at i:8060774 original size:17 final size:16
Alignment explanation
Indices: 8060743--8060776 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
8060733 CAAGTGAGGA
8060743 TTATTTTCTTCTTATT
1 TTATTTTCTTCTTATT
*
8060759 TTATTTATCTTTTTATT
1 TTATTT-TCTTCTTATT
8060776 T
1 T
8060777 ACTGTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTCTTCTTATT
Found at i:8061627 original size:20 final size:19
Alignment explanation
Indices: 8061604--8061869 Score: 207
Period size: 20 Copynumber: 13.4 Consensus size: 19
8061594 AGAATCTCGT
8061604 TGCGATTTACTAAATCGCAA
1 TGCGA-TTACTAAATCGCAA
*
8061624 TGCGAATACATAAATCGCAA
1 TGCGATTAC-TAAATCGCAA
**
8061644 TGCGAATTAGGAAAATCGCAA
1 TGCG-ATTA-CTAAATCGCAA
8061665 TGCGATTACTAAATCGCAA
1 TGCGATTACTAAATCGCAA
*
8061684 TGCGAATACATAAATCGCAA
1 TGCGATTAC-TAAATCGCAA
**
8061704 TGCGAATTAGGAAAATCGCAA
1 TGCG-ATTA-CTAAATCGCAA
8061725 TGCGATTACTAAATCGCAA
1 TGCGATTACTAAATCGCAA
** *
8061744 TGCGAATTAGGAAAATCACAA
1 TGCG-ATTA-CTAAATCGCAA
*
8061765 TGCTATTACGTAAATCGCAA
1 TGCGATTAC-TAAATCGCAA
* *
8061785 TGCGATTACGT-ATTCGCAT
1 TGCGATTAC-TAAATCGCAA
*
8061804 TGCGATTTACGT-AATCGCAT
1 TGCGA-TTAC-TAAATCGCAA
* *
8061824 TGTGATTTACGT-AATCGCAT
1 TGCGA-TTAC-TAAATCGCAA
* *
8061844 TGCGATTAAGT-AATCGCAT
1 TGCGATT-ACTAAATCGCAA
8061863 TGCGATT
1 TGCGATT
8061870 TTCCGTATTC
Statistics
Matches: 209, Mismatches: 26, Indels: 23
0.81 0.10 0.09
Matches are distributed among these distances:
19 62 0.30
20 104 0.50
21 43 0.21
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (19 bp):
TGCGATTACTAAATCGCAA
Found at i:8061681 original size:60 final size:60
Alignment explanation
Indices: 8061604--8061793 Score: 294
Period size: 60 Copynumber: 3.1 Consensus size: 60
8061594 AGAATCTCGT
8061604 TGCGATTTACTAAATCGCAATGCGAATACATAAATCGCAATGCGAATTAGGAAAATCGCAA
1 TGCGA-TTACTAAATCGCAATGCGAATACATAAATCGCAATGCGAATTAGGAAAATCGCAA
8061665 TGCGATTACTAAATCGCAATGCGAATACATAAATCGCAATGCGAATTAGGAAAATCGCAA
1 TGCGATTACTAAATCGCAATGCGAATACATAAATCGCAATGCGAATTAGGAAAATCGCAA
* * * * *
8061725 TGCGATTACTAAATCGCAATGCGAATTAGGA-AAATCACAATGC-TATTACGTAAATCGCAA
1 TGCGATTACTAAATCGCAATGCGAA-TA-CATAAATCGCAATGCGAATTAGGAAAATCGCAA
8061785 TGCGATTAC
1 TGCGATTAC
8061794 GTATTCGCAT
Statistics
Matches: 122, Mismatches: 5, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
60 103 0.84
61 18 0.15
62 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (60 bp):
TGCGATTACTAAATCGCAATGCGAATACATAAATCGCAATGCGAATTAGGAAAATCGCAA
Found at i:8061834 original size:60 final size:60
Alignment explanation
Indices: 8061636--8061969 Score: 275
Period size: 60 Copynumber: 5.6 Consensus size: 60
8061626 CGAATACATA
* * * * * *
8061636 AATCGCAATGCGAATTAGGAAAATCGCAATGCGATTAC-TAAATCGCAATGCGA-ATACAT
1 AATCGCATTGCGAATTACGTAAATCGCAATGCGATTACGT-AATCGCATTGCGATTTACGT
* * * * * * *
8061695 AAATCGCAATGCGAATTAGGAAAATCGCAATGCGATTAC-TAAATCGCAATGCGAATTAGGAA
1 -AATCGCATTGCGAATTACGTAAATCGCAATGCGATTACGT-AATCGCATTGCGATTTACG-T
* * * *
8061757 AATCACAATGC-TATTACGTAAATCGCAATGCGATTACGTATTCGCATTGCGATTTACGT
1 AATCGCATTGCGAATTACGTAAATCGCAATGCGATTACGTAATCGCATTGCGATTTACGT
* * * * *
8061816 AATCGCATTGTGATTTACGT-AATCGCATTGCGATTAAGTAATCGCATTGCGATTTTCCGT
1 AATCGCATTGCGAATTACGTAAATCGCAATGCGATTACGTAATCGCATTGCGA-TTTACGT
* * * * * * *
8061876 ATTCGCATTGCGATTTACGT-ATTCGCATTGCGATTTACGTAATAGCGTTACGATTTACGT
1 AATCGCATTGCGAATTACGTAAATCGCAATGCGA-TTACGTAATCGCATTGCGATTTACGT
* * * *
8061936 ATTCGCATTGCGAATTAGGAAAATCGCAACGCGA
1 AATCGCATTGCGAATTACGTAAATCGCAATGCGA
8061970 ATTTGGGAAA
Statistics
Matches: 231, Mismatches: 36, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
59 37 0.16
60 156 0.68
61 38 0.16
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (60 bp):
AATCGCATTGCGAATTACGTAAATCGCAATGCGATTACGTAATCGCATTGCGATTTACGT
Found at i:8061898 original size:20 final size:20
Alignment explanation
Indices: 8061770--8061948 Score: 227
Period size: 20 Copynumber: 8.9 Consensus size: 20
8061760 CACAATGCTA
*
8061770 TTACGTAAATCGCAATGCGA-
1 TTACGT-AATCGCATTGCGAT
*
8061790 TTACGTATTCGCATTGCGAT
1 TTACGTAATCGCATTGCGAT
*
8061810 TTACGTAATCGCATTGTGAT
1 TTACGTAATCGCATTGCGAT
8061830 TTACGTAATCGCATTGCGA-
1 TTACGTAATCGCATTGCGAT
*
8061849 TTAAGTAATCGCATTGCGATT
1 TTACGTAATCGCATTGCGA-T
* *
8061870 TTCCGTATTCGCATTGCGAT
1 TTACGTAATCGCATTGCGAT
*
8061890 TTACGTATTCGCATTGCGAT
1 TTACGTAATCGCATTGCGAT
* * *
8061910 TTACGTAATAGCGTTACGAT
1 TTACGTAATCGCATTGCGAT
*
8061930 TTACGTATTCGCATTGCGA
1 TTACGTAATCGCATTGCGA
8061949 ATTAGGAAAA
Statistics
Matches: 138, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
19 29 0.21
20 93 0.67
21 16 0.12
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (20 bp):
TTACGTAATCGCATTGCGAT
Found at i:8061969 original size:21 final size:21
Alignment explanation
Indices: 8061945--8061990 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
8061935 TATTCGCATT
8061945 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* *
8061966 GCGAATTTGGGAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
8061987 GCGA
1 GCGA
8061991 TAGTCAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.37, C:0.20, G:0.28, T:0.15
Consensus pattern (21 bp):
GCGAATTAGGAAAATCGCAAC
Found at i:8063885 original size:94 final size:93
Alignment explanation
Indices: 8063687--8064062 Score: 616
Period size: 94 Copynumber: 4.1 Consensus size: 93
8063677 TAGATGGCTT
* * *
8063687 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAAC--TGT-TT-ATTAACACTGTGAAGTTAAT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
8063748 ATTTATCTTTTGTTTTGTCTTTTGGTTGA
66 ATTTGTC-TTTGTTTTGTCTTTTGGTTGA
8063777 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
8063842 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
*
8063871 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
*
8063936 ATTTCTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
* * *
8063965 AGTAAATTTATTCGTTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAATACTCTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
8064030 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
8064058 AGTAA
1 AGTAA
8064063 TGCAATCCAT
Statistics
Matches: 270, Mismatches: 11, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
90 35 0.13
92 3 0.01
93 28 0.10
94 204 0.76
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.47
Consensus pattern (93 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTTGTCTTTTGGTTGA
Found at i:8064228 original size:33 final size:33
Alignment explanation
Indices: 8064179--8064276 Score: 133
Period size: 33 Copynumber: 2.9 Consensus size: 33
8064169 CGAGAGAATG
* *
8064179 AAAATCACAACGCGAAACGAAAATCGCAACGAG
1 AAAATCGCAACGCGAAACGAAAATCGCAACGAC
* * *
8064212 AGAATTGCAACGCGAAATGAAAATCGCAACGAC
1 AAAATCGCAACGCGAAACGAAAATCGCAACGAC
*
8064245 AAAATCGCAACGCGAAACCAAAAATCGCAACG
1 AAAATCGCAACGCGAAA-CGAAAATCGCAACG
8064277 CGAAACTATA
Statistics
Matches: 55, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
33 43 0.78
34 12 0.22
ACGTcount: A:0.49, C:0.24, G:0.18, T:0.08
Consensus pattern (33 bp):
AAAATCGCAACGCGAAACGAAAATCGCAACGAC
Found at i:8064242 original size:19 final size:19
Alignment explanation
Indices: 8064153--8064294 Score: 90
Period size: 20 Copynumber: 7.9 Consensus size: 19
8064143 TCTTTTGGTT
* *
8064153 GAAATGAAAATAGCAACGA
1 GAAATGAAAATCGCAACGC
*
8064172 GAGAATGAAAATCACAACGC
1 GA-AATGAAAATCGCAACGC
*
8064192 GAAACGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
* *
8064209 G--A-GAGAATTGCAACGC
1 GAAATGAAAATCGCAACGC
8064225 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
8064242 G--A-CAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
**
8064258 GAAACCAAAAATCGCAACGC
1 GAAA-TGAAAATCGCAACGC
*
8064278 GAAACT-ATAATCGCAAC
1 GAAA-TGAAAATCGCAAC
8064295 TATAATCGCG
Statistics
Matches: 98, Mismatches: 13, Indels: 24
0.73 0.10 0.18
Matches are distributed among these distances:
14 19 0.19
15 2 0.02
16 4 0.04
17 4 0.04
18 2 0.02
19 33 0.34
20 34 0.35
ACGTcount: A:0.49, C:0.22, G:0.19, T:0.10
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:8064341 original size:19 final size:19
Alignment explanation
Indices: 8064317--8064407 Score: 101
Period size: 19 Copynumber: 4.6 Consensus size: 19
8064307 GCGATTCTCT
*
8064317 CGTTGCGATTTTCGTTTCG
1 CGTTGCGATTTTCATTTCG
*
8064336 CGTTGCGATTTTCATTCTCT
1 CGTTGCGATTTTCATT-TCG
*
8064356 CGTTACGATTTTCATTTCG
1 CGTTGCGATTTTCATTTCG
** *
8064375 CGTTGCGATAGTCATTTTTCA
1 CGTTGCGATTTTCA--TTTCG
8064396 CGTTGCGATTTT
1 CGTTGCGATTTT
8064408 AAGTTCCAGA
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
19 28 0.47
20 17 0.29
21 14 0.24
ACGTcount: A:0.12, C:0.21, G:0.20, T:0.47
Consensus pattern (19 bp):
CGTTGCGATTTTCATTTCG
Found at i:8064342 original size:33 final size:33
Alignment explanation
Indices: 8064300--8064383 Score: 96
Period size: 39 Copynumber: 2.4 Consensus size: 33
8064290 GCAACTATAA
* *
8064300 TCGCGTTGCGATTCTCTCGTTGCGATTTTCGTT
1 TCGCGTTGCGATTCTCTCGTTACGATTTTCATT
8064333 TCGCGTTGCGATTTTCATTCTCTCGTTACGATTTTCATT
1 TCGCGTTGCG------ATTCTCTCGTTACGATTTTCATT
8064372 TCGCGTTGCGAT
1 TCGCGTTGCGAT
8064384 AGTCATTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
33 12 0.28
39 31 0.72
ACGTcount: A:0.10, C:0.24, G:0.21, T:0.45
Consensus pattern (33 bp):
TCGCGTTGCGATTCTCTCGTTACGATTTTCATT
Found at i:8064390 original size:39 final size:39
Alignment explanation
Indices: 8064310--8064390 Score: 126
Period size: 39 Copynumber: 2.1 Consensus size: 39
8064300 TCGCGTTGCG
* * **
8064310 ATTCTCTCGTTGCGATTTTCGTTTCGCGTTGCGATTTTC
1 ATTCTCTCGTTACGATTTTCATTTCGCGTTGCGATAGTC
8064349 ATTCTCTCGTTACGATTTTCATTTCGCGTTGCGATAGTC
1 ATTCTCTCGTTACGATTTTCATTTCGCGTTGCGATAGTC
8064388 ATT
1 ATT
8064391 TTTCACGTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.12, C:0.22, G:0.19, T:0.47
Consensus pattern (39 bp):
ATTCTCTCGTTACGATTTTCATTTCGCGTTGCGATAGTC
Found at i:8064884 original size:42 final size:42
Alignment explanation
Indices: 8064808--8064896 Score: 106
Period size: 42 Copynumber: 2.1 Consensus size: 42
8064798 GACTCGCCTG
* * *
8064808 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCCCCTA
* * * * *
8064850 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCCCCTA
8064892 TCATC
1 TCATC
8064897 GTTGAAGAGG
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.21, C:0.38, G:0.17, T:0.24
Consensus pattern (42 bp):
TCATCCCTCAAGAGTCCACTCCCACCGTTCAAGAGGCCCCTA
Found at i:8066298 original size:14 final size:14
Alignment explanation
Indices: 8066279--8066314 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
8066269 ATTGTTTAAT
8066279 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
8066293 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
8066307 TGATTTGT
1 TGATTTGT
8066315 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:8066455 original size:14 final size:14
Alignment explanation
Indices: 8066436--8066467 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
8066426 AATGCGAAAT
8066436 GAAAATCGCAACGA
1 GAAAATCGCAACGA
*
8066450 GAAAATCGCAACGC
1 GAAAATCGCAACGA
8066464 GAAA
1 GAAA
8066468 CTAAATTCGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.50, C:0.22, G:0.22, T:0.06
Consensus pattern (14 bp):
GAAAATCGCAACGA
Found at i:8066495 original size:19 final size:19
Alignment explanation
Indices: 8066473--8066623 Score: 98
Period size: 19 Copynumber: 8.7 Consensus size: 19
8066463 CGAAACTAAA
8066473 TTCGCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
8066492 TTCGCTTTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
* *
8066507 -CCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
8066525 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
8066540 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
*
8066558 TTCGCATTGCGA--TTC--
1 TTCGCGTTGCGATTTTCAT
*
8066573 -TCTCGTTGCGATTTTCAT
1 TTCGCGTTGCGATTTTCAT
* **
8066591 TTCGCATTGCGATAGTCAT
1 TTCGCGTTGCGATTTTCAT
8066610 TTCCGCGTTGCGAT
1 TT-CGCGTTGCGAT
8066624 AGACATTAAG
Statistics
Matches: 98, Mismatches: 18, Indels: 31
0.67 0.12 0.21
Matches are distributed among these distances:
14 26 0.27
16 9 0.09
17 9 0.09
19 44 0.45
20 10 0.10
ACGTcount: A:0.12, C:0.25, G:0.20, T:0.44
Consensus pattern (19 bp):
TTCGCGTTGCGATTTTCAT
Found at i:8066519 original size:33 final size:33
Alignment explanation
Indices: 8066477--8066603 Score: 236
Period size: 33 Copynumber: 3.8 Consensus size: 33
8066467 ACTAAATTCG
* *
8066477 CGTTGCGATTTTCATTTCGCTTTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
8066510 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
8066543 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
8066576 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
8066604 AGTCATTTCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 92 1.00
ACGTcount: A:0.12, C:0.24, G:0.19, T:0.45
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
Found at i:8066550 original size:14 final size:14
Alignment explanation
Indices: 8066498--8066585 Score: 59
Period size: 14 Copynumber: 5.6 Consensus size: 14
8066488 TCATTTCGCT
*
8066498 TTGCGATTCCCTCG
1 TTGCGATTCTCTCG
*
8066512 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
8066529 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
*
8066545 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
8066562 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
8066578 TTGCGATT
1 TTGCGATT
8066586 TTCATTTCGC
Statistics
Matches: 59, Mismatches: 5, Indels: 20
0.70 0.06 0.24
Matches are distributed among these distances:
14 20 0.34
16 14 0.24
17 13 0.22
19 12 0.20
ACGTcount: A:0.11, C:0.25, G:0.19, T:0.44
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:8066622 original size:20 final size:19
Alignment explanation
Indices: 8066576--8066630 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
8066566 GCGATTCTCT
**
8066576 CGTTGCGATTTTCATTTCG
1 CGTTGCGATAGTCATTTCG
*
8066595 CATTGCGATAGTCATTTCCG
1 CGTTGCGATAGTCATTT-CG
*
8066615 CGTTGCGATAGACATT
1 CGTTGCGATAGTCATT
8066631 AAGATGATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (19 bp):
CGTTGCGATAGTCATTTCG
Found at i:8070040 original size:21 final size:19
Alignment explanation
Indices: 8070004--8070168 Score: 145
Period size: 19 Copynumber: 8.4 Consensus size: 19
8069994 AGAATCTCGT
*
8070004 TGCGATTTACTAAATCGCAA
1 TGCGA-TTAGTAAATCGCAA
* *
8070024 TGCGAATTAGGAAAATCACAA
1 TGCG-ATTA-GTAAATCGCAA
*
8070045 TGCGATTACTAAATCGCAA
1 TGCGATTAGTAAATCGCAA
*
8070064 TGCGATTACTAAATCGCAA
1 TGCGATTAGTAAATCGCAA
8070083 TGCGATTACGTAAATCGCAA
1 TGCGATTA-GTAAATCGCAA
* *
8070103 TGCAAATTAGGAAAATCGCAA
1 TGC-GATTA-GTAAATCGCAA
* *
8070124 TGCGATTACGT-ATTCGCAT
1 TGCGATTA-GTAAATCGCAA
* *
8070143 TGCGATTACGT-ATTCGCAT
1 TGCGATTA-GTAAATCGCAA
8070162 TGCGATT
1 TGCGATT
8070169 TACGTAATCG
Statistics
Matches: 126, Mismatches: 15, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
19 67 0.53
20 29 0.23
21 30 0.24
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (19 bp):
TGCGATTAGTAAATCGCAA
Found at i:8070064 original size:19 final size:19
Alignment explanation
Indices: 8070004--8070151 Score: 154
Period size: 19 Copynumber: 7.5 Consensus size: 19
8069994 AGAATCTCGT
8070004 TGCGATTTACTAAATCGCAA
1 TGCGA-TTACTAAATCGCAA
** *
8070024 TGCGAATTAGGAAAATCACAA
1 TGCG-ATTA-CTAAATCGCAA
8070045 TGCGATTACTAAATCGCAA
1 TGCGATTACTAAATCGCAA
8070064 TGCGATTACTAAATCGCAA
1 TGCGATTACTAAATCGCAA
8070083 TGCGATTACGTAAATCGCAA
1 TGCGATTAC-TAAATCGCAA
* **
8070103 TGCAAATTAGGAAAATCGCAA
1 TGC-GATTA-CTAAATCGCAA
* *
8070124 TGCGATTACGT-ATTCGCAT
1 TGCGATTAC-TAAATCGCAA
8070143 TGCGATTAC
1 TGCGATTAC
8070152 GTATTCGCAT
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
19 51 0.47
20 28 0.26
21 29 0.27
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (19 bp):
TGCGATTACTAAATCGCAA
Found at i:8070097 original size:79 final size:80
Alignment explanation
Indices: 8070004--8070180 Score: 247
Period size: 79 Copynumber: 2.2 Consensus size: 80
8069994 AGAATCTCGT
*
8070004 TGCGATTTAC-TAAATCGCAATGCGAATTAGGAAAATCACAATGCGATTAC-TAAATCGCAATGC
1 TGCGATTTACGTAAATCGCAATGCAAATTAGGAAAATCACAATGCGATTACGT-AATCGCAATGC
8070067 GATTAC-TAAATCGCAA
65 GATTACGT-AATCGCAA
* * *
8070083 TGCGA-TTACGTAAATCGCAATGCAAATTAGGAAAATCGCAATGCGATTACGTATTCGCATTGCG
1 TGCGATTTACGTAAATCGCAATGCAAATTAGGAAAATCACAATGCGATTACGTAATCGCAATGCG
* *
8070147 ATTACGTATTCGCAT
66 ATTACGTAATCGCAA
8070162 TGCGATTTACGT-AATCGCA
1 TGCGATTTACGTAAATCGCA
8070181 TTGTGATTTT
Statistics
Matches: 88, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
78 4 0.05
79 76 0.86
80 8 0.09
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (80 bp):
TGCGATTTACGTAAATCGCAATGCAAATTAGGAAAATCACAATGCGATTACGTAATCGCAATGCG
ATTACGTAATCGCAA
Found at i:8070126 original size:60 final size:58
Alignment explanation
Indices: 8070004--8070154 Score: 178
Period size: 60 Copynumber: 2.5 Consensus size: 58
8069994 AGAATCTCGT
* * * *
8070004 TGCGATTTACTAAATCGCAATGCGAATTAGGAAAATCACAATGCGATTACTAAATCGCAA
1 TGCGA-TTACTAAATCGCAATGCG-ATTACGTAAATCACAATGCAATTACAAAATCGCAA
* *
8070064 TGCGATTACTAAATCGCAATGCGATTACGTAAATCGCAATGCAAATTAGGAAAATCGCAA
1 TGCGATTACTAAATCGCAATGCGATTACGTAAATCACAATGC-AATTA-CAAAATCGCAA
* *
8070124 TGCGATTACGT-ATTCGCATTGCGATTACGTA
1 TGCGATTAC-TAAATCGCAATGCGATTACGTA
8070155 TTCGCATTGC
Statistics
Matches: 80, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
58 16 0.20
59 22 0.28
60 41 0.51
61 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (58 bp):
TGCGATTACTAAATCGCAATGCGATTACGTAAATCACAATGCAATTACAAAATCGCAA
Found at i:8070202 original size:21 final size:21
Alignment explanation
Indices: 8070135--8070310 Score: 227
Period size: 21 Copynumber: 8.6 Consensus size: 21
8070125 GCGATTACGT
* *
8070135 ATTCGCATTGCGA-TTACGT-
1 ATTCGCATTGCGATTTTCCTA
* *
8070154 ATTCGCATTGCGATTTACGTA
1 ATTCGCATTGCGATTTTCCTA
*
8070175 A-TCGCATTGTGATTTTCCTA
1 ATTCGCATTGCGATTTTCCTA
* *
8070195 ATTCGCATTGCGATTTACGT-
1 ATTCGCATTGCGATTTTCCTA
8070215 ATTCGCATTGCGATTTTCCTA
1 ATTCGCATTGCGATTTTCCTA
8070236 ATTCGCATTGCGATTTTCCTA
1 ATTCGCATTGCGATTTTCCTA
8070257 ATTCGCATTGCGATTTTCCTA
1 ATTCGCATTGCGATTTTCCTA
* * *
8070278 ATTCGCATAGCGATTTACGT-
1 ATTCGCATTGCGATTTTCCTA
8070298 ATTCGCATTGCGA
1 ATTCGCATTGCGA
8070311 ATTAGGAAAA
Statistics
Matches: 141, Mismatches: 12, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.09
20 53 0.38
21 75 0.53
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.40
Consensus pattern (21 bp):
ATTCGCATTGCGATTTTCCTA
Found at i:8070209 original size:41 final size:41
Alignment explanation
Indices: 8070118--8070310 Score: 284
Period size: 41 Copynumber: 4.8 Consensus size: 41
8070108 ATTAGGAAAA
* * *
8070118 TCGCAATGCGA-TTACGTATTCGCATTGCGA-TTACGT-AT
1 TCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCTAAT
* *
8070156 TCGCATTGCGATTTACGTAATCGCATTGTGATTTTCCTAAT
1 TCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCTAAT
8070197 TCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCTAAT
* *
8070238 TCGCATTGCGATTTTCCTAATTCGCATTGCGATTTTCCTAAT
1 TCGCATTGCGATTTACGT-ATTCGCATTGCGATTTTCCTAAT
*
8070280 TCGCATAGCGATTTACGTATTCGCATTGCGA
1 TCGCATTGCGATTTACGTATTCGCATTGCGA
8070311 ATTAGGAAAA
Statistics
Matches: 139, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
38 10 0.07
39 17 0.12
40 4 0.03
41 70 0.50
42 38 0.27
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.39
Consensus pattern (41 bp):
TCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCTAAT
Found at i:8070280 original size:83 final size:80
Alignment explanation
Indices: 8070118--8070310 Score: 289
Period size: 83 Copynumber: 2.4 Consensus size: 80
8070108 ATTAGGAAAA
* * *
8070118 TCGCAATGCGA-TTACGTATTCGCATTGCGATTACGTATTCGCATTGCGATTTACGTAATCGCAT
1 TCGCATTGCGATTTACGTATTCGCATTGCGATTACCTATTCGCATTGCGATTTACCTAATCGCAT
*
8070182 TGTGATTTTCCTAAT
66 TGCGATTTTCCTAAT
* *
8070197 TCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCTAATTCGCATTGCGATTTTCCTAATTCG
1 TCGCATTGCGATTTACGTATTCGCATTGCGA-TTACCT-ATTCGCATTGCGATTTACCTAA-TCG
8070262 CATTGCGATTTTCCTAAT
63 CATTGCGATTTTCCTAAT
*
8070280 TCGCATAGCGATTTACGTATTCGCATTGCGA
1 TCGCATTGCGATTTACGTATTCGCATTGCGA
8070311 ATTAGGAAAA
Statistics
Matches: 103, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
79 10 0.10
80 19 0.18
81 4 0.04
82 20 0.19
83 50 0.49
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.39
Consensus pattern (80 bp):
TCGCATTGCGATTTACGTATTCGCATTGCGATTACCTATTCGCATTGCGATTTACCTAATCGCAT
TGCGATTTTCCTAAT
Found at i:8070346 original size:83 final size:83
Alignment explanation
Indices: 8070125--8070353 Score: 214
Period size: 83 Copynumber: 2.8 Consensus size: 83
8070115 AAATCGCAAT
** * ** * * *
8070125 GCGA-TTACGTATTCGCATTGCG-ATTA-CGTATTCGCATTGCG-ATTTACGTAATCGCATTGTG
1 GCGATTTACGTATTCGCATTGCGAATTACCAAAATCGCAACGCGAATTTCCGAAATCGCATTGCG
*
8070186 ATTTTCCTAATTCGCATT
66 ATTTTCCTAATTCGCATA
* * * * ** * * *
8070204 GCGATTTACGTATTCGCATTGCGATTTTCCTAATTCGCATTGCGATTTTCCTAATTCGCATTGCG
1 GCGATTTACGTATTCGCATTGCGAATTACCAAAATCGCAACGCGAATTTCCGAAATCGCATTGCG
8070269 ATTTTCCTAATTCGCATA
66 ATTTTCCTAATTCGCATA
** * ** *
8070287 GCGATTTACGTATTCGCATTGCGAATTAGGAAAATCGTAACGCGAATTTGGGAAATCGCAATGCG
1 GCGATTTACGTATTCGCATTGCGAATTACCAAAATCGCAACGCGAATTTCCGAAATCGCATTGCG
8070352 AT
66 AT
8070354 AGTCAGAATC
Statistics
Matches: 120, Mismatches: 26, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
79 4 0.03
80 18 0.15
81 2 0.02
82 13 0.11
83 83 0.69
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (83 bp):
GCGATTTACGTATTCGCATTGCGAATTACCAAAATCGCAACGCGAATTTCCGAAATCGCATTGCG
ATTTTCCTAATTCGCATA
Found at i:8070352 original size:21 final size:21
Alignment explanation
Indices: 8070300--8070352 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
8070290 ATTTACGTAT
*
8070300 TCGCATTGCGAATTAGGAAAA
1 TCGCAATGCGAATTAGGAAAA
* * * *
8070321 TCGTAACGCGAATTTGGGAAA
1 TCGCAATGCGAATTAGGAAAA
8070342 TCGCAATGCGA
1 TCGCAATGCGA
8070353 TAGTCAGAAT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAATTAGGAAAA
Found at i:8071857 original size:4 final size:4
Alignment explanation
Indices: 8071848--8071879 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
8071838 CAAAACTATA
*
8071848 TATT TATT TATA TATT TATT TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT
8071880 ATTAATCTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (4 bp):
TATT
Found at i:8071861 original size:12 final size:12
Alignment explanation
Indices: 8071844--8071879 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
8071834 GTAACAAAAC
8071844 TATATATTTATT
1 TATATATTTATT
8071856 TATATATTTATT
1 TATATATTTATT
*
8071868 TATTTATTTATT
1 TATATATTTATT
8071880 ATTAATCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TATATATTTATT
Found at i:8072940 original size:21 final size:21
Alignment explanation
Indices: 8072910--8072949 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8072900 AATTAGTTAA
* *
8072910 AAAATTAAAGTTAAATTATTT
1 AAAATAAAAGATAAATTATTT
8072931 AAAATAAAAGATAAATTAT
1 AAAATAAAAGATAAATTAT
8072950 ACCTGTGACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (21 bp):
AAAATAAAAGATAAATTATTT
Found at i:8079044 original size:3 final size:3
Alignment explanation
Indices: 8079036--8079135 Score: 200
Period size: 3 Copynumber: 33.3 Consensus size: 3
8079026 TCAATTTCTT
8079036 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8079084 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8079132 TTA T
1 TTA T
8079136 ATTTGAAACT
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 97 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8081545 original size:30 final size:30
Alignment explanation
Indices: 8081474--8081556 Score: 105
Period size: 30 Copynumber: 2.8 Consensus size: 30
8081464 CCCGAAGGAC
* *
8081474 CTATCCAGAGGTCACAAAG-ACCCCGGTAA
1 CTATCCAGAGGTCACAAAGAACCTCGGCAA
*
8081503 CTATCCAGAGGTCATAAAGAACCTCGGCAA
1 CTATCCAGAGGTCACAAAGAACCTCGGCAA
* * *
8081533 CTGTCCATAGGTCCCAAAGAACCT
1 CTATCCAGAGGTCACAAAGAACCT
8081557 AGGTAAACTG
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
29 18 0.39
30 28 0.61
ACGTcount: A:0.34, C:0.30, G:0.19, T:0.17
Consensus pattern (30 bp):
CTATCCAGAGGTCACAAAGAACCTCGGCAA
Found at i:8082925 original size:64 final size:63
Alignment explanation
Indices: 8082792--8082952 Score: 189
Period size: 64 Copynumber: 2.5 Consensus size: 63
8082782 TAATGAAGGT
* * * * *
8082792 ATGCATCGATACACTACACCATGCATCGATGCATAAATCCTATTCGATGTTTGTATTTAATGGGG
1 ATGCATCGATGCACTCCA-TATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAAT-GGA
* * *
8082857 ATGCATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCGATGTTTTCTTTTTAAAT-TA
1 ATGCATCGATGCACTCCATATGCATCGATGCATAAATCCTATTCGATG-TTTCTATTT-AATGGA
* *
8082921 ATGCATCGATGCACTGCATGTGCATCGATGCA
1 ATGCATCGATGCACTCCATATGCATCGATGCA
8082953 CCTTAAACAA
Statistics
Matches: 83, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
64 58 0.70
65 22 0.27
66 3 0.04
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.34
Consensus pattern (63 bp):
ATGCATCGATGCACTCCATATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAATGGA
Found at i:8086340 original size:30 final size:30
Alignment explanation
Indices: 8086269--8086351 Score: 96
Period size: 30 Copynumber: 2.8 Consensus size: 30
8086259 CACGAATGAC
* *
8086269 CTATCCATAGGTCACAAAG-ACCCCGGTAA
1 CTATCCATAGGTCACAAAGAACCTCGGCAA
* * *
8086298 CTATCTAGAGGTCATAAAGAACCTCGGCAA
1 CTATCCATAGGTCACAAAGAACCTCGGCAA
* *
8086328 CTGTCCATAGGTCCCAAAGAACCT
1 CTATCCATAGGTCACAAAGAACCT
8086352 AGGTAAATTG
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
29 16 0.37
30 27 0.63
ACGTcount: A:0.34, C:0.29, G:0.18, T:0.19
Consensus pattern (30 bp):
CTATCCATAGGTCACAAAGAACCTCGGCAA
Found at i:8086367 original size:31 final size:31
Alignment explanation
Indices: 8086329--8086420 Score: 96
Period size: 31 Copynumber: 3.0 Consensus size: 31
8086319 CCTCGGCAAC
* *
8086329 TGTCCATAGGTCCCAAAGAACCTAGGTAAAT
1 TGTCCATATGTCCCAAAGAACATAGGTAAAT
* *** *
8086360 TGTCCATATGTTCCTTTGAACATAGGTATAT
1 TGTCCATATGTCCCAAAGAACATAGGTAAAT
*
8086391 TGTCCATATGTCTCGAAAG-ACATAGGTAAA
1 TGTCCATATGTC-CCAAAGAACATAGGTAAA
8086421 ACCCTCGACT
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
31 45 0.96
32 2 0.04
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (31 bp):
TGTCCATATGTCCCAAAGAACATAGGTAAAT
Found at i:8087672 original size:19 final size:19
Alignment explanation
Indices: 8087648--8087698 Score: 84
Period size: 19 Copynumber: 2.7 Consensus size: 19
8087638 TTTAATGGGG
8087648 ATGCATCGATGCACTCCTT
1 ATGCATCGATGCACTCCTT
*
8087667 ATGCATCGATGTACTCCTT
1 ATGCATCGATGCACTCCTT
*
8087686 ATGCATTGATGCA
1 ATGCATCGATGCA
8087699 TAAATCCTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.24, C:0.25, G:0.18, T:0.33
Consensus pattern (19 bp):
ATGCATCGATGCACTCCTT
Found at i:8087741 original size:83 final size:82
Alignment explanation
Indices: 8087602--8087760 Score: 212
Period size: 83 Copynumber: 1.9 Consensus size: 82
8087592 TTAATGAAGG
* * *
8087602 TATGCATCGATGCATAAATCCTATTCGATGTTTGTATTTAATGGGGATGCATCGATGCACTCCTT
1 TATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAAT-GGAATGCATCGATGCACTCCAT
8087667 ATGCATCGATGTACTCCT
65 ATGCATCGATGTACTCCT
* * * *
8087685 TATGCATTGATGCATAAATCCTATTCGATGTTTTCTTTTTAAAT-TAATGCATCGATGCACTGCA
1 TATGCATCGATGCATAAATCCTATTCGATG-TTTCTATTT-AATGGAATGCATCGATGCACTCCA
*
8087749 TGTGCATCGATG
64 TATGCATCGATG
8087761 CACCTTAAAT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
83 56 0.85
84 7 0.11
85 3 0.05
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (82 bp):
TATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAATGGAATGCATCGATGCACTCCATA
TGCATCGATGTACTCCT
Found at i:8089472 original size:32 final size:31
Alignment explanation
Indices: 8089431--8089555 Score: 117
Period size: 32 Copynumber: 3.9 Consensus size: 31
8089421 AGTCGAGGGT
8089431 TTACCTATGTTCTATGGAACATATGGACAGAA
1 TTACCTATG-TCTATGGAACATATGGACAGAA
* * *
8089463 TTACCTATGTCTTTCGGGACATATGGACAAAA
1 TTACCTATGTCTAT-GGAACATATGGACAGAA
* * **
8089495 TTACCTATGTCTTTTGAGACATATGGACATTA
1 TTACCTATGTCTATGGA-ACATATGGACAGAA
* * *
8089527 -TACCTATATTCTAAGGAGCATATGGACAG
1 TTACCTAT-GTCTATGGAACATATGGACAG
8089556 TTGTCGAGGT
Statistics
Matches: 77, Mismatches: 13, Indels: 7
0.79 0.13 0.07
Matches are distributed among these distances:
31 22 0.29
32 55 0.71
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (31 bp):
TTACCTATGTCTATGGAACATATGGACAGAA
Found at i:8090312 original size:12 final size:12
Alignment explanation
Indices: 8090295--8090337 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
8090285 CGAAAGTTTT
8090295 TACTGTTCATGG
1 TACTGTTCATGG
8090307 TACTGTTCAT--
1 TACTGTTCATGG
* *
8090317 TATTGTTCACGG
1 TACTGTTCATGG
8090329 TACTGTTCA
1 TACTGTTCA
8090338 AGCCGTATAG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
10 8 0.31
12 18 0.69
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (12 bp):
TACTGTTCATGG
Found at i:8097817 original size:18 final size:18
Alignment explanation
Indices: 8097770--8097811 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
8097760 CGATAAATCC
*
8097770 TTGAGAAAAATATTTATT
1 TTGAAAAAAATATTTATT
8097788 TTGAAAAAAATATTTATT
1 TTGAAAAAAATATTTATT
8097806 TT-AAAA
1 TTGAAAA
8097812 CTAATAACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (18 bp):
TTGAAAAAAATATTTATT
Found at i:8097993 original size:2 final size:2
Alignment explanation
Indices: 8097986--8098023 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
8097976 AATAGTTTTA
8097986 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8098024 TACGAAATTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8102444 original size:22 final size:23
Alignment explanation
Indices: 8102404--8102447 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
8102394 CGCAGACTTA
8102404 AATTTGTTGTTTTAATTAAAATT
1 AATTTGTTGTTTTAATTAAAATT
* *
8102427 AATTT-TTTTTTTATTTAAAAT
1 AATTTGTTGTTTTAATTAAAAT
8102448 GGCAAAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (23 bp):
AATTTGTTGTTTTAATTAAAATT
Found at i:8103447 original size:46 final size:47
Alignment explanation
Indices: 8103337--8103459 Score: 194
Period size: 47 Copynumber: 2.6 Consensus size: 47
8103327 GAATAAATGT
*
8103337 ATGCGAACTAGAAATCATGCGGTTAGGTATATTTTCTCGAACAAAGC
1 ATGCGAACTAGAAATCATGCGGTTAGGTTTATTTTCTCGAACAAAGC
*
8103384 ATGCGAACTAGAAATCATGCGGTTATGTTTATTTTCTCGAAC-AAGC
1 ATGCGAACTAGAAATCATGCGGTTAGGTTTATTTTCTCGAACAAAGC
* * *
8103430 ATGCGAATTAGATATCATGCGATTAGGTTT
1 ATGCGAACTAGAAATCATGCGGTTAGGTTT
8103460 TCTTTTTGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
46 30 0.43
47 40 0.57
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (47 bp):
ATGCGAACTAGAAATCATGCGGTTAGGTTTATTTTCTCGAACAAAGC
Found at i:8108097 original size:125 final size:125
Alignment explanation
Indices: 8107871--8108099 Score: 302
Period size: 125 Copynumber: 1.8 Consensus size: 125
8107861 TAGGATATGT
*
8107871 TGGGGCACGACTGAACCCCTATCATGTTGAGATGACAAAACCCAGACCAAAGAGGCATGAAGAAC
1 TGGGGCACGACTGAACCCCTATCATGTTGAGATGACAAAACCAAGACCAAAGAGGCATGAAGAAC
8107936 GAGCCTTACAAATAGAGGTGATGGGGCATTTCGAAGGCCTGCACCAGTATGAGATGATGA
66 GAGCCTTACAAATAGAGGTGATGGGGCATTTCGAAGGCCTGCACCAGTATGAGATGATGA
* ** * **
8107996 TGGGGTACGACTGAACCCAC-ATCATGTTGAGATGATGAGATTAAGACC-AAGAAGGCATTG-AG
1 TGGGGCACGACTGAACCC-CTATCATGTTGAGATGACAAAACCAAGACCAAAG-AGGCA-TGAAG
* * * * *
8108058 AATGAGCCTTACAATTTGAGGTGTTGGGGCATTTTGAAGGCC
63 AACGAGCCTTACAAATAGAGGTGATGGGGCATTTCGAAGGCC
8108100 CATATCAGTA
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
124 3 0.03
125 83 0.93
126 3 0.03
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (125 bp):
TGGGGCACGACTGAACCCCTATCATGTTGAGATGACAAAACCAAGACCAAAGAGGCATGAAGAAC
GAGCCTTACAAATAGAGGTGATGGGGCATTTCGAAGGCCTGCACCAGTATGAGATGATGA
Found at i:8109337 original size:36 final size:36
Alignment explanation
Indices: 8109295--8109416 Score: 111
Period size: 36 Copynumber: 3.4 Consensus size: 36
8109285 AGCAAAGTCA
8109295 ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAACC
1 ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAACC
* * * * * *
8109331 GTCTTAAGCATGCACCAAAGAATAATGAAGCAAACC
1 ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAACC
** * * *
8109367 ATCTTGTGTCTTCA-TCAAAGAGTCGTGAAGGAAATCC
1 ATCTTAAGCCTTCACT-AAAGAGTAGTGAAGCAAA-CC
*
8109404 ATTTTAAGCCTTC
1 ATCTTAAGCCTTC
8109417 TCATAAGAGT
Statistics
Matches: 63, Mismatches: 21, Indels: 3
0.72 0.24 0.03
Matches are distributed among these distances:
36 52 0.83
37 11 0.17
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.25
Consensus pattern (36 bp):
ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAACC
Found at i:8109927 original size:54 final size:54
Alignment explanation
Indices: 8109785--8110476 Score: 900
Period size: 54 Copynumber: 12.9 Consensus size: 54
8109775 AGTGAAGCAA
* * *
8109785 AAGAAGATTTTCGAGTTCCATACTCCCTAGAGAAAAAGGGAGCGAACCCGTTTG
1 AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * *
8109839 AAG-A-TTGTTCGAGTTTCATACTCCCT-GAAGAAAGAGGGAGCGAACCCGTTTG
1 AAGAAGATGTCCGAGTTCCATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTTG
* * ** * * *
8109891 AAGAAGAGGTACGAGTTTTATACTCCTTAAAGAAAGAGGGAGCGAACCAGTTTG
1 AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * * *
8109945 AAGAAGATGTCCTAGTTCTATACTCCCTAGAGAAAGAGGAAGCGAACTCGTTTG
1 AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* *
8109999 AAGAAAATATCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
1 AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* *
8110053 AAGAAGATGTACGAGTTCCATACGCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
1 AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
*
8110107 AAGAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
1 AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* *
8110161 AAGAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGAGGAAGCGAACCCGTTTG
1 AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* *
8110215 AAGAAGATTTCCGAGTTCCATACTTCCTAGAGAAAGAGGGAGCGAACCCG--TG
1 AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * * * *
8110267 TA-AAGATATCCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTG
1 AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
**
8110320 AAG-AGATGTTTGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
1 AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * * *
8110373 AAGAAGATTTTCGAGTTCCATACTTCCTAGAGAAAGAGGGAGTGAACCCCG--T-
1 AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAA-CCCGTTTG
* * * * *
8110425 AAGAAGATTATTCGAGTTCTATACTGCCTGAAAGAAAGAGGGAGCGAACCCG
1 AAGAAGA-TGTCCGAGTTCCATACTCCCT-AGAGAAAGAGGGAGCGAACCCG
8110477 ATTGTTGAAG
Statistics
Matches: 567, Mismatches: 60, Indels: 23
0.87 0.09 0.04
Matches are distributed among these distances:
51 43 0.08
52 55 0.10
53 75 0.13
54 390 0.69
55 4 0.01
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.21
Consensus pattern (54 bp):
AAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
Found at i:8110596 original size:55 final size:55
Alignment explanation
Indices: 8110427--8110698 Score: 338
Period size: 55 Copynumber: 4.9 Consensus size: 55
8110417 AACCCCGTAA
* * * *
8110427 GAAGATTATTCGAGT-TCTATACTGC-CTGAAAGAAAGAGGGAGC-GAACCCGATTGTT
1 GAAGATTGTTCGAGTCT-TATACT-CTCTG-AAGAAATAGGGAGCAG-ACACGATCGTT
*
8110483 GAAGATTGTTCGAGTCTTATACTCTCTCTGAAGAAATAGGGAGTAGACACGA-CTGTT
1 GAAGATTGTTCGAGTCTTATA--CTCTCTGAAGAAATAGGGAGCAGACACGATC-GTT
8110540 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATCGTT
* * *
8110595 GAAGATTGTTCGAGTCTTATACTCTTTGAAGGAATAGGGAGCAGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATCGTT
* * *
8110650 GAAGATTGTTTGAGTCTTATACTCTCTGAA-AGAATAGAGAGCGGACACG
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGA-AATAGGGAGCAGACACG
8110699 TTTTCCGAAG
Statistics
Matches: 194, Mismatches: 14, Indels: 17
0.86 0.06 0.08
Matches are distributed among these distances:
55 126 0.65
56 19 0.10
57 43 0.22
58 6 0.03
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (55 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGAGCAGACACGATCGTT
Found at i:8112944 original size:22 final size:23
Alignment explanation
Indices: 8112904--8112947 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
8112894 CGCAGACTTA
8112904 AATTTGTTGTTTTAATTAAAATT
1 AATTTGTTGTTTTAATTAAAATT
* *
8112927 AATTT-TTTTTTTATTTAAAAT
1 AATTTGTTGTTTTAATTAAAAT
8112948 GGCAAAACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (23 bp):
AATTTGTTGTTTTAATTAAAATT
Found at i:8118459 original size:22 final size:21
Alignment explanation
Indices: 8118434--8118492 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
8118424 TAAATATTTT
8118434 AATTCTAAATCTTAAAATATAA
1 AATT-TAAATCTTAAAATATAA
* * *
8118456 AATTTTATATCTTAAGATGTAA
1 AA-TTTAAATCTTAAAATATAA
* *
8118478 AACTTAAATTTTAAA
1 AATTTAAATCTTAAA
8118493 TTTAAACCCT
Statistics
Matches: 29, Mismatches: 7, Indels: 3
0.74 0.18 0.08
Matches are distributed among these distances:
21 9 0.31
22 18 0.62
23 2 0.07
ACGTcount: A:0.49, C:0.07, G:0.03, T:0.41
Consensus pattern (21 bp):
AATTTAAATCTTAAAATATAA
Found at i:8118656 original size:19 final size:20
Alignment explanation
Indices: 8118632--8118682 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
8118622 AATGACCAAT
8118632 AAAATCGCAACGCGATAT-C
1 AAAATCGCAACGCGATATAC
* *
8118651 AAAATCGCAACGCGATTTAG
1 AAAATCGCAACGCGATATAC
8118671 AAAATCGCAACG
1 AAAATCGCAACG
8118683 TTAAAAAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.43, C:0.24, G:0.18, T:0.16
Consensus pattern (20 bp):
AAAATCGCAACGCGATATAC
Found at i:8118676 original size:20 final size:20
Alignment explanation
Indices: 8118632--8118826 Score: 86
Period size: 20 Copynumber: 9.6 Consensus size: 20
8118622 AATGACCAAT
* *
8118632 AAAATCGCAACGCGATAT-C
1 AAAATCGCAACGCGATTTAG
8118651 AAAATCGCAACGCGATTTAG
1 AAAATCGCAACGCGATTTAG
** ***
8118671 AAAATCGCAACGTTAAAAAG
1 AAAATCGCAACGCGATTTAG
** ***
8118691 AAAATCGCAACGTTAAAAAG
1 AAAATCGCAACGCGATTTAG
* * **
8118711 AAAATCGCAACGCAAGCTTCC
1 AAAATCGCAACGCGA-TTTAG
**
8118732 AAGTTCGCAACGCGATTTAGAAG
1 AAAATCGCAACGCGATTT---AG
* * *
8118755 AAAATCGCAATGCGACTGAG
1 AAAATCGCAACGCGATTTAG
* * * *
8118775 AGAATCGCAATGCGACTGAG
1 AAAATCGCAACGCGATTTAG
* * *
8118795 AGAATCGCAATGCGATTTAT
1 AAAATCGCAACGCGATTTAG
*
8118815 AGAATCGCAACG
1 AAAATCGCAACG
8118827 TTGAAAATAA
Statistics
Matches: 141, Mismatches: 30, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
19 17 0.12
20 99 0.70
21 12 0.09
23 13 0.09
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.17
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTAG
Found at i:8118945 original size:6 final size:6
Alignment explanation
Indices: 8118934--8119043 Score: 213
Period size: 6 Copynumber: 18.5 Consensus size: 6
8118924 GACACGTATT
8118934 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
8118982 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG
8119030 ACCACG ACC-CG ACC
1 ACCACG ACCACG ACC
8119044 CGAGACGAGA
Statistics
Matches: 104, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
5 5 0.05
6 99 0.95
ACGTcount: A:0.33, C:0.51, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:8119755 original size:6 final size:6
Alignment explanation
Indices: 8119734--8119770 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
8119724 TCTCGTCTCG
8119734 GGTCG- GGTCG- GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
8119771 AATACGTGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 10 0.32
6 21 0.68
ACGTcount: A:0.00, C:0.16, G:0.54, T:0.30
Consensus pattern (6 bp):
GGTCGT
Found at i:8119873 original size:20 final size:20
Alignment explanation
Indices: 8119848--8119887 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8119838 TTTTTAACTA
8119848 TTCTTTTGACCGTTGCGATT
1 TTCTTTTGACCGTTGCGATT
* *
8119868 TTCTTTTTAGCGTTGCGATT
1 TTCTTTTGACCGTTGCGATT
8119888 CTCTCAGTCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.10, C:0.17, G:0.20, T:0.53
Consensus pattern (20 bp):
TTCTTTTGACCGTTGCGATT
Found at i:8119903 original size:20 final size:20
Alignment explanation
Indices: 8119880--8120030 Score: 185
Period size: 20 Copynumber: 7.4 Consensus size: 20
8119870 CTTTTTAGCG
*
8119880 TTGCGATTCTCTCAGTCGCA
1 TTGCGATTCTCTCAATCGCA
* *
8119900 TTGCGATTCTCTCAGTCGCG
1 TTGCGATTCTCTCAATCGCA
*
8119920 TTGCGATTCTCTCAGTCGCA
1 TTGCGATTCTCTCAATCGCA
* *
8119940 TTGCGATTTTCTTCTAAATCGCG
1 TTGCGA--TTC-TCTCAATCGCA
*
8119963 TTGCGACTCTCTCAATCGCA
1 TTGCGATTCTCTCAATCGCA
* *
8119983 TTGCGATTCTATAAATCGCA
1 TTGCGATTCTCTCAATCGCA
*
8120003 TTGCGATTCTATCAATCGCA
1 TTGCGATTCTCTCAATCGCA
8120023 TTGCGATT
1 TTGCGATT
8120031 TTCTTCTAAA
Statistics
Matches: 116, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
20 97 0.84
21 2 0.02
22 3 0.03
23 14 0.12
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (20 bp):
TTGCGATTCTCTCAATCGCA
Found at i:8119904 original size:40 final size:40
Alignment explanation
Indices: 8119860--8120051 Score: 204
Period size: 40 Copynumber: 4.7 Consensus size: 40
8119850 CTTTTGACCG
** * *
8119860 TTGCGATTTTCTTTTTAGCGTTGCGATTCTCTCAGTCGCA
1 TTGCGATTTTCTTAATCGCGTTGCGATTCTCTCAATCGCA
* * * *
8119900 TTGCGATTCTCTCAGTCGCGTTGCGATTCTCTCAGTCGCA
1 TTGCGATTTTCTTAATCGCGTTGCGATTCTCTCAATCGCA
*
8119940 TTGCGATTTTCTTCTAAATCGCGTTGCGACTCTCTCAATCGCA
1 TTGCGATTTTC-T-T-AATCGCGTTGCGATTCTCTCAATCGCA
* * * * *
8119983 TTGCGATTCTATAAATCGCATTGCGATTCTATCAATCGCA
1 TTGCGATTTTCTTAATCGCGTTGCGATTCTCTCAATCGCA
8120023 TTGCGATTTTCTTCTAAATCGCGTTGCGA
1 TTGCGATTTTC-T-T-AATCGCGTTGCGA
8120052 ACTTGGAAGC
Statistics
Matches: 126, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
40 78 0.62
41 2 0.02
42 1 0.01
43 45 0.36
ACGTcount: A:0.18, C:0.25, G:0.19, T:0.39
Consensus pattern (40 bp):
TTGCGATTTTCTTAATCGCGTTGCGATTCTCTCAATCGCA
Found at i:8119974 original size:83 final size:83
Alignment explanation
Indices: 8119877--8120051 Score: 278
Period size: 83 Copynumber: 2.1 Consensus size: 83
8119867 TTTCTTTTTA
* * * * * * * *
8119877 GCGTTGCGATTCTCTCAGTCGCATTGCGATTCTCTCAGTCGCGTTGCGATTCTCTCAGTCGCATT
1 GCGTTGCGACTCTCTCAATCGCATTGCGATTCTATAAATCGCATTGCGATTCTATCAATCGCATT
8119942 GCGATTTTCTTCTAAATC
66 GCGATTTTCTTCTAAATC
8119960 GCGTTGCGACTCTCTCAATCGCATTGCGATTCTATAAATCGCATTGCGATTCTATCAATCGCATT
1 GCGTTGCGACTCTCTCAATCGCATTGCGATTCTATAAATCGCATTGCGATTCTATCAATCGCATT
8120025 GCGATTTTCTTCTAAATC
66 GCGATTTTCTTCTAAATC
8120043 GCGTTGCGA
1 GCGTTGCGA
8120052 ACTTGGAAGC
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.36
Consensus pattern (83 bp):
GCGTTGCGACTCTCTCAATCGCATTGCGATTCTATAAATCGCATTGCGATTCTATCAATCGCATT
GCGATTTTCTTCTAAATC
Found at i:8120090 original size:20 final size:20
Alignment explanation
Indices: 8120065--8120116 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
8120055 TGGAAGCTCG
*
8120065 CGTTGCGATTTT-TTTTTGAC
1 CGTTGCGATTTTCTTTTT-AA
8120085 CGTTGCGATTTTCTTTTTAA
1 CGTTGCGATTTTCTTTTTAA
8120105 CGTTGCGATTTT
1 CGTTGCGATTTT
8120117 GATATCGCGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 25 0.83
21 5 0.17
ACGTcount: A:0.12, C:0.15, G:0.19, T:0.54
Consensus pattern (20 bp):
CGTTGCGATTTTCTTTTTAA
Found at i:8120473 original size:15 final size:15
Alignment explanation
Indices: 8120453--8120495 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
8120443 ATATGTATCA
8120453 TTTTCTTTCTTTAAT
1 TTTTCTTTCTTTAAT
* *
8120468 TTTTCTCTCATTTTAT
1 TTTTCTTTC-TTTAAT
*
8120484 TTTTATTTCTTT
1 TTTTCTTTCTTT
8120496 TTTTCATTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTCTTTCTTTAAT
Found at i:8120496 original size:15 final size:15
Alignment explanation
Indices: 8120453--8120496 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8120443 ATATGTATCA
*
8120453 TTTTCTTTCTTTAAT
1 TTTTCTTTCTTTTAT
*
8120468 TTTTCTCTCATTTTAT
1 TTTTCTTTC-TTTTAT
*
8120484 TTTTATTTCTTTT
1 TTTTCTTTCTTTT
8120497 TTTCATTGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTCTTTCTTTTAT
Found at i:8124906 original size:2 final size:2
Alignment explanation
Indices: 8124899--8124964 Score: 132
Period size: 2 Copynumber: 33.0 Consensus size: 2
8124889 AAAAATATTA
8124899 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8124941 AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
8124965 TACCCACATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8126526 original size:224 final size:222
Alignment explanation
Indices: 8126165--8126778 Score: 886
Period size: 224 Copynumber: 2.8 Consensus size: 222
8126155 CTTACTCTGA
** * *
8126165 AGGGAATATCAAATCTTGAAAGAA-AGTGATCTGTTCCGCTTAC-TCTGAAGAAAATATCAGATT
1 AGGGAATATCAAATCTTGAAA-AAGA-TGATCTGTTCCGCTT-CTTCTG-AGGGAATATCAAATC
* *
8126228 TGTGAG-G-TG-T--A-GGAAT-TGGCAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATAT
62 TGTGAGAGTTGATCAATTGAATCTGGCAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCT
*
8126286 TGAAAAAGAGGGATTTGTTCCGCTTCTTCTGAGGGAATATCATATATGTGAAAGTTGATCAATTG
127 TGAAAAAGAGGGATTTGTTCCGCTTCTTCTGAGGGAATATCATATATGTGAAAGTTAATCAATTG
*
8126351 AATTGTGGAAAGACTTGTTCCGCTGTCACTC
192 AATCGTGGAAAGACTTGTTCCGCTGTCACTC
*
8126382 AGGGAATATCAAATCTTGAAAAAGATAGATCTGTTCCGCTTCTTCTGAGGGAATATCATATCTGT
1 AGGGAATATCAAATCTTGAAAAAGAT-GATCTGTTCCGCTTCTTCTGAGGGAATATCAAATCTGT
* * *
8126447 GAGAGTTGATCAATTGAATCGTGGCATGACTTGTTCTGCTGTCACTCAAGGAATATCAAATCTTG
65 GAGAGTTGATCAATTGAATC-TGGCAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTG
* *
8126512 AAAAAGAGGGATTTGTTCCGCTTCTTCTGAGGGAATATCAGATATGTGAGAGTTAATCAATTGAA
129 AAAAAGAGGGATTTGTTCCGCTTCTTCTGAGGGAATATCATATATGTGAAAGTTAATCAATTGAA
* *
8126577 TCGTGGCAAGACTTGTTTCGCTGTCACTC
194 TCGTGGAAAGACTTGTTCCGCTGTCACTC
* * *
8126606 AGGGAATATCAAATCTTGAAAAAGAGGGATATGTTCCTCTTCTTCTGAGGGAATATCAAATCTGT
1 AGGGAATATCAAATCTTGAAAAAGA-TGATCTGTTCCGCTTCTTCTGAGGGAATATCAAATCTGT
8126671 GAGAGTTGATCAATTGAATCATGGCAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTG
65 GAGAGTTGATCAATTGAATC-TGGCAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTG
* * * *
8126736 ATAAATAGGGATCTGTTCTGCTTCTTCTGAGGGAATATCATAT
129 AAAAAGAGGGATTTGTTCCGCTTCTTCTGAGGGAATATCATAT
8126779 CTGATTTGCT
Statistics
Matches: 357, Mismatches: 28, Indels: 17
0.89 0.07 0.04
Matches are distributed among these distances:
216 21 0.06
217 41 0.11
218 2 0.01
219 1 0.00
221 1 0.00
222 4 0.01
224 287 0.80
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (222 bp):
AGGGAATATCAAATCTTGAAAAAGATGATCTGTTCCGCTTCTTCTGAGGGAATATCAAATCTGTG
AGAGTTGATCAATTGAATCTGGCAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAA
AAAGAGGGATTTGTTCCGCTTCTTCTGAGGGAATATCATATATGTGAAAGTTAATCAATTGAATC
GTGGAAAGACTTGTTCCGCTGTCACTC
Found at i:8126781 original size:112 final size:112
Alignment explanation
Indices: 8126244--8126781 Score: 869
Period size: 112 Copynumber: 4.8 Consensus size: 112
8126234 GTGTAGGAAT
* *
8126244 TGGCAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATATTGAAAAAGAGGGATTTGTTCCGC
1 TGGCAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAAAGAGGGATCTGTTCCGC
* * *
8126309 TTCTTCTGAGGGAATATCATATATGTGAAAGTTGATCAATTGAATTG
66 TTCTTCTGAGGGAATATCATATCTGTGAGAGTTGATCAATTGAATCG
* **
8126356 TGGAAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAAAGATAGATCTGTTCCGC
1 TGGCAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAAAGAGGGATCTGTTCCGC
8126421 TTCTTCTGAGGGAATATCATATCTGTGAGAGTTGATCAATTGAATCG
66 TTCTTCTGAGGGAATATCATATCTGTGAGAGTTGATCAATTGAATCG
* * * *
8126468 TGGCATGACTTGTTCTGCTGTCACTCAAGGAATATCAAATCTTGAAAAAGAGGGATTTGTTCCGC
1 TGGCAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAAAGAGGGATCTGTTCCGC
* * *
8126533 TTCTTCTGAGGGAATATCAGATATGTGAGAGTTAATCAATTGAATCG
66 TTCTTCTGAGGGAATATCATATCTGTGAGAGTTGATCAATTGAATCG
* * *
8126580 TGGCAAGACTTGTTTCGCTGTCACTCAGGGAATATCAAATCTTGAAAAAGAGGGATATGTTCCTC
1 TGGCAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAAAGAGGGATCTGTTCCGC
* *
8126645 TTCTTCTGAGGGAATATCAAATCTGTGAGAGTTGATCAATTGAATCA
66 TTCTTCTGAGGGAATATCATATCTGTGAGAGTTGATCAATTGAATCG
* * *
8126692 TGGCAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGATAAATAGGGATCTGTTCTGC
1 TGGCAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAAAGAGGGATCTGTTCCGC
8126757 TTCTTCTGAGGGAATATCATATCTG
66 TTCTTCTGAGGGAATATCATATCTG
8126782 ATTTGCTTCA
Statistics
Matches: 391, Mismatches: 35, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
112 391 1.00
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (112 bp):
TGGCAAGACTTGTTCCGCTGTCACTCAGGGAATATCAAATCTTGAAAAAGAGGGATCTGTTCCGC
TTCTTCTGAGGGAATATCATATCTGTGAGAGTTGATCAATTGAATCG
Found at i:8126830 original size:37 final size:37
Alignment explanation
Indices: 8126780--8126855 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
8126770 ATATCATATC
*
8126780 TGATTTGCTTCACTACTCTTTGGTGAAGG-TTTAAGAT
1 TGATTTGCTTCACTACTCTTTGATGAAGGCTTT-AGAT
8126817 TGATTTGCTTCACTACTCTTTGATGAAGGCTTTAGAT
1 TGATTTGCTTCACTACTCTTTGATGAAGGCTTTAGAT
8126854 TG
1 TG
8126856 CTTGAAGGAC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
37 34 0.92
38 3 0.08
ACGTcount: A:0.21, C:0.14, G:0.21, T:0.43
Consensus pattern (37 bp):
TGATTTGCTTCACTACTCTTTGATGAAGGCTTTAGAT
Found at i:8126917 original size:42 final size:42
Alignment explanation
Indices: 8126859--8127064 Score: 243
Period size: 42 Copynumber: 4.9 Consensus size: 42
8126849 TAGATTGCTT
* * * * * *
8126859 GAAGGACTTAATCATCATACTTGAAAGGCTTATTGATGACCC
1 GAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGACCC
* *
8126901 GAAGGATTTAAGCATCATGCTCGGAAGACTTACTGATGACCT
1 GAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGACCC
* * **
8126943 GAAGGATTTAAGCCTCATGCTCGAAAGGA-TTACAGACAACCC
1 GAAGGATTTAAGCATCATGCTCGAAA-GACTTACTGATGACCC
* * *
8126985 GAAGAATTTAAACATCATGCTCGAAAGACTTATTGATGACCC
1 GAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGACCC
* *
8127027 AAAGGATTTAAGCATCATGCTCGGAAGACTTACTGATG
1 GAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATG
8127065 GACTTGCTTC
Statistics
Matches: 136, Mismatches: 26, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
41 2 0.01
42 132 0.97
43 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.25
Consensus pattern (42 bp):
GAAGGATTTAAGCATCATGCTCGAAAGACTTACTGATGACCC
Found at i:8127344 original size:43 final size:43
Alignment explanation
Indices: 8127297--8127395 Score: 135
Period size: 43 Copynumber: 2.3 Consensus size: 43
8127287 TTCGTCATGA
* ** * *
8127297 AGTTGAAACCGTGGATGTGTGGGCACGATATCCTCCGTCGTGG
1 AGTTGAAATCGTGGATCCGTGGACACGATATCCTCCGTCGTAG
* *
8127340 AGTTGAAATCGTGGATCCGTTGATACGATATCCTCCGTCGTAG
1 AGTTGAAATCGTGGATCCGTGGACACGATATCCTCCGTCGTAG
8127383 AGTTGAAATCGTG
1 AGTTGAAATCGTG
8127396 AATGGCCCCT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.28
Consensus pattern (43 bp):
AGTTGAAATCGTGGATCCGTGGACACGATATCCTCCGTCGTAG
Found at i:8127673 original size:43 final size:42
Alignment explanation
Indices: 8127624--8127734 Score: 141
Period size: 43 Copynumber: 2.6 Consensus size: 42
8127614 TGATTCTCTT
*
8127624 CGTCGTGAAGTTGAAATCGTGGATGTGTGGGCACGATATCCTC
1 CGTCGTGAA-TTGAAATCGTGGATGCGTGGGCACGATATCCTC
* * * * *
8127667 TGTCGTGGATTTGAAATCGTGGATCCGTTGGTACGATATCCTC
1 CGTCGT-GAATTGAAATCGTGGATGCGTGGGCACGATATCCTC
8127710 CGTCGTGGAATTGAAATCGTGGATG
1 CGTCGT-GAATTGAAATCGTGGATG
8127735 GCCCCTTCGT
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
43 56 0.97
44 2 0.03
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.31
Consensus pattern (42 bp):
CGTCGTGAATTGAAATCGTGGATGCGTGGGCACGATATCCTC
Found at i:8127704 original size:335 final size:335
Alignment explanation
Indices: 8127092--8127853 Score: 1292
Period size: 335 Copynumber: 2.3 Consensus size: 335
8127082 TGAAGGCTTA
* *
8127092 ACTTGAATATCCTTCGTCGTGAAGTTGAAATCCAAGCTTGTGTTGTTTCGAGTCCAATATCCTTC
1 ACTTGAATATCCTTCGTCGTGAAGTTAAAATCCAAGCTTGTGTTGTTTTGAGTCCAATATCCTTC
* * *
8127157 ATTGTGAAGTTGAAATTGGCTCTAAAACTGGAAATTTTATTGACAGACACTCCTTCTTTGAGTTG
66 GTTGTGAAGTTGAAATTGGCTCTAAAACTGGAAAGTTTATTGACAAACACTCCTTCTTTGAGTTG
8127222 GATATCCTTCGTCGTGAAGTTGAAATCCAATCTAGAGATTGATGCTGCTTGTGTGTACGATTCCC
131 GATATCCTTCGTCGTGAAGTTGAAATCCAATCTAGAGATTGATGCTGCTTGTGTGTACGATTCCC
8127287 TTCGTCATGAAGTTGAAACCGTGGATGTGTGGGCACGATATCCTCCGTCGTGGAGTTGAAATCGT
196 TTCGTCATGAAGTTGAAACCGTGGATGTGTGGGCACGATATCCTCCGTCGTGGAGTTGAAATCGT
*
8127352 GGATCCGTTGATACGATATCCTCCGTCGTAGAGTTGAAATCGTGAATGGCCCCTTCGTCGTGAAG
261 GGATCCGTTGATACGATATCCTCCGTCGTAGAATTGAAATCGTGAATGGCCCCTTCGTCGTGAAG
8127417 TTGAGCCTTG
326 TTGAGCCTTG
*
8127427 ACTTGAATATCATTCGTCGTGAAGTTAAAATCCAAGCTTGTGTTGTTTTGAGTCCAATATCCTTC
1 ACTTGAATATCCTTCGTCGTGAAGTTAAAATCCAAGCTTGTGTTGTTTTGAGTCCAATATCCTTC
* * *
8127492 GTCGTGAAGTTGAAATTGGCTCTGAAACTGGAAAGTTTATTGACAAACACTTCTTCTTTGAGTTG
66 GTTGTGAAGTTGAAATTGGCTCTAAAACTGGAAAGTTTATTGACAAACACTCCTTCTTTGAGTTG
* * *
8127557 GATATCCTTCGTCGTGAAGTTGAAATCCAATCTAGAGATTGATGTTGCTTGTGTGTATGATTCTC
131 GATATCCTTCGTCGTGAAGTTGAAATCCAATCTAGAGATTGATGCTGCTTGTGTGTACGATTCCC
* * * *
8127622 TTCGTCGTGAAGTTGAAATCGTGGATGTGTGGGCACGATATCCTCTGTCGTGGATTTGAAATCGT
196 TTCGTCATGAAGTTGAAACCGTGGATGTGTGGGCACGATATCCTCCGTCGTGGAGTTGAAATCGT
* * * *
8127687 GGATCCGTTGGTACGATATCCTCCGTCGTGGAATTGAAATCGTGGATGGCCCCTTCGTTGTGAAG
261 GGATCCGTTGATACGATATCCTCCGTCGTAGAATTGAAATCGTGAATGGCCCCTTCGTCGTGAAG
8127752 TTGAGCCTTG
326 TTGAGCCTTG
* *
8127762 ACTTGAATATCCTTCGTCGTGAAGTTGAAAA-CCAAGCTTGTGCTATTTTGAGTCCAATATCCTT
1 ACTTGAATATCCTTCGTCGTGAAGTT-AAAATCCAAGCTTGTGTTGTTTTGAGTCCAATATCCTT
*
8127826 CGTTGTGAAGTTGAAATTGACTCTAAAA
65 CGTTGTGAAGTTGAAATTGGCTCTAAAA
8127854 ACTGTAAAAA
Statistics
Matches: 399, Mismatches: 27, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
335 395 0.99
336 4 0.01
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (335 bp):
ACTTGAATATCCTTCGTCGTGAAGTTAAAATCCAAGCTTGTGTTGTTTTGAGTCCAATATCCTTC
GTTGTGAAGTTGAAATTGGCTCTAAAACTGGAAAGTTTATTGACAAACACTCCTTCTTTGAGTTG
GATATCCTTCGTCGTGAAGTTGAAATCCAATCTAGAGATTGATGCTGCTTGTGTGTACGATTCCC
TTCGTCATGAAGTTGAAACCGTGGATGTGTGGGCACGATATCCTCCGTCGTGGAGTTGAAATCGT
GGATCCGTTGATACGATATCCTCCGTCGTAGAATTGAAATCGTGAATGGCCCCTTCGTCGTGAAG
TTGAGCCTTG
Found at i:8128086 original size:32 final size:32
Alignment explanation
Indices: 8128012--8128073 Score: 106
Period size: 32 Copynumber: 1.9 Consensus size: 32
8128002 TTGCATCAGG
* *
8128012 ATGTTGAATCCCCAAATATGCCCCAATATTCA
1 ATGTTGAATCTCCAAATATGCCCCAACATTCA
8128044 ATGTTGAATCTCCAAATATGCCCCAACATT
1 ATGTTGAATCTCCAAATATGCCCCAACATT
8128074 TGTTGTTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.34, C:0.27, G:0.10, T:0.29
Consensus pattern (32 bp):
ATGTTGAATCTCCAAATATGCCCCAACATTCA
Found at i:8129130 original size:10 final size:10
Alignment explanation
Indices: 8129115--8129185 Score: 71
Period size: 10 Copynumber: 7.5 Consensus size: 10
8129105 GATTATCGTC
8129115 TCTTTTTCTT
1 TCTTTTTCTT
8129125 TCTTTTTCTT
1 TCTTTTTCTT
8129135 TCTTTTT-TT
1 TCTTTTTCTT
8129144 TC-TTTTCTT
1 TCTTTTTCTT
*
8129153 T-TTTCTCTT
1 TCTTTTTCTT
* *
8129162 TGTTTCTC-T
1 TCTTTTTCTT
8129171 T-TTTTTCTTT
1 TCTTTTTC-TT
8129181 TCTTT
1 TCTTT
8129186 AATTTCTGTT
Statistics
Matches: 53, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
8 9 0.17
9 16 0.30
10 25 0.47
11 3 0.06
ACGTcount: A:0.00, C:0.18, G:0.01, T:0.80
Consensus pattern (10 bp):
TCTTTTTCTT
Found at i:8129203 original size:46 final size:44
Alignment explanation
Indices: 8129119--8129221 Score: 127
Period size: 46 Copynumber: 2.3 Consensus size: 44
8129109 ATCGTCTCTT
** *
8129119 TTTCTTTCTTTTTCTTTCTTTTTTTTCTTTTCTTTTTTCTCTTTG
1 TTTCTTT-TTTTTCTTTCTTTAATTTCTTTTCTATTTTCTCTTTG
*
8129164 TTTCTCTTTTTTTCTTTTCTTTAATTTCTGTTT-TATTTTCTCTTTT
1 TTTCT-TTTTTTTC-TTTCTTTAATTTCT-TTTCTATTTTCTCTTTG
8129210 TTTCTTTTTTTT
1 TTTCTTTTTTTT
8129222 GCTCTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
45 18 0.35
46 30 0.59
47 3 0.06
ACGTcount: A:0.03, C:0.16, G:0.02, T:0.80
Consensus pattern (44 bp):
TTTCTTTTTTTTCTTTCTTTAATTTCTTTTCTATTTTCTCTTTG
Found at i:8129214 original size:10 final size:10
Alignment explanation
Indices: 8129113--8129226 Score: 63
Period size: 10 Copynumber: 10.5 Consensus size: 10
8129103 TCGATTATCG
8129113 TCTCTTTTTCT
1 TCTCTTTTT-T
8129124 T-TCTTTTTCT
1 TCTCTTTTT-T
8129134 T-TCTTTTTTT
1 TCTC-TTTTTT
*
8129144 TCTTTTCTTTTT
1 TC-TCT-TTTTT
*
8129156 TCTCTTTGTT
1 TCTCTTTTTT
8129166 TCTCTTTTTT
1 TCTCTTTTTT
*
8129176 TCTTTTCTTTAATT
1 TC---TCTTT-TTT
*
8129190 TCTGTTTTATTT
1 TCT-CTTT-TTT
8129202 TCTCTTTTTT
1 TCTCTTTTTT
8129212 TCT-TTTTTT
1 TCTCTTTTTT
8129221 TGCTCT
1 T-CTCT
8129227 GTGTTTTTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 22
0.74 0.07 0.19
Matches are distributed among these distances:
9 7 0.08
10 37 0.44
11 14 0.17
12 17 0.20
13 5 0.06
14 4 0.05
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.77
Consensus pattern (10 bp):
TCTCTTTTTT
Found at i:8129232 original size:36 final size:35
Alignment explanation
Indices: 8129127--8129248 Score: 110
Period size: 36 Copynumber: 3.6 Consensus size: 35
8129117 TTTTTCTTTC
*
8129127 TTTTTCTTTCT-TTTTTTTCTTTTCTTT--TTTCT-
1 TTTTT-TTTCTCTTTTTTTCTTTTCTTTAATCTCTG
* * *
8129159 CTTTGTTTCTCTTTTTTTCTTTTCTTTAATTTCTG
1 TTTTTTTTCTCTTTTTTTCTTTTCTTTAATCTCTG
* ** *
8129194 TTTTATTTTCTCTTTTTTTCTTTTTTTTGCTCTGTG
1 TTTT-TTTTCTCTTTTTTTCTTTTCTTTAATCTCTG
*
8129230 TTTTTTTTCT-TTTTGTTCT
1 TTTTTTTTCTCTTTTTTTCT
8129249 GATTGGATCT
Statistics
Matches: 75, Mismatches: 10, Indels: 8
0.81 0.11 0.09
Matches are distributed among these distances:
31 5 0.07
32 19 0.25
34 13 0.17
35 9 0.12
36 29 0.39
ACGTcount: A:0.02, C:0.15, G:0.05, T:0.78
Consensus pattern (35 bp):
TTTTTTTTCTCTTTTTTTCTTTTCTTTAATCTCTG
Found at i:8129233 original size:22 final size:22
Alignment explanation
Indices: 8129207--8129249 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
8129197 TATTTTCTCT
*
8129207 TTTTTTCTTTTTTTTGCTCTGTG
1 TTTTTT-TTCTTTTTGCTCTGTG
*
8129230 TTTTTTTTCTTTTTGTTCTG
1 TTTTTTTTCTTTTTGCTCTG
8129250 ATTGGATCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.00, C:0.12, G:0.12, T:0.77
Consensus pattern (22 bp):
TTTTTTTTCTTTTTGCTCTGTG
Found at i:8129249 original size:56 final size:55
Alignment explanation
Indices: 8129117--8129249 Score: 121
Period size: 56 Copynumber: 2.3 Consensus size: 55
8129107 TTATCGTCTC
* * *
8129117 TTTTTCTTTCTTTTTCTT-TCTTTTTTTTCTTTTCTTTTTTCTCTTTGTTTCTCTTT
1 TTTTT-TTTCTTTTT-TTCTGTTTTTTTTCTTCTCTTTTTTCTCTTTGTTTCTCTTG
* *
8129173 TTTTCTTTTCTTTAATTTCTGTTTTATTTTC-TCT-TTTTTTCT-TTTTTTTGCTCTGTG
1 TTTT-TTTTCTTT-TTTTCTGTTTT-TTTTCTTCTCTTTTTTCTCTTTGTTT-CTCT-TG
8129230 TTTTTTTTCTTTTTGTTCTG
1 TTTTTTTTCTTTTT-TTCTG
8129250 ATTGGATCTT
Statistics
Matches: 64, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
55 7 0.11
56 38 0.59
57 14 0.22
58 5 0.08
ACGTcount: A:0.02, C:0.15, G:0.05, T:0.77
Consensus pattern (55 bp):
TTTTTTTTCTTTTTTTCTGTTTTTTTTCTTCTCTTTTTTCTCTTTGTTTCTCTTG
Found at i:8129874 original size:19 final size:19
Alignment explanation
Indices: 8129847--8129884 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8129837 TTTTTGGGAC
8129847 AGGAAAAGGAAGGTCTAAT
1 AGGAAAAGGAAGGTCTAAT
* *
8129866 AGGATAAGGAATGTCTAAT
1 AGGAAAAGGAAGGTCTAAT
8129885 CTTGTCATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.05, G:0.29, T:0.21
Consensus pattern (19 bp):
AGGAAAAGGAAGGTCTAAT
Found at i:8136000 original size:2 final size:2
Alignment explanation
Indices: 8135993--8136017 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8135983 TAGGGATCCC
8135993 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8136018 CTATTATAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8139202 original size:18 final size:17
Alignment explanation
Indices: 8139148--8139196 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 17
8139138 TTGGACCCTT
* *
8139148 AGTGCATCGGTGCACTAA
1 AGTGCATCGATGCA-TCA
8139166 GAGTGCATCGATGCATCA
1 -AGTGCATCGATGCATCA
8139184 AGTGCATTCGATG
1 AGTGCA-TCGATG
8139197 TTTCAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 6 0.22
18 8 0.30
19 13 0.48
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (17 bp):
AGTGCATCGATGCATCA
Found at i:8139301 original size:65 final size:65
Alignment explanation
Indices: 8139168--8139377 Score: 198
Period size: 65 Copynumber: 3.2 Consensus size: 65
8139158 TGCACTAAGA
* * *
8139168 GTGCATCGATGCATCAAGTGCATTCGATG-TTTCAAAATAGTCAGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGTCACAGTGCATCGATGCATGGATG
*
8139232 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAA-A-TCCTCAGTGCATCGATGCAT-GA
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCA-AAATAGT-CACAGTGCATCGATGCATGGA
*
8139294 TAT
64 T-G
* * * ** * **
8139297 GTGCATCGATACATGAAATGCATTCAATG--TTCAATTTAATTCATGGTGCATCGATGCATGGAT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAAT-AGTCACAGTGCATCGATGCATGGA-
8139360 TG
64 TG
* *
8139362 GTGCATTGGTGCATCA
1 GTGCATCGATGCATCA
8139378 CTTTGATAAA
Statistics
Matches: 119, Mismatches: 18, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
62 1 0.01
63 4 0.03
64 47 0.39
65 63 0.53
66 4 0.03
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTTCAAAATAGTCACAGTGCATCGATGCATGGATG
Found at i:8139830 original size:75 final size:74
Alignment explanation
Indices: 8139645--8139850 Score: 238
Period size: 74 Copynumber: 2.7 Consensus size: 74
8139635 CAAAGCCAAA
* * *
8139645 AATTCCAGATTGCTC-ATAGGGAACCGATTCCCCCCCATAGGAGGAATCGATTCCCCCCTGAATG
1 AATTCCAGA-TGCTCGA-AGGGAACCGA-TCCCCCCCATAGGAGGAACCGATT-CCCCCTAAATA
8139709 GTTTGGCTCCGAG
62 GTTTGGCTCCGAG
* * *
8139722 ATTTCCAGAATGCTCGGAGGGAACCGAT-TCCCCCATAGGAGGAACCGATTCCCCCTAAATAGTT
1 AATTCCAG-ATGCTCGAAGGGAACCGATCCCCCCCATAGGAGGAACCGATTCCCCCTAAATAGTT
* *
8139786 TTGTTCCGAG
65 TGGCTCCGAG
* * *
8139796 AATTCCAGTATGCTCGAAGGGAACCGATCCCCCCCA-AGGGGGTACCAATTCCCCC
1 AATTCCAG-ATGCTCGAAGGGAACCGATCCCCCCCATAGGAGGAACCGATTCCCCC
8139851 CTTGTACAAC
Statistics
Matches: 111, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
74 61 0.55
75 26 0.23
76 1 0.01
77 22 0.20
78 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.22
Consensus pattern (74 bp):
AATTCCAGATGCTCGAAGGGAACCGATCCCCCCCATAGGAGGAACCGATTCCCCCTAAATAGTTT
GGCTCCGAG
Found at i:8145668 original size:23 final size:21
Alignment explanation
Indices: 8145620--8145682 Score: 81
Period size: 21 Copynumber: 2.9 Consensus size: 21
8145610 TTTTGGTGCA
* *
8145620 GAGGGAATCGATCCCCCCCTT
1 GAGGGAACCGATTCCCCCCTT
*
8145641 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATTCCCCCCTT
8145662 GAAAGGGAACCGATTCCCCCC
1 G--AGGGAACCGATTCCCCCC
8145683 ACAGGGGAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 19 0.53
23 17 0.47
ACGTcount: A:0.22, C:0.37, G:0.24, T:0.17
Consensus pattern (21 bp):
GAGGGAACCGATTCCCCCCTT
Found at i:8148464 original size:74 final size:75
Alignment explanation
Indices: 8148282--8148489 Score: 260
Period size: 75 Copynumber: 2.8 Consensus size: 75
8148272 CAAAGCCAAA
** * **
8148282 AATTCCAGATTGCTCATAGGGAACCGATTCCCCCCCATAGGAGGAACCGATT-CCCCCTGAATGG
1 AATTCCAGA-TGCTCGGAGGGAACCGATT-CCCCCCATAGGAGGAACCGATTCCCCCCTAAACAG
8148346 TTTGGCTCCGAG
64 TTTGGCTCCGAG
*
8148358 ATTTCCAGAATGCTCGGAGGGAACCGATT-CCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
1 AATTCCAG-ATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGT
* *
8148422 TTTGTTCCGAG
65 TTGGCTCCGAG
* * *
8148433 AATTCCAGTATGCTCGGAGGGAACCGATCCCCCCCA-AGGGGGTACCGATTCCCCCCT
1 AATTCCAG-ATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCT
8148490 TGTACAACGG
Statistics
Matches: 116, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
74 21 0.18
75 64 0.55
76 30 0.26
77 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.21
Consensus pattern (75 bp):
AATTCCAGATGCTCGGAGGGAACCGATTCCCCCCATAGGAGGAACCGATTCCCCCCTAAACAGTT
TGGCTCCGAG
Found at i:8149549 original size:33 final size:33
Alignment explanation
Indices: 8149512--8149575 Score: 110
Period size: 33 Copynumber: 1.9 Consensus size: 33
8149502 ACTCTCACAG
8149512 TTTCTAAAGTTTACTAAATTAATGTGAACTATT
1 TTTCTAAAGTTTACTAAATTAATGTGAACTATT
* *
8149545 TTTCTAATGTTTACTAAATTAATGTGCACTA
1 TTTCTAAAGTTTACTAAATTAATGTGAACTA
8149576 AGTCTAAGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.45
Consensus pattern (33 bp):
TTTCTAAAGTTTACTAAATTAATGTGAACTATT
Found at i:8150048 original size:15 final size:15
Alignment explanation
Indices: 8150030--8150064 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8150020 AAGTCTATTG
8150030 CTATCTAATCTACTA
1 CTATCTAATCTACTA
**
8150045 CTATCTGGTCTACTA
1 CTATCTAATCTACTA
8150060 CTATC
1 CTATC
8150065 GGGTTTACTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.29, G:0.06, T:0.40
Consensus pattern (15 bp):
CTATCTAATCTACTA
Found at i:8150073 original size:15 final size:15
Alignment explanation
Indices: 8150038--8150073 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
8150028 TGCTATCTAA
*
8150038 TCTACTACTATCTGG
1 TCTACTACTATCGGG
8150053 TCTACTACTATCGGG
1 TCTACTACTATCGGG
*
8150068 TTTACT
1 TCTACT
8150074 GATATGTTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.19, C:0.25, G:0.14, T:0.42
Consensus pattern (15 bp):
TCTACTACTATCGGG
Found at i:8154801 original size:20 final size:21
Alignment explanation
Indices: 8154763--8154805 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
8154753 AAAGCATAAT
* *
8154763 ATTATATACTATAATAATATA
1 ATTATATACAATAAAAATATA
8154784 ATTATA-ACAATAAAAATATA
1 ATTATATACAATAAAAATATA
8154804 AT
1 AT
8154806 ATCATATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (21 bp):
ATTATATACAATAAAAATATA
Found at i:8156090 original size:25 final size:26
Alignment explanation
Indices: 8156062--8156114 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
8156052 AAATGTATTA
* * *
8156062 TTTTATT-ATTTTAAATTTATATAAT
1 TTTTATTAAATTTAAATTCATAAAAT
8156087 TTTTATTAAATTTAAATTCATAAAAT
1 TTTTATTAAATTTAAATTCATAAAAT
8156113 TT
1 TT
8156115 AATTTTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (26 bp):
TTTTATTAAATTTAAATTCATAAAAT
Found at i:8156171 original size:21 final size:20
Alignment explanation
Indices: 8156133--8156171 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
8156123 TTACAAAATT
*
8156133 TAAAAGATAAATGGATAAAC
1 TAAAAGATAAATAGATAAAC
*
8156153 TAAAAGAATAAATATATAA
1 TAAAAG-ATAAATAGATAA
8156172 CATATTATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.64, C:0.03, G:0.10, T:0.23
Consensus pattern (20 bp):
TAAAAGATAAATAGATAAAC
Found at i:8158976 original size:2 final size:2
Alignment explanation
Indices: 8158969--8159007 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
8158959 TAAATTCATA
*
8158969 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8159008 AAATTTAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:8162865 original size:12 final size:12
Alignment explanation
Indices: 8162803--8162857 Score: 60
Period size: 12 Copynumber: 4.8 Consensus size: 12
8162793 AGCTAACGTG
8162803 ATTTTTTA-ATT
1 ATTTTTTATATT
*
8162814 ATTTTTTAAATT
1 ATTTTTTATATT
* *
8162826 -TTTTATATAAT
1 ATTTTTTATATT
*
8162837 ATTATTTATATT
1 ATTTTTTATATT
8162849 ATTTTTTAT
1 ATTTTTTAT
8162858 TTAGTTTTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
11 16 0.46
12 19 0.54
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
ATTTTTTATATT
Found at i:8163258 original size:23 final size:24
Alignment explanation
Indices: 8163209--8163258 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
8163199 AAAAGTAATT
* * *
8163209 AAATTATTATTTATATATTTTTTA
1 AAATTAATATTAATATATTTTTAA
*
8163233 AAATTAATATTAATTTA-TTTTAA
1 AAATTAATATTAATATATTTTTAA
8163256 AAA
1 AAA
8163259 CTAAATGTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
AAATTAATATTAATATATTTTTAA
Found at i:8165555 original size:23 final size:23
Alignment explanation
Indices: 8165510--8165556 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
8165500 ATGACTATTA
*
8165510 ATGAAAAATAATTAAGTCTTTTC
1 ATGAAAAATAATTAAGTCATTTC
* **
8165533 ATGAAAAATAGTTATTTCATTTC
1 ATGAAAAATAATTAAGTCATTTC
8165556 A
1 A
8165557 CCCCAAAAGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.43, C:0.09, G:0.09, T:0.40
Consensus pattern (23 bp):
ATGAAAAATAATTAAGTCATTTC
Found at i:8166214 original size:22 final size:21
Alignment explanation
Indices: 8166177--8166241 Score: 60
Period size: 23 Copynumber: 3.0 Consensus size: 21
8166167 AGCTAACGTG
8166177 ATTTTTTTTAATTATTTTTAA
1 ATTTTTTTTAATTATTTTTAA
*
8166198 ATTTTTTATATAA-TATTTTTTAT
1 ATTTTTT-T-TAATTA-TTTTTAA
* *
8166221 ATTATTTTTTATTTAGTTTTA
1 ATT-TTTTTTAATTATTTTTA
8166242 TTCGACTAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 9
0.75 0.06 0.19
Matches are distributed among these distances:
21 7 0.19
22 10 0.28
23 15 0.42
24 4 0.11
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.71
Consensus pattern (21 bp):
ATTTTTTTTAATTATTTTTAA
Found at i:8166240 original size:12 final size:12
Alignment explanation
Indices: 8166180--8166232 Score: 58
Period size: 12 Copynumber: 4.7 Consensus size: 12
8166170 TAACGTGATT
8166180 TTTTTTA-ATTA
1 TTTTTTATATTA
*
8166191 -TTTTTAAATT-
1 TTTTTTATATTA
* *
8166201 TTTTATATAATA
1 TTTTTTATATTA
8166213 TTTTTTATATTA
1 TTTTTTATATTA
8166225 TTTTTTAT
1 TTTTTTAT
8166233 TTAGTTTTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
10 6 0.18
11 10 0.29
12 18 0.53
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTTTTATATTA
Done.