Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007984.1 Hibiscus syriacus cultivar Beakdansim tig00110429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12923621
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 44 of 65
Found at i:8922227 original size:56 final size:58
Alignment explanation
Indices: 8922117--8922230 Score: 214
Period size: 56 Copynumber: 2.0 Consensus size: 58
8922107 ATAACACCTT
8922117 TGAGTCATTATCCCATTTCCAAATATATATATATATATATATTAAAAGTATTTAATAA
1 TGAGTCATTATCCCATTTCCAAATATATATATATATATATATTAAAAGTATTTAATAA
8922175 TGAGTCATTATCCCATTTCC-AA-ATATATATATATATATATTAAAAGTATTTAATAA
1 TGAGTCATTATCCCATTTCCAAATATATATATATATATATATTAAAAGTATTTAATAA
8922231 GATATATAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
56 34 0.61
57 2 0.04
58 20 0.36
ACGTcount: A:0.43, C:0.11, G:0.05, T:0.41
Consensus pattern (58 bp):
TGAGTCATTATCCCATTTCCAAATATATATATATATATATATTAAAAGTATTTAATAA
Found at i:8923077 original size:20 final size:21
Alignment explanation
Indices: 8923040--8923087 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
8923030 ATTATTAATT
* * *
8923040 AATTAATTTCATTCAAAAGTA
1 AATTATTTTAATTCAAAACTA
8923061 AATTATTTTAATT-AAAACTA
1 AATTATTTTAATTCAAAACTA
*
8923081 AAATATT
1 AATTATT
8923088 AAAAAAATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (21 bp):
AATTATTTTAATTCAAAACTA
Found at i:8925132 original size:20 final size:20
Alignment explanation
Indices: 8925081--8925126 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
8925071 AATATCTTTC
* *
8925081 TCTTTTTTC-TCCTCTGTTT
1 TCTTTTTTCTTTCTTTGTTT
8925100 TCTTTTTTCTTTCTTTGTTT
1 TCTTTTTTCTTTCTTTGTTT
8925120 TCTTTTT
1 TCTTTTT
8925127 GTTTTCACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.00, C:0.20, G:0.04, T:0.76
Consensus pattern (20 bp):
TCTTTTTTCTTTCTTTGTTT
Found at i:8925624 original size:3 final size:3
Alignment explanation
Indices: 8925616--8925669 Score: 72
Period size: 3 Copynumber: 17.0 Consensus size: 3
8925606 CAAAATGTAA
*
8925616 AAT AAT AAT AAT AAT AAT AAT AGAT AAT AAT AAT ATT AGAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT A-AT -AAT AAT
8925664 AAT AAT
1 AAT AAT
8925670 TTATAAACTA
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
3 39 0.85
4 6 0.13
5 1 0.02
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8925644 original size:16 final size:16
Alignment explanation
Indices: 8925616--8925669 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
8925606 CAAAATGTAA
8925616 AATAATA-ATAATAAT
1 AATAATAGATAATAAT
8925631 AATAATAGATAATAAT
1 AATAATAGATAATAAT
*
8925647 AATATTAGATAAATAAT
1 AATAATAGAT-AATAAT
8925664 AATAAT
1 AATAAT
8925670 TTATAAACTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.20
16 17 0.49
17 11 0.31
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (16 bp):
AATAATAGATAATAAT
Found at i:8926349 original size:83 final size:82
Alignment explanation
Indices: 8926262--8926523 Score: 221
Period size: 83 Copynumber: 3.1 Consensus size: 82
8926252 GTGACAATCT
* *
8926262 CACTCTTTTCTCTAAAATATGTTGAGTCGTAGGACGATCTTACTCCTTTCCCTGAAGGAAGTTAA
1 CACTCCTTTC-CTAAAATATGTTGAGTCGTAGGATGATCTTACTCCTTTCCCTGAAGGAAGTTAA
* *
8926327 GTCATATTTTGGGCGATC
65 GTCATATTTTAGGTGATC
** ** * * * * * *
8926345 CACTCCTTTCCCTGTAGGATGTTGAATCGTGATTCGGGTGATC-TGCTCATTTGCCTGAAGGATG
1 CACTCCTTT-CCTAAAATATGTTGAGTCGT-A---GGATGATCTTACTCCTTTCCCTGAAGGAAG
**
8926409 TTGAA-TC-TGGTTTAGGTGATC
61 TT-AAGTCATATTTTAGGTGATC
*
8926430 CACTCTTTTCCTTGAAAGATAT-TT-AGTCGTAGGATGATCTTACTCCTTTCCCTGAA-GAACGT
1 CACTCCTTTCC-T-AAA-ATATGTTGAGTCGTAGGATGATCTTACTCCTTTCCCTGAAGGAA-GT
*
8926492 TAAGTCATATTTCAGGTGATC
62 TAAGTCATATTTTAGGTGATC
8926513 CACTCCTTTCC
1 CACTCCTTTCC
8926524 CTGAAGGATG
Statistics
Matches: 135, Mismatches: 31, Indels: 26
0.70 0.16 0.14
Matches are distributed among these distances:
81 11 0.08
82 18 0.13
83 43 0.32
84 5 0.04
85 24 0.18
86 24 0.18
87 10 0.07
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (82 bp):
CACTCCTTTCCTAAAATATGTTGAGTCGTAGGATGATCTTACTCCTTTCCCTGAAGGAAGTTAAG
TCATATTTTAGGTGATC
Found at i:8926497 original size:168 final size:167
Alignment explanation
Indices: 8926175--8926611 Score: 555
Period size: 168 Copynumber: 2.6 Consensus size: 167
8926165 TATTTCGAGT
* * * * *
8926175 GATCCACTCTTTTCCCTGAAAGATGATGAATCGTGATTCGGGTGATCT-ATTACTTTCCCTGAAG
1 GATCCACTCCTTTCCCTGAAGGATGTTGAATCGTGATTCGGGTGATCTGCTCA-TTTCCCTGAAG
* ***
8926239 GATGCTGAATTTGG--TGACAATCTCACTCTTTTCTCTAAAATATGTTGAGTCGTAGGACGATCT
65 GATGCTGAATCTGGTTTGGTGATC-CACTCTTTTCTCTAAAATATGTTGAGTCGTAGGACGATCT
**
8926302 TACTCCTTTCCCTGAAGGAAGTTAAGTCATATTTTGGGC
129 TACTCCTTTCCCTGAAGGAAGTTAAGTCATATTTCAGGC
* *
8926341 GATCCACTCCTTTCCCTGTAGGATGTTGAATCGTGATTCGGGTGATCTGCTCATTTGCCTGAAGG
1 GATCCACTCCTTTCCCTGAAGGATGTTGAATCGTGATTCGGGTGATCTGCTCATTTCCCTGAAGG
* *
8926406 ATGTTGAATCTGGTTTAGGTGATCCACTCTTTTC-CTTGAAAGATAT-TT-AGTCGTAGGATGAT
66 ATGCTGAATCTGGTTT-GGTGATCCACTCTTTTCTC-T-AAA-ATATGTTGAGTCGTAGGACGAT
*
8926468 CTTACTCCTTTCCCTGAA-GAACGTTAAGTCATATTTCAGGT
127 CTTACTCCTTTCCCTGAAGGAA-GTTAAGTCATATTTCAGGC
* *
8926509 GATCCACTCCTTTCCCTGAAGGATGTTGAATCATGATTCGGGTAATCTGCTCATTTCCCTGAAGG
1 GATCCACTCCTTTCCCTGAAGGATGTTGAATCGTGATTCGGGTGATCTGCTCATTTCCCTGAAGG
* * *
8926574 ATGCTAAATCTGGTTCGGGTGATCCACTCATTCTCTCT
66 ATGCTGAATCTGGTT-TGGTGATCCACTC-TTTTCTCT
8926612 GAGAAAACCA
Statistics
Matches: 236, Mismatches: 24, Indels: 19
0.85 0.09 0.07
Matches are distributed among these distances:
166 66 0.28
167 6 0.03
168 145 0.61
169 14 0.06
170 5 0.02
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (167 bp):
GATCCACTCCTTTCCCTGAAGGATGTTGAATCGTGATTCGGGTGATCTGCTCATTTCCCTGAAGG
ATGCTGAATCTGGTTTGGTGATCCACTCTTTTCTCTAAAATATGTTGAGTCGTAGGACGATCTTA
CTCCTTTCCCTGAAGGAAGTTAAGTCATATTTCAGGC
Found at i:8926566 original size:43 final size:42
Alignment explanation
Indices: 8926297--8926605 Score: 182
Period size: 43 Copynumber: 7.3 Consensus size: 42
8926287 GTCGTAGGAC
* * * *
8926297 GATCTTACTCCTTTCCCTGAAGGAAGTT-AAGTCAT-ATTTTGGGC
1 GATC-TACTCATTTCCCTGAAGGATGTTGAA-TC-TGA-TTCGGGT
* * *
8926341 GATCCACTCCTTTCCCTGTAGGATGTTGAATCGTGATTCGGGT
1 GATCTACTCATTTCCCTGAAGGATGTTGAATC-TGATTCGGGT
* * * **
8926384 GATCTGCTCATTTGCCTGAAGGATGTTGAATCTGGTTTAGGT
1 GATCTACTCATTTCCCTGAAGGATGTTGAATCTGATTCGGGT
* * * * * * * * *
8926426 GATCCACTCTTTTCCTTGAAAGATATTTAGTC-G--TAGGAT
1 GATCTACTCATTTCCCTGAAGGATGTTGAATCTGATTCGGGT
* * * *
8926465 GATCTTACTCCTTTCCCTGAAGAACGTT-AAGTCAT-ATTTCAGGT
1 GATC-TACTCATTTCCCTGAAGGATGTTGAA-TC-TGA-TTCGGGT
* *
8926509 GATCCACTCCTTTCCCTGAAGGATGTTGAATCATGATTCGGGT
1 GATCTACTCATTTCCCTGAAGGATGTTGAATC-TGATTCGGGT
* * * * *
8926552 AATCTGCTCATTTCCCTGAAGGATGCTAAATCTGGTTCGGGT
1 GATCTACTCATTTCCCTGAAGGATGTTGAATCTGATTCGGGT
*
8926594 GATCCACTCATT
1 GATCTACTCATT
8926606 CTCTCTGAGA
Statistics
Matches: 203, Mismatches: 51, Indels: 24
0.73 0.18 0.09
Matches are distributed among these distances:
39 8 0.04
40 18 0.09
41 1 0.00
42 48 0.24
43 111 0.55
44 17 0.08
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (42 bp):
GATCTACTCATTTCCCTGAAGGATGTTGAATCTGATTCGGGT
Found at i:8928926 original size:3 final size:3
Alignment explanation
Indices: 8928913--8929013 Score: 91
Period size: 3 Copynumber: 33.0 Consensus size: 3
8928903 TTTTTATTTA
* * * * *
8928913 TAT TTT TAT TAT TAGT T-T TATT TAT TAT AAA TAT TAT TAT AAA TAT
1 TAT TAT TAT TAT TA-T TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
8928959 T-T TAT T-T TATT TATT TAT TATT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TA-T TA-T TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
8929005 TAT TAT TAT
1 TAT TAT TAT
8929014 AAATTTATAT
Statistics
Matches: 81, Mismatches: 10, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
2 6 0.07
3 60 0.74
4 15 0.19
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:8930687 original size:14 final size:15
Alignment explanation
Indices: 8930659--8930690 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
8930649 TTTTGAGAAA
8930659 ATTTATTATATTAAT
1 ATTTATTATATTAAT
8930674 ATTTATTA-ATTAAT
1 ATTTATTATATTAAT
8930688 ATT
1 ATT
8930691 AAAGAAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTTATTATATTAAT
Found at i:8931766 original size:5 final size:5
Alignment explanation
Indices: 8931756--8931784 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
8931746 AAGCTCTAGC
8931756 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
8931785 CTTCTAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:8936025 original size:15 final size:14
Alignment explanation
Indices: 8936005--8936036 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
8935995 CATTCATCAG
8936005 AAAAAAAGAAAAAGA
1 AAAAAAAGAAAAA-A
8936020 AAAAAAAGAAAAAA
1 AAAAAAAGAAAAAA
8936034 AAA
1 AAA
8936037 GGGAAAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAAAAA
Found at i:8938515 original size:75 final size:75
Alignment explanation
Indices: 8938392--8938643 Score: 369
Period size: 75 Copynumber: 3.4 Consensus size: 75
8938382 ACAAAAAAGA
* * * * * *
8938392 AAATGTTGGGGTATGCTGAAAACCCATTTCAATCATAATCAAGAATATTGACGCATTTTGAACGT
1 AAATGTTAGGGCATGCTGAAAGCCCATTTCAATCAAAATGAGGAATATTGACGCATTTTGAACGT
8938457 TTGTATCAGC
66 TTGTATCAGC
* *
8938467 AAATGTTAGGGCATGCTGAAAGCCTATTTCAATCAAAATGAGGAATATTGACACATTTTGAACGT
1 AAATGTTAGGGCATGCTGAAAGCCCATTTCAATCAAAATGAGGAATATTGACGCATTTTGAACGT
8938532 TTGTATCAGC
66 TTGTATCAGC
* * * * *
8938542 AAATGTTGGGGCATGTTGAAAGCCCATTTCAATCAGAATGAGGAATGTTGGCGCATTTTGAACGT
1 AAATGTTAGGGCATGCTGAAAGCCCATTTCAATCAAAATGAGGAATATTGACGCATTTTGAACGT
*
8938607 TTGTATTAGC
66 TTGTATCAGC
*
8938617 AAATGTTAGGGCATGCTGAAGGCCCAT
1 AAATGTTAGGGCATGCTGAAAGCCCAT
8938644 ATCATCTTAT
Statistics
Matches: 158, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 158 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.31
Consensus pattern (75 bp):
AAATGTTAGGGCATGCTGAAAGCCCATTTCAATCAAAATGAGGAATATTGACGCATTTTGAACGT
TTGTATCAGC
Found at i:8939871 original size:22 final size:22
Alignment explanation
Indices: 8939843--8939938 Score: 140
Period size: 22 Copynumber: 4.4 Consensus size: 22
8939833 CATCTACATT
8939843 CTTCAAAGATGATAGATTCTCA
1 CTTCAAAGATGATAGATTCTCA
*
8939865 CTTCAAAGATGATAGATTCTCT
1 CTTCAAAGATGATAGATTCTCA
8939887 CTTCAAAGATGATAGATTCTCTA
1 CTTCAAAGATGATAGATTCTC-A
* *
8939910 -TTTAAAGATGATAGATTCTCT
1 CTTCAAAGATGATAGATTCTCA
*
8939931 TTTCAAAG
1 CTTCAAAG
8939939 TTGAAAAACT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
22 67 1.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (22 bp):
CTTCAAAGATGATAGATTCTCA
Found at i:8939899 original size:44 final size:44
Alignment explanation
Indices: 8939842--8939938 Score: 160
Period size: 44 Copynumber: 2.2 Consensus size: 44
8939832 ACATCTACAT
8939842 TCTTCAAAGATGATAGATTCTC-ACTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTCTA-TTCAAAGATGATAGATTCTC
*
8939886 TCTTCAAAGATGATAGATTCTCTATTTAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTCTATTCAAAGATGATAGATTCTC
*
8939930 TTTTCAAAG
1 TCTTCAAAG
8939939 TTGAAAAACT
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
44 49 0.98
45 1 0.02
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.37
Consensus pattern (44 bp):
TCTTCAAAGATGATAGATTCTCTATTCAAAGATGATAGATTCTC
Found at i:8940539 original size:20 final size:20
Alignment explanation
Indices: 8940479--8940540 Score: 51
Period size: 20 Copynumber: 3.1 Consensus size: 20
8940469 CAGAGAAAGC
*
8940479 TCATAATGAGAAGAACTT-A
1 TCATAATGAGAAGAACTTGT
*
8940498 TC-TGAA-GATGAAGAA-TAAGT
1 TCAT-AATGA-GAAGAACT-TGT
8940518 TCATAATGAGAAGAACTTGT
1 TCATAATGAGAAGAACTTGT
8940538 TCA
1 TCA
8940541 ACCTTTTGCT
Statistics
Matches: 33, Mismatches: 3, Indels: 13
0.67 0.06 0.27
Matches are distributed among these distances:
18 4 0.12
19 10 0.30
20 15 0.45
21 4 0.12
ACGTcount: A:0.44, C:0.10, G:0.19, T:0.27
Consensus pattern (20 bp):
TCATAATGAGAAGAACTTGT
Found at i:8940661 original size:123 final size:123
Alignment explanation
Indices: 8940359--8941880 Score: 2416
Period size: 123 Copynumber: 12.6 Consensus size: 123
8940349 AACAAGAAGG
*
8940359 AGTTCATAATGAGAATAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
*
8940424 ACCTTTTGCTAGACTCTATAACAGAAGGAGATAGATCAG----CA--TTTCCAGAGAA
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAGCATACACTTTTCCAGAGAA
* * *
8940476 AGCTCATAATGAGAAGAACTTATCTGAAGATGAAGAATAAGTTCATAATGAGAAGAACTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
* *
8940541 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAACATAAACTTTTCCAGAGAA
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAGCATACACTTTTCCAGAGAA
* *
8940599 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTTA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
*
8940664 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAAATCAG----CA--TTTCCAGAGAA
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAGCATACACTTTTCCAGAGAA
* *
8940716 AGTTCATAATGAGAAGAACTTATCTAAAGAGGAAGTAGAAGTTCATAATGAGAAGAACTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
* *
8940781 ACCTTTTGCTAGACTCTATCACAGAAGAAGATAGATCATCATACACTTTTCCAGAGAA
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAGCATACACTTTTCCAGAGAA
* *
8940839 AGTTCATAATGAGAATAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
*
8940904 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCATCATACACTTTTCCAGAGAA
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAGCATACACTTTTCCAGAGAA
*
8940962 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATTAGAAGAACTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
*
8941027 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGGT---CA-ACA--TTTCCAGAGAA
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAGCATACACTTTTCCAGAGAA
8941079 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAA-AACCTTGTTC
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAA-CTTGTTC
* * *
8941143 AACCTTTTGCTAGACTCTATCACAAAAGGAGATAGATCAGCATACAGTTTTCCAGAAAA
65 AACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAGCATACACTTTTCCAGAGAA
* *
8941202 AGTTCATAATGAGAATAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACCTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
* *
8941267 ACCTTTTGCTAGACTCTATCACAGAAGGAGATATATCAGCATACACTTTTTCAGAGAA
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAGCATACACTTTTCCAGAGAA
* *
8941325 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAATTTCATAATGAGAAGAATTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
* *
8941390 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAACATTCACTTTTCCAGAGAA
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAGCATACACTTTTCCAGAGAA
8941448 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
*
8941513 ACCTCTTGCTAGACTCTATCACAGAAGGAGATAGATCAG----CA--TTTCCAGAGAA
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAGCATACACTTTTCCAGAGAA
8941565 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
* * * *
8941630 ACCTTTTAC-ATGATTCTATCACAAAAGGAGATAGATCATCATACACTTTTCCAGAGAA
66 ACCTTTTGCTA-GACTCTATCACAGAAGGAGATAGATCAGCATACACTTTTCCAGAGAA
*
8941688 AGTTCATAATGAGAAGAACTTATCTAAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
* * * *
8941753 ACCTTTTAC-ATGATTCTATCACAGAAGGAGATAGATCAGCAT-CAACATTTCCAGATAA
66 ACCTTTTGCTA-GACTCTATCACAGAAGGAGATAGATCAGCATAC-ACTTTTCCAGAGAA
* * * *
8941811 AGTTCATAATGAGAAAAACTTATTTGAAGAGGAAGAAGAAGTTCAGAATGAGAAGAACTTGTTCG
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
8941876 ACCTT
66 ACCTT
8941881 AGTTTGATTC
Statistics
Matches: 1308, Mismatches: 69, Indels: 50
0.92 0.05 0.04
Matches are distributed among these distances:
116 3 0.00
117 420 0.32
119 6 0.00
120 4 0.00
121 8 0.01
122 1 0.00
123 864 0.66
124 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (123 bp):
AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAGCATACACTTTTCCAGAGAA
Found at i:8940779 original size:20 final size:20
Alignment explanation
Indices: 8940717--8940780 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
8940707 TCCAGAGAAA
8940717 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
* * * ***
8940737 -ATC-TAAAGAGGAAGTAGAA
1 GTTCATAATGA-GAAGAACTT
8940756 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
8940776 GTTCA
1 GTTCA
8940781 ACCTTTTGCT
Statistics
Matches: 29, Mismatches: 12, Indels: 6
0.62 0.26 0.13
Matches are distributed among these distances:
18 5 0.17
19 7 0.24
20 12 0.41
21 5 0.17
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (20 bp):
GTTCATAATGAGAAGAACTT
Found at i:8940782 original size:240 final size:243
Alignment explanation
Indices: 8940359--8941880 Score: 2366
Period size: 240 Copynumber: 6.3 Consensus size: 243
8940349 AACAAGAAGG
*
8940359 AGTTCATAATGAGAATAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
* *
8940424 ACCTTTTGCTAGACTCTATAACAGAAGGAGATAG--ATCA-GCA-TTTCCAGAGAAAGCTCATAA
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGACATCATGCATTTTCCAGAGAAAGTTCATAA
* *
8940485 TGAGAAGAACTTATCTGAAGATGAAGAATAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
131 TGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
*
8940550 TAGACTCTATCACAGAAGGAGATAGATCAACATAAACTTTTCCAGAGAA
196 TAGACTCTATCACAGAAGGAGATAGATCAGCAT-AACTTTTCCAGAGAA
* *
8940599 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTTA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
8940664 ACCTTTTGCTAGACTCTATCACAGAAGGAGATA-A-ATCA-GCA-TTTCCAGAGAAAGTTCATAA
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGACATCATGCATTTTCCAGAGAAAGTTCATAA
* *
8940725 TGAGAAGAACTTATCTAAAGAGGAAGTAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
131 TGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
* *
8940790 TAGACTCTATCACAGAAGAAGATAGATCATCATACACTTTTCCAGAGAA
196 TAGACTCTATCACAGAAGGAGATAGATCAGCATA-ACTTTTCCAGAGAA
* *
8940839 AGTTCATAATGAGAATAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
*
8940904 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCATCATACACTTTTCCAGAGAAAGTTCAT
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGA-CATCATGCA-TTTTCCAGAGAAAGTTCAT
*
8940969 AATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATTAGAAGAACTTGTTCAACCTTTT
129 AATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTT
* *
8941034 GCTAGACTCTATCACAGAAGGAGATAGGT---C--AACATTTCCAGAGAA
194 GCTAGACTCTATCACAGAAGGAGATAGATCAGCATAACTTTTCCAGAGAA
8941079 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAA-AACCTTGTTC
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAA-CTTGTTC
* * * *
8941143 AACCTTTTGCTAGACTCTATCACAAAAGGAGATAGATCAGCATACAGTTTTCCAGAAAAAGTTCA
65 AACCTTTTGCTAGACTCTATCACAGAAGGAGATAGA-CATCATGCA-TTTTCCAGAGAAAGTTCA
* *
8941208 TAATGAGAATAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACCTGTTCAACCTTT
128 TAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTT
* *
8941273 TGCTAGACTCTATCACAGAAGGAGATATATCAGCATACACTTTTTCAGAGAA
193 TGCTAGACTCTATCACAGAAGGAGATAGATCAGCATA-ACTTTTCCAGAGAA
* *
8941325 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAATTTCATAATGAGAAGAATTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
* *
8941390 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAACATTCACTTTTCCAGAGAAAGTTCAT
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGA-CATCATGCA-TTTTCCAGAGAAAGTTCAT
*
8941455 AATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTCTT
129 AATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTT
8941520 GCTAGACTCTATCACAGAAGGAGATAGATCAGC---A--TTTCCAGAGAA
194 GCTAGACTCTATCACAGAAGGAGATAGATCAGCATAACTTTTCCAGAGAA
8941565 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
* * * *
8941630 ACCTTTTAC-ATGATTCTATCACAAAAGGAGATAGATCATCATACACTTTTCCAGAGAAAGTTCA
66 ACCTTTTGCTA-GACTCTATCACAGAAGGAGATAGA-CATCATGCA-TTTTCCAGAGAAAGTTCA
*
8941694 TAATGAGAAGAACTTATCTAAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTT
128 TAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTT
* * * *
8941759 TAC-ATGATTCTATCACAGAAGGAGATAGATCAGCATCAACATTTCCAGATAA
193 TGCTA-GACTCTATCACAGAAGGAGATAGATCAGCAT-AACTTTTCCAGAGAA
* * * *
8941811 AGTTCATAATGAGAAAAACTTATTTGAAGAGGAAGAAGAAGTTCAGAATGAGAAGAACTTGTTCG
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
8941876 ACCTT
66 ACCTT
8941881 AGTTTGATTC
Statistics
Matches: 1197, Mismatches: 61, Indels: 42
0.92 0.05 0.03
Matches are distributed among these distances:
239 5 0.00
240 768 0.64
241 2 0.00
242 1 0.00
243 6 0.01
244 3 0.00
245 1 0.00
246 409 0.34
247 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (243 bp):
AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGACATCATGCATTTTCCAGAGAAAGTTCATAA
TGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGC
TAGACTCTATCACAGAAGGAGATAGATCAGCATAACTTTTCCAGAGAA
Found at i:8941018 original size:363 final size:359
Alignment explanation
Indices: 8940359--8941880 Score: 2394
Period size: 363 Copynumber: 4.2 Consensus size: 359
8940349 AACAAGAAGG
*
8940359 AGTTCATAATGAGAATAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
* * *
8940424 ACCTTTTGCTAGACTCTATAACAGAAGGAGATAGATCAGCATTTCCAGAGAAAGCTCATAATGAG
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAACATTTCCAGAGAAAGTTCATAATGAG
* *
8940489 AAGAACTTATCTGAAGATGAAGAATAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTAGA
131 AAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTAGA
* *
8940554 CTCTATCACAGAAGGAGATAGATCAACATAAACTTTTCCAGAGAAAGTTCATAATGAGAAGAACT
196 CTCTATCACAGAAGGAGATAGATCATCATACACTTTTCCAGAGAAAGTTCATAATGAGAAGAACT
* *
8940619 TATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTTAACCTTTTGCTAGACTCTATC
261 TATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTAGACTCTATC
*
8940684 ACAGAAGGAGATA-A-ATCAGCATTTCCAGAGAA
326 ACAGAAGGAGATACACATCAACATTTCCAGAGAA
* *
8940716 AGTTCATAATGAGAAGAACTTATCTAAAGAGGAAGTAGAAGTTCATAATGAGAAGAACTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
*
8940781 ACCTTTTGCTAGACTCTATCACAGAAGAAGATAGATCATCATACACTTTTCCAGAGAAAGTTCAT
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAG---ATCA-ACA--TTTCCAGAGAAAGTTCAT
* *
8940846 AATGAGAATAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTT
125 AATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTT
8940911 GCTAGACTCTATCACAGAAGGAGATAGATCATCATACACTTTTCCAGAGAAAGTTCATAATGAGA
190 GCTAGACTCTATCACAGAAGGAGATAGATCATCATACACTTTTCCAGAGAAAGTTCATAATGAGA
*
8940976 AGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATTAGAAGAACTTGTTCAACCTTTTGCTAGAC
255 AGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTAGAC
**
8941041 TCTATCACAGAAGGAGAT--AGGTCAACATTTCCAGAGAA
320 TCTATCACAGAAGGAGATACACATCAACATTTCCAGAGAA
8941079 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAA-AACCTTGTTC
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAA-CTTGTTC
* *
8941143 AACCTTTTGCTAGACTCTATCACAAAAGGAGATAGATCAGCATACAGTTTTCCAGAAAAAGTTCA
65 AACCTTTTGCTAGACTCTATCACAGAAGGAGATAGAT---CA-ACA--TTTCCAGAGAAAGTTCA
* *
8941208 TAATGAGAATAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACCTGTTCAACCTTT
124 TAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTT
* * *
8941273 TGCTAGACTCTATCACAGAAGGAGATATATCAGCATACACTTTTTCAGAGAAAGTTCATAATGAG
189 TGCTAGACTCTATCACAGAAGGAGATAGATCATCATACACTTTTCCAGAGAAAGTTCATAATGAG
* *
8941338 AAGAACTTATCTGAAGAGGAAGAAGAATTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTAGA
254 AAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTAGA
*
8941403 CTCTATCACAGAAGGAGATAGATCAACATTC-ACTTTTCCAGAGAA
319 CTCTATCACAGAAGGAGAT--A-C-ACA-TCAACATTTCCAGAGAA
8941448 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
* *
8941513 ACCTCTTGCTAGACTCTATCACAGAAGGAGATAGATCAGCATTTCCAGAGAAAGTTCATAATGAG
66 ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAACATTTCCAGAGAAAGTTCATAATGAG
*
8941578 AAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTAC-ATG
131 AAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTA-G
* *
8941642 ATTCTATCACAAAAGGAGATAGATCATCATACACTTTTCCAGAGAAAGTTCATAATGAGAAGAAC
195 ACTCTATCACAGAAGGAGATAGATCATCATACACTTTTCCAGAGAAAGTTCATAATGAGAAGAAC
* * *
8941707 TTATCTAAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTAC-ATGATTCTA
260 TTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTA-GACTCTA
*
8941771 TCACAGAAGGAGATAGATCAGCATCAACATTTCCAGATAA
324 TCACAGAAGGAGAT--A-CA-CATCAACATTTCCAGAGAA
* * * *
8941811 AGTTCATAATGAGAAAAACTTATTTGAAGAGGAAGAAGAAGTTCAGAATGAGAAGAACTTGTTCG
1 AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
8941876 ACCTT
66 ACCTT
8941881 AGTTTGATTC
Statistics
Matches: 1083, Mismatches: 59, Indels: 40
0.92 0.05 0.03
Matches are distributed among these distances:
357 94 0.09
360 6 0.01
361 2 0.00
362 8 0.01
363 855 0.79
365 2 0.00
366 2 0.00
369 110 0.10
370 4 0.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (359 bp):
AGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCA
ACCTTTTGCTAGACTCTATCACAGAAGGAGATAGATCAACATTTCCAGAGAAAGTTCATAATGAG
AAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTAGA
CTCTATCACAGAAGGAGATAGATCATCATACACTTTTCCAGAGAAAGTTCATAATGAGAAGAACT
TATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTAGACTCTATC
ACAGAAGGAGATACACATCAACATTTCCAGAGAA
Found at i:8941511 original size:20 final size:20
Alignment explanation
Indices: 8941449--8941512 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
8941439 TCCAGAGAAA
8941449 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
* ***
8941469 -ATC-TGAA-GAGGAAGAAGAA
1 GTTCAT-AATGA-GAAGAACTT
8941488 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
8941508 GTTCA
1 GTTCA
8941513 ACCTCTTGCT
Statistics
Matches: 31, Mismatches: 8, Indels: 10
0.63 0.16 0.20
Matches are distributed among these distances:
18 3 0.10
19 10 0.32
20 15 0.48
21 3 0.10
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.25
Consensus pattern (20 bp):
GTTCATAATGAGAAGAACTT
Found at i:8941628 original size:20 final size:20
Alignment explanation
Indices: 8941566--8941629 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
8941556 TCCAGAGAAA
8941566 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
* ***
8941586 -ATC-TGAA-GAGGAAGAAGAA
1 GTTCAT-AATGA-GAAGAACTT
8941605 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
8941625 GTTCA
1 GTTCA
8941630 ACCTTTTACA
Statistics
Matches: 31, Mismatches: 8, Indels: 10
0.63 0.16 0.20
Matches are distributed among these distances:
18 3 0.10
19 10 0.32
20 15 0.48
21 3 0.10
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.25
Consensus pattern (20 bp):
GTTCATAATGAGAAGAACTT
Found at i:8941751 original size:20 final size:20
Alignment explanation
Indices: 8941689--8941752 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
8941679 TCCAGAGAAA
8941689 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
* * ***
8941709 -ATC-TAAAGAGGAAGAAGAA
1 GTTCATAATGA-GAAGAACTT
8941728 GTTCATAATGAGAAGAACTT
1 GTTCATAATGAGAAGAACTT
8941748 GTTCA
1 GTTCA
8941753 ACCTTTTACA
Statistics
Matches: 31, Mismatches: 10, Indels: 6
0.66 0.21 0.13
Matches are distributed among these distances:
18 5 0.16
19 8 0.26
20 13 0.42
21 5 0.16
ACGTcount: A:0.44, C:0.09, G:0.22, T:0.25
Consensus pattern (20 bp):
GTTCATAATGAGAAGAACTT
Found at i:8942413 original size:3 final size:3
Alignment explanation
Indices: 8942380--8942454 Score: 70
Period size: 3 Copynumber: 26.0 Consensus size: 3
8942370 TTTATATTTA
* * *
8942380 TAT TAT TAGT T-T TAT TCAT TAT AAA TAT TAT TAT AAT TAT T-T TAT
1 TAT TAT TA-T TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8942425 T-T TAT T-T TAT TAT T-T TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8942455 AAATTTATAT
Statistics
Matches: 59, Mismatches: 6, Indels: 14
0.75 0.08 0.18
Matches are distributed among these distances:
2 10 0.17
3 44 0.75
4 5 0.08
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:8943123 original size:3 final size:3
Alignment explanation
Indices: 8943090--8943164 Score: 70
Period size: 3 Copynumber: 26.0 Consensus size: 3
8943080 TTTATATTTA
* * *
8943090 TAT TAT TAGT T-T TAT TCAT TAT AAA TAT TAT TAT AAT TAT T-T TAT
1 TAT TAT TA-T TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8943135 T-T TAT T-T TAT TAT T-T TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8943165 AAATTTATAT
Statistics
Matches: 59, Mismatches: 6, Indels: 14
0.75 0.08 0.18
Matches are distributed among these distances:
2 10 0.17
3 44 0.75
4 5 0.08
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:8943228 original size:710 final size:710
Alignment explanation
Indices: 8941869--8943289 Score: 2824
Period size: 710 Copynumber: 2.0 Consensus size: 710
8941859 TGAGAAGAAC
8941869 TTGTTCGACCTTAGTTTGATTCATCACCTATGGAGTTGAATGAAAGAAGAACCTCTCTTGAGGAT
1 TTGTTCGACCTTAGTTTGATTCATCACCTATGGAGTTGAATGAAAGAAGAACCTCTCTTGAGGAT
8941934 CAACAGTTTCAGAAGAAGTTCATAAGAAGAAGAGCTCGTCTGAAGAAGGAGAATAAGTTCATAAT
66 CAACAGTTTCAGAAGAAGTTCATAAGAAGAAGAGCTCGTCTGAAGAAGGAGAATAAGTTCATAAT
8941999 GAGAAGAATTTGTTCAAGCTTGCCTTAATTCATCACATATGAAGCCGAACTAACAACCCCTCTTT
131 GAGAAGAATTTGTTCAAGCTTGCCTTAATTCATCACATATGAAGCCGAACTAACAACCCCTCTTT
8942064 CAAGGATCAGCATTTCCAGAAGGAGTTCATAATGAGAATGACTCATCTGACGAGGAATAAAAAGT
196 CAAGGATCAGCATTTCCAGAAGGAGTTCATAATGAGAATGACTCATCTGACGAGGAATAAAAAGT
8942129 TCATAATAAGAAGAACTTGTTCAACTTTTTGCTAGATTACATCACAGGAAGAGATGAATTGTCAT
261 TCATAATAAGAAGAACTTGTTCAACTTTTTGCTAGATTACATCACAGGAAGAGATGAATTGTCAT
*
8942194 CCCCAATAAAAGAGTTCATAATGAGAAGAACTTGTTCAACATTTCCATCCCAATCAAGTGAAGTC
326 CCCCAATAAAAGAGTTCATAATGAGAAGAACTTGTTCAACATTGCCATCCCAATCAAGTGAAGTC
8942259 AAATGGATAAAAAAAACTTATTATCTTATTGTCTTTGCCCTATTCTTGTTAACAAAAGAATGAGC
391 AAATGGATAAAAAAAACTTATTATCTTATTGTCTTTGCCCTATTCTTGTTAACAAAAGAATGAGC
8942324 AAAGAGGGCAGCTGAAGATACTAGTTTTTTCATCCATTTGTTTTTATTTATATTTATATTATTAG
456 AAAGAGGGCAGCTGAAGATACTAGTTTTTTCATCCATTTGTTTTTATTTATATTTATATTATTAG
8942389 TTTTATTCATTATAAATATTATTATAATTATTTTATTTTATTTTATTATTTTATTATTATTATTA
521 TTTTATTCATTATAAATATTATTATAATTATTTTATTTTATTTTATTATTTTATTATTATTATTA
8942454 TAAATTTATATTAAAGGCCCAAAATATAAACCCGACCAAATTTACAAGCCCAACCCGGTCTAGGC
586 TAAATTTATATTAAAGGCCCAAAATATAAACCCGACCAAATTTACAAGCCCAACCCGGTCTAGGC
8942519 CCAAAACTAACCCTAAACCCAATTAGGGTTTGTATAATTTCTAGCAGCCGCTAACTCCTT
651 CCAAAACTAACCCTAAACCCAATTAGGGTTTGTATAATTTCTAGCAGCCGCTAACTCCTT
8942579 TTGTTCGACCTTAGTTTGATTCATCACCTATGGAGTTGAATGAAAGAAGAACCTCTCTTGAGGAT
1 TTGTTCGACCTTAGTTTGATTCATCACCTATGGAGTTGAATGAAAGAAGAACCTCTCTTGAGGAT
8942644 CAACAGTTTCAGAAGAAGTTCATAAGAAGAAGAGCTCGTCTGAAGAAGGAGAATAAGTTCATAAT
66 CAACAGTTTCAGAAGAAGTTCATAAGAAGAAGAGCTCGTCTGAAGAAGGAGAATAAGTTCATAAT
8942709 GAGAAGAATTTGTTCAAGCTTGCCTTAATTCATCACATATGAAGCCGAACTAACAACCCCTCTTT
131 GAGAAGAATTTGTTCAAGCTTGCCTTAATTCATCACATATGAAGCCGAACTAACAACCCCTCTTT
8942774 CAAGGATCAGCATTTCCAGAAGGAGTTCATAATGAGAATGACTCATCTGACGAGGAATAAAAAGT
196 CAAGGATCAGCATTTCCAGAAGGAGTTCATAATGAGAATGACTCATCTGACGAGGAATAAAAAGT
8942839 TCATAATAAGAAGAACTTGTTCAACTTTTTGCTAGATTACATCACAGGAAGAGATGAATTGTCAT
261 TCATAATAAGAAGAACTTGTTCAACTTTTTGCTAGATTACATCACAGGAAGAGATGAATTGTCAT
8942904 CCCCAATAAAAGAGTTCATAATGAGAAGAACTTGTTCAACATTGCCATCCCAATCAAGTGAAGTC
326 CCCCAATAAAAGAGTTCATAATGAGAAGAACTTGTTCAACATTGCCATCCCAATCAAGTGAAGTC
8942969 AAATGGATAAAAAAAACTTATTATCTTATTGTCTTTGCCCTATTCTTGTTAACAAAAGAATGAGC
391 AAATGGATAAAAAAAACTTATTATCTTATTGTCTTTGCCCTATTCTTGTTAACAAAAGAATGAGC
8943034 AAAGAGGGCAGCTGAAGATACTAGTTTTTTCATCCATTTGTTTTTATTTATATTTATATTATTAG
456 AAAGAGGGCAGCTGAAGATACTAGTTTTTTCATCCATTTGTTTTTATTTATATTTATATTATTAG
8943099 TTTTATTCATTATAAATATTATTATAATTATTTTATTTTATTTTATTATTTTATTATTATTATTA
521 TTTTATTCATTATAAATATTATTATAATTATTTTATTTTATTTTATTATTTTATTATTATTATTA
*
8943164 TAAATTTATATTAAAGGCCCAAAATATAAACCCGACCCAATTTACAAGCCCAACCCGGTCTAGGC
586 TAAATTTATATTAAAGGCCCAAAATATAAACCCGACCAAATTTACAAGCCCAACCCGGTCTAGGC
8943229 CCAAAACTAACCCTAAACCCAATTAGGGTTTGTATAATTTCTAGCAGCCGCTAACTCCTT
651 CCAAAACTAACCCTAAACCCAATTAGGGTTTGTATAATTTCTAGCAGCCGCTAACTCCTT
8943289 T
1 T
8943290 CAACCGTTGG
Statistics
Matches: 709, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
710 709 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (710 bp):
TTGTTCGACCTTAGTTTGATTCATCACCTATGGAGTTGAATGAAAGAAGAACCTCTCTTGAGGAT
CAACAGTTTCAGAAGAAGTTCATAAGAAGAAGAGCTCGTCTGAAGAAGGAGAATAAGTTCATAAT
GAGAAGAATTTGTTCAAGCTTGCCTTAATTCATCACATATGAAGCCGAACTAACAACCCCTCTTT
CAAGGATCAGCATTTCCAGAAGGAGTTCATAATGAGAATGACTCATCTGACGAGGAATAAAAAGT
TCATAATAAGAAGAACTTGTTCAACTTTTTGCTAGATTACATCACAGGAAGAGATGAATTGTCAT
CCCCAATAAAAGAGTTCATAATGAGAAGAACTTGTTCAACATTGCCATCCCAATCAAGTGAAGTC
AAATGGATAAAAAAAACTTATTATCTTATTGTCTTTGCCCTATTCTTGTTAACAAAAGAATGAGC
AAAGAGGGCAGCTGAAGATACTAGTTTTTTCATCCATTTGTTTTTATTTATATTTATATTATTAG
TTTTATTCATTATAAATATTATTATAATTATTTTATTTTATTTTATTATTTTATTATTATTATTA
TAAATTTATATTAAAGGCCCAAAATATAAACCCGACCAAATTTACAAGCCCAACCCGGTCTAGGC
CCAAAACTAACCCTAAACCCAATTAGGGTTTGTATAATTTCTAGCAGCCGCTAACTCCTT
Found at i:8943687 original size:4 final size:4
Alignment explanation
Indices: 8943678--8943707 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
8943668 TCCATAAAAC
8943678 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AG
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AG
8943708 GATAGAGAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:8944035 original size:14 final size:15
Alignment explanation
Indices: 8944014--8944043 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
8944004 TCTCTCTCTT
8944014 AGAGAGAGAATGAGAA
1 AGAGAGA-AATGAGAA
8944030 AGAGAGAAATGAGA
1 AGAGAGAAATGAGA
8944044 GAACCGACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.57, C:0.00, G:0.37, T:0.07
Consensus pattern (15 bp):
AGAGAGAAATGAGAA
Found at i:8947426 original size:31 final size:29
Alignment explanation
Indices: 8947378--8947436 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 29
8947368 ATTTCAAAAT
8947378 TATAATTATGAAAAAAATATATTAATTTATA
1 TATAATTATGAAAAAAATAT-TT-ATTTATA
*
8947409 TATATTTAT-AAATAAAATATTTATTTAT
1 TATAATTATGAAA-AAAATATTTATTTAT
8947437 TAAGAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 6 0.23
30 5 0.19
31 15 0.58
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (29 bp):
TATAATTATGAAAAAAATATTTATTTATA
Found at i:8947531 original size:20 final size:19
Alignment explanation
Indices: 8947492--8947533 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
8947482 TTTCTTCGAT
8947492 ATTAAAAAATAAATAAATA
1 ATTAAAAAATAAATAAATA
* *
8947511 ATTAAAATAATTAATATATA
1 ATTAAAA-AATAAATAAATA
8947531 ATT
1 ATT
8947534 TATAAAATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
ATTAAAAAATAAATAAATA
Found at i:8949113 original size:3 final size:3
Alignment explanation
Indices: 8949107--8949167 Score: 81
Period size: 3 Copynumber: 20.7 Consensus size: 3
8949097 TAATATTTAT
* *
8949107 TAA TAA TAA -AA TAA TAA TAA TAA TAA TAA TTA TAA TTA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8949154 TAA T-A TAAA TAA TA
1 TAA TAA T-AA TAA TA
8949168 TTCAAATGAA
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
2 4 0.08
3 45 0.88
4 2 0.04
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:8949168 original size:9 final size:10
Alignment explanation
Indices: 8949094--8949168 Score: 63
Period size: 9 Copynumber: 7.9 Consensus size: 10
8949084 ATTGGGCCTG
*
8949094 TAATAATATT
1 TAATAATATA
*
8949104 TATTAATA-A
1 TAATAATATA
8949113 TAA-AATA-A
1 TAATAATATA
8949121 TAATAATA-A
1 TAATAATATA
8949130 TAATAAT-TA
1 TAATAATATA
*
8949139 TAATTATA-A
1 TAATAATATA
8949148 TAATAATAATA
1 TAATAAT-ATA
8949159 TAAATAATAT
1 T-AATAATAT
8949169 TCAAATGAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
8 8 0.15
9 28 0.52
10 8 0.15
11 4 0.07
12 6 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (10 bp):
TAATAATATA
Found at i:8949696 original size:113 final size:113
Alignment explanation
Indices: 8949578--8950016 Score: 628
Period size: 113 Copynumber: 3.9 Consensus size: 113
8949568 TTGGAAAAGT
** *
8949578 TGATCCATTAAGTGATGAATTTAAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
1 TGATCCACCAAGTGATGAATTTAAGCAAAAAGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
*
8949643 TTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGTATTAC
66 TTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGAATTAC
* * *
8949691 TGATCCACCGAGTGATGAATTTAAGCAAAAAGTTGAACAAGTTCTTCTCTTTATGAACTTT-TTC
1 TGATCCACCAAGTGATGAATTTAAGCAAAAAGTTGAACAAATTCTTCTCATTATGAA-TTTCTTC
* ** ** *
8949755 TTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAAGT
65 TTTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGAATTA-C
* * * *
8949805 TGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
1 TGATCCACCAAGTGATGAATTTAAGCAAAAAGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
* * *
8949870 TTCTTCTTCAGATGAGCTCTTCTCATTATGAACTCTAACTGGCATTGC
66 TTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGAATTAC
* * *
8949918 TGATCCACCGAGTGATGAATTTAAGCAAAAAGTTGAACAAATTCTTCTTATTATGAACTTCTTCT
1 TGATCCACCAAGTGATGAATTTAAGCAAAAAGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
* *
8949983 TTATTCTTCAGATGAGTTATTCTCATTATGAACT
66 TTCTTCTTCAGATGAGTTCTTCTCATTATGAACT
8950017 TTCTCTAGAA
Statistics
Matches: 284, Mismatches: 39, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
113 188 0.66
114 96 0.34
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (113 bp):
TGATCCACCAAGTGATGAATTTAAGCAAAAAGTTGAACAAATTCTTCTCATTATGAATTTCTTCT
TTCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTAACTGGAATTAC
Found at i:8949836 original size:227 final size:227
Alignment explanation
Indices: 8949547--8950055 Score: 853
Period size: 227 Copynumber: 2.2 Consensus size: 227
8949537 CTTCTTCTTC
* * * * *
8949547 CTTCTTCATTGTGAACTTTCTTTGG-AAAAGTTGATCCATTAAGTGATGAATTTAAGCAAAAGGT
1 CTTC-TCATTATGAACTTTCTCTGGAAAAAGTTGATCCATCAAGTGATGGATTTGAGCAAAAGGT
*
8949611 TGAACAAATTCTTCTCATTATGAATTTCTTCTTTCTTCTTCAGATGAGTTCTTCTCATTATGAAC
65 TGAACAAATTCTTCTCATTATGAATTTCTTCTTTCTTCTTCAGATGAGCTCTTCTCATTATGAAC
* *
8949676 TCTAACTGGTATTACTGATCCACCGAGTGATGAATTTAAGCAAAAAGTTGAACAAGTTCTTCTCT
130 TCTAACTGGCATTACTGATCCACCGAGTGATGAATTTAAGCAAAAAGTTGAACAAATTCTTCT-T
* *
8949741 -TTATGAACTTTTTCTTTCTTCTTCAGATGAGTT
194 ATTATGAACTTCTTCTTTATTCTTCAGATGAGTT
8949774 CTTCTCATTATGAACTTTCTCTGGAAAAAGTTGATCCATCAAGTGATGGATTTGAGCAAAAGGTT
1 CTTCTCATTATGAACTTTCTCTGGAAAAAGTTGATCCATCAAGTGATGGATTTGAGCAAAAGGTT
8949839 GAACAAATTCTTCTCATTATGAATTTCTTCTTTCTTCTTCAGATGAGCTCTTCTCATTATGAACT
66 GAACAAATTCTTCTCATTATGAATTTCTTCTTTCTTCTTCAGATGAGCTCTTCTCATTATGAACT
*
8949904 CTAACTGGCATTGCTGATCCACCGAGTGATGAATTTAAGCAAAAAGTTGAACAAATTCTTCTTAT
131 CTAACTGGCATTACTGATCCACCGAGTGATGAATTTAAGCAAAAAGTTGAACAAATTCTTCTTAT
8949969 TATGAACTTCTTCTTTATTCTTCAGATGAGTT
196 TATGAACTTCTTCTTTATTCTTCAGATGAGTT
* *
8950001 ATTCTCATTATGAACTTTCTCTAGAAAAAGCTT-ATCCATCAAGTGATGGATTTGA
1 CTTCTCATTATGAACTTTCTCTGGAAAAAG-TTGATCCATCAAGTGATGGATTTGA
8950056 ATCTTTGCTA
Statistics
Matches: 266, Mismatches: 13, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
226 19 0.07
227 245 0.92
228 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (227 bp):
CTTCTCATTATGAACTTTCTCTGGAAAAAGTTGATCCATCAAGTGATGGATTTGAGCAAAAGGTT
GAACAAATTCTTCTCATTATGAATTTCTTCTTTCTTCTTCAGATGAGCTCTTCTCATTATGAACT
CTAACTGGCATTACTGATCCACCGAGTGATGAATTTAAGCAAAAAGTTGAACAAATTCTTCTTAT
TATGAACTTCTTCTTTATTCTTCAGATGAGTT
Found at i:8951215 original size:19 final size:19
Alignment explanation
Indices: 8951191--8951239 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 19
8951181 AAAATAAAAG
8951191 AATAAATTGAATTTTCTAA
1 AATAAATTGAATTTTCTAA
*
8951210 AATAAATTGAA---TCTCA
1 AATAAATTGAATTTTCTAA
8951226 AATAAATTGAATTT
1 AATAAATTGAATTT
8951240 AGAGAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 15 0.58
19 11 0.42
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (19 bp):
AATAAATTGAATTTTCTAA
Found at i:8951610 original size:6 final size:6
Alignment explanation
Indices: 8951594--8951640 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
8951584 TGACCCTCCT
8951594 TTTTTC TTTTTTC TTTTTC --TTTC TTTTTC TTTTTC TCTTTT- TTTTTC
1 TTTTTC -TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC T-TTTTC TTTTTC
8951641 ATTTAATTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
4 4 0.11
5 4 0.11
6 18 0.50
7 10 0.28
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTC
Found at i:8951619 original size:24 final size:24
Alignment explanation
Indices: 8951594--8951640 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
8951584 TGACCCTCCT
8951594 TTTTTCTTTTT-TCTTTTTCTTTC
1 TTTTTCTTTTTCTCTTTTTCTTTC
*
8951617 TTTTTCTTTTTCTCTTTTTTTTTC
1 TTTTTCTTTTTCTCTTTTTCTTTC
8951641 ATTTAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (24 bp):
TTTTTCTTTTTCTCTTTTTCTTTC
Found at i:8951622 original size:16 final size:17
Alignment explanation
Indices: 8951596--8951640 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 17
8951586 ACCCTCCTTT
8951596 TTTCTTTTTTCTTTTTC
1 TTTCTTTTTTCTTTTTC
8951613 TTTC-TTTTTCTTTTTC
1 TTTCTTTTTTCTTTTTC
*
8951629 TCTTTTTTTTTC
1 T-TTCTTTTTTC
8951641 ATTTAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 13 0.52
17 6 0.24
18 6 0.24
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTCTTTTTTCTTTTTC
Found at i:8951624 original size:23 final size:23
Alignment explanation
Indices: 8951594--8951655 Score: 79
Period size: 24 Copynumber: 2.7 Consensus size: 23
8951584 TGACCCTCCT
8951594 TTTTTCTTTTTTCTTTTTCTTTC
1 TTTTTCTTTTTTCTTTTTCTTTC
*
8951617 TTTTTCTTTTTCTCTTTTTTTTTC
1 TTTTTCTTTTT-TCTTTTTCTTTC
* **
8951641 ATTTAATTTTTTCTT
1 TTTTTCTTTTTTCTT
8951656 CAAGCATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 15 0.44
24 19 0.56
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.81
Consensus pattern (23 bp):
TTTTTCTTTTTTCTTTTTCTTTC
Found at i:8958998 original size:15 final size:15
Alignment explanation
Indices: 8958975--8959006 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8958965 TGCAATGAAT
8958975 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
8958990 AATGCATGTATGCAA
1 AATGAATGTATGCAA
8959005 AA
1 AA
8959007 GGTATTGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:8962273 original size:24 final size:23
Alignment explanation
Indices: 8962246--8962298 Score: 54
Period size: 24 Copynumber: 2.2 Consensus size: 23
8962236 AATACTTGCA
8962246 AATAAAATGAAATAATAAT-AAAAT
1 AATAAAAT-AAATAAT-ATGAAAAT
* *
8962270 AATATATATAAATACTATGAAAAT
1 AATA-AAATAAATAATATGAAAAT
8962294 AATAA
1 AATAA
8962299 GTATATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 3 0.12
24 19 0.76
25 3 0.12
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (23 bp):
AATAAAATAAATAATATGAAAAT
Found at i:8962316 original size:26 final size:24
Alignment explanation
Indices: 8962265--8962318 Score: 63
Period size: 26 Copynumber: 2.2 Consensus size: 24
8962255 AAATAATAAT
*
8962265 AAAATAATATATATAAATACTATG
1 AAAATAATATATATAAAAACTATG
* *
8962289 AAAATAATAAGTATATAAAAATTTTG
1 AAAATAAT-A-TATATAAAAACTATG
8962315 AAAA
1 AAAA
8962319 GAAAGAATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 8 0.32
25 1 0.04
26 16 0.64
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (24 bp):
AAAATAATATATATAAAAACTATG
Found at i:8962848 original size:31 final size:29
Alignment explanation
Indices: 8962800--8962858 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 29
8962790 ATTTCAAAAT
8962800 TATAATTATGAAAAAAATATATTAATTTATA
1 TATAATTATGAAAAAAATAT-TT-ATTTATA
*
8962831 TATATTTAT-AAATAAAATATTTATTTAT
1 TATAATTATGAAA-AAAATATTTATTTAT
8962859 TTAGAAATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 6 0.23
30 5 0.19
31 15 0.58
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (29 bp):
TATAATTATGAAAAAAATATTTATTTATA
Found at i:8962953 original size:20 final size:19
Alignment explanation
Indices: 8962914--8962955 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
8962904 TTTCTTCGAT
8962914 ATTAAAAAATAAATAAATA
1 ATTAAAAAATAAATAAATA
* *
8962933 ATTAAAACAATTAATATATA
1 ATTAAAA-AATAAATAAATA
8962953 ATT
1 ATT
8962956 TATAAAATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
ATTAAAAAATAAATAAATA
Found at i:8963028 original size:120 final size:116
Alignment explanation
Indices: 8962823--8963060 Score: 271
Period size: 120 Copynumber: 2.0 Consensus size: 116
8962813 AAAATATATT
* * * * *
8962823 AATTTATATATATTTATAAATAAAATATTTATTTATTTAGAAATATCAAAAAAGGACTTCTAGGT
1 AATTAATATATATTTATAAATAAAATATTTATTTATTTAAAAATATCAAAAAAGGACATCCAAGT
* * * *
8962888 GCCTTAAGACAGCTCTTTTCTTCGATATTAAAAAATAAATAAATAATTAAAAC
66 ACCTTAAGACAGCTCCTTTCTT-AATACTAAAAAATAAATAAAT-ATTAAAAC
** *
8962941 AATTAATATATAATTTATAAAATAGGATATTTATTTATTTAAAAATATCAGAAAATGGACATCCA
1 AATTAATATAT-ATTTAT-AAATAAAATATTTATTTATTTAAAAATATCA-AAAAAGGACATCCA
* ** * *
8963006 ATTATTTTAAGACTGC-CCTTTCTTAATACTGAAAAATAAATAAATATTAAAAC
63 AGTACCTTAAGACAGCTCCTTTCTTAATACTAAAAAATAAATAAATATTAAAAC
8963059 AA
1 AA
8963061 GATTAAAATA
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
118 20 0.20
119 24 0.24
120 35 0.35
121 21 0.21
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.37
Consensus pattern (116 bp):
AATTAATATATATTTATAAATAAAATATTTATTTATTTAAAAATATCAAAAAAGGACATCCAAGT
ACCTTAAGACAGCTCCTTTCTTAATACTAAAAAATAAATAAATATTAAAAC
Found at i:8964550 original size:3 final size:3
Alignment explanation
Indices: 8964542--8964596 Score: 69
Period size: 3 Copynumber: 18.7 Consensus size: 3
8964532 TTATATTTAT
* *
8964542 TAA TAA TAA -AA TAA TAA TAA TAA TTA TAA TTA TAA TAA TAA TAA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8964588 TAAA TAA TA
1 T-AA TAA TA
8964597 TTCAAATGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 4 0.09
3 39 0.87
4 2 0.04
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:8964985 original size:41 final size:41
Alignment explanation
Indices: 8964940--8965047 Score: 207
Period size: 41 Copynumber: 2.6 Consensus size: 41
8964930 ACATTTAAGA
8964940 TTCTTAATATTGTTCTCCATACATTACTGATCCACGGAAGT
1 TTCTTAATATTGTTCTCCATACATTACTGATCCACGGAAGT
8964981 TTCTTAATATTGTTCTCCATACATTACTGATCCACGGAAGT
1 TTCTTAATATTGTTCTCCATACATTACTGATCCACGGAAGT
*
8965022 TTCTTAATATTGTTATCCATACATTA
1 TTCTTAATATTGTTCTCCATACATTA
8965048 ATATTGTAAA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
41 66 1.00
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.42
Consensus pattern (41 bp):
TTCTTAATATTGTTCTCCATACATTACTGATCCACGGAAGT
Found at i:8966196 original size:2 final size:2
Alignment explanation
Indices: 8966189--8966214 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
8966179 GAGTGTGGGA
8966189 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
8966215 TATTGAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8968229 original size:23 final size:23
Alignment explanation
Indices: 8968201--8968256 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 23
8968191 CTCCACACCA
* *
8968201 CTGTTGATTGAATCTTCTAGAAG
1 CTGTTGACTGAACCTTCTAGAAG
* *
8968224 TTGTTGACTGAGCCTTCTAGAAG
1 CTGTTGACTGAACCTTCTAGAAG
8968247 CTGTTGACTG
1 CTGTTGACTG
8968257 GGCACCACGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.38
Consensus pattern (23 bp):
CTGTTGACTGAACCTTCTAGAAG
Found at i:8976050 original size:54 final size:54
Alignment explanation
Indices: 8976009--8976592 Score: 835
Period size: 54 Copynumber: 10.8 Consensus size: 54
8975999 CATACGGTCG
* * ** * * **
8976009 TTCATAAACATATTATGAATTTTGTGATTTGCACACATAGTGCCGAAACAATTA
1 TTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTTA
* * * * *
8976063 TTCATCAACATATGATGAATTCCGTTAATTTCACACTGAGTGCCAAAATGGTTA
1 TTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTTA
*
8976117 TTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGAGCCGAAACGGTTA
1 TTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTTA
* * * * *
8976171 TTCATCAACATATGTTGAATTCTGTGAATTACACACTTAATGTCGAAACGGTTA
1 TTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTTA
* *
8976225 TTCATCAACATATGATGAATTTCGTAAATTGCACACTTAGTGCCGAAACGGTTA
1 TTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTTA
* * *
8976279 TTCATCAACATATGCTGAATTCTGTAAATTGCACACTTAGTGCCGAAACGGTTA
1 TTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTTA
* **
8976333 TTCATCAACATATGATGAATTCCGTGAAATGCACACTTAGTGCCGAAACAATTA
1 TTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTTA
* * * * *
8976387 TTCATCAACATATGATGAATTACGTGAATTACACACATAGTGTCGAAACGATTA
1 TTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTTA
*
8976441 TTCATCAACATATGATGAATTCCGTAAATTGCACACTTAGTGCCGAAACGGTTA
1 TTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTTA
* *
8976495 TTCATCAACATATGATGAATTCCATTAATTGCACACTTAGTGCCGAAACGGTTA
1 TTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTTA
* *
8976549 TTCATCAACATATGATGAATTCCATGAATTGCATACTTAGTGCC
1 TTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCC
8976593 TATTTGGTAA
Statistics
Matches: 473, Mismatches: 57, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 473 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (54 bp):
TTCATCAACATATGATGAATTCCGTGAATTGCACACTTAGTGCCGAAACGGTTA
Found at i:8981361 original size:54 final size:54
Alignment explanation
Indices: 8981265--8981414 Score: 171
Period size: 54 Copynumber: 2.8 Consensus size: 54
8981255 TAGTGCCCAT
* * * * *
8981265 ACGGTCGTTCATAAACATATTATGAATTCCT-TGATTTATACACAT-AGTG-TCGAA
1 ACGGTCATTCATCAACATATGATGAATT-CTGTGAATTGTACAC-TGAGTGCT-GAA
8981319 ACGGTCATTCATCAACATATGATGAATTCTGTGAATTGTACACTGAGTGCTGAA
1 ACGGTCATTCATCAACATATGATGAATTCTGTGAATTGTACACTGAGTGCTGAA
* * * *
8981373 ACAGTAATTCATCAACATATGATAAATTCCGTGAATTGTACA
1 ACGGTCATTCATCAACATATGATGAATTCTGTGAATTGTACA
8981415 TGTTGAACTA
Statistics
Matches: 84, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
53 3 0.04
54 80 0.95
55 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.33
Consensus pattern (54 bp):
ACGGTCATTCATCAACATATGATGAATTCTGTGAATTGTACACTGAGTGCTGAA
Found at i:8981611 original size:20 final size:20
Alignment explanation
Indices: 8981547--8981616 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
8981537 CAAAATTTTT
* *
8981547 TATGAATAGTA-AAATACTA
1 TATGAATAGTACCAATACTG
*
8981566 TATGAATAGTACCAATATTG
1 TATGAATAGTACCAATACTG
*
8981586 TATGAATAGTACCGATACTG
1 TATGAATAGTACCAATACTG
* *
8981606 TGTGAACAGTA
1 TATGAATAGTA
8981617 GTATCGATAC
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
19 11 0.26
20 32 0.74
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.31
Consensus pattern (20 bp):
TATGAATAGTACCAATACTG
Found at i:8983837 original size:64 final size:62
Alignment explanation
Indices: 8983767--8983888 Score: 147
Period size: 64 Copynumber: 1.9 Consensus size: 62
8983757 TCTTAAATCC
* * * *
8983767 TAATTAAAACACTTAAAA-CTATTTAAAATAAAATATCTAAAAATAATATATAAAATATAAGTCA
1 TAATTAAAACAC-AAAAACCTATTTAAAATAAAATACCT-AAAACAA-AGATAAAATATAAGTCA
** *
8983831 TAATTAAAATGCAAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
1 TAATTAAAACACAAAAACCTATTTAAAATAAAATACCTAAAACAAAGATAAAATATAA
8983889 AAATAATATT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
62 12 0.24
63 10 0.20
64 28 0.56
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.28
Consensus pattern (62 bp):
TAATTAAAACACAAAAACCTATTTAAAATAAAATACCTAAAACAAAGATAAAATATAAGTCA
Found at i:8990951 original size:18 final size:18
Alignment explanation
Indices: 8990913--8990951 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
8990903 GTTGTTTTTA
* *
8990913 AAATAAAAGATAAGAATT
1 AAATAAAAGAAAAGAAAT
*
8990931 AAATAAAAGAAAATAAAT
1 AAATAAAAGAAAAGAAAT
8990949 AAA
1 AAA
8990952 CAAATTAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.08, T:0.18
Consensus pattern (18 bp):
AAATAAAAGAAAAGAAAT
Found at i:8991622 original size:15 final size:12
Alignment explanation
Indices: 8991589--8991630 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
8991579 AAAATACCTA
8991589 AAAATAATATTT
1 AAAATAATATTT
8991601 AAAATAATA-TT
1 AAAATAATATTT
* *
8991612 ATAAATCATAATT
1 A-AAATAATATTT
8991625 AAAATA
1 AAAATA
8991631 CAAAAACCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 3 0.12
12 20 0.77
13 3 0.12
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (12 bp):
AAAATAATATTT
Found at i:8991624 original size:70 final size:67
Alignment explanation
Indices: 8991543--8991718 Score: 221
Period size: 70 Copynumber: 2.6 Consensus size: 67
8991533 TAAAACATCT
* * *
8991543 TAAATCCTAATTAAAACACTTAAAA-CTATTTAAAATAAAATACCTAAAA-ATAATATTTAAAAT
1 TAAATCATAATTAAAATAC-TAAAACCTATTTAAAATAAAATACCTAAAACA-AAGA--TAAAA-
8991606 AATATTA
61 AATATTA
* *
8991613 TAAATCATAATTAAAATACAAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAAAATAT
1 TAAATCATAATTAAAATACTAAAACCTATTTAAAATAAAATACCTAAAACAAAGATAAAAAATAT
*
8991678 TC
66 TA
* *
8991680 TAAAACTTAATTAAAATACTAAAACCTATTTAAAATAAA
1 TAAATCATAATTAAAATACTAAAACCTATTTAAAATAAA
8991719 TTAAAAAGAT
Statistics
Matches: 94, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
67 41 0.44
68 5 0.05
69 4 0.04
70 43 0.46
71 1 0.01
ACGTcount: A:0.59, C:0.11, G:0.01, T:0.30
Consensus pattern (67 bp):
TAAATCATAATTAAAATACTAAAACCTATTTAAAATAAAATACCTAAAACAAAGATAAAAAATAT
TA
Found at i:8991703 original size:19 final size:19
Alignment explanation
Indices: 8991679--8991716 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8991669 AAAAAATATT
*
8991679 CTAAAACTTAATTAAAATA
1 CTAAAACCTAATTAAAATA
*
8991698 CTAAAACCTATTTAAAATA
1 CTAAAACCTAATTAAAATA
8991717 AATTAAAAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (19 bp):
CTAAAACCTAATTAAAATA
Found at i:8991710 original size:67 final size:69
Alignment explanation
Indices: 8991550--8991718 Score: 220
Period size: 67 Copynumber: 2.5 Consensus size: 69
8991540 TCTTAAATCC
* *
8991550 TAATTAAAACACTTAAAA-CTATTTAAAATAAAATACCTAAAAATAATATTTAAAATAATATTAT
1 TAATTAAAATAC-TAAAACCTATTTAAAATAAAATACCTAAAAATAAGA-TTAAAATAATATTAT
*
8991614 AAATCA
64 AAAACA
* * *
8991620 TAATTAAAATACAAAAACCTATTTAAACTAAAATACCTAAAACA-AAGA-TAAAA-AATATTCTA
1 TAATTAAAATACTAAAACCTATTTAAAATAAAATACCTAAAA-ATAAGATTAAAATAATATTATA
*
8991682 AAACT
65 AAACA
8991687 TAATTAAAATACTAAAACCTATTTAAAATAAA
1 TAATTAAAATACTAAAACCTATTTAAAATAAA
8991719 TTAAAAAGAT
Statistics
Matches: 88, Mismatches: 9, Indels: 7
0.85 0.09 0.07
Matches are distributed among these distances:
67 41 0.47
68 5 0.06
69 4 0.05
70 37 0.42
71 1 0.01
ACGTcount: A:0.59, C:0.11, G:0.01, T:0.30
Consensus pattern (69 bp):
TAATTAAAATACTAAAACCTATTTAAAATAAAATACCTAAAAATAAGATTAAAATAATATTATAA
AACA
Found at i:8991718 original size:24 final size:24
Alignment explanation
Indices: 8991624--8991718 Score: 58
Period size: 24 Copynumber: 4.2 Consensus size: 24
8991614 AAATCATAAT
* *
8991624 TAAAATACAAAAACCTATTTAAAC
1 TAAAATACTAAAACCTATTTAAAA
** **
8991648 TAAAATACCTAAAACAAAGATAAAA
1 TAAAATA-CTAAAACCTATTTAAAA
* * *
8991673 -AATATTCTAAAA-C---TT-AAT
1 TAAAATACTAAAACCTATTTAAAA
8991691 TAAAATACTAAAACCTATTTAAAA
1 TAAAATACTAAAACCTATTTAAAA
8991715 TAAA
1 TAAA
8991719 TTAAAAAGAT
Statistics
Matches: 50, Mismatches: 14, Indels: 14
0.64 0.18 0.18
Matches are distributed among these distances:
18 2 0.04
19 11 0.22
20 1 0.02
23 8 0.16
24 17 0.34
25 11 0.22
ACGTcount: A:0.60, C:0.13, G:0.01, T:0.26
Consensus pattern (24 bp):
TAAAATACTAAAACCTATTTAAAA
Found at i:8991731 original size:29 final size:31
Alignment explanation
Indices: 8991663--8991732 Score: 74
Period size: 29 Copynumber: 2.3 Consensus size: 31
8991653 TACCTAAAAC
*
8991663 AAAGATAAAAAATATTCTAAAACTTAATTAA
1 AAAGATAAAAAATATTCTAAAACTAAATTAA
* **
8991694 AATA-CTAAAACCTATT-TAAAA-TAAATTAA
1 AA-AGATAAAAAATATTCTAAAACTAAATTAA
8991723 AAAGATAAAA
1 AAAGATAAAA
8991733 TATAATGTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
28 1 0.03
29 14 0.44
30 5 0.16
31 11 0.34
32 1 0.03
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (31 bp):
AAAGATAAAAAATATTCTAAAACTAAATTAA
Found at i:8994231 original size:21 final size:21
Alignment explanation
Indices: 8994202--8994252 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
8994192 TGATACTGTG
8994202 TGAATAGTAGTATCGATACCA
1 TGAATAGTAGTATCGATACCA
*
8994223 TGAACAGTAGTATCGATACCA
1 TGAATAGTAGTATCGATACCA
8994244 TGAATAGTA
1 TGAATAGTA
8994253 CCGATGCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.27
Consensus pattern (21 bp):
TGAATAGTAGTATCGATACCA
Found at i:8995054 original size:54 final size:54
Alignment explanation
Indices: 8994986--8995483 Score: 755
Period size: 54 Copynumber: 9.2 Consensus size: 54
8994976 TCCCAACAGT
* * *
8994986 ACACTTAGTACCGAAACGGTTTTTCATCAACATATGATGAATTCCGTGAATTGC
1 ACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTCCGTAAATTGC
**
8995040 ACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTCTATAAATTGC
1 ACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTCCGTAAATTGC
** * **
8995094 ACACTTAGTGCCGAAACATTTATTCATCAACATATGTTGAATTATGTAAATTGC
1 ACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTCCGTAAATTGC
* *
8995148 ACACTTAGTACCAAAACGGTTATTCATCAACATATGATGAATTCCGTGAAA-TGC
1 ACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTCCGT-AAATTGC
* * * *
8995202 ACGCTTAGTGTCGAAACGGTTATTCATCAACATATGATGAATTCTGTGAATTGC
1 ACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTCCGTAAATTGC
*
8995256 ACACTTAGTGCCGAAACGATTATTCATCAACATATGATGAATTCCGTAAATTGC
1 ACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTCCGTAAATTGC
*
8995310 ACACTTAGTGCTGAAACGGTTATTCATCAACATATGATGAATTCCGTAAATTGC
1 ACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTCCGTAAATTGC
*
8995364 ACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTCCGTTAATTGC
1 ACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTCCGTAAATTGC
* * * * * *
8995418 ACACTTAGTGCCAAAATGGTTATTCATCAACATATGATGCATTCCATGAATTTC
1 ACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTCCGTAAATTGC
8995472 ACACTTAGTGCC
1 ACACTTAGTGCC
8995484 TATTTGGTAA
Statistics
Matches: 404, Mismatches: 38, Indels: 4
0.91 0.09 0.01
Matches are distributed among these distances:
53 2 0.00
54 399 0.99
55 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (54 bp):
ACACTTAGTGCCGAAACGGTTATTCATCAACATATGATGAATTCCGTAAATTGC
Found at i:8995946 original size:19 final size:20
Alignment explanation
Indices: 8995908--8995951 Score: 65
Period size: 19 Copynumber: 2.2 Consensus size: 20
8995898 CAATTGTAGA
8995908 GATACCTTTATCATAGTATC
1 GATACCTTTATCATAGTATC
8995928 GATACCTTT-TC-TCAGTATC
1 GATACCTTTATCAT-AGTATC
8995947 GATAC
1 GATAC
8995952 TAATTGCATC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 1 0.04
19 13 0.57
20 9 0.39
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (20 bp):
GATACCTTTATCATAGTATC
Found at i:8999654 original size:19 final size:19
Alignment explanation
Indices: 8999626--8999664 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8999616 AAGTTTTATT
8999626 ATACAATTTTTTAG-GCTTA
1 ATACAA-TTTTTAGTGCTTA
*
8999645 ATACACTTTTTAGTGCTTA
1 ATACAATTTTTAGTGCTTA
8999664 A
1 A
8999665 ATTATACCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.31, C:0.13, G:0.10, T:0.46
Consensus pattern (19 bp):
ATACAATTTTTAGTGCTTA
Found at i:9000347 original size:20 final size:21
Alignment explanation
Indices: 9000310--9000352 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
9000300 AAATTAAGCT
* *
9000310 TTTTTATTTTTTTAAAAAATA
1 TTTTTATTTATATAAAAAATA
9000331 TTTTTATTTATAT-AAAAATA
1 TTTTTATTTATATAAAAAATA
9000351 TT
1 TT
9000353 ATAATTGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTTATTTATATAAAAAATA
Found at i:9001065 original size:7 final size:7
Alignment explanation
Indices: 9001055--9001107 Score: 61
Period size: 7 Copynumber: 7.6 Consensus size: 7
9001045 ACCCAAACCT
*
9001055 TAAATCT
1 TAAATCC
*
9001062 TAAACCC
1 TAAATCC
9001069 TAAATCC
1 TAAATCC
9001076 TAAATCC
1 TAAATCC
*
9001083 TAAATCA
1 TAAATCC
* *
9001090 TATACCC
1 TAAATCC
9001097 TAAATCC
1 TAAATCC
9001104 TAAA
1 TAAA
9001108 CATTTATTAG
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.28
Consensus pattern (7 bp):
TAAATCC
Found at i:9001072 original size:14 final size:14
Alignment explanation
Indices: 9001049--9001108 Score: 75
Period size: 14 Copynumber: 4.3 Consensus size: 14
9001039 CTCCAAACCC
* *
9001049 AAACCTTAAATCTT
1 AAACCCTAAATCCT
9001063 AAACCCTAAATCCT
1 AAACCCTAAATCCT
* *
9001077 AAATCCTAAATCAT
1 AAACCCTAAATCCT
*
9001091 ATACCCTAAATCCT
1 AAACCCTAAATCCT
9001105 AAAC
1 AAAC
9001109 ATTTATTAGT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 38 1.00
ACGTcount: A:0.45, C:0.28, G:0.00, T:0.27
Consensus pattern (14 bp):
AAACCCTAAATCCT
Found at i:9001081 original size:21 final size:20
Alignment explanation
Indices: 9001043--9001108 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
9001033 TTTTTACTCC
*
9001043 AAACCCAAACCTTAAATCTT
1 AAACCCAAACCTTAAATCCT
9001063 AAACCCTAAATCC-TAAATCCT
1 AAACCC-AAA-CCTTAAATCCT
* *
9001084 AAA-TCATATACCCTAAATCCT
1 AAACCCA-A-ACCTTAAATCCT
9001105 AAAC
1 AAAC
9001109 ATTTATTAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
19 1 0.03
20 10 0.26
21 25 0.66
22 2 0.05
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.24
Consensus pattern (20 bp):
AAACCCAAACCTTAAATCCT
Found at i:9005820 original size:41 final size:42
Alignment explanation
Indices: 9005763--9005850 Score: 133
Period size: 44 Copynumber: 2.1 Consensus size: 42
9005753 GTTTCAGAGA
9005763 TTTTGTAATTAGTATTT-TACTACTCTTCTACAGACAAATTC
1 TTTTGTAATTAGTATTTCTACTACTCTTCTACAGACAAATTC
* *
9005804 TTTTGTAATTAGTATTTCACTACTTCTCTTCTACAGATAAATTC
1 TTTTGTAATTAGTATTT--CTACTACTCTTCTACAGACAAATTC
9005848 TTT
1 TTT
9005851 CATCTTTTGA
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
41 17 0.40
44 25 0.60
ACGTcount: A:0.27, C:0.17, G:0.07, T:0.49
Consensus pattern (42 bp):
TTTTGTAATTAGTATTTCTACTACTCTTCTACAGACAAATTC
Found at i:9007830 original size:198 final size:198
Alignment explanation
Indices: 9007492--9007895 Score: 736
Period size: 198 Copynumber: 2.0 Consensus size: 198
9007482 GTTTTCCTTC
* **
9007492 ACATAAAGCCTTTCATTTCATGGGCTTTAGTTTCATTCCTTTTGATGTTTTCTCAATTTGATCTC
1 ACATAAAGCCTTTCATTTCATGGGCTTTAGTCTCATTCCTTTCAATGTTTTCTCAATTTGATCTC
9007557 AATATTAACCCTTCAGTTAGTGAATCTGCGATGTTATCCTTTGATCTTACAAAGTCAACAATGAT
66 AATATTAACCCTTCAGTTAGTGAATCTGCGATGTTATCCTTTGATCTTACAAAGTCAACAATGAT
9007622 AATTCCATTTGATATTAATTGTATAATGGTATTGTGTTGATGATGTATGTATCTCAACTTACCAT
131 AATTCCATTTGATATTAATTGTATAATGGTATTGTGTTGATGATGTATGTATCTCAACTTACCAT
9007687 TAT
196 TAT
*
9007690 ACATAAAGCCTTTCATTTCATGGGCTTTGGTCTCATTCCTTTCAATGTTTTCTCAATTTGATCTC
1 ACATAAAGCCTTTCATTTCATGGGCTTTAGTCTCATTCCTTTCAATGTTTTCTCAATTTGATCTC
* *
9007755 AATATTAACCCTTCAGTTAGTGAATCTGCGATGTTATCCTTTGATCTTACAAATTCAACAGTGAT
66 AATATTAACCCTTCAGTTAGTGAATCTGCGATGTTATCCTTTGATCTTACAAAGTCAACAATGAT
* *
9007820 AATTCCATTTGATATTAGTTGTCTAATGGTATTGTGTTGATGATGTATGTATCTCAACTTACCAT
131 AATTCCATTTGATATTAATTGTATAATGGTATTGTGTTGATGATGTATGTATCTCAACTTACCAT
9007885 TAT
196 TAT
9007888 ACATAAAG
1 ACATAAAG
9007896 TTCTGTGCTT
Statistics
Matches: 198, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
198 198 1.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (198 bp):
ACATAAAGCCTTTCATTTCATGGGCTTTAGTCTCATTCCTTTCAATGTTTTCTCAATTTGATCTC
AATATTAACCCTTCAGTTAGTGAATCTGCGATGTTATCCTTTGATCTTACAAAGTCAACAATGAT
AATTCCATTTGATATTAATTGTATAATGGTATTGTGTTGATGATGTATGTATCTCAACTTACCAT
TAT
Found at i:9009210 original size:58 final size:56
Alignment explanation
Indices: 9009081--9009215 Score: 139
Period size: 58 Copynumber: 2.4 Consensus size: 56
9009071 ACTTAACGAT
* * ** * * *
9009081 TTATTTATTTCC-TTCAAAATAGAATCATACTTGATTTCCAAGAAAATAAATTCAA
1 TTATTTATTTCCTTTTAAAAAAGAATCATACGAGATTCCCAAAAAAATAAACTCAA
* *
9009136 TCTATTGATTT-ATTTTATAAACAAGAATCATACGAGATTCCCAAAAAAATAAACTCAA
1 T-TATTTATTTCCTTTTA-AAA-AAGAATCATACGAGATTCCCAAAAAAATAAACTCAA
*
9009194 TTATTTATTTCCTTTTACAAAA
1 TTATTTATTTCCTTTTAAAAAA
9009216 TAGGAAAATA
Statistics
Matches: 63, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
55 1 0.02
56 13 0.21
57 13 0.21
58 36 0.57
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.38
Consensus pattern (56 bp):
TTATTTATTTCCTTTTAAAAAAGAATCATACGAGATTCCCAAAAAAATAAACTCAA
Found at i:9009290 original size:39 final size:38
Alignment explanation
Indices: 9009246--9009416 Score: 184
Period size: 39 Copynumber: 4.4 Consensus size: 38
9009236 TTTCTTCGAA
* * *
9009246 TTATTTCATTTTATAAAATAGGAAACTAAATCCAATGAT
1 TTATTTCCTTTTACAAAATAGGAAA-TAAATCCAACGAT
*
9009285 TTATTTCCTTTTACGAAATAGGATAATAAATCCAACGAT
1 TTATTTCCTTTTACAAAATAGGA-AATAAATCCAACGAT
* * * *
9009324 TTATTTCCTTTTAC-AAATCAGGAAATTAAATTCTATGAC
1 TTATTTCCTTTTACAAAAT-AGGAAA-TAAATCCAACGAT
* *
9009363 TTATTTTTCTTTT-CAAAATAGGAAAATAAATCCAACCAT
1 TTA-TTTCCTTTTACAAAATAGG-AAATAAATCCAACGAT
9009402 TTATTTCCTTTTACA
1 TTATTTCCTTTTACA
9009417 TAGTAGAATC
Statistics
Matches: 110, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
38 14 0.13
39 79 0.72
40 17 0.15
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.40
Consensus pattern (38 bp):
TTATTTCCTTTTACAAAATAGGAAATAAATCCAACGAT
Found at i:9009415 original size:78 final size:77
Alignment explanation
Indices: 9009246--9009416 Score: 218
Period size: 78 Copynumber: 2.2 Consensus size: 77
9009236 TTTCTTCGAA
* * * * *
9009246 TTATTTCATTTTATAAAATAGGAAACTAAATCCAATGATTTATTTCCTTTTACGAAATAGGATAA
1 TTATTTCCTTTTA-CAAATAGGAAACTAAATCCAATGACTTATTTCCTTTTACAAAATAGGAAAA
*
9009311 TAAATCCAACGAT
65 TAAATCCAACCAT
* * * *
9009324 TTATTTCCTTTTACAAATCAGGAAATTAAATTCTATGACTTATTTTTCTTTT-CAAAATAGGAAA
1 TTATTTCCTTTTACAAAT-AGGAAACTAAATCCAATGACTTA-TTTCCTTTTACAAAATAGGAAA
9009388 ATAAATCCAACCAT
64 ATAAATCCAACCAT
9009402 TTATTTCCTTTTACA
1 TTATTTCCTTTTACA
9009417 TAGTAGAATC
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
77 4 0.05
78 69 0.85
79 8 0.10
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.40
Consensus pattern (77 bp):
TTATTTCCTTTTACAAATAGGAAACTAAATCCAATGACTTATTTCCTTTTACAAAATAGGAAAAT
AAATCCAACCAT
Found at i:9009483 original size:39 final size:39
Alignment explanation
Indices: 9009440--9009515 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 39
9009430 CAAGATTCTT
* *
9009440 AGGAAAATACATT-TACCAATTTATTTCTTTTTTCAAAAC
1 AGGAAAATAAATTCTA-CAATTTATTTCTTTTTACAAAAC
*
9009479 AGGAAAATAAATTCTACTATTTATTTCTTTTTACAAA
1 AGGAAAATAAATTCTACAATTTATTTCTTTTTACAAA
9009516 TTAGAATCAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 31 0.94
40 2 0.06
ACGTcount: A:0.39, C:0.13, G:0.05, T:0.42
Consensus pattern (39 bp):
AGGAAAATAAATTCTACAATTTATTTCTTTTTACAAAAC
Found at i:9009544 original size:97 final size:96
Alignment explanation
Indices: 9009363--9009545 Score: 226
Period size: 97 Copynumber: 1.9 Consensus size: 96
9009353 ATTCTATGAC
* *
9009363 TTATTTTTCTTTTCAAAATAGGAAAATAAATCCAACCATTTATTTCCTTTTACATAGTAGAATCA
1 TTATTTTTCTTTTCAAAACAGGAAAATAAATCCAACCATTTATTTCCTTTTACAAAGTAGAATCA
** *
9009428 TTCAAGATTCTTAGGAAAATACATTTACCAAT
66 TT-AAGATTCACAGAAAAATACATTTACCAAT
* * * * *
9009460 TTATTTCTT-TTTTCAAAACAGGAAAATAAATTCTACTATTTATTTCTTTTTACAAATTAGAATC
1 TTATTT-TTCTTTTCAAAACAGGAAAATAAATCCAACCATTTATTTCCTTTTACAAAGTAGAATC
9009524 A-TATAGTATTCACAGAAAAATA
65 ATTA-AG-ATTCACAGAAAAATA
9009546 AATCCATCGA
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
95 1 0.01
96 3 0.04
97 67 0.92
98 2 0.03
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.40
Consensus pattern (96 bp):
TTATTTTTCTTTTCAAAACAGGAAAATAAATCCAACCATTTATTTCCTTTTACAAAGTAGAATCA
TTAAGATTCACAGAAAAATACATTTACCAAT
Found at i:9009561 original size:97 final size:96
Alignment explanation
Indices: 9009360--9009586 Score: 217
Period size: 97 Copynumber: 2.3 Consensus size: 96
9009350 TAAATTCTAT
* *
9009360 GACTTATTT-TTCTTTTCAAAATAGGAAAATAAATCCAACCATTTATTTCCTTTTACATAGTAGA
1 GACTTATTTCTT-TTTTCAAAACAGGAAAATAAATCCAACCATTTATTTCCTTTTACAAAGTAGA
** * * **
9009424 ATCATTCAAGATTCTTAGGAAAATACATTTACC
65 ATCATT-AAGATTCACAGAAAAATAAATCCACC
* * * * * * *
9009457 AATTTATTTCTTTTTTCAAAACAGGAAAATAAATTCTACTATTTATTTCTTTTTACAAATTAGAA
1 GACTTATTTCTTTTTTCAAAACAGGAAAATAAATCCAACCATTTATTTCCTTTTACAAAGTAGAA
*
9009522 TCA-TATAGTATTCACAGAAAAATAAATCCATC
66 TCATTA-AG-ATTCACAGAAAAATAAATCCACC
** *
9009554 GACTTATTTTCTTTCGT-AAAACAAGAAAATAAA
1 GACTTA-TTTCTTTTTTCAAAACAGGAAAATAAA
9009587 CTCAATGATT
Statistics
Matches: 105, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
95 1 0.01
96 3 0.03
97 91 0.87
98 10 0.10
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (96 bp):
GACTTATTTCTTTTTTCAAAACAGGAAAATAAATCCAACCATTTATTTCCTTTTACAAAGTAGAA
TCATTAAGATTCACAGAAAAATAAATCCACC
Found at i:9009668 original size:64 final size:63
Alignment explanation
Indices: 9009571--9009692 Score: 165
Period size: 64 Copynumber: 1.9 Consensus size: 63
9009561 TTTCTTTCGT
* *
9009571 AAAACAAGAAAATAAACTCAATGATTTCTTTCC-TTTCATAAAATAGGAAAATAAATCTTATAC
1 AAAACAAGAAAATAAACTCAACGATTTCTTTCCTTTTC-CAAAATAGGAAAATAAATCTTATAC
* * * *
9009634 AAAACAGGAAAACTAAATTCAACGATTTGTTTCCTTTTCCAAAATATGAAAATAAATCT
1 AAAACAAGAAAA-TAAACTCAACGATTTCTTTCCTTTTCCAAAATAGGAAAATAAATCT
9009693 GACGATTTAT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
63 11 0.22
64 36 0.71
65 4 0.08
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.30
Consensus pattern (63 bp):
AAAACAAGAAAATAAACTCAACGATTTCTTTCCTTTTCCAAAATAGGAAAATAAATCTTATAC
Found at i:9010004 original size:58 final size:58
Alignment explanation
Indices: 9009761--9010153 Score: 478
Period size: 58 Copynumber: 6.8 Consensus size: 58
9009751 TTATTTATTC
* * * * * *
9009761 AAGATTATCAAGAAAATAAATTTAACAATTTATTTTCTTTTTTACAAA-ATATAATCATTT
1 AAGATTCTCAAGGAAATAAATTCAACAATTTATTTTC---CTTACAAAGTTAGAATCATTT
* * ** * *
9009821 AAGATTCTCAAGAAAATAAATTTAACAATTTATTTTTTTTA-AATGATAGAATCATTT
1 AAGATTCTCAAGGAAATAAATTCAACAATTTATTTTCCTTACAAAGTTAGAATCATTT
* *
9009878 AAGATT-TCCAAGGAAATAAATTCAACAATCTA-TTTCCATTA-TAA---AGAATCATTT
1 AAGATTCT-CAAGGAAATAAATTCAACAATTTATTTTCC-TTACAAAGTTAGAATCATTT
* * **
9009932 AAGATTCTCAAGGAAATAACTTCAACAATTTATTTTCCTTACAAAGTTAGAATTATGC
1 AAGATTCTCAAGGAAATAAATTCAACAATTTATTTTCCTTACAAAGTTAGAATCATTT
* *
9009990 AAGATTCTCAAGGAAATAAATTCAATAATTTATTTTCCTTACAATGTTAGAATCATTT
1 AAGATTCTCAAGGAAATAAATTCAACAATTTATTTTCCTTACAAAGTTAGAATCATTT
* *
9010048 AAGATTCTCAAGGAAATAAATTCAATAAATTATTTTCCTTACAAAGTTAGAATCATTT
1 AAGATTCTCAAGGAAATAAATTCAACAATTTATTTTCCTTACAAAGTTAGAATCATTT
*
9010106 AAGATTCTCAAGGAAATAAATTCAACAATTTATTTTCCTTACGAAGTT
1 AAGATTCTCAAGGAAATAAATTCAACAATTTATTTTCCTTACAAAGTT
9010154 CGAACCAACG
Statistics
Matches: 296, Mismatches: 28, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
54 41 0.14
55 8 0.03
56 6 0.02
57 46 0.16
58 160 0.54
60 35 0.12
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (58 bp):
AAGATTCTCAAGGAAATAAATTCAACAATTTATTTTCCTTACAAAGTTAGAATCATTT
Found at i:9015890 original size:107 final size:108
Alignment explanation
Indices: 9015673--9015894 Score: 401
Period size: 107 Copynumber: 2.1 Consensus size: 108
9015663 ATGTACAGTA
*
9015673 TAAATATGTGTTCCTAACTTTAGTATAATGTAATGTGAGTGATGTATGAATAAAAAAATAAATAG
1 TAAAT-TGTGTTCCTAACTTTAGTATAATGTAATGTGAGTGATGTATGAATAAAAAAATAAAAAG
9015738 AGATAGTGAGTGAAGTTTAGCAAAACTATAGATAGGGGTGTTTG
65 AGATAGTGAGTGAAGTTTAGCAAAACTATAGATAGGGGTGTTTG
* *
9015782 TAAATTGTGTTCCTAACTTTAGTATAATGTAATGTGAGTGATGTATGAGTAAAAAAA-AAAAAGC
1 TAAATTGTGTTCCTAACTTTAGTATAATGTAATGTGAGTGATGTATGAATAAAAAAATAAAAAGA
9015846 GATAGTGAGTGAAGTTTAGCAAAACTATAGATAGGGGTGTTTG
66 GATAGTGAGTGAAGTTTAGCAAAACTATAGATAGGGGTGTTTG
9015889 TAAATT
1 TAAATT
9015895 AGCTGGAGTT
Statistics
Matches: 110, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
107 54 0.49
108 51 0.46
109 5 0.05
ACGTcount: A:0.39, C:0.05, G:0.23, T:0.33
Consensus pattern (108 bp):
TAAATTGTGTTCCTAACTTTAGTATAATGTAATGTGAGTGATGTATGAATAAAAAAATAAAAAGA
GATAGTGAGTGAAGTTTAGCAAAACTATAGATAGGGGTGTTTG
Found at i:9018717 original size:23 final size:23
Alignment explanation
Indices: 9018674--9018723 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 23
9018664 AGATTTATCC
9018674 TTTATTTTTTTATTCGTATGT-A
1 TTTATTTTTTTATTCGTATGTAA
*
9018696 TTTA-TTTTTTATTTGATAATGTAA
1 TTTATTTTTTTATTCG-T-ATGTAA
9018720 TTTA
1 TTTA
9018724 GATTGGTGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 10 0.42
22 5 0.21
23 4 0.17
24 5 0.21
ACGTcount: A:0.24, C:0.02, G:0.08, T:0.66
Consensus pattern (23 bp):
TTTATTTTTTTATTCGTATGTAA
Found at i:9019252 original size:30 final size:31
Alignment explanation
Indices: 9019200--9019257 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
9019190 AACAATGTTC
*
9019200 TTTTTTGCATGTTAATAAAAATAATAATTAA
1 TTTTTTACATGTTAATAAAAATAATAATTAA
**
9019231 TTTTTTACATG-TAATTTAAATAATAAT
1 TTTTTTACATGTTAATAAAAATAATAAT
9019258 ACTATAAGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 14 0.58
31 10 0.42
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.48
Consensus pattern (31 bp):
TTTTTTACATGTTAATAAAAATAATAATTAA
Found at i:9026474 original size:22 final size:22
Alignment explanation
Indices: 9026439--9026520 Score: 101
Period size: 22 Copynumber: 3.7 Consensus size: 22
9026429 TATATGCCTG
9026439 TAGTGCTAAGGCACTTTAGTAT
1 TAGTGCTAAGGCACTTTAGTAT
* * **
9026461 TAGTGCAAATGCACTTCCGTAT
1 TAGTGCTAAGGCACTTTAGTAT
* *
9026483 CAGTGCTAAGGCACTTTAGTAC
1 TAGTGCTAAGGCACTTTAGTAT
*
9026505 CAGTGCTAAGGCACTT
1 TAGTGCTAAGGCACTT
9026521 CTGTGAATTG
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (22 bp):
TAGTGCTAAGGCACTTTAGTAT
Found at i:9026667 original size:13 final size:13
Alignment explanation
Indices: 9026645--9026674 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9026635 TACTCGTGGC
9026645 GAGGCACTTAGTA
1 GAGGCACTTAGTA
*
9026658 GAGGCTCTTAGTA
1 GAGGCACTTAGTA
9026671 GAGG
1 GAGG
9026675 ACTAAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.13, G:0.37, T:0.23
Consensus pattern (13 bp):
GAGGCACTTAGTA
Found at i:9031338 original size:19 final size:18
Alignment explanation
Indices: 9031311--9031347 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
9031301 TCTTATTAAG
9031311 GTATATTTTATTATATTTA
1 GTATATTTTATTAT-TTTA
*
9031330 GTATTTTTTATTATTTTA
1 GTATATTTTATTATTTTA
9031348 TTTAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (18 bp):
GTATATTTTATTATTTTA
Found at i:9033724 original size:35 final size:33
Alignment explanation
Indices: 9033685--9033769 Score: 91
Period size: 35 Copynumber: 2.5 Consensus size: 33
9033675 GTATTTCAGT
9033685 TAATTTTGTT-TATTACCATTTAATATCAGTTATTG
1 TAATTTTGTTATATTACCATTTAATA-C--TTATTG
*
9033720 TAATTTGGTTATCATTTACCATTTAATACTTATTG
1 TAATTTTGTTAT-A-TTACCATTTAATACTTATTG
* *
9033755 TAAGTTTGTTGTATT
1 TAATTTTGTTATATT
9033770 TAAAATTATT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
33 2 0.05
34 1 0.02
35 24 0.56
36 1 0.02
37 2 0.05
38 13 0.30
ACGTcount: A:0.27, C:0.08, G:0.11, T:0.54
Consensus pattern (33 bp):
TAATTTTGTTATATTACCATTTAATACTTATTG
Found at i:9035164 original size:30 final size:29
Alignment explanation
Indices: 9035102--9035164 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
9035092 TACTGCAAAG
* * *
9035102 GGTGTTAGATCGGGAAATATAGTCTGACC
1 GGTGTTAGATCGGGAAATATACTATCACC
*
9035131 GGTGTTAGATCGGTAAATATACTGATCACC
1 GGTGTTAGATCGGGAAATATACT-ATCACC
9035161 GGTG
1 GGTG
9035165 ATTTTTTGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 21 0.72
30 8 0.28
ACGTcount: A:0.27, C:0.14, G:0.30, T:0.29
Consensus pattern (29 bp):
GGTGTTAGATCGGGAAATATACTATCACC
Found at i:9040895 original size:31 final size:31
Alignment explanation
Indices: 9040846--9040908 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
9040836 CGTGGGCACC
*** *
9040846 TAAAAGTATAATGGAGAAAACGTTAGACACT
1 TAAAAGTATAACAAAGAAAACATTAGACACT
*
9040877 TAAAAGTATAACAAAGAAAATATTAGACACT
1 TAAAAGTATAACAAAGAAAACATTAGACACT
9040908 T
1 T
9040909 GTTTTTAACG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.52, C:0.10, G:0.14, T:0.24
Consensus pattern (31 bp):
TAAAAGTATAACAAAGAAAACATTAGACACT
Found at i:9048867 original size:20 final size:20
Alignment explanation
Indices: 9048806--9048868 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
9048796 TTTTATTTTA
9048806 ATTTCATAATT-TTAA-T-C
1 ATTTCATAATTATTAAGTAC
* * *
9048823 -TTTCTTAAATATATATAGTAT
1 ATTTCATAATTAT-TA-AGTAC
9048844 ATTTCATAATTATTAAGTAC
1 ATTTCATAATTATTAAGTAC
9048864 ATTTC
1 ATTTC
9048869 TTTGCAGCCC
Statistics
Matches: 34, Mismatches: 6, Indels: 9
0.69 0.12 0.18
Matches are distributed among these distances:
16 8 0.24
17 1 0.03
18 2 0.06
19 1 0.03
20 10 0.29
21 2 0.06
22 10 0.29
ACGTcount: A:0.37, C:0.10, G:0.03, T:0.51
Consensus pattern (20 bp):
ATTTCATAATTATTAAGTAC
Found at i:9059503 original size:45 final size:45
Alignment explanation
Indices: 9059404--9059507 Score: 120
Period size: 45 Copynumber: 2.3 Consensus size: 45
9059394 ATGCACAGGA
* * *
9059404 AGTGCATCGATGCACCCATTAAAAATGGAAACATCGAATGCAATT
1 AGTGCATCGATGCACCCATTAAAAATGAAAACATCAAAGGCAATT
* **
9059449 AGTGCATCGATGCACCCCCTT-AAAATGAAAACATCAAAGGTGATT
1 AGTGCATCGATGCA-CCCATTAAAAATGAAAACATCAAAGGCAATT
* *
9059494 GGTGTATCGATGCA
1 AGTGCATCGATGCA
9059508 TGGGTAGTGC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
45 45 0.90
46 5 0.10
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (45 bp):
AGTGCATCGATGCACCCATTAAAAATGAAAACATCAAAGGCAATT
Found at i:9060624 original size:2 final size:2
Alignment explanation
Indices: 9060619--9060686 Score: 127
Period size: 2 Copynumber: 34.0 Consensus size: 2
9060609 AGGAAAAAAG
*
9060619 AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9060661 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
9060687 GAAGATGAAT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9060755 original size:2 final size:2
Alignment explanation
Indices: 9060748--9060778 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
9060738 GAACATGTGA
9060748 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9060779 GGATAAGACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9063692 original size:21 final size:21
Alignment explanation
Indices: 9063668--9063718 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
9063658 GTAGTGATAG
*
9063668 TGATAAAAGCAGCGATAATGA
1 TGATAAAAGCAGCAATAATGA
* *
9063689 TGATGACAA-TAGCAATAATGA
1 TGAT-AAAAGCAGCAATAATGA
*
9063710 AGATAAAAG
1 TGATAAAAG
9063719 TGGTTATAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 4
0.72 0.16 0.12
Matches are distributed among these distances:
20 3 0.13
21 17 0.74
22 3 0.13
ACGTcount: A:0.51, C:0.08, G:0.22, T:0.20
Consensus pattern (21 bp):
TGATAAAAGCAGCAATAATGA
Found at i:9067189 original size:2 final size:2
Alignment explanation
Indices: 9067182--9067255 Score: 148
Period size: 2 Copynumber: 37.0 Consensus size: 2
9067172 TTACTTAGTT
9067182 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9067224 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9067256 ATCCAATTAC
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 72 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9075251 original size:24 final size:24
Alignment explanation
Indices: 9075206--9075270 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 24
9075196 CGTTCGTGAA
**
9075206 TGTTCGATTATATGTTTGTTTAGGTT
1 TGTTC-ATT-TATGTTCATTTAGGTT
*
9075232 TGTTCATTTATGTTCATTTATGTT
1 TGTTCATTTATGTTCATTTAGGTT
*
9075256 CGTTCATTTATGTTC
1 TGTTCATTTATGTTC
9075271 GAACAGAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 27 0.77
25 3 0.09
26 5 0.14
ACGTcount: A:0.15, C:0.09, G:0.17, T:0.58
Consensus pattern (24 bp):
TGTTCATTTATGTTCATTTAGGTT
Found at i:9075266 original size:14 final size:14
Alignment explanation
Indices: 9075243--9075271 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9075233 GTTCATTTAT
9075243 GTTCATTTATGTTC
1 GTTCATTTATGTTC
9075257 GTTCATTTATGTTC
1 GTTCATTTATGTTC
9075271 G
1 G
9075272 AACAGAGGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.17, T:0.55
Consensus pattern (14 bp):
GTTCATTTATGTTC
Found at i:9075270 original size:10 final size:10
Alignment explanation
Indices: 9075232--9075256 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
9075222 TGTTTAGGTT
9075232 TGTTCATTTA
1 TGTTCATTTA
9075242 TGTTCATTTA
1 TGTTCATTTA
9075252 TGTTC
1 TGTTC
9075257 GTTCATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.12, G:0.12, T:0.60
Consensus pattern (10 bp):
TGTTCATTTA
Found at i:9075616 original size:20 final size:20
Alignment explanation
Indices: 9075591--9075649 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
9075581 TGTTCGTTCA
9075591 TTTGTGTTCGTTTACATTCG
1 TTTGTGTTCGTTTACATTCG
*
9075611 TTTGTGTTCGTTTACGTTCG
1 TTTGTGTTCGTTTACATTCG
* *
9075631 TTTATGTTCATTTATCATT
1 TTTGTGTTCGTTTA-CATT
9075650 TAAATGAACG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 31 0.91
21 3 0.09
ACGTcount: A:0.12, C:0.14, G:0.17, T:0.58
Consensus pattern (20 bp):
TTTGTGTTCGTTTACATTCG
Found at i:9075645 original size:10 final size:10
Alignment explanation
Indices: 9075548--9075645 Score: 60
Period size: 10 Copynumber: 10.1 Consensus size: 10
9075538 TCTTTTATTG
*
9075548 TGTTCGTTAA
1 TGTTCGTTTA
9075558 TGTTCGTTTA
1 TGTTCGTTTA
**
9075568 TGTTTATTTA
1 TGTTCGTTTA
9075578 T-TAT-G-TT-
1 TGT-TCGTTTA
* * *
9075585 CGTTCATTTG
1 TGTTCGTTTA
9075595 TGTTCGTTTA
1 TGTTCGTTTA
** *
9075605 CATTCGTTTG
1 TGTTCGTTTA
9075615 TGTTCGTTTA
1 TGTTCGTTTA
*
9075625 CGTTCGTTTA
1 TGTTCGTTTA
*
9075635 TGTTCATTTA
1 TGTTCGTTTA
9075645 T
1 T
9075646 CATTTAAATG
Statistics
Matches: 65, Mismatches: 18, Indels: 10
0.70 0.19 0.11
Matches are distributed among these distances:
7 1 0.02
8 3 0.05
9 3 0.05
10 58 0.89
ACGTcount: A:0.13, C:0.11, G:0.17, T:0.58
Consensus pattern (10 bp):
TGTTCGTTTA
Found at i:9076309 original size:5 final size:5
Alignment explanation
Indices: 9076256--9076307 Score: 68
Period size: 5 Copynumber: 10.0 Consensus size: 5
9076246 CACGTATTAC
* *
9076256 CACGA CCACGA CCACGA CACGA CACGA CACGA CACGA CACGA GACGA GACGA
1 CACGA -CACGA -CACGA CACGA CACGA CACGA CACGA CACGA CACGA CACGA
9076308 GATGGACGGT
Statistics
Matches: 45, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
5 34 0.76
6 11 0.24
ACGTcount: A:0.38, C:0.38, G:0.23, T:0.00
Consensus pattern (5 bp):
CACGA
Found at i:9079132 original size:63 final size:64
Alignment explanation
Indices: 9079060--9079209 Score: 198
Period size: 65 Copynumber: 2.3 Consensus size: 64
9079050 GCCAATATCA
* *
9079060 TTCGCTGTGAAGTTGAAATTG-AC-TCTGAAACT-GGGAAGTTGTTTGTTGACAGCCAGCGGCCC
1 TTCGTTGTGAAGTTGAAATTGTACGTCTGAAACTGGGGAA-TT-TTTGTTGACAACCAGCGGCCC
9079122 C
64 C
* * *
9079123 TTCGTTGTGAAGTTGAACTTGTGCTGTCTTAAACTGGGGAATTTTTGTTGACAACCAGCGGCCCC
1 TTCGTTGTGAAGTTGAAATTGTAC-GTCTGAAACTGGGGAATTTTTGTTGACAACCAGCGGCCCC
*
9079188 TTCGTTGTGAAGTTGAACTTGT
1 TTCGTTGTGAAGTTGAAATTGT
9079210 GTTGTCTTGA
Statistics
Matches: 78, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
63 19 0.24
64 1 0.01
65 43 0.55
66 10 0.13
67 5 0.06
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.33
Consensus pattern (64 bp):
TTCGTTGTGAAGTTGAAATTGTACGTCTGAAACTGGGGAATTTTTGTTGACAACCAGCGGCCCC
Found at i:9079181 original size:65 final size:66
Alignment explanation
Indices: 9079087--9079217 Score: 221
Period size: 65 Copynumber: 2.0 Consensus size: 66
9079077 ATTGACTCTG
*
9079087 AAACTGGGAAGTTGTTTGTTGACAGCCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGCTGTCT
1 AAACTGGGAAGTTGTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGCTGTCT
9079152 T
66 T
*
9079153 AAACTGGGGAA-TT-TTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTGTC
1 AAACT-GGGAAGTTGTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGCTGTC
9079216 TT
65 TT
9079218 GAGTCCAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
65 50 0.81
66 7 0.11
67 5 0.08
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.34
Consensus pattern (66 bp):
AAACTGGGAAGTTGTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGCTGTCT
T
Found at i:9079414 original size:235 final size:231
Alignment explanation
Indices: 9079060--9079551 Score: 726
Period size: 235 Copynumber: 2.1 Consensus size: 231
9079050 GCCAATATCA
* * * * *
9079060 TTCGCTGTGAAGTTGAAATTGA-C--TCTGAAACTGGGAAGTTGTTTGTTGACAGCCAGCGGCCC
1 TTCGTTGTGAAGTTGAACTTGAGCTGTCTTAAACTGGGAAGATGTTTGTTGACAACCAGCGGCCC
* * *
9079122 CTTCGTTGTGAAGTTGAACTTGTGCTGTCTTAAACTGGGGAATTTTTGTTGACAACCAGCGGCCC
66 CTTCGTTGTGAAGTTGAACTTGTGCTGTCTGAAACTGGGAAATTTTTGTTAACAACCAGCGGCCC
*
9079187 CTTCGTTGTGAAGTTGAACTTGTGTTGTCTTG-AGTCCAATATCCTTCACTGTGAAGTTGAAATT
131 CTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAAGTCCAATATCCTTCACTATGAAGTTGAAATT
* *
9079251 GGCTCTGAAATTGGGAAGTTGTTTGTTGACAGCCAGCGGCCCT
196 -G----G--ATTGGGAAATTGTTTGTTGACAGCCAGCGGCCCC
*
9079294 TTCGTTGTGAAGTTGAACTTGTGCTGTCTTAAACTGGGAA-AT-TTTGTTGACAACCAGCGGCCC
1 TTCGTTGTGAAGTTGAACTTGAGCTGTCTTAAACTGGGAAGATGTTTGTTGACAACCAGCGGCCC
* *
9079357 CTTCGTTGTGAAGTTGAACTTGTGTTGTCTGATACTGGGAAATTTTTGTTAACAACCAGCGGCCC
66 CTTCGTTGTGAAGTTGAACTTGTGCTGTCTGAAACTGGGAAATTTTTGTTAACAACCAGCGGCCC
* *
9079422 CTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAATTCCAATATCCTTCGCTATGAAGTTGAAATT
131 CTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAAGTCCAATATCCTTCACTATGAAGTTGAAATT
*
9079487 GGATTGGGAAATTGTTTGTTGACAGTCAGCGGCCCC
196 GGATTGGGAAATTGTTTGTTGACAGCCAGCGGCCCC
9079523 TTCGTTGTGAAGTTGAACTTGAGCTGTCT
1 TTCGTTGTGAAGTTGAACTTGAGCTGTCT
9079552 CGAGTGGAAC
Statistics
Matches: 236, Mismatches: 18, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
229 59 0.25
231 1 0.00
234 19 0.08
235 114 0.48
236 30 0.13
237 13 0.06
ACGTcount: A:0.21, C:0.18, G:0.26, T:0.35
Consensus pattern (231 bp):
TTCGTTGTGAAGTTGAACTTGAGCTGTCTTAAACTGGGAAGATGTTTGTTGACAACCAGCGGCCC
CTTCGTTGTGAAGTTGAACTTGTGCTGTCTGAAACTGGGAAATTTTTGTTAACAACCAGCGGCCC
CTTCGTTGTGAAGTTGAACTTGTGTTGTCTTGAAGTCCAATATCCTTCACTATGAAGTTGAAATT
GGATTGGGAAATTGTTTGTTGACAGCCAGCGGCCCC
Found at i:9079417 original size:65 final size:65
Alignment explanation
Indices: 9079254--9079451 Score: 308
Period size: 64 Copynumber: 3.0 Consensus size: 65
9079244 TGAAATTGGC
* * * * *
9079254 TCTGAAATTGGGAAGTTGTTTGTTGACAGCCAGCGGCCCTTTCGTTGTGAAGTTGAACTTGTGCT
1 TCTGAAACTGGGAAATT-TTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTT
9079319 G
65 G
*
9079320 TCTTAAACTGGGAAA-TTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTG
1 TCTGAAACTGGGAAATTTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTG
* *
9079384 TCTGATACTGGGAAATTTTTGTTAACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTG
1 TCTGAAACTGGGAAATTTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTG
9079449 TCT
1 TCT
9079452 TGAATTCCAA
Statistics
Matches: 122, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
64 58 0.48
65 52 0.43
66 12 0.10
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.35
Consensus pattern (65 bp):
TCTGAAACTGGGAAATTTTTGTTGACAACCAGCGGCCCCTTCGTTGTGAAGTTGAACTTGTGTTG
Found at i:9080052 original size:36 final size:36
Alignment explanation
Indices: 9079942--9080059 Score: 100
Period size: 36 Copynumber: 3.3 Consensus size: 36
9079932 AGAGAAACTG
* * *
9079942 TCTCAAGGGAGACAAAGT-TTGTTTCAAGAAAAACTA
1 TCTCAAGCGAGACAAA-TCTTGTTTTAAGAAAAACAA
* * ** **
9079978 TCTCAAGCGAGATAAAATCTTCTAGT--G-AAAACGG
1 TCTCAAGCGAGA-CAAATCTTGTTTTAAGAAAAACAA
9080012 TCTCAAGCGAGACAAATCTTGTTTTAAGAAAAACAA
1 TCTCAAGCGAGACAAATCTTGTTTTAAGAAAAACAA
*
9080048 TCTCAAGTGAGA
1 TCTCAAGCGAGA
9080060 TAATCATCTG
Statistics
Matches: 62, Mismatches: 15, Indels: 10
0.71 0.17 0.11
Matches are distributed among these distances:
33 9 0.15
34 17 0.27
35 2 0.03
36 28 0.45
37 6 0.10
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.25
Consensus pattern (36 bp):
TCTCAAGCGAGACAAATCTTGTTTTAAGAAAAACAA
Found at i:9080898 original size:22 final size:22
Alignment explanation
Indices: 9080873--9080915 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
9080863 CATTTTTGTT
*
9080873 CATTTGATGCTCAAAGGTTTGG
1 CATTGGATGCTCAAAGGTTTGG
9080895 CATTGGATGCTCAAAGGTTTG
1 CATTGGATGCTCAAAGGTTTG
9080916 CTGGGGTAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35
Consensus pattern (22 bp):
CATTGGATGCTCAAAGGTTTGG
Found at i:9081493 original size:13 final size:13
Alignment explanation
Indices: 9081476--9081533 Score: 57
Period size: 13 Copynumber: 4.4 Consensus size: 13
9081466 TTTTTGTCCC
9081476 TTTTTCTT-TTTT
1 TTTTTCTTCTTTT
*
9081488 CTTTTTGTTCTTTT
1 -TTTTTCTTCTTTT
9081502 TTTTTGCTT-TTGTT
1 TTTTT-CTTCTT-TT
*
9081516 TTTTGCTTCTTTT
1 TTTTTCTTCTTTT
9081529 TTTTT
1 TTTTT
9081534 GCCCTTTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
13 23 0.62
14 14 0.38
ACGTcount: A:0.00, C:0.10, G:0.07, T:0.83
Consensus pattern (13 bp):
TTTTTCTTCTTTT
Found at i:9081506 original size:27 final size:27
Alignment explanation
Indices: 9081476--9081535 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
9081466 TTTTTGTCCC
*
9081476 TTTTT-CTTTTTTCTTTTTG-TTCTTTT
1 TTTTTGCTTTTGT-TTTTTGCTTCTTTT
9081502 TTTTTGCTTTTGTTTTTTGCTTCTTTT
1 TTTTTGCTTTTGTTTTTTGCTTCTTTT
9081529 TTTTTGC
1 TTTTTGC
9081536 CCTTTTTATT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
26 11 0.35
27 20 0.65
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.80
Consensus pattern (27 bp):
TTTTTGCTTTTGTTTTTTGCTTCTTTT
Found at i:9083461 original size:5 final size:5
Alignment explanation
Indices: 9083451--9083479 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
9083441 GCAAGTGATG
9083451 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
9083480 GAAAGATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:9084411 original size:106 final size:106
Alignment explanation
Indices: 9084226--9085219 Score: 1679
Period size: 106 Copynumber: 9.4 Consensus size: 106
9084216 CTGTCGTGTT
* *
9084226 TGGAGTCCAATATGCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGAC
1 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
*
9084291 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTC
66 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
* * *
9084332 TGGAGTCAAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTATTGAC
1 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
9084397 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
66 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
*
9084438 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGAC
1 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
9084503 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
66 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
* * * * *
9084544 TAGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAA-ATGTTCGTTGAC
1 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
9084608 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
66 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
* *
9084649 TGGAGTCCAATATCATTCGTTATGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
1 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
* * *
9084714 AACCAGCGGTCCCCTCCTCGTGAAGTTGAACTTACGTTGTC
66 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
*
9084755 TGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
1 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
*
9084820 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTC
66 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
* * *
9084861 TGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGATCTGAAATTGGGAAGTTGTTTGTTGAC
1 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
9084926 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
66 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
* * * * * *
9084967 TAGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTAAAATCGAGAA-ATGTTCGTTGAC
1 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
9085031 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
66 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
* *
9085072 TGGAGTTCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAG-AGATGTTTGTTGAC
1 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
*
9085136 AACCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
66 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
*
9085177 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAGATTGGCTCTGA
1 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGA
9085220 GTAAAACCTG
Statistics
Matches: 836, Mismatches: 50, Indels: 5
0.94 0.06 0.01
Matches are distributed among these distances:
104 1 0.00
105 286 0.34
106 549 0.66
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.33
Consensus pattern (106 bp):
TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
Found at i:9084810 original size:317 final size:318
Alignment explanation
Indices: 9084226--9085219 Score: 1672
Period size: 317 Copynumber: 3.1 Consensus size: 318
9084216 CTGTCGTGTT
* * *
9084226 TGGAGTCCAATATGCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGAC
1 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGAGAAGTTGTTTGTTGAC
* *
9084291 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCAAATATCCTTCGTTGTG
66 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTG
*
9084356 AAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAA
131 AAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAA
9084421 GTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
196 GTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
*
9084486 GGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
261 AGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
* * * *
9084544 TAGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAA-ATGTTCGTTGAC
1 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGAGAAGTTGTTTGTTGAC
* *
9084608 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCATTCGTTATG
66 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTG
* * *
9084673 AAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCCTCCTCGTGAA
131 AAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAA
* *
9084738 GTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTG
196 GTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
*
9084803 AGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTC
261 AGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
* *
9084861 TGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGA-TCTGAAATTGGGAAGTTGTTTGTTGA
1 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATT-GACTCTGAAATTGAGAAGTTGTTTGTTGA
*
9084925 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTAGAGTCCAATATCCTTCGTTGT
65 CAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGT
* * * *
9084990 GAAGTTGAAATTGACTCTAAAATCGAGAA-ATGTTCGTTGACAACCAGCGGTCCCTTCGTCGTGA
130 GAAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGA
*
9085054 AGTTGAACTTGCGTTGTCTGGAGTTCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT
195 AGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATT
* *
9085119 GAG-AGATGTTTGTTGACAACCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
260 GAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
* *
9085177 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAGATTGGCTCTGA
1 TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGA
9085220 GTAAAACCTG
Statistics
Matches: 629, Mismatches: 44, Indels: 8
0.92 0.06 0.01
Matches are distributed among these distances:
315 1 0.00
316 90 0.14
317 391 0.62
318 147 0.23
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.33
Consensus pattern (318 bp):
TGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATTGAGAAGTTGTTTGTTGAC
AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTG
AAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAA
GTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
AGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
Found at i:9085015 original size:423 final size:422
Alignment explanation
Indices: 9084226--9085219 Score: 1801
Period size: 423 Copynumber: 2.4 Consensus size: 422
9084216 CTGTCGTGTT
*
9084226 TGGAGTCCAATATGCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGAC
1 TGGAGTCCAATAT-CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
*
9084291 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCAAATATCCTTCGTTGTG
65 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGTTGTG
*
9084356 AAGTTGAAATTGGCTCTAAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAA
130 AAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAA
* * *
9084421 GTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTG
195 GTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGATCTGAAATTG
9084486 GGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTAGAGTC
260 GGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTAGAGTC
*
9084551 CAATATCCTTCGTTGTGAAGTTGAAATTGACTCTGAAATCGAGAAATGTTCGTTGACAACCAGCG
325 CAATATCCTTCGTTGTGAAGTTGAAATTGACTCTAAAATCGAGAAATGTTCGTTGACAACCAGCG
9084616 GTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
390 GTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
*
9084649 TGGAGTCCAATATCATTCGTTATGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
1 TGGAGTCCAATATC-TTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
* * *
9084714 AACCAGCGGTCCCCTCCTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTG
65 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGTTGTG
*
9084779 AAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAA
130 AAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAA
9084844 GTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGATCTGAAATTG
195 GTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGATCTGAAATTG
9084909 GGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTAGAGTC
260 GGAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTAGAGTC
9084974 CAATATCCTTCGTTGTGAAGTTGAAATTGACTCTAAAATCGAGAAATGTTCGTTGACAACCAGCG
325 CAATATCCTTCGTTGTGAAGTTGAAATTGACTCTAAAATCGAGAAATGTTCGTTGACAACCAGCG
9085039 GTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
390 GTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
* *
9085072 TGGAGTTCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAG-AGATGTTTGTTGAC
1 TGGAGTCCAATAT-CTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGAC
* *
9085136 AACCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTGGAGTCCAATATCCTTCGTTGTG
65 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGTTGTG
*
9085201 AAGTTGAGATTGGCTCTGA
130 AAGTTGAAATTGGCTCTGA
9085220 GTAAAACCTG
Statistics
Matches: 548, Mismatches: 21, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
422 92 0.17
423 455 0.83
424 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.33
Consensus pattern (422 bp):
TGGAGTCCAATATCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACA
ACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGTTGTGA
AGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTATTGACAACCAGCGGTCCCTTCGTCGTGAAG
TTGAACTTACGTTGTCTGGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGATCTGAAATTGG
GAAGTTGTTTGTTGACAACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTAGAGTCC
AATATCCTTCGTTGTGAAGTTGAAATTGACTCTAAAATCGAGAAATGTTCGTTGACAACCAGCGG
TCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC
Found at i:9085839 original size:13 final size:13
Alignment explanation
Indices: 9085821--9085865 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 13
9085811 CAATCAGAAT
*
9085821 AAAAAGGGCAAAA
1 AAAAAGAGCAAAA
9085834 AAAAAGAAGCAAAA
1 AAAAAG-AGCAAAA
9085848 AACAAA-AGCAAAA
1 AA-AAAGAGCAAAA
9085861 AAAAA
1 AAAAA
9085866 AAGAACAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 3 0.10
13 15 0.52
14 8 0.28
15 3 0.10
ACGTcount: A:0.78, C:0.09, G:0.13, T:0.00
Consensus pattern (13 bp):
AAAAAGAGCAAAA
Found at i:9085854 original size:16 final size:16
Alignment explanation
Indices: 9085830--9085886 Score: 68
Period size: 15 Copynumber: 3.8 Consensus size: 16
9085820 TAAAAAGGGC
9085830 AAAAAAAAAGAAGC--
1 AAAAAAAAAGAAGCAA
*
9085844 AAAAAACAA-AAGCAA
1 AAAAAAAAAGAAGCAA
9085859 AAAAAAAAAGAA-CAA
1 AAAAAAAAAGAAGCAA
9085874 AAAGAAAAAAGAA
1 AAA-AAAAAAGAA
9085887 AAAGGGACAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
13 4 0.11
14 8 0.22
15 14 0.38
16 11 0.30
ACGTcount: A:0.82, C:0.07, G:0.11, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAGAAGCAA
Found at i:9085867 original size:13 final size:13
Alignment explanation
Indices: 9085828--9085889 Score: 72
Period size: 13 Copynumber: 4.5 Consensus size: 13
9085818 AATAAAAAGG
9085828 GCAAAAAAAAAGAA
1 GCAAAAAAAAA-AA
*
9085842 GCAAAAAACAAAA
1 GCAAAAAAAAAAA
9085855 GCAAAAAAAAAAA
1 GCAAAAAAAAAAA
9085868 GAACAAAAAGAAAAAA
1 G--CAAAAA-AAAAAA
9085884 G-AAAAA
1 GCAAAAA
9085890 GGGACAAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
13 20 0.47
14 10 0.23
15 6 0.14
16 7 0.16
ACGTcount: A:0.81, C:0.08, G:0.11, T:0.00
Consensus pattern (13 bp):
GCAAAAAAAAAAA
Found at i:9085872 original size:21 final size:22
Alignment explanation
Indices: 9085829--9085900 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
9085819 ATAAAAAGGG
*
9085829 CAAAAA-AAAAGAAGCAAAA-AA
1 CAAAAAGAAAA-AAGAAAAAGAA
9085850 C-AAAAGCAAAAAA-AAAAAGAA
1 CAAAAAG-AAAAAAGAAAAAGAA
*
9085871 CAAAAAGAAAAAAGAAAAAGGGA
1 CAAAAAGAAAAAAGAAAAA-GAA
9085894 CAAAAAG
1 CAAAAAG
9085901 CACATGCAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
20 8 0.19
21 12 0.28
22 14 0.33
23 9 0.21
ACGTcount: A:0.78, C:0.08, G:0.14, T:0.00
Consensus pattern (22 bp):
CAAAAAGAAAAAAGAAAAAGAA
Found at i:9085874 original size:28 final size:29
Alignment explanation
Indices: 9085830--9085889 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
9085820 TAAAAAGGGC
*
9085830 AAAAAAAAAGAAGCAAAAA-ACAAAAGCAA
1 AAAAAAAAAGAAGCAAAAAGAAAAAAG-AA
9085859 AAAAAAAAAGAA-CAAAAAGAAAAAAGAA
1 AAAAAAAAAGAAGCAAAAAGAAAAAAGAA
9085887 AAA
1 AAA
9085890 GGGACAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 11 0.38
29 18 0.62
ACGTcount: A:0.83, C:0.07, G:0.10, T:0.00
Consensus pattern (29 bp):
AAAAAAAAAGAAGCAAAAAGAAAAAAGAA
Found at i:9086476 original size:22 final size:22
Alignment explanation
Indices: 9086451--9086493 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
9086441 GCTACCCCAA
*
9086451 CAAACCTTTGAGCATCCAATGC
1 CAAACCTTTGAGCATCAAATGC
9086473 CAAACCTTTGAGCATCAAATG
1 CAAACCTTTGAGCATCAAATG
9086494 AACAAAAATG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (22 bp):
CAAACCTTTGAGCATCAAATGC
Found at i:9087354 original size:36 final size:37
Alignment explanation
Indices: 9087307--9087441 Score: 109
Period size: 36 Copynumber: 3.8 Consensus size: 37
9087297 CAGATGATTA
* *
9087307 TCTCACTTGAGATTGTTTTTCTTAAAACAAGA-TTTG
1 TCTCGCTTGAGATAGTTTTTCTTAAAACAAGACTTTG
** ** * * *
9087343 TCTCGCTTGAGACCG-TTTTC--ACTAGAAGATTTTA
1 TCTCGCTTGAGATAGTTTTTCTTAAAACAAGACTTTG
*
9087377 TCTCGCTTGAGATAGTTTTTCTTGAAACAA-ACTTTG
1 TCTCGCTTGAGATAGTTTTTCTTAAAACAAGACTTTG
* * * *
9087413 TCTCCCTTGAGACAGTTTCTCTTGAAACA
1 TCTCGCTTGAGATAGTTTTTCTTAAAACA
9087442 TCTACTTTGA
Statistics
Matches: 77, Mismatches: 18, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
33 6 0.08
34 16 0.21
35 10 0.13
36 42 0.55
37 3 0.04
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (37 bp):
TCTCGCTTGAGATAGTTTTTCTTAAAACAAGACTTTG
Found at i:9087571 original size:36 final size:36
Alignment explanation
Indices: 9087496--9087573 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 36
9087486 GTTTTCCTTA
* *
9087496 AAACAAATTTTGTCTCCCTTGAGACAGTTTCTGTTG
1 AAACAAATTTTGTCTCCCATGAGACAGTTTCTGTCG
* *
9087532 AAACAAATTTTGTCTCCCATGGGGCAGTTTC-GCTCG
1 AAACAAATTTTGTCTCCCATGAGACAGTTTCTG-TCG
9087568 AAACAA
1 AAACAA
9087574 CACATTGTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
35 1 0.03
36 36 0.97
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (36 bp):
AAACAAATTTTGTCTCCCATGAGACAGTTTCTGTCG
Found at i:9087996 original size:65 final size:65
Alignment explanation
Indices: 9087915--9088137 Score: 319
Period size: 64 Copynumber: 3.5 Consensus size: 65
9087905 TTGGAATTCA
* *
9087915 AGACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTTAACAAAAATTTCCCAGTATC
1 AGACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAACAAAAATTTCCCAGTTTC
*
9087980 AGACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAAC-AAAATTTCCCAGTTTA
1 AGACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAACAAAAATTTCCCAGTTTC
* * * *
9088044 AGACAGCACAAGTTCAACTTCACAACGAAGGGGCCGCTGGCTGTCAACAAACAACTTCCCAATTT
1 AGACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAACAAA-AATTTCCCAGTTT
9088109 C
65 C
* * *
9088110 AG--AGC-CAATTTCAACTTCACAGCGAAGG
1 AGACAACACAAGTTCAACTTCACAACGAAGG
9088138 ATATTGGACT
Statistics
Matches: 146, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
63 21 0.14
64 63 0.43
65 49 0.34
66 13 0.09
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (65 bp):
AGACAACACAAGTTCAACTTCACAACGAAGGGGCCGCTGGTTGTCAACAAAAATTTCCCAGTTTC
Done.