Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007984.1 Hibiscus syriacus cultivar Beakdansim tig00110429_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12923621
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 5 of 65
Found at i:776129 original size:23 final size:22
Alignment explanation
Indices: 776071--776146 Score: 79
Period size: 22 Copynumber: 3.5 Consensus size: 22
776061 AACAATACTC
* *
776071 TTCACGAAAAA-GTTATGTTCTT
1 TTCATGAAAAATGTTACG-TCTT
776093 TT-ATGAAAAATGTTTA-GTCTT
1 TTCATGAAAAATG-TTACGTCTT
776114 TTCATGAAAAACTGTTACGTCTT
1 TTCATGAAAAA-TGTTACGTCTT
776137 TTCAT-AAAAA
1 TTCATGAAAAA
776147 GAGTTAAGTC
Statistics
Matches: 48, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
21 13 0.27
22 20 0.42
23 15 0.31
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.41
Consensus pattern (22 bp):
TTCATGAAAAATGTTACGTCTT
Found at i:783096 original size:233 final size:233
Alignment explanation
Indices: 782689--783154 Score: 887
Period size: 233 Copynumber: 2.0 Consensus size: 233
782679 TTCTAAAATT
*
782689 AGATTCGAATGAAATTTATAAAGTGATTTTAAAGTATGATCCGCATTTTTAATGATGGAATATTT
1 AGATTCGAATGAAATTTATAAAGTGATTTTAAAGTATGATCCGCATTTTTAATGATGAAATATTT
*
782754 CTTTAATGAATTCAGAAATGTTTTCTGAATTATTTTAGGATATGAACCGCCCAAGTTATGATTTT
66 CTTTAATGAATTCAAAAATGTTTTCTGAATTATTTTAGGATATGAACCGCCCAAGTTATGATTTT
*
782819 TATGATAATGATTGAAAAATAATTCTGAATTGGAATGTTGATTTATAGATGAATATGATATAATC
131 TATGATAATGATTGAAAAATAATTCTGAATTGGAATGTTGATTTATAGATGAAAATGATATAATC
*
782884 TTAAAGCTCATTGTATGTTGTATTGAGAGTCGTATGTA
196 TTAAAGCTCATTGTATGTTGTATTGAGAGCCGTATGTA
782922 AGATTCGAATGAAATTTATAAAGTGATTTTAAAGTATGATCCGCATTTTTAATGATGAAATATTT
1 AGATTCGAATGAAATTTATAAAGTGATTTTAAAGTATGATCCGCATTTTTAATGATGAAATATTT
*
782987 CTTTAATGAATTCAAAAATGTTTTCTGAATTATTTTAGGATATGAACTGCCCAAGTTATGATTTT
66 CTTTAATGAATTCAAAAATGTTTTCTGAATTATTTTAGGATATGAACCGCCCAAGTTATGATTTT
783052 TATGATAATGATTGAAAAATAATTCTGAATTGGAATGTTGATTTATAGATGAAAATGATATAATC
131 TATGATAATGATTGAAAAATAATTCTGAATTGGAATGTTGATTTATAGATGAAAATGATATAATC
783117 TTAAAGCTCATTGTATGTTGTATTGAGAGCCGTATGTA
196 TTAAAGCTCATTGTATGTTGTATTGAGAGCCGTATGTA
783155 CACTTGGCAT
Statistics
Matches: 228, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
233 228 1.00
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.40
Consensus pattern (233 bp):
AGATTCGAATGAAATTTATAAAGTGATTTTAAAGTATGATCCGCATTTTTAATGATGAAATATTT
CTTTAATGAATTCAAAAATGTTTTCTGAATTATTTTAGGATATGAACCGCCCAAGTTATGATTTT
TATGATAATGATTGAAAAATAATTCTGAATTGGAATGTTGATTTATAGATGAAAATGATATAATC
TTAAAGCTCATTGTATGTTGTATTGAGAGCCGTATGTA
Found at i:785206 original size:25 final size:25
Alignment explanation
Indices: 785177--785241 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
785167 TTGATGGTTT
*
785177 AGAAATTTTTGGATGTGTTTCTTGA
1 AGAAATTTTTGGATGTGTTTCCTGA
785202 AGAAATTTTTGGATGTGTTTCCTGA
1 AGAAATTTTTGGATGTGTTTCCTGA
785227 AGAAATTTCTTGGAT
1 AGAAATTT-TTGGAT
785242 TATCTCTTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 32 0.84
26 6 0.16
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.45
Consensus pattern (25 bp):
AGAAATTTTTGGATGTGTTTCCTGA
Found at i:789280 original size:28 final size:28
Alignment explanation
Indices: 789228--789282 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
789218 AGTGTTGTAT
*
789228 CATTTATGCCATTGAACTTTCATTTTTA
1 CATTTATGCCATTGAACTTACATTTTTA
** *
789256 CATTTATGGTATTGAACTTAGATTTTT
1 CATTTATGCCATTGAACTTACATTTTT
789283 GTTTCAATTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.25, C:0.13, G:0.11, T:0.51
Consensus pattern (28 bp):
CATTTATGCCATTGAACTTACATTTTTA
Found at i:789620 original size:17 final size:17
Alignment explanation
Indices: 789600--789640 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
789590 AAAATTTTAA
* *
789600 TAGTATTTTTATTTTTT
1 TAGTATTTTAATTGTTT
*
789617 TAGTAATTTAATTGTTT
1 TAGTATTTTAATTGTTT
789634 TAGTATT
1 TAGTATT
789641 AATATATTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.10, T:0.66
Consensus pattern (17 bp):
TAGTATTTTAATTGTTT
Found at i:791625 original size:10 final size:10
Alignment explanation
Indices: 791580--791632 Score: 54
Period size: 10 Copynumber: 5.1 Consensus size: 10
791570 AAAAGAAAAT
791580 AATAATATAA
1 AATAATATAA
791590 TAATAATGAATAA
1 -AATAAT--ATAA
* *
791603 AAAAACA-AA
1 AATAATATAA
791612 AATAATATAA
1 AATAATATAA
791622 AATAATATAA
1 AATAATATAA
791632 A
1 A
791633 GTTATAAAGT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
9 7 0.20
10 14 0.40
11 6 0.17
12 4 0.11
13 4 0.11
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (10 bp):
AATAATATAA
Found at i:791828 original size:24 final size:22
Alignment explanation
Indices: 791801--791871 Score: 56
Period size: 23 Copynumber: 3.1 Consensus size: 22
791791 ATATTAGACT
*
791801 TATAAGTAAAATATTAAATAAATA
1 TATAAGTAAAATAAT-AATAAA-A
*
791825 TATATA-TATAATAATAATAAAA
1 TATA-AGTAAAATAATAATAAAA
*
791847 TAT-AGTAAAAAAATAAATGAAAA
1 TATAAGTAAAATAAT-AAT-AAAA
791870 TA
1 TA
791872 ATTATATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
20 1 0.03
21 7 0.18
22 7 0.18
23 12 0.31
24 11 0.28
25 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (22 bp):
TATAAGTAAAATAATAATAAAA
Found at i:791922 original size:18 final size:17
Alignment explanation
Indices: 791901--791943 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
791891 ACATATACAT
791901 ATAATAATAATAACATGA
1 ATAATAATAATAA-ATGA
*
791919 ATAATAAAAATAAATGA
1 ATAATAATAATAAATGA
791936 ATAA-AATA
1 ATAATAATA
791944 TTCATATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (17 bp):
ATAATAATAATAAATGA
Found at i:793157 original size:105 final size:106
Alignment explanation
Indices: 792943--793398 Score: 666
Period size: 105 Copynumber: 4.3 Consensus size: 106
792933 CATTGTTCCA
* * * ** *
792943 AGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGACAAC
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
* *
793008 CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
66 CAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCG
* * *
793049 AGTCCAATATCCTTCGTCGTGAAGTTGAAATTGGCTCTGAGATTGGGAAGTT-TTTGTTGACAAG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
* * *
793113 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCATTGTCTGG
66 CAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCG
*
793154 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT-TTGACAAG
1 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
*
793218 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT-G
66 CAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCG
*
793258 AAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 -AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAA
* *
793323 CCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCG
65 CCAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCG
* *
793365 AGTGCCACGATATCCTCCGTTGTGGAGTTGAAAT
1 AGT-CCA--ATATCCTTCGTTGTGAAGTTGAAAT
793399 CGCGGATGGC
Statistics
Matches: 321, Mismatches: 22, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
104 1 0.00
105 198 0.62
106 95 0.30
107 4 0.01
109 23 0.07
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (106 bp):
AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTGTTGACAAC
CAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCG
Found at i:793295 original size:210 final size:212
Alignment explanation
Indices: 792943--793398 Score: 675
Period size: 211 Copynumber: 2.1 Consensus size: 212
792933 CATTGTTCCA
* *
792943 AGTCCAATATCCTCCGTCGTGAAGTTGAAATTGGCTCTGGAACCGGGAAATTGTTTGTTGACAAC
1 AGTCCAATATCCTCCGTTGTGAAGTTGAAATTGGCTCTGAAACCGGGAAATTGTTTGTTGACAAC
* *
793008 CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGTCGTGAAG
66 CAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAGTCCAATATCCTTCGTCGTGAAG
* * * *
793073 TTGAAATTGGCTCTGAGATTGGGAAGTT-TTTGTTGACAAGCAGCGGTCCCTTCGTCGTGAAGTT
131 TTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTCGTGAAGTT
*
793137 GAACTTGCATTGTCTGG
196 GAACTTGCATTGTCTCG
* ** * *
793154 AGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTT-TTGACAAG
1 AGTCCAATATCCTCCGTTGTGAAGTTGAAATTGGCTCTGAAACCGGGAAATTGTTTGTTGACAAC
* *
793218 CAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT-GAAGTCCAATATCCTTCGTTGTGAA
66 CAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCG-AGTCCAATATCCTTCGTCGTGAA
*
793282 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGTGAAGT
130 GTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTCGTGAAGT
**
793347 TGAACTTGTGTTGTCTCG
195 TGAACTTGCATTGTCTCG
*
793365 AGTGCCACGATATCCTCCGTTGTGGAGTTGAAAT
1 AGT-CCA--ATATCCTCCGTTGTGAAGTTGAAAT
793399 CGCGGATGGC
Statistics
Matches: 219, Mismatches: 21, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
209 1 0.00
210 92 0.42
211 100 0.46
212 3 0.01
214 23 0.11
ACGTcount: A:0.21, C:0.19, G:0.26, T:0.34
Consensus pattern (212 bp):
AGTCCAATATCCTCCGTTGTGAAGTTGAAATTGGCTCTGAAACCGGGAAATTGTTTGTTGACAAC
CAGCCGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTCGAGTCCAATATCCTTCGTCGTGAAG
TTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTCGTGAAGTT
GAACTTGCATTGTCTCG
Found at i:794134 original size:67 final size:65
Alignment explanation
Indices: 794001--794454 Score: 284
Period size: 65 Copynumber: 6.7 Consensus size: 65
793991 AAGATATCTG
* * * **
794001 TTGTTTCATGAGAAACGGTCTCAAGGGAAACAAAATTATGTTTTAAGGGAAATAAATTTGAAGAT
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT-TGTTTTAAGGGAAATAAATTCAAAGA-
794066 TT
64 TT
* * *
794068 TGTGTTTCAAGAGTAATTGTCTCAAGGGAGACAAAATTTGTTTTAGGGGAAATAAATTCAAAGAT
1 T-TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGAT
794133 T
65 T
* ** * * *
794134 TTGTTTCAAGGGAAACTGTCTCAAGATAGACGAAATTTGTTTTAAGAGAAACTGTCTCAAGAGAG
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAA-----T--A-A-AT
* *
794199 ACAAA-ACT
57 TCAAAGATT
* * * * * * * * * * *
794207 TAGTTCCAAAAGCAACTGTCTCAAGGGAGACGAAATTTGTTTCAAAGAAAACATATTCAAATATT
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGATT
* * * * * *
794272 TTGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAACTGTCTCAAGAGAG
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAA-----T--A-A-AT
*
794337 ACAAA-ATT
57 TCAAAGATT
* * * * * * *** *
794345 TTGTTTCAAGGGAAACTATCTCAAGAGAGACGAAATTTATTTCAAGGGAAATGTTTTCAATG-TT
1 TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGATT
*
794409 TATGTTTCAAGAGAAATTGTCTCAAGGGAGACAAAATTTGTTTTAA
1 T-TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAA
794455 AAAAGCAATC
Statistics
Matches: 299, Mismatches: 66, Indels: 46
0.73 0.16 0.11
Matches are distributed among these distances:
64 11 0.04
65 121 0.40
66 4 0.01
67 24 0.08
68 32 0.11
70 1 0.00
72 2 0.01
73 94 0.31
74 10 0.03
ACGTcount: A:0.38, C:0.11, G:0.20, T:0.31
Consensus pattern (65 bp):
TTGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTGTTTTAAGGGAAATAAATTCAAAGATT
Found at i:794185 original size:36 final size:36
Alignment explanation
Indices: 794133--794395 Score: 254
Period size: 36 Copynumber: 7.4 Consensus size: 36
794123 ATTCAAAGAT
* *
794133 TTTGTTTCAAGGGAAACTGTCTCAAGATAGACGAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* *
794169 TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* * ** * * *
794205 CTTAGTTCCAAAAGCAACTGTCTCAAGGGAGACGAAA
1 -TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* * * * *
794242 TTTGTTTCAAAGAAAACATAT-TC-----A-A-ATAT
1 TTTGTTTCAAGGGAAAC-TGTCTCAAGAGAGACAAAA
*
794271 TTTGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
*
794307 TTTATTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
* *
794343 TTTTGTTTCAAGGGAAACTATCTCAAGAGAGACGAAA
1 -TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
*
794380 TTTATTTCAAGGGAAA
1 TTTGTTTCAAGGGAAA
794396 TGTTTTCAAT
Statistics
Matches: 184, Mismatches: 32, Indels: 22
0.77 0.13 0.09
Matches are distributed among these distances:
28 2 0.01
29 17 0.09
30 1 0.01
31 1 0.01
34 1 0.01
35 1 0.01
36 97 0.53
37 64 0.35
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (36 bp):
TTTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
Found at i:794265 original size:138 final size:138
Alignment explanation
Indices: 794085--794454 Score: 472
Period size: 138 Copynumber: 2.7 Consensus size: 138
794075 CAAGAGTAAT
* * * * *
794085 TGTCTCAAGGGAGACAAAATTTGTTTTAGGGGAAATAAATTCAAAGATTTTGTTTCAAGGGAAAC
1 TGTCTCAAGGGAGACGAAATTTGTTTCAAGGGAAATATATTCAAAGATTTTGTTTCAAGGGAAAT
* *
794150 TGTCTCAAGATAGACGAAATTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCA
66 TGTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCA
*
794215 AAAGCAAC
131 AAAGAAAC
* * * *
794223 TGTCTCAAGGGAGACGAAATTTGTTTCAAAGAAAACATATTCAAATATTTTGTTTCAAGGGAAAT
1 TGTCTCAAGGGAGACGAAATTTGTTTCAAGGGAAATATATTCAAAGATTTTGTTTCAAGGGAAAT
* * * * * *
794288 TGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTTGTTTCA
66 TGTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCA
**
794353 AGGGAAAC
131 AAAGAAAC
* * * * * * *
794361 TATCTCAAGAGAGACGAAATTTATTTCAAGGGAAATGTTTTCAATG-TTTATGTTTCAAGAGAAA
1 TGTCTCAAGGGAGACGAAATTTGTTTCAAGGGAAATATATTCAAAGATTT-TGTTTCAAGGGAAA
*
794425 TTGTCTCAAGGGAGACAAAATTTGTTTTAA
65 TTGTCTCAAGAGAGACAAAATTTGTTTTAA
794455 AAAAGCAATC
Statistics
Matches: 197, Mismatches: 34, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
137 3 0.02
138 194 0.98
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (138 bp):
TGTCTCAAGGGAGACGAAATTTGTTTCAAGGGAAATATATTCAAAGATTTTGTTTCAAGGGAAAT
TGTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCA
AAAGAAAC
Found at i:794302 original size:102 final size:102
Alignment explanation
Indices: 794169--794353 Score: 264
Period size: 102 Copynumber: 1.8 Consensus size: 102
794159 ATAGACGAAA
* * *
794169 TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAACTTAGTTCCAAAAGCAACTGTCTCAAGGG
1 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTA-TTCCAAAAGAAACTGTCTCAAGAG
*
794234 AGACGAAA-TTTGTTTCAAAGAAAACATATTCAAATAT
65 AGACAAAATTTTGTTTCAAAGAAAACATATTCAAATAT
* * * * **
794271 TTTGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAATTTATTTCAAGGGAAACTGTCTCAAGAGA
1 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTATTCCAAAAGAAACTGTCTCAAGAGA
794336 GACAAAATTTTGTTTCAA
66 GACAAAATTTTGTTTCAA
794354 GGGAAACTAT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
101 26 0.36
102 46 0.64
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (102 bp):
TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTTATTCCAAAAGAAACTGTCTCAAGAGA
GACAAAATTTTGTTTCAAAGAAAACATATTCAAATAT
Found at i:795278 original size:22 final size:22
Alignment explanation
Indices: 795252--795306 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
795242 TTGTGTTTGG
795252 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
795274 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
795296 TCAAATGTTTG
1 TCAAAGGTTTG
795307 ATGGGATAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.38
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:796006 original size:24 final size:22
Alignment explanation
Indices: 795964--796030 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 22
795954 TGTTTTTTCC
795964 TTTTTTC-CTTTTTTCCTTTTGT
1 TTTTTTCTCTTTTTT-CTTTTGT
795986 TATTGTTTCTCTTTTTTC-TTTGT
1 T-TT-TTTCTCTTTTTTCTTTTGT
*
796009 TTTTTTTTGCTTCTTTTCTTTT
1 TTTTTTCT-CTT-TTTTCTTTT
796031 TTCTTCTTGA
Statistics
Matches: 38, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
21 4 0.11
22 6 0.16
23 13 0.34
24 8 0.21
25 7 0.18
ACGTcount: A:0.01, C:0.15, G:0.06, T:0.78
Consensus pattern (22 bp):
TTTTTTCTCTTTTTTCTTTTGT
Found at i:796034 original size:7 final size:7
Alignment explanation
Indices: 795939--796035 Score: 63
Period size: 8 Copynumber: 12.9 Consensus size: 7
795929 TTTGTTCCTC
795939 TTTCTTT
1 TTTCTTT
*
795946 TTTATTCT
1 TTTCTT-T
*
795954 TGT-TTT
1 TTTCTTT
*
795960 TTCCTTT
1 TTTCTTT
795967 TTTCCTTT
1 TTT-CTTT
795975 TTTCCTTT
1 TTT-CTTT
*
795983 TGTTATTGT
1 T-TTCTT-T
795992 TTCTCTTT
1 TT-TCTTT
796000 TTTCTTT
1 TTTCTTT
796007 GTTT-TTT
1 -TTTCTTT
796014 TTTGCTTCT
1 TTT-CTT-T
796023 TTTCTTT
1 TTTCTTT
796030 TTTCTT
1 TTTCTT
796036 CTTGATTGGA
Statistics
Matches: 73, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
6 5 0.07
7 27 0.37
8 30 0.41
9 11 0.15
ACGTcount: A:0.02, C:0.15, G:0.05, T:0.77
Consensus pattern (7 bp):
TTTCTTT
Found at i:799427 original size:10 final size:10
Alignment explanation
Indices: 799385--799434 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
799375 AAAAGAAAAT
799385 AATAATATAA
1 AATAATATAA
799395 TAATGAATA-AA
1 -AAT-AATATAA
*
799406 AA-AACA-AA
1 AATAATATAA
799414 AATAATATAA
1 AATAATATAA
799424 AATAATATAA
1 AATAATATAA
799434 A
1 A
799435 GTTATAAAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
8 7 0.21
9 3 0.09
10 15 0.44
11 5 0.15
12 4 0.12
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.24
Consensus pattern (10 bp):
AATAATATAA
Found at i:799726 original size:18 final size:17
Alignment explanation
Indices: 799705--799747 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
799695 ACATATACAT
799705 ATAATAATAATAACATGA
1 ATAATAATAATAA-ATGA
*
799723 ATAATAAAAATAAATGA
1 ATAATAATAATAAATGA
799740 ATAA-AATA
1 ATAATAATA
799748 TTCATATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.67, C:0.02, G:0.05, T:0.26
Consensus pattern (17 bp):
ATAATAATAATAAATGA
Found at i:805454 original size:22 final size:24
Alignment explanation
Indices: 805418--805467 Score: 86
Period size: 23 Copynumber: 2.2 Consensus size: 24
805408 ATTTGATAAA
805418 TAAAATTTTTGAAAA-TATTTTTT
1 TAAAATTTTTGAAAATTATTTTTT
805441 TAAAATTTTT-AAAATTATTTTTT
1 TAAAATTTTTGAAAATTATTTTTT
805464 TAAA
1 TAAA
805468 GCATCAAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (24 bp):
TAAAATTTTTGAAAATTATTTTTT
Found at i:806925 original size:27 final size:27
Alignment explanation
Indices: 806895--806964 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
806885 ATACCAACTC
806895 AAGTTTCTCGTTTGCTGCTTTCAGGGG
1 AAGTTTCTCGTTTGCTGCTTTCAGGGG
*
806922 AAGTTTCTCGTTTGCTGCTTTCGGGGG
1 AAGTTTCTCGTTTGCTGCTTTCAGGGG
806949 AAGTTTCTCGTTTGCT
1 AAGTTTCTCGTTTGCT
806965 TTGGGCTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.10, C:0.19, G:0.29, T:0.43
Consensus pattern (27 bp):
AAGTTTCTCGTTTGCTGCTTTCAGGGG
Found at i:808269 original size:27 final size:27
Alignment explanation
Indices: 808239--808308 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
808229 ATACCAACTC
808239 AAGTTTCTCGTTTGCTGCTTTCAGGGG
1 AAGTTTCTCGTTTGCTGCTTTCAGGGG
*
808266 AAGTTTCTCGTTTGCTGCTTTCGGGGG
1 AAGTTTCTCGTTTGCTGCTTTCAGGGG
808293 AAGTTTCTCGTTTGCT
1 AAGTTTCTCGTTTGCT
808309 TTGGGCTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.10, C:0.19, G:0.29, T:0.43
Consensus pattern (27 bp):
AAGTTTCTCGTTTGCTGCTTTCAGGGG
Found at i:809610 original size:27 final size:27
Alignment explanation
Indices: 809580--809649 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
809570 ATACCAACTC
809580 AAGTTTCTCGTTTGCTGCTTTCAGGGG
1 AAGTTTCTCGTTTGCTGCTTTCAGGGG
*
809607 AAGTTTCTCGTTTGCTGCTTTCGGGGG
1 AAGTTTCTCGTTTGCTGCTTTCAGGGG
809634 AAGTTTCTCGTTTGCT
1 AAGTTTCTCGTTTGCT
809650 TTGGGCTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.10, C:0.19, G:0.29, T:0.43
Consensus pattern (27 bp):
AAGTTTCTCGTTTGCTGCTTTCAGGGG
Found at i:814564 original size:10 final size:10
Alignment explanation
Indices: 814549--814599 Score: 52
Period size: 9 Copynumber: 5.0 Consensus size: 10
814539 AGTAATAGAG
814549 GAAAAAGAAA
1 GAAAAAGAAA
814559 GAAAAAGAAGAA
1 GAAAAAG-A-AA
814571 GAAAAGAGAAA
1 GAAAA-AGAAA
*
814582 -AAAAATAAA
1 GAAAAAGAAA
814591 G-AAAAGAAA
1 GAAAAAGAAA
814600 TTAAAAGTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
9 11 0.31
10 11 0.31
11 3 0.09
12 8 0.23
13 2 0.06
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (10 bp):
GAAAAAGAAA
Found at i:814592 original size:23 final size:22
Alignment explanation
Indices: 814549--814593 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
814539 AGTAATAGAG
*
814549 GAAAAAGAAAGAAAAAGAAGAA
1 GAAAAAGAAAGAAAAAAAAGAA
814571 GAAAAGAGAAA-AAAAATAAAGAA
1 GAAAA-AGAAAGAAAAA-AAAGAA
814594 AAGAAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (22 bp):
GAAAAAGAAAGAAAAAAAAGAA
Found at i:815309 original size:2 final size:2
Alignment explanation
Indices: 815304--815348 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
815294 ATATAAAGAA
815304 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
815346 AT A
1 AT A
815349 ATGCATAAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:815450 original size:3 final size:3
Alignment explanation
Indices: 815425--815485 Score: 54
Period size: 3 Copynumber: 19.7 Consensus size: 3
815415 AAATTTACAA
* *
815425 AAT AAT AAGT ATAT AAC ATAT AAT AAT AAT AAA AAT -AT ACA- AAT AAT
1 AAT AAT AA-T A-AT AAT A-AT AAT AAT AAT AAT AAT AAT A-AT AAT AAT
815472 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
815486 AGGCAAAAGA
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
2 3 0.06
3 37 0.77
4 7 0.15
5 1 0.02
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:816128 original size:37 final size:37
Alignment explanation
Indices: 816035--816132 Score: 117
Period size: 37 Copynumber: 2.6 Consensus size: 37
816025 GTGCTTGTGG
* * * *
816035 ATCCTATCT-TTAGGAGTTTAAATAATAGTAGAACTCT
1 ATCCTAT-TATTAGGAGTTTGAATCATAGCAAAACTCT
* *
816072 ATCCTATTTTTAGGAGTTTGAATCATAGCAAAATTCT
1 ATCCTATTATTAGGAGTTTGAATCATAGCAAAACTCT
*
816109 ATCTTATTATTAGGAGTTTGAATC
1 ATCCTATTATTAGGAGTTTGAATC
816133 CTAGTAGGAT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
36 1 0.02
37 52 0.98
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.41
Consensus pattern (37 bp):
ATCCTATTATTAGGAGTTTGAATCATAGCAAAACTCT
Found at i:816882 original size:165 final size:165
Alignment explanation
Indices: 816645--817464 Score: 1202
Period size: 165 Copynumber: 5.0 Consensus size: 165
816635 GTTATGCAGT
816645 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
* * * *
816710 TCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGGAGCTGATTGTAATCAAACTCGAAGGTCTT
66 TCGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTT
*
816775 TGGCAGATAGCCCTTCTCGACTTATGCTATGCTGC
131 TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC
* * *
816810 AAATGATGTGCCTTGTAGCTGAGCGTAGTCGAACTCAAATGTATTTGGTTGGCAGATAACCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
*
816875 TCGACTTAAGTTATGCTGC--------T---CTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTT
66 TCGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTT
*
816929 TGGCAGATAGCCCTTCTCGACTTAAACTATGCTGC
131 TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC
816964 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
* *
817029 TCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTT
66 TCGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTT
817094 TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC
131 TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC
* **
817129 AAATGATGAGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGG-TCACAGATAACCCTT
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTC-TTTGGTTGGCAGATAACCCTT
* * * * *
817193 CT-AACATTGAGTTATGCTGTAAATGATATGCCATCGAAGATGAGTGTAATCGAACTCG-AGGAT
65 CTCGAC-TTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGG-T
817256 CTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC
128 CTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC
* *
817294 AAATGATATGCCTTGGAGCTGAGCGTTGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
* * * * *
817359 TCGACTTAAGTTATGCTGCAAATGATATG-CCTTGGAGCTGAGCGGAGTCGAACTCGAAGGTCTT
66 TCGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTC--
* * * *
817423 TTGTGGCAGATAGCCCTTCTGGCCTTGAGCTAAGCTGC
129 TT-TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC
817461 AAAT
1 AAAT
817465 AGTTTGTTTA
Statistics
Matches: 593, Mismatches: 42, Indels: 38
0.88 0.06 0.06
Matches are distributed among these distances:
154 144 0.24
157 1 0.00
162 1 0.00
164 31 0.05
165 372 0.63
166 9 0.02
167 35 0.06
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (165 bp):
AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
TCGACTTAAGTTATGCTGCAAATGATATGCCCTCGAAGCTGAGTGTAATCGAACTCGAAGGTCTT
TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGC
Found at i:817189 original size:319 final size:323
Alignment explanation
Indices: 816645--817464 Score: 1231
Period size: 319 Copynumber: 2.5 Consensus size: 323
816635 GTTATGCAGT
816645 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
* *
816710 TCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGGAGCTGATTGTAATCAAACTCGAAGGTCTT
66 TCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGGAGCTGAGTGTAATCGAACTCGAAGGTCTT
* * *
816775 TGGCAGATAGCCCTTCTCGACTTATGCTATGCTGCAAATGATGTGCCTTGTAGCTGAGCGTAGTC
131 TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGAGCCTTGGAGCTGAGCGTAGTC
* ** * *
816840 GAACTCAAATGTATTTGGTTGGCAGATAACCCTTCTCGAC-TTAAGTTATGC-TG-CT-C-TCGA
196 GAACTCAAAGGTATTTGGTTCACAGATAACCCTTCT-AACATTAAGTTATGCATGAATCCATCGA
* *
816900 AGCTGAGTGTAATCGAACTCGAGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAACTATGCTGC
260 AGATGAGTGTAATCGAACTCGAGGATCTTTGGCAGATAGCCCTTCTCGACTTAAACTATGCTGC
816964 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
* *
817029 TCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGAGGGTCTT
66 TCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGGAGCTGAGTGTAATCGAACTCGAAGGTCTT
817094 TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGAGCCTTGGAGCTGAGCGTAGTC
131 TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGAGCCTTGGAGCTGAGCGTAGTC
* *
817159 GAACTCAAAGGTCTTTTGG-TCACAGATAACCCTTCTAACATTGAGTTATGCTGTAAATGATATG
196 GAACTCAAAGGT-ATTTGGTTCACAGATAACCCTTCTAACATTAAGTTATGC-----ATGA-AT-
*
817223 CCATCGAAGATGAGTGTAATCGAACTCGAGGATCTTTGGCAGATAGCCCTTCTCGACTTAAGCTA
253 CCATCGAAGATGAGTGTAATCGAACTCGAGGATCTTTGGCAGATAGCCCTTCTCGACTTAAACTA
817288 TGCTGC
318 TGCTGC
* *
817294 AAATGATATGCCTTGGAGCTGAGCGTTGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
1 AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
* * * * *
817359 TCGACTTAAGTTATGCTGCAAATGATATG-CCTTGGAGCTGAGCGGAGTCGAACTCGAAGGTCTT
66 TCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGGAGCTGAGTGTAATCGAACTCGAAGGTC--
* * * *
817423 TTGTGGCAGATAGCCCTTCTGGCCTTGAGCTAAGCTGCAAAT
129 TT-TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
817465 AGTTTGTTTA
Statistics
Matches: 455, Mismatches: 30, Indels: 19
0.90 0.06 0.04
Matches are distributed among these distances:
318 2 0.00
319 224 0.49
320 5 0.01
325 2 0.00
327 1 0.00
329 28 0.06
330 156 0.34
331 2 0.00
332 35 0.08
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (323 bp):
AAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGGCAGATAACCCTTC
TCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGGAGCTGAGTGTAATCGAACTCGAAGGTCTT
TGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGAGCCTTGGAGCTGAGCGTAGTC
GAACTCAAAGGTATTTGGTTCACAGATAACCCTTCTAACATTAAGTTATGCATGAATCCATCGAA
GATGAGTGTAATCGAACTCGAGGATCTTTGGCAGATAGCCCTTCTCGACTTAAACTATGCTGC
Found at i:818033 original size:18 final size:18
Alignment explanation
Indices: 818006--818041 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
817996 TGTTAAATCC
*
818006 CCAAAGATGCCCCAATAT
1 CCAAAAATGCCCCAATAT
818024 CCAAAAATGCCCCAATAT
1 CCAAAAATGCCCCAATAT
818042 TCGATGTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.33, G:0.08, T:0.17
Consensus pattern (18 bp):
CCAAAAATGCCCCAATAT
Found at i:818479 original size:22 final size:22
Alignment explanation
Indices: 818453--818529 Score: 136
Period size: 22 Copynumber: 3.5 Consensus size: 22
818443 TCATGTTTGG
818453 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
818475 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
* *
818497 TCATAGGTTTGGTATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
818519 TCAAAGGTTTG
1 TCAAAGGTTTG
818530 ATGGGGTAGC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.22, C:0.12, G:0.27, T:0.39
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:819223 original size:15 final size:16
Alignment explanation
Indices: 819185--819224 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
819175 CTCTGTTTTC
819185 TTTGTT-TTTTGCTTT
1 TTTGTTCTTTTGCTTT
819200 TTTGCTTCTTTT-CTTT
1 TTTG-TTCTTTTGCTTT
819216 TTTGTTCTT
1 TTTGTTCTT
819225 GATTGAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 9 0.39
16 10 0.43
17 4 0.17
ACGTcount: A:0.00, C:0.12, G:0.10, T:0.78
Consensus pattern (16 bp):
TTTGTTCTTTTGCTTT
Found at i:823118 original size:37 final size:36
Alignment explanation
Indices: 823077--823173 Score: 104
Period size: 37 Copynumber: 2.6 Consensus size: 36
823067 GTGCTTGTGG
* *
823077 ATCCTATCTTTAGGAGTTTAAATAATAGTAGAACTCT
1 ATCCTAT-TTTAGGAGTTTAAATAATAGCAAAACTCT
* * *
823114 ATCCTATTTTTAGGAGTTTGAATCATAGCAAAATTCT
1 ATCCTA-TTTTAGGAGTTTAAATAATAGCAAAACTCT
* *
823151 ATCATATTATTAAGAGTTTAAAT
1 ATCCTATT-TTAGGAGTTTAAAT
823174 CCTAGTAGGA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
36 2 0.04
37 47 0.94
38 1 0.02
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.40
Consensus pattern (36 bp):
ATCCTATTTTAGGAGTTTAAATAATAGCAAAACTCT
Found at i:827045 original size:26 final size:26
Alignment explanation
Indices: 827015--827077 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 26
827005 TATGGAAAAC
** *
827015 ATGTTTATTCACTTTTGTTGTTTTAT
1 ATGTTTATTCACTTTTACTATTTTAT
*
827041 ATGTTTGTTCACTTTTACTATTTTAT
1 ATGTTTATTCACTTTTACTATTTTAT
827067 ATGTTTATTCA
1 ATGTTTATTCA
827078 ACTTGATAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.19, C:0.10, G:0.10, T:0.62
Consensus pattern (26 bp):
ATGTTTATTCACTTTTACTATTTTAT
Found at i:828724 original size:2 final size:2
Alignment explanation
Indices: 828717--828748 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
828707 TTTAACGTTA
828717 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
828749 TTACTTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:829050 original size:15 final size:14
Alignment explanation
Indices: 829028--829062 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
829018 TATTTTATTC
829028 TTTTTTATTATCAT
1 TTTTTTATTATCAT
*
829042 TTTTATTATTATTAT
1 TTTT-TTATTATCAT
829057 TTTTTT
1 TTTTTT
829063 GTTTTATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTTTATTATCAT
Found at i:829205 original size:19 final size:20
Alignment explanation
Indices: 829159--829205 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
829149 TATGTTGTCA
829159 TTTTATTTTTTATTTTTACTC
1 TTTT-TTTTTTATTTTTACTC
*
829180 TTATTTTTATTATTTTT-C-C
1 TT-TTTTTTTTATTTTTACTC
829199 TTTTTTT
1 TTTTTTT
829206 CCTCGTTTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 5 0.21
19 3 0.12
20 1 0.04
21 13 0.54
22 2 0.08
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTTTTTTTATTTTTACTC
Found at i:830345 original size:15 final size:16
Alignment explanation
Indices: 830325--830354 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
830315 TCTTTTTCTT
830325 TTTTATTTTC-TTTTA
1 TTTTATTTTCATTTTA
830340 TTTTATTTTCATTTT
1 TTTTATTTTCATTTT
830355 TTGCATCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTATTTTCATTTTA
Found at i:832031 original size:95 final size:94
Alignment explanation
Indices: 831931--832186 Score: 352
Period size: 95 Copynumber: 2.7 Consensus size: 94
831921 AATATTATAT
*
831931 ATATACAATAAAACTTGAGCTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGACTTTATGGATAA
1 ATATACAATAAAACTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCG-CTTTATGGATAA
831996 GATTCAGCTAGCCTGATAAAGGTGATTACA
65 GATTCAGCTAGCCTGATAAAGGTGATTACA
* * *
832026 ATATACAATAAAGCTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGTCCCTGTTTTATGGATAA
1 ATATACAATAAAACTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACG-CCCCGCTTTATGGATAA
* * *
832091 TATTCTGCTAGCCTGATAAAGGTGATTATA
65 GATTCAGCTAGCCTGATAAAGGTGATTACA
* * *
832121 ATAT-CAATACAATGACACTGAGTTGTCCCTCTAGAGCAATTGGTTAAACACTCCGGCTTTATGG
1 ATATACAATA-AA--AC-TTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGC-CCCGCTTTATGG
832185 AT
61 AT
832187 TCAGCTAGCC
Statistics
Matches: 143, Mismatches: 12, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
94 5 0.03
95 89 0.62
96 4 0.03
97 2 0.01
98 43 0.30
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31
Consensus pattern (94 bp):
ATATACAATAAAACTTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCGCTTTATGGATAAG
ATTCAGCTAGCCTGATAAAGGTGATTACA
Found at i:833421 original size:124 final size:124
Alignment explanation
Indices: 833201--833643 Score: 674
Period size: 124 Copynumber: 3.6 Consensus size: 124
833191 AGATTGGATT
* * *
833201 TCAACTTCACGATGAATGGGCCATCCACGATTTCAACTTCACGACGAAGGGAATCGTGCTCACC-
1 TCAACTTCACAACGAAGGGGCCATCCACGATTTCAACTTCACGACGAAGGGAATCGTGCTCACCA
*
833265 GCTAACATTCATCTTTAGATTAGATTTCAACTTCATGACGAAGGATATCCAATTCAAGGC
66 GC-AACATTCATCTTTAGATTGGATTTCAACTTCATGACGAAGGATATCCAATTCAAGGC
* * * *
833325 TCAACTTCAAAACGAAGGGGCCATCCACGGTTTCAACTTCACGACGAATGGAATCGTTCTCACCA
1 TCAACTTCACAACGAAGGGGCCATCCACGATTTCAACTTCACGACGAAGGGAATCGTGCTCACCA
833390 GCAACATTCATCTTTAGATTGGATTTCAACTTCATGACGAAGGATATCCAATTCAAGGC
66 GCAACATTCATCTTTAGATTGGATTTCAACTTCATGACGAAGGATATCCAATTCAAGGC
* * * * * *
833449 TCAATTTCACAACAAAGGGGCCATCTACGGTTTCAACTTCACGACGAAGGGAATCTTGTTCACCA
1 TCAACTTCACAACGAAGGGGCCATCCACGATTTCAACTTCACGACGAAGGGAATCGTGCTCACCA
* * *
833514 GTAACATTCATCTTTAGATTGGATTTCAACTTTACGACGAAGGATATCCAATTCAAGGC
66 GCAACATTCATCTTTAGATTGGATTTCAACTTCATGACGAAGGATATCCAATTCAAGGC
* * *
833573 TCAACTTCACAACGAAGGGGCCCTCCACGATTTCAACTTCACGACGAA-GGATATCGTGCCCACA
1 TCAACTTCACAACGAAGGGGCCATCCACGATTTCAACTTCACGACGAAGGGA-ATCGTGCTCACC
833637 AGCAACA
65 AGCAACA
833644 ATGCCATCCA
Statistics
Matches: 288, Mismatches: 29, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
123 3 0.01
124 283 0.98
125 2 0.01
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (124 bp):
TCAACTTCACAACGAAGGGGCCATCCACGATTTCAACTTCACGACGAAGGGAATCGTGCTCACCA
GCAACATTCATCTTTAGATTGGATTTCAACTTCATGACGAAGGATATCCAATTCAAGGC
Found at i:833842 original size:84 final size:84
Alignment explanation
Indices: 833686--834111 Score: 552
Period size: 84 Copynumber: 5.1 Consensus size: 84
833676 GATATCGTGT
* * * * * *
833686 TCATGTGCAACATAGCTCAAGGCAAGAATGGCTATTTGCCAACAAAATACCTTCGAGTTCGACTA
1 TCATTTGCAGCATAGCTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
* * *
833751 AGCTCAGCTCCAAGACACA
66 CGCTCAGCTCAAAGGCACA
* * * *
833770 TCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACAAAATACCTTCGAGTTTGACTA
1 TCATTTGCAGCATAGCTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
*
833835 CGCTCAGCTCAAAGGCATA
66 CGCTCAGCTCAAAGGCACA
* * *
833854 TCATTTGCAGCATAACTCAAGGCTAGAAGGGTTATCTGCCAACCAAAGACCTTCGAGTTCGACTA
1 TCATTTGCAGCATAGCTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
*
833919 CGCTCAGCTCCAAGGCACA
66 CGCTCAGCTCAAAGGCACA
* * * * *
833938 TCATTTGCAACATAGCTCAAGGCAGGAAGGGTTATTTGCCAACAAAAGACTTTCGAGTTCGATTA
1 TCATTTGCAGCATAGCTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
*
834003 CACTCAGCTCAAAGGCACA
66 CGCTCAGCTCAAAGGCACA
* * * *
834022 TCATTTACAGCATAGCTTAAGGCAAGAAGGGTTATCTGCCAACCAAAGACC-TCTGAGTTTGATC
1 TCATTTGCAGCATAGCTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTC-GAGTTCGA-C
834086 ATA--CTCAGCTCAAAGGCACA
64 -TACGCTCAGCTCAAAGGCACA
834106 TCATTT
1 TCATTT
834112 ACACCTTAGA
Statistics
Matches: 303, Mismatches: 36, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
83 2 0.01
84 299 0.99
86 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (84 bp):
TCATTTGCAGCATAGCTCAAGGCAAGAAGGGTTATCTGCCAACAAAAGACCTTCGAGTTCGACTA
CGCTCAGCTCAAAGGCACA
Found at i:834899 original size:14 final size:11
Alignment explanation
Indices: 834877--834915 Score: 78
Period size: 11 Copynumber: 3.5 Consensus size: 11
834867 CAACAGCAAT
834877 AACCAAACAAC
1 AACCAAACAAC
834888 AACCAAACAAC
1 AACCAAACAAC
834899 AACCAAACAAC
1 AACCAAACAAC
834910 AACCAA
1 AACCAA
834916 TTTCAGTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.64, C:0.36, G:0.00, T:0.00
Consensus pattern (11 bp):
AACCAAACAAC
Found at i:835535 original size:13 final size:13
Alignment explanation
Indices: 835517--835552 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
835507 GGGCTTTATA
835517 TGACCCATGAAAC
1 TGACCCATGAAAC
835530 TGACCCATGAAAC
1 TGACCCATGAAAC
835543 TGACCCATGA
1 TGACCCATGA
835553 CTCGAGCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.36, C:0.31, G:0.17, T:0.17
Consensus pattern (13 bp):
TGACCCATGAAAC
Found at i:836223 original size:21 final size:20
Alignment explanation
Indices: 836184--836232 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
836174 CTTTGTTTTG
*
836184 TTTTATGTATTTATGTTATCA
1 TTTTATTTATTTATGTTAT-A
*
836205 TTTTATTTATTT-TGTTTATT
1 TTTTATTTATTTATG-TTATA
836225 TTTTATTT
1 TTTTATTT
836233 TTACTTATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.18, C:0.02, G:0.06, T:0.73
Consensus pattern (20 bp):
TTTTATTTATTTATGTTATA
Found at i:836228 original size:20 final size:20
Alignment explanation
Indices: 836153--836232 Score: 65
Period size: 20 Copynumber: 3.9 Consensus size: 20
836143 CCATTTTTTC
* *
836153 TTTGTTTTAATTTTTATATTAC
1 TTTG-TTTATTTTTTAT-TTAT
* *
836175 TTTGTTT-TGTTTTATGTAT
1 TTTGTTTATTTTTTATTTAT
*
836194 TTATG-TTATCATTTTATTTAT
1 TT-TGTTTAT-TTTTTATTTAT
836215 TTTGTTTATTTTTTATTT
1 TTTGTTTATTTTTTATTT
836233 TTACTTATCT
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
19 6 0.13
20 19 0.40
21 18 0.38
22 4 0.09
ACGTcount: A:0.17, C:0.03, G:0.07, T:0.72
Consensus pattern (20 bp):
TTTGTTTATTTTTTATTTAT
Found at i:836656 original size:2 final size:2
Alignment explanation
Indices: 836649--836699 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
836639 CGGTCGAGAC
836649 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
836691 AT AT AT AT A
1 AT AT AT AT A
836700 AGTTTAAAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:838520 original size:15 final size:14
Alignment explanation
Indices: 838497--838549 Score: 72
Period size: 15 Copynumber: 3.7 Consensus size: 14
838487 AATAATTTAA
*
838497 TAATAATTTATTAT
1 TAATAATTTAATAT
838511 TAATTAATTTAATAT
1 TAA-TAATTTAATAT
838526 TAAT-ATTTAAATAT
1 TAATAATTT-AATAT
838540 TAATAATTTA
1 TAATAATTTA
838550 TTAAATGACT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
13 4 0.11
14 14 0.40
15 17 0.49
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TAATAATTTAATAT
Found at i:839427 original size:2 final size:2
Alignment explanation
Indices: 839420--839468 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
839410 TAAAAATTTA
839420 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
839462 AT AT AT A
1 AT AT AT A
839469 AAGCTCAAAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:840571 original size:216 final size:215
Alignment explanation
Indices: 840329--841234 Score: 1450
Period size: 216 Copynumber: 4.2 Consensus size: 215
840319 ATTTAAGAAT
*
840329 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAATAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
*
840394 GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAATTACTAAATTATACC
66 GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAGTACTAAATTATACC
* * * *
840459 CATTTAAAAAGTTATGGGTCAATTTAAAAAATATAATTAAGTAATAAGTATGGATCAATTTCATA
131 CATTTAAAAAGTTATGGGCCAA-TTAAAAAATATAAATAAGTAATAAGTATGGGTCAATTTCAGA
*
840524 TGCAAATAAAATTTGGAGGAC
195 TGCAAATATAATTTGGAGGAC
*
840545 TAAATTGAAAAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
* * *
840610 CGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATACAAAAAATACTAAATTATACC
66 GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAGTACTAAATTATACC
* *
840675 CATTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAAGTATGGGTCAATTTCAGAT
131 CATTTAAAAAGTTATGGGCCAATTAAAAAATATAAATAAGTAATAAGTATGGGTCAATTTCAGAT
840740 GCAAATATAATTTGGAGGAC
196 GCAAATATAATTTGGAGGAC
840760 TAAATTGAACAAATATGAAATTACAAATAAAAA-TTAAATAAATTAAAC-A-ACACA---A--AG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
* * *
840817 GAATCAAATCGAAATAATTTTAAATTGTGAGGTTTAAATTAATACAAAAAAGTACTAAATGATAC
66 GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATAC-AAAAAGTACTAAATTATAC
*
840882 CCATTTAAAAAGTTATGGGCCAATTAAAAAATATAACTAAGTAATAAGTATGGGTCAATTTCAGA
130 CCATTTAAAAAGTTATGGGCCAATTAAAAAATATAAATAAGTAATAAGTATGGGTCAATTTCAGA
* *
840947 TACAAATATAATTTGAAGGAC
195 TGCAAATATAATTTGGAGGAC
* *
840968 TAAATTGAACAAATATAAAATTAAAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
* ** *
841033 GGATCAAATCGAAAATAATTTTAAATTGTGAGGTTTAAATTAATATTAAAAGTACTAAATTCTAC
66 GGATCAAATCG-AAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAGTACTAAATTATAC
* * *
841098 CCATTTAAAAAGTTACGGGCCAATTAAAAAATATAAATAAGTAATAATTATGGGTCAATTTCATA
130 CCATTTAAAAAGTTATGGGCCAATTAAAAAATATAAATAAGTAATAAGTATGGGTCAATTTCAGA
*
841163 TGCAAATATAATTTTGAGGAC
195 TGCAAATATAATTTGGAGGAC
*
841184 TAAATTGAACAAATATGAAATTACAAATAGAAAATTTAAATAAATTGAACA
1 TAAATTGAACAAATATGAAATTACAAATA-AAAATTTAAATAAATTAAACA
841235 TATATGGTTT
Statistics
Matches: 638, Mismatches: 41, Indels: 21
0.91 0.06 0.03
Matches are distributed among these distances:
207 43 0.07
208 129 0.20
209 16 0.03
210 1 0.00
211 5 0.01
212 5 0.01
213 1 0.00
214 16 0.03
215 89 0.14
216 280 0.44
217 53 0.08
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.30
Consensus pattern (215 bp):
TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACAACACACATTGATGAG
GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAGTACTAAATTATACC
CATTTAAAAAGTTATGGGCCAATTAAAAAATATAAATAAGTAATAAGTATGGGTCAATTTCAGAT
GCAAATATAATTTGGAGGAC
Found at i:841192 original size:424 final size:427
Alignment explanation
Indices: 840329--841234 Score: 1453
Period size: 424 Copynumber: 2.1 Consensus size: 427
840319 ATTTAAGAAT
*
840329 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAATAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAA-CACACACA-T-A-GAG
* * *
840394 GGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAATTACTAAATTATACC
62 GAATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAGTACTAAATGATACC
* * *
840459 CATTTAAAAAGTTATGGGTCAATTTAAAAAATATAATTAAGTAATAAGTATGGATCAATTTCATA
127 CATTTAAAAAGTTATGGGCCAATTTAAAAAATATAACTAAGTAATAAGTATGGATCAATTTCAGA
* * * *
840524 TGCAAATAAAATTTGGAGGACTAAATTGAAAAAATATGAAATTACAAATAAAAATTTAAATAAAT
192 TACAAATAAAATTTGAAGGACTAAATTGAAAAAATATAAAATTAAAAATAAAAATTTAAATAAAT
*
840589 TAAACAACACACATTGATGAGCGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATA
257 TAAACAACACACATTGATGAGCGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATA
* *
840654 CAAAAAATACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAAT
322 CAAAAAATACTAAATTATACCCATTTAAAAAGTTACGGGCCAATTAAAAAATAGAAATAAGTAAT
840719 AAGTATGGGTCAATTTCAGATGCAAATATAATTTGGAGGAC
387 AAGTATGGGTCAATTTCAGATGCAAATATAATTTGGAGGAC
840760 TAAATTGAACAAATATGAAATTACAAATAAAAA-TTAAATAAATTAAACA-ACACA-A-AGGAAT
1 TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACACACACATAGAGGAAT
*
840821 CAAATCGAAATAATTTTAAATTGTGAGGTTTAAATTAATACAAAAAAGTACTAAATGATACCCAT
66 CAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATAC-AAAAAGTACTAAATGATACCCAT
*
840886 TTAAAAAGTTATGGGCCAA-TTAAAAAATATAACTAAGTAATAAGTATGGGTCAATTTCAGATAC
130 TTAAAAAGTTATGGGCCAATTTAAAAAATATAACTAAGTAATAAGTATGGATCAATTTCAGATAC
* *
840950 AAATATAATTTGAAGGACTAAATTGAACAAATATAAAATTAAAAATAAAAATTTAAATAAATTAA
195 AAATAAAATTTGAAGGACTAAATTGAAAAAATATAAAATTAAAAATAAAAATTTAAATAAATTAA
* * **
841015 ACAACACACATTGATGAGGGATCAAATCGAAAATAATTTTAAATTGTGAGGTTTAAATTAATATT
260 ACAACACACATTGATGAGCGATCAAATCG-AAATAATTTTAAATTGTGAGGTTGAAATTAATACA
* * *
841080 AAAAGTACTAAATTCTACCCATTTAAAAAGTTACGGGCCAATTAAAAAATATAAATAAGTAATAA
324 AAAAATACTAAATTATACCCATTTAAAAAGTTACGGGCCAATTAAAAAATAGAAATAAGTAATAA
* * *
841145 TTATGGGTCAATTTCATATGCAAATATAATTTTGAGGAC
389 GTATGGGTCAATTTCAGATGCAAATATAATTTGGAGGAC
*
841184 TAAATTGAACAAATATGAAATTACAAATAGAAAATTTAAATAAATTGAACA
1 TAAATTGAACAAATATGAAATTACAAATA-AAAATTTAAATAAATTAAACA
841235 TATATGGTTT
Statistics
Matches: 442, Mismatches: 29, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
423 174 0.39
424 195 0.44
425 5 0.01
426 15 0.03
428 5 0.01
429 1 0.00
430 14 0.03
431 33 0.07
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.30
Consensus pattern (427 bp):
TAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAAACACACACATAGAGGAAT
CAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAAAAGTACTAAATGATACCCATT
TAAAAAGTTATGGGCCAATTTAAAAAATATAACTAAGTAATAAGTATGGATCAATTTCAGATACA
AATAAAATTTGAAGGACTAAATTGAAAAAATATAAAATTAAAAATAAAAATTTAAATAAATTAAA
CAACACACATTGATGAGCGATCAAATCGAAATAATTTTAAATTGTGAGGTTGAAATTAATACAAA
AAATACTAAATTATACCCATTTAAAAAGTTACGGGCCAATTAAAAAATAGAAATAAGTAATAAGT
ATGGGTCAATTTCAGATGCAAATATAATTTGGAGGAC
Found at i:841249 original size:7 final size:7
Alignment explanation
Indices: 841240--841329 Score: 99
Period size: 7 Copynumber: 12.9 Consensus size: 7
841230 GAACATATAT
*
841240 GGTTTAT
1 GGTTTAG
841247 GGTTTAG
1 GGTTTAG
* *
841254 GATTAAG
1 GGTTTAG
841261 GGTTTAG
1 GGTTTAG
841268 GGTTTAG
1 GGTTTAG
* *
841275 AGTTTAT
1 GGTTTAG
*
841282 GTTTTAG
1 GGTTTAG
841289 GGTTTAG
1 GGTTTAG
*
841296 GGTTTAT
1 GGTTTAG
*
841303 GTTTTAG
1 GGTTTAG
841310 GGTTTAG
1 GGTTTAG
*
841317 GGTTTAA
1 GGTTTAG
841324 GGTTTA
1 GGTTTA
841330 TATTTATATA
Statistics
Matches: 67, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 67 1.00
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.48
Consensus pattern (7 bp):
GGTTTAG
Found at i:841280 original size:28 final size:28
Alignment explanation
Indices: 841240--841330 Score: 112
Period size: 28 Copynumber: 3.2 Consensus size: 28
841230 GAACATATAT
*
841240 GGTTTATGGTTTAGGATTAAGGGTTTAG
1 GGTTTATGGTTTAGGATTTAGGGTTTAG
* *
841268 GGTTTA-GAGTTTATGTTTTAGGGTTTAG
1 GGTTTATG-GTTTAGGATTTAGGGTTTAG
* * *
841296 GGTTTATGTTTTAGGGTTTAGGGTTTAA
1 GGTTTATGGTTTAGGATTTAGGGTTTAG
841324 GGTTTAT
1 GGTTTAT
841331 ATTTATATAC
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.02
28 52 0.96
29 1 0.02
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.48
Consensus pattern (28 bp):
GGTTTATGGTTTAGGATTTAGGGTTTAG
Found at i:841287 original size:21 final size:21
Alignment explanation
Indices: 841263--841322 Score: 111
Period size: 21 Copynumber: 2.9 Consensus size: 21
841253 GGATTAAGGG
*
841263 TTTAGGGTTTAGAGTTTATGT
1 TTTAGGGTTTAGGGTTTATGT
841284 TTTAGGGTTTAGGGTTTATGT
1 TTTAGGGTTTAGGGTTTATGT
841305 TTTAGGGTTTAGGGTTTA
1 TTTAGGGTTTAGGGTTTA
841323 AGGTTTATAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.17, C:0.00, G:0.32, T:0.52
Consensus pattern (21 bp):
TTTAGGGTTTAGGGTTTATGT
Found at i:841350 original size:20 final size:20
Alignment explanation
Indices: 841327--841381 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
841317 GGTTTAAGGT
* *
841327 TTATATTTATATACTATATA
1 TTATATATATAAACTATATA
841347 TTATATATATAAACTATATA
1 TTATATATATAAACTATATA
841367 TACTATATAGTATAA
1 T--TATATA-TATAA
841382 TTTACATATG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
20 19 0.63
22 6 0.20
23 5 0.17
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.47
Consensus pattern (20 bp):
TTATATATATAAACTATATA
Found at i:841353 original size:9 final size:9
Alignment explanation
Indices: 841334--841375 Score: 50
Period size: 9 Copynumber: 4.4 Consensus size: 9
841324 GGTTTATATT
841334 TATATACTA
1 TATATACTA
841343 TATATTA-TA
1 TATA-TACTA
841352 TATATAAACTA
1 TATAT--ACTA
841363 TATATACTA
1 TATATACTA
841372 TATA
1 TATA
841376 GTATAATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
8 1 0.03
9 18 0.62
10 3 0.10
11 7 0.24
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (9 bp):
TATATACTA
Found at i:841397 original size:34 final size:36
Alignment explanation
Indices: 841334--841402 Score: 97
Period size: 34 Copynumber: 2.0 Consensus size: 36
841324 GGTTTATATT
*
841334 TATATACTATATATTATATATATAAACTATATATAC
1 TATATACTATATATTATACATATAAACTATATATAC
* *
841370 TATATAGTATA-ATT-TACATATGAACTATATATA
1 TATATACTATATATTATACATATAAACTATATATA
841403 AAAATCCTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 17 0.57
35 3 0.10
36 10 0.33
ACGTcount: A:0.46, C:0.07, G:0.03, T:0.43
Consensus pattern (36 bp):
TATATACTATATATTATACATATAAACTATATATAC
Found at i:841487 original size:33 final size:33
Alignment explanation
Indices: 841438--841650 Score: 219
Period size: 33 Copynumber: 6.5 Consensus size: 33
841428 CCCTAAACCC
* *
841438 TAAACTATACATTATATAGTTTATTAGTATATA
1 TAAACTATATATTATATAGTTCATTAGTATATA
* *
841471 TAAACTATATAATATATATAG-ACTATATGGTATATA
1 TAAACTATAT-AT-TATATAGTTC-AT-TAGTATATA
* *
841507 TAAACTATACATTATATATAGTTCATTAGTGTATA
1 TAAACTATATA-T-TATATAGTTCATTAGTATATA
841542 TAAACTATATATTATATAGTTCATTAGTATATA
1 TAAACTATATATTATATAGTTCATTAGTATATA
* *
841575 TAACCTATATAGTATAT-G------A-TATATA
1 TAAACTATATATTATATAGTTCATTAGTATATA
*
841600 CAAACTATATATTATATAGTTCATTAGTATATA
1 TAAACTATATATTATATAGTTCATTAGTATATA
*
841633 TAAACTATATAGTATATA
1 TAAACTATATATTATATA
841651 TAAACTATAT
Statistics
Matches: 149, Mismatches: 17, Indels: 28
0.77 0.09 0.14
Matches are distributed among these distances:
25 20 0.13
26 2 0.01
32 2 0.01
33 66 0.44
34 3 0.02
35 27 0.18
36 28 0.19
37 1 0.01
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (33 bp):
TAAACTATATATTATATAGTTCATTAGTATATA
Found at i:841488 original size:18 final size:18
Alignment explanation
Indices: 841465--841661 Score: 93
Period size: 18 Copynumber: 10.9 Consensus size: 18
841455 AGTTTATTAG
841465 TATATATAAACTATATAA
1 TATATATAAACTATATAA
* **
841483 TATATATAGACTATATGG
1 TATATATAAACTATATAA
* *
841501 TATATATAAACTATACAT
1 TATATATAAACTATATAA
** *
841519 TATATAT-AGTTCAT-TAG
1 TATATATAAACT-ATATAA
* *
841536 TGTATATAAACTATATAT
1 TATATATAAACTATATAA
** *
841554 TATATAGTTCATTAGTAT-A
1 TATATA-TAAACTA-TATAA
* * *
841573 TATAACCTATATAGTATATGA
1 TAT-A--TATAAACTATATAA
*
841594 TATATACAAACTATAT-A
1 TATATATAAACTATATAA
** *
841611 T-TATAT-AGTTCAT-TAG
1 TATATATAAACT-ATATAA
*
841627 TATATATAAACTATATAG
1 TATATATAAACTATATAA
841645 TATATATAAACTATATA
1 TATATATAAACTATATA
841662 TTAATTTATT
Statistics
Matches: 133, Mismatches: 32, Indels: 28
0.69 0.17 0.15
Matches are distributed among these distances:
15 3 0.02
16 7 0.05
17 20 0.15
18 78 0.59
19 7 0.05
20 8 0.06
21 8 0.06
22 2 0.02
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.42
Consensus pattern (18 bp):
TATATATAAACTATATAA
Found at i:841576 original size:17 final size:17
Alignment explanation
Indices: 841519--841576 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
841509 AACTATACAT
841519 TATATATAGTTCATTAG
1 TATATATAGTTCATTAG
* **
841536 TGTATATA-AAC-TATA-
1 TATATATAGTTCAT-TAG
841551 TATTATATAGTTCATTAG
1 TA-TATATAGTTCATTAG
841569 TATATATA
1 TATATATA
841577 ACCTATATAG
Statistics
Matches: 30, Mismatches: 6, Indels: 10
0.65 0.13 0.22
Matches are distributed among these distances:
15 2 0.07
16 9 0.30
17 16 0.53
18 3 0.10
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.47
Consensus pattern (17 bp):
TATATATAGTTCATTAG
Found at i:841607 original size:25 final size:25
Alignment explanation
Indices: 841569--841616 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
841559 AGTTCATTAG
* *
841569 TATATATAACCTATATAGTATATGA
1 TATATACAAACTATATAGTATATGA
*
841594 TATATACAAACTATATATTATAT
1 TATATACAAACTATATAGTATAT
841617 AGTTCATTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.42
Consensus pattern (25 bp):
TATATACAAACTATATAGTATATGA
Found at i:841608 original size:58 final size:58
Alignment explanation
Indices: 841538--841649 Score: 206
Period size: 58 Copynumber: 1.9 Consensus size: 58
841528 TTCATTAGTG
* *
841538 TATATAAACTATATATTATATAGTTCATTAGTATATATAACCTATATAGTATATGATA
1 TATACAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGATA
841596 TATACAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATAT
1 TATACAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATAT
841650 ATAAACTATA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
Consensus pattern (58 bp):
TATACAAACTATATATTATATAGTTCATTAGTATATATAAACTATATAGTATATGATA
Found at i:841639 original size:91 final size:94
Alignment explanation
Indices: 841476--841650 Score: 257
Period size: 91 Copynumber: 1.9 Consensus size: 94
841466 ATATATAAAC
* * * *
841476 TATATAATATATATAGACTATATGGTATATATAAACTATACATTATATATAGTTCATTAGTGTAT
1 TATATAACATATATAGA-TATATGATATATACAAACTATACATTATATATAGTTCATTAGTATAT
*
841541 ATAAACTATATATTATATAGTTCATTAGTA
65 ATAAACTATATAGTATATAGTTCATTAGTA
* *
841571 TATATAACCTATATAG-TATATGATATATACAAACTATATA-T-TATATAGTTCATTAGTATATA
1 TATATAACATATATAGATATATGATATATACAAACTATACATTATATATAGTTCATTAGTATATA
841633 TAAACTATATAGTATATA
66 TAAACTATATAGTATATA
841651 TAAACTATAT
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
91 37 0.51
92 1 0.01
93 21 0.29
95 14 0.19
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.42
Consensus pattern (94 bp):
TATATAACATATATAGATATATGATATATACAAACTATACATTATATATAGTTCATTAGTATATA
TAAACTATATAGTATATAGTTCATTAGTA
Found at i:843340 original size:23 final size:23
Alignment explanation
Indices: 843280--843369 Score: 101
Period size: 23 Copynumber: 3.8 Consensus size: 23
843270 CATAATTCAA
*
843280 GTCAAGTATCATG-TCAGAATTCAG
1 GTCAA-TATCA-GATCAGAATCCAG
* *
843304 GTCATGTATCAGATCAGAATCCAT
1 GTCA-ATATCAGATCAGAATCCAG
843328 GTCAATATCAGATCAGAATCCAG
1 GTCAATATCAGATCAGAATCCAG
* *
843351 GTCAATATCATAACAGAAT
1 GTCAATATCAGATCAGAAT
843370 TCAAATTTGA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
23 35 0.61
24 22 0.39
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.27
Consensus pattern (23 bp):
GTCAATATCAGATCAGAATCCAG
Found at i:844523 original size:18 final size:18
Alignment explanation
Indices: 844502--844537 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
844492 CTGCCATCCG
*
844502 ATCTTATTATTTAATTCA
1 ATCTTATCATTTAATTCA
*
844520 ATCTTATCATTTACTTCA
1 ATCTTATCATTTAATTCA
844538 GTCCTTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (18 bp):
ATCTTATCATTTAATTCA
Found at i:845859 original size:13 final size:13
Alignment explanation
Indices: 845854--845902 Score: 80
Period size: 13 Copynumber: 3.8 Consensus size: 13
845844 GTCAACGGGT
*
845854 CGGGTCGGGTCAA
1 CGGGTCGGGTAAA
*
845867 CTGGTCGGGTAAA
1 CGGGTCGGGTAAA
845880 CGGGTCGGGTAAA
1 CGGGTCGGGTAAA
845893 CGGGTCGGGT
1 CGGGTCGGGT
845903 CGGGTCGGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.16, C:0.18, G:0.47, T:0.18
Consensus pattern (13 bp):
CGGGTCGGGTAAA
Found at i:845864 original size:18 final size:18
Alignment explanation
Indices: 845841--845876 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
845831 CAACGGTCAA
845841 CGGGTCAACGGGTCGGGT
1 CGGGTCAACGGGTCGGGT
*
845859 CGGGTCAACTGGTCGGGT
1 CGGGTCAACGGGTCGGGT
845877 AAACGGGTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.11, C:0.22, G:0.47, T:0.19
Consensus pattern (18 bp):
CGGGTCAACGGGTCGGGT
Found at i:845872 original size:8 final size:8
Alignment explanation
Indices: 845826--845854 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
845816 GTGGTCAACG
845826 CGGGTCAA
1 CGGGTCAA
845834 C-GGTCAA
1 CGGGTCAA
845841 CGGGTCAA
1 CGGGTCAA
845849 CGGGTC
1 CGGGTC
845855 GGGTCGGGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.21, C:0.28, G:0.38, T:0.14
Consensus pattern (8 bp):
CGGGTCAA
Found at i:847810 original size:2 final size:2
Alignment explanation
Indices: 847803--847843 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
847793 TTTTTAAAAC
847803 AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT A- AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
847843 A
1 A
847844 CCCCATCCGT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.05
2 35 0.95
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:847827 original size:19 final size:19
Alignment explanation
Indices: 847803--847843 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
847793 TTTTTAAAAC
847803 ATATATATATAATATATAT
1 ATATATATATAATATATAT
847822 ATATATATATAATATATAT
1 ATATATATATAATATATAT
847841 ATA
1 ATA
847844 CCCCATCCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATATATATAATATATAT
Found at i:847946 original size:35 final size:35
Alignment explanation
Indices: 847900--847974 Score: 132
Period size: 35 Copynumber: 2.1 Consensus size: 35
847890 ACCCCCGAAC
*
847900 AGTAAGGCCCTGAGCACAAAGCCGAGGAGCCTGCA
1 AGTAAGGCCCTGAGCACAAAGCCGAGGAGCCTCCA
*
847935 AGTAAGGCCCTGAGCACACAGCCGAGGAGCCTCCA
1 AGTAAGGCCCTGAGCACAAAGCCGAGGAGCCTCCA
847970 AGTAA
1 AGTAA
847975 TCTTCCTCCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.32, C:0.29, G:0.29, T:0.09
Consensus pattern (35 bp):
AGTAAGGCCCTGAGCACAAAGCCGAGGAGCCTCCA
Found at i:848069 original size:24 final size:23
Alignment explanation
Indices: 848042--848142 Score: 103
Period size: 23 Copynumber: 4.3 Consensus size: 23
848032 ATCAAAACAT
*
848042 AATTCAAGTCAAGTATCATATCAG
1 AATTCAAGTCAA-TATCAGATCAG
* *
848066 AATTCAGGTCATGTATCAGATCAG
1 AATTCAAGTCA-ATATCAGATCAG
* *
848090 AATCCATGTCAATATCAGATCAG
1 AATTCAAGTCAATATCAGATCAG
* * * *
848113 AATCCATGTCAATATCATAACAG
1 AATTCAAGTCAATATCAGATCAG
848136 AATTCAA
1 AATTCAA
848143 ATTTGAAATC
Statistics
Matches: 66, Mismatches: 10, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
23 37 0.56
24 29 0.44
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.28
Consensus pattern (23 bp):
AATTCAAGTCAATATCAGATCAG
Found at i:848109 original size:23 final size:23
Alignment explanation
Indices: 848049--848138 Score: 108
Period size: 23 Copynumber: 3.8 Consensus size: 23
848039 CATAATTCAA
* * *
848049 GTCAAGTATCATATCAGAATTCAG
1 GTCAA-TATCAGATCAGAATCCAT
*
848073 GTCATGTATCAGATCAGAATCCAT
1 GTCA-ATATCAGATCAGAATCCAT
848097 GTCAATATCAGATCAGAATCCAT
1 GTCAATATCAGATCAGAATCCAT
* *
848120 GTCAATATCATAACAGAAT
1 GTCAATATCAGATCAGAAT
848139 TCAAATTTGA
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
23 35 0.60
24 23 0.40
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (23 bp):
GTCAATATCAGATCAGAATCCAT
Found at i:849292 original size:18 final size:18
Alignment explanation
Indices: 849271--849306 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
849261 CTGCCATCCG
*
849271 ATCTTATTATTTAATTCA
1 ATCTTATCATTTAATTCA
*
849289 ATCTTATCATTTACTTCA
1 ATCTTATCATTTAATTCA
849307 GTCCTTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (18 bp):
ATCTTATCATTTAATTCA
Found at i:850608 original size:13 final size:13
Alignment explanation
Indices: 850590--850632 Score: 86
Period size: 13 Copynumber: 3.3 Consensus size: 13
850580 GCGGGTCAAC
850590 GGTCAACGGGTCG
1 GGTCAACGGGTCG
850603 GGTCAACGGGTCG
1 GGTCAACGGGTCG
850616 GGTCAACGGGTCG
1 GGTCAACGGGTCG
850629 GGTC
1 GGTC
850633 GGGTCAACTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.14, C:0.23, G:0.47, T:0.16
Consensus pattern (13 bp):
GGTCAACGGGTCG
Found at i:850619 original size:18 final size:18
Alignment explanation
Indices: 850609--850668 Score: 76
Period size: 18 Copynumber: 3.6 Consensus size: 18
850599 GTCGGGTCAA
850609 CGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACGGGT
850627 CGGGTCGGGTCAAC---T
1 CGGGTCGGGTCAACGGGT
*
850642 --GGTCGGGTCAATGGGT
1 CGGGTCGGGTCAACGGGT
850658 CGGGTCGGGTC
1 CGGGTCGGGTC
850669 GGGTTATGAC
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
13 11 0.31
15 1 0.03
16 1 0.03
18 23 0.64
ACGTcount: A:0.10, C:0.22, G:0.48, T:0.20
Consensus pattern (18 bp):
CGGGTCGGGTCAACGGGT
Found at i:850634 original size:31 final size:31
Alignment explanation
Indices: 850596--850668 Score: 128
Period size: 31 Copynumber: 2.4 Consensus size: 31
850586 CAACGGTCAA
850596 CGGGTCGGGTCAACGGGTCGGGTCAACGGGT
1 CGGGTCGGGTCAACGGGTCGGGTCAACGGGT
* *
850627 CGGGTCGGGTCAACTGGTCGGGTCAATGGGT
1 CGGGTCGGGTCAACGGGTCGGGTCAACGGGT
850658 CGGGTCGGGTC
1 CGGGTCGGGTC
850669 GGGTTATGAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.11, C:0.22, G:0.48, T:0.19
Consensus pattern (31 bp):
CGGGTCGGGTCAACGGGTCGGGTCAACGGGT
Found at i:850645 original size:13 final size:13
Alignment explanation
Indices: 850590--850663 Score: 69
Period size: 13 Copynumber: 5.3 Consensus size: 13
850580 GCGGGTCAAC
*
850590 GGTCAACGGGTCG
1 GGTCAACTGGTCG
*
850603 GGTCAACGGGTCG
1 GGTCAACTGGTCG
850616 GGTCAACGGGTCGGGTCG
1 GGTCAAC---T--GGTCG
850634 GGTCAACTGGTCG
1 GGTCAACTGGTCG
850647 GGTCAA-TGGGTCG
1 GGTCAACT-GGTCG
850660 GGTC
1 GGTC
850664 GGGTCGGGTT
Statistics
Matches: 54, Mismatches: 1, Indels: 12
0.81 0.01 0.18
Matches are distributed among these distances:
12 1 0.02
13 40 0.74
15 1 0.02
18 12 0.22
ACGTcount: A:0.14, C:0.22, G:0.46, T:0.19
Consensus pattern (13 bp):
GGTCAACTGGTCG
Found at i:850645 original size:26 final size:26
Alignment explanation
Indices: 850581--850645 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
850571 GTGGTCAACG
850581 CGGGTCAACGGTCAACGGGTCGGGTCAA
1 CGGGTCAACGGTCAACGGGTCGGGT--A
*
850609 CGGGTC--GGGTCAACGGGTCGGGT-
1 CGGGTCAACGGTCAACGGGTCGGGTA
850632 CGGGTCAACTGGTC
1 CGGGTCAAC-GGTC
850646 GGGTCAATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
23 6 0.19
26 20 0.62
28 6 0.19
ACGTcount: A:0.15, C:0.25, G:0.43, T:0.17
Consensus pattern (26 bp):
CGGGTCAACGGTCAACGGGTCGGGTA
Found at i:850691 original size:9 final size:9
Alignment explanation
Indices: 850677--850723 Score: 67
Period size: 9 Copynumber: 4.9 Consensus size: 9
850667 TCGGGTTATG
850677 ACCGGTCAA
1 ACCGGTCAA
850686 ACCGGTCAA
1 ACCGGTCAA
850695 CTATCCGGTCAA
1 --A-CCGGTCAA
850707 ACCGGTCAA
1 ACCGGTCAA
850716 ACCGGTCA
1 ACCGGTCA
850724 CTTTTGTCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
9 25 0.71
10 1 0.03
11 1 0.03
12 8 0.23
ACGTcount: A:0.30, C:0.34, G:0.21, T:0.15
Consensus pattern (9 bp):
ACCGGTCAA
Found at i:853306 original size:21 final size:22
Alignment explanation
Indices: 853282--853327 Score: 85
Period size: 21 Copynumber: 2.1 Consensus size: 22
853272 TTATTTTTTC
853282 TTTATATAAATTAAACTA-TAA
1 TTTATATAAATTAAACTATTAA
853303 TTTATATAAATTAAACTATTAA
1 TTTATATAAATTAAACTATTAA
853325 TTT
1 TTT
853328 TCTTTGCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (22 bp):
TTTATATAAATTAAACTATTAA
Found at i:853426 original size:26 final size:26
Alignment explanation
Indices: 853372--853432 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
853362 AATTTTATTA
**
853372 ATTTATTAAATAATATATAATATGCT
1 ATTTATTAAATAATATATAATATAAT
*
853398 ATTTATTAATTAATATCATAATA-AAT
1 ATTTATTAAATAATAT-ATAATATAAT
853424 ATTTTATTA
1 A-TTTATTA
853433 TAACATTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 17 0.57
27 13 0.43
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (26 bp):
ATTTATTAAATAATATATAATATAAT
Found at i:853598 original size:16 final size:16
Alignment explanation
Indices: 853577--853647 Score: 115
Period size: 16 Copynumber: 4.4 Consensus size: 16
853567 CGGATCATTT
853577 ACAGGTCAGGTTAAAA
1 ACAGGTCAGGTTAAAA
853593 ACAGGTCAGGTTAAAA
1 ACAGGTCAGGTTAAAA
* *
853609 ACATGTCAGGTTGAAA
1 ACAGGTCAGGTTAAAA
*
853625 ACAGGTCAGGTTGAAA
1 ACAGGTCAGGTTAAAA
853641 ACAGGTC
1 ACAGGTC
853648 GGGTAATACC
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.39, C:0.14, G:0.27, T:0.20
Consensus pattern (16 bp):
ACAGGTCAGGTTAAAA
Found at i:856380 original size:22 final size:22
Alignment explanation
Indices: 856352--856395 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
856342 CACTCAATAA
856352 AAAAAAAGC-AGGTTTCTACTAT
1 AAAAAAAGCAAGG-TTCTACTAT
856374 AAAAAAAGCAAGGTTCTACTAT
1 AAAAAAAGCAAGGTTCTACTAT
856396 TTTGGAGACC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 18 0.86
23 3 0.14
ACGTcount: A:0.48, C:0.14, G:0.14, T:0.25
Consensus pattern (22 bp):
AAAAAAAGCAAGGTTCTACTAT
Found at i:865511 original size:51 final size:51
Alignment explanation
Indices: 865416--865516 Score: 150
Period size: 51 Copynumber: 2.0 Consensus size: 51
865406 CATTTGAGAT
* * *
865416 GAAGGTTTACCATGATCCACCACAGGAAGTAGGGCCAGCGTTCTATGCAGC
1 GAAGATTTAACATGATCCACCACAGGAAGTAGGGCCAGCATTCTATGCAGC
*
865467 GAAGATTTAACATGATCCACCTA-AGGAAGTAGGGCGAGCATTCTATGCAG
1 GAAGATTTAACATGATCCACC-ACAGGAAGTAGGGCCAGCATTCTATGCAG
865517 ACAGATCCAG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 44 0.98
52 1 0.02
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.21
Consensus pattern (51 bp):
GAAGATTTAACATGATCCACCACAGGAAGTAGGGCCAGCATTCTATGCAGC
Found at i:867152 original size:17 final size:17
Alignment explanation
Indices: 867132--867185 Score: 67
Period size: 17 Copynumber: 3.2 Consensus size: 17
867122 TTAAAATATA
867132 AAATTACTAAAACAATT
1 AAATTACTAAAACAATT
867149 AAATTACTAAAA-AA-T
1 AAATTACTAAAACAATT
*
867164 AAAATACTAAAATACAATT
1 AAATTACT-AAA-ACAATT
867183 AAA
1 AAA
867186 ATTTTAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 8 0.25
16 5 0.16
17 13 0.41
18 2 0.06
19 4 0.12
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATTACTAAAACAATT
Found at i:867194 original size:34 final size:32
Alignment explanation
Indices: 867121--867195 Score: 89
Period size: 33 Copynumber: 2.2 Consensus size: 32
867111 ATTCAAATAC
*
867121 TTTAAAATATAAAATTACTAAAACAATTAAAT
1 TTTAAAAAATAAAATTACTAAAACAATTAAAT
*
867153 TACTAAAAAATAAAA-TACTAAAATACAATTAAAAT
1 T-TTAAAAAATAAAATTACT-AAA-ACAATT-AAAT
867188 TTTAAAAA
1 TTTAAAAA
867196 TATATCAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
32 5 0.14
33 14 0.39
34 12 0.33
35 5 0.14
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.31
Consensus pattern (32 bp):
TTTAAAAAATAAAATTACTAAAACAATTAAAT
Found at i:868162 original size:18 final size:18
Alignment explanation
Indices: 868136--868194 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
868126 ATATATCTCC
868136 CTCTCTCCCACTCTCCTT
1 CTCTCTCCCACTCTCCTT
* *
868154 CTCTTTCCCTCTCTCCTT
1 CTCTCTCCCACTCTCCTT
* * *
868172 -TCTCCCCCGCTCTCCCT
1 CTCTCTCCCACTCTCCTT
868189 CTCTCT
1 CTCTCT
868195 ATCTCCCCTG
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
17 13 0.39
18 20 0.61
ACGTcount: A:0.02, C:0.56, G:0.02, T:0.41
Consensus pattern (18 bp):
CTCTCTCCCACTCTCCTT
Found at i:868302 original size:12 final size:12
Alignment explanation
Indices: 868205--868415 Score: 118
Period size: 12 Copynumber: 17.4 Consensus size: 12
868195 ATCTCCCCTG
*
868205 CCCTCTCTCCCT
1 CCCTCTCTCTCT
*
868217 CCCCCTCTCTCT
1 CCCTCTCTCTCT
* *
868229 CATTCTCACTCTCT
1 C--CCTCTCTCTCT
*
868243 CCCGCTCTCTCT
1 CCCTCTCTCTCT
868255 CCCTCTCTCTC-
1 CCCTCTCTCTCT
*
868266 CCTCTCTCTCCCCT
1 CC-CTCTCT-CTCT
868280 ACCCCTCTCTCTCT
1 --CCCTCTCTCTCT
*
868294 CCATCTCTCTCT
1 CCCTCTCTCTCT
* *
868306 CACTCTTTCTCT
1 CCCTCTCTCTCT
*
868318 GCCTTTTTCTCTCTCT
1 -CC---CTCTCTCTCT
*
868334 CCCCCT-TCTCT
1 CCCTCTCTCTCT
*
868345 CCCACTC-C-CT
1 CCCTCTCTCTCT
868355 CCCAT-TCT-TCTT
1 CCC-TCTCTCTC-T
*
868367 CCCTCTCTCCCT
1 CCCTCTCTCTCT
868379 CCC-C-CTCTCT
1 CCCTCTCTCTCT
868389 CCCTCTC-C-CT
1 CCCTCTCTCTCT
*
868399 CCCTCCCTCTCT
1 CCCTCTCTCTCT
868411 CCCTC
1 CCCTC
868416 CCCCTCTCTC
Statistics
Matches: 152, Mismatches: 25, Indels: 44
0.69 0.11 0.20
Matches are distributed among these distances:
10 23 0.15
11 19 0.12
12 76 0.50
13 4 0.03
14 12 0.08
15 8 0.05
16 10 0.07
ACGTcount: A:0.03, C:0.58, G:0.01, T:0.37
Consensus pattern (12 bp):
CCCTCTCTCTCT
Found at i:868334 original size:2 final size:2
Alignment explanation
Indices: 868207--868317 Score: 59
Period size: 2 Copynumber: 56.0 Consensus size: 2
868197 CTCCCCTGCC
* * * * * *
868207 CT CT CT CC CT CC CC CT CT CT CT CAT -T CT CA CT CT CT CC CG CT
1 CT CT CT CT CT CT CT CT CT CT CT C-T CT CT CT CT CT CT CT CT CT
* * * *
868249 CT CT CT CC CT CT CT CT CC CT CT CT CT C- CC CT AC- CC CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT -CT CT CT CT CT
* *
868290 CT CT C- CAT CT CT CT CT CA CT CT TT CT CT
1 CT CT CT C-T CT CT CT CT CT CT CT CT CT CT
868318 GCCTTTTTCT
Statistics
Matches: 83, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
1 4 0.05
2 76 0.92
3 3 0.04
ACGTcount: A:0.05, C:0.56, G:0.01, T:0.39
Consensus pattern (2 bp):
CT
Found at i:868414 original size:44 final size:45
Alignment explanation
Indices: 868325--868415 Score: 123
Period size: 44 Copynumber: 2.0 Consensus size: 45
868315 TCTGCCTTTT
* * *
868325 TCTCTCTCTCCCCCTTCTCTCCCACTCCCTCCCATTCTTCTTCCC
1 TCTCTCCCTCCCCCTTCTCTCCCACTCCCTCCCATCCCTCTTCCC
*
868370 TCTCTCCCTCCCCC-TCTCTCCCTCTCCCTCCC-TCCCTCTCTCCC
1 TCTCTCCCTCCCCCTTCTCTCCCACTCCCTCCCATCCCTCT-TCCC
868414 TC
1 TC
868416 CCCCTCTCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
43 5 0.12
44 23 0.56
45 13 0.32
ACGTcount: A:0.02, C:0.63, G:0.00, T:0.35
Consensus pattern (45 bp):
TCTCTCCCTCCCCCTTCTCTCCCACTCCCTCCCATCCCTCTTCCC
Found at i:868416 original size:12 final size:12
Alignment explanation
Indices: 868181--868423 Score: 78
Period size: 12 Copynumber: 20.4 Consensus size: 12
868171 TTCTCCCCCG
868181 CTCTCCCTCTCTCT
1 CTCTCCCTC-C-CT
*
868195 ATCTCCCCTGCCCT
1 CTCT-CCCT-CCCT
*
868209 CTCTCCCTCCCC
1 CTCTCCCTCCCT
* *
868221 CTCTCTCTCATTCT
1 CTCTCCCTC--CCT
* * *
868235 CACTCTCTCCCG
1 CTCTCCCTCCCT
*
868247 CTCTCTCTCCCT
1 CTCTCCCTCCCT
868259 CTCT--CTCCCT
1 CTCTCCCTCCCT
868269 CTCT--CTCCC-
1 CTCTCCCTCCCT
*
868278 CTAC-CCCTCTCT
1 CT-CTCCCTCCCT
* *
868290 CTCTCCATCTCT
1 CTCTCCCTCCCT
* **
868302 CTCTCACTCTTT
1 CTCTCCCTCCCT
* ***
868314 CTCTGCCTTTTT
1 CTCTCCCTCCCT
* *
868326 CTCTCTCTCCCC
1 CTCTCCCTCCCT
*
868338 CT-TCTCT-CC-
1 CTCTCCCTCCCT
*
868347 CACTCCCTCCCAT
1 CTCTCCCTCCC-T
* *
868360 -TCTTCTTCCCT
1 CTCTCCCTCCCT
868371 CTCTCCCTCCCCCT
1 CTCTCCCT--CCCT
868385 CTCTCCCT--CT
1 CTCTCCCTCCCT
*
868395 CCCTCCCTCCCT
1 CTCTCCCTCCCT
*
868407 CTCTCCCTCCCC
1 CTCTCCCTCCCT
868419 CTCTC
1 CTCTC
868424 TCTGGAATAT
Statistics
Matches: 176, Mismatches: 35, Indels: 38
0.71 0.14 0.15
Matches are distributed among these distances:
9 3 0.02
10 31 0.18
11 13 0.07
12 90 0.51
13 4 0.02
14 29 0.16
15 5 0.03
16 1 0.01
ACGTcount: A:0.03, C:0.58, G:0.01, T:0.37
Consensus pattern (12 bp):
CTCTCCCTCCCT
Found at i:870226 original size:20 final size:21
Alignment explanation
Indices: 870189--870228 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
870179 AAATTAAGTT
870189 AAATGAATTTTAAGATTTTAC
1 AAATGAATTTTAAGATTTTAC
870210 AAATG-ATTTTACA-ATTTTA
1 AAATGAATTTTA-AGATTTTA
870229 TATTCGATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.45
Consensus pattern (21 bp):
AAATGAATTTTAAGATTTTAC
Found at i:870686 original size:64 final size:64
Alignment explanation
Indices: 870444--870669 Score: 319
Period size: 64 Copynumber: 3.5 Consensus size: 64
870434 GAATTAATTG
* * **** *
870444 AACATCGAATGCATTCCATGCACCGATGCATTCTCCATGCATCAATGCACTC-TGAATATTTTCA
1 AACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCAATGCACTCATG-CTATTTTC-
870508 AA
64 -A
* *
870510 AACATCGAATGCATTTGATGCATCGATGCACAAGCCATGCATCAATGCACTCAGGCTATTTTCA
1 AACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCAATGCACTCATGCTATTTTCA
* *
870574 AACATCGAATACATTTCATGCATCGATGCACAAGCCATGCATCGATGCACTCATGCTATTTTCA
1 AACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCAATGCACTCATGCTATTTTCA
870638 AACATCGAATGCATTTCATGCATCGATGCACA
1 AACATCGAATGCATTTCATGCATCGATGCACA
870670 CTTGGTGCAC
Statistics
Matches: 145, Mismatches: 14, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
64 92 0.63
66 52 0.36
67 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (64 bp):
AACATCGAATGCATTTCATGCATCGATGCACAAGCCATGCATCAATGCACTCATGCTATTTTCA
Found at i:876486 original size:24 final size:23
Alignment explanation
Indices: 876458--876538 Score: 96
Period size: 24 Copynumber: 3.6 Consensus size: 23
876448 CATTTAACAA
876458 TGCATCGATGCATCCCTTTGAAT
1 TGCATCGATGCATCCCTTTGAAT
*
876481 GTGCATCGATGCATCCCTATG-A-
1 -TGCATCGATGCATCCCTTTGAAT
* *
876503 TGCACCGATGCATGCC-TTGAAT
1 TGCATCGATGCATCCCTTTGAAT
876525 ATGCATCGATGCAT
1 -TGCATCGATGCAT
876539 AAGACCATGC
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
20 2 0.04
21 15 0.31
23 13 0.27
24 19 0.39
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (23 bp):
TGCATCGATGCATCCCTTTGAAT
Found at i:877260 original size:21 final size:21
Alignment explanation
Indices: 877236--877299 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 21
877226 AAAATCGTCC
877236 TCCCGTTCCTCAACATCCTAA
1 TCCCGTTCCTCAACATCCTAA
**
877257 TCCCGTTCCTCCTCCA-CCTAA
1 TCCCGTTCCT-CAACATCCTAA
*
877278 TCCCGATCCTCAAGC-TCCTAA
1 TCCCGTTCCTCAA-CATCCTAA
877299 T
1 T
877300 GGCTTATTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
20 1 0.03
21 31 0.89
22 3 0.09
ACGTcount: A:0.20, C:0.45, G:0.06, T:0.28
Consensus pattern (21 bp):
TCCCGTTCCTCAACATCCTAA
Found at i:878985 original size:20 final size:21
Alignment explanation
Indices: 878948--878987 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
878938 AAATTAAGTT
878948 AAATGAATTTTAAGATTTTAC
1 AAATGAATTTTAAGATTTTAC
878969 AAATG-ATTTTACA-ATTTTA
1 AAATGAATTTTA-AGATTTTA
878988 TATTCGATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.42, C:0.05, G:0.07, T:0.45
Consensus pattern (21 bp):
AAATGAATTTTAAGATTTTAC
Found at i:879380 original size:64 final size:65
Alignment explanation
Indices: 879203--879365 Score: 231
Period size: 65 Copynumber: 2.5 Consensus size: 65
879193 GAATTCATTG
* * **
879203 AACATCGAATGCATTCCATGCACCGATGCATTCTCCATGCATCGATGCACTCTGAATATTTTCAA
1 AACATCGAATGCATTTCATGCATCGATGCACACTCCATGCATCGATGCACTCTGAATATTTTCAA
* ** *
879268 AACATCGAATGCATTTGATGCATCGATGCACAAGCCATGCATCGATGCACTCATG-CTATTTTC-
1 AACATCGAATGCATTTCATGCATCGATGCACACTCCATGCATCGATGCACTC-TGAATATTTTCA
879331 A
65 A
879332 AACATCGAATGCATTTCATGCATCGATGCACACT
1 AACATCGAATGCATTTCATGCATCGATGCACACT
879366 TGGTGCACCG
Statistics
Matches: 86, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
64 32 0.37
65 52 0.60
66 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (65 bp):
AACATCGAATGCATTTCATGCATCGATGCACACTCCATGCATCGATGCACTCTGAATATTTTCAA
Found at i:888699 original size:32 final size:31
Alignment explanation
Indices: 888630--888737 Score: 85
Period size: 31 Copynumber: 3.5 Consensus size: 31
888620 TTAGGGTCTG
* * * **
888630 AGAGCCTACCCAAGAA-AGTTTCAGGGCCAT
1 AGAGCCTACCTAAGAACAATCTCAGGGCCGC
* *
888660 GGAGCCTACCTAAGAACACATCTTAGGGCCGC
1 AGAGCCTACCTAAGAACA-ATCTCAGGGCCGC
* * * *
888692 GGGGCCTACCCGAA-AATAATCTCAGGGCCGC
1 AGAGCCTA-CCTAAGAACAATCTCAGGGCCGC
888723 AGAGCCTACCTAAGA
1 AGAGCCTACCTAAGA
888738 GTCACGTTAG
Statistics
Matches: 60, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
30 18 0.30
31 20 0.33
32 18 0.30
33 4 0.07
ACGTcount: A:0.31, C:0.30, G:0.25, T:0.15
Consensus pattern (31 bp):
AGAGCCTACCTAAGAACAATCTCAGGGCCGC
Found at i:897585 original size:22 final size:21
Alignment explanation
Indices: 897530--897592 Score: 72
Period size: 22 Copynumber: 3.0 Consensus size: 21
897520 AGACATTTCA
*
897530 ATGAAAGAACTTAACCTTTTG
1 ATGAAAGGACTTAACCTTTTG
* *
897551 ATTAAAAGACTTAACTCTTTTG
1 ATGAAAGGACTTAAC-CTTTTG
* *
897573 ATGAAAGGGCTTAACATTTT
1 ATGAAAGGACTTAACCTTTT
897593 TTTCATGAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
21 16 0.47
22 18 0.53
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.37
Consensus pattern (21 bp):
ATGAAAGGACTTAACCTTTTG
Found at i:900358 original size:21 final size:21
Alignment explanation
Indices: 900334--900373 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
900324 TTTAGATAAA
900334 ATTTATATATTTT-TCTTTAAT
1 ATTTATAT-TTTTATCTTTAAT
*
900355 ATTTTTATTTTTATCTTTA
1 ATTTATATTTTTATCTTTA
900374 TTTTTATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (21 bp):
ATTTATATTTTTATCTTTAAT
Found at i:901157 original size:21 final size:22
Alignment explanation
Indices: 901133--901178 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
901123 GAGAAATGAT
901133 TGAAAG-GTTAAGACCTTTTGA
1 TGAAAGAGTTAAGACCTTTTGA
*
901154 TG-AAGATTTAAGACCTTTTGA
1 TGAAAGAGTTAAGACCTTTTGA
901175 TGAA
1 TGAA
901179 GATATTTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 3 0.14
21 18 0.82
22 1 0.05
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.35
Consensus pattern (22 bp):
TGAAAGAGTTAAGACCTTTTGA
Found at i:901179 original size:21 final size:21
Alignment explanation
Indices: 901140--901181 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
901130 GATTGAAAGG
901140 TTAAGACCTTTTGATGAAGAT
1 TTAAGACCTTTTGATGAAGAT
901161 TTAAGACCTTTTGATGAAGAT
1 TTAAGACCTTTTGATGAAGAT
901182 ATTTGTTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (21 bp):
TTAAGACCTTTTGATGAAGAT
Found at i:904399 original size:14 final size:15
Alignment explanation
Indices: 904372--904400 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
904362 TATTTAATTT
904372 TAAAAAATATATATG
1 TAAAAAATATATATG
904387 TAAAAAATA-ATATG
1 TAAAAAATATATATG
904401 GTTAGTGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (15 bp):
TAAAAAATATATATG
Found at i:908579 original size:23 final size:23
Alignment explanation
Indices: 908539--908611 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
908529 TGGGGTATTA
* * *
908539 CATTTTATTATTCGTGAACATGTT
1 CATTTAATT-TTCATGAATATGTT
*
908563 CATTTAATTTTCATGAATGTGTT
1 CATTTAATTTTCATGAATATGTT
* *
908586 CGTTTATATGTT-ATGAATATGTT
1 CATTTA-ATTTTCATGAATATGTT
908609 CAT
1 CAT
908612 GAACATGTCC
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
23 28 0.70
24 12 0.30
ACGTcount: A:0.26, C:0.10, G:0.14, T:0.51
Consensus pattern (23 bp):
CATTTAATTTTCATGAATATGTT
Found at i:908963 original size:12 final size:13
Alignment explanation
Indices: 908934--908966 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
908924 AATATAAATG
908934 AACGAGCTCATAA
1 AACGAGCTCATAA
908947 AACGAGCTCAT-A
1 AACGAGCTCATAA
908959 AACGAGCT
1 AACGAGCT
908967 TATTTGTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.42, C:0.24, G:0.18, T:0.15
Consensus pattern (13 bp):
AACGAGCTCATAA
Found at i:914414 original size:19 final size:19
Alignment explanation
Indices: 914390--914440 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
914380 CTATATAGTA
914390 GTATCGATACCATTTGAGG
1 GTATCGATACCATTTGAGG
* *
914409 GTATCGGTATCATTTGAGG
1 GTATCGATACCATTTGAGG
*
914428 GTATCAATACCAT
1 GTATCGATACCAT
914441 ATTTTGATTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (19 bp):
GTATCGATACCATTTGAGG
Found at i:932091 original size:12 final size:12
Alignment explanation
Indices: 932074--932116 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
932064 GAGCAAAGGG
932074 AAAGGGTTATGC
1 AAAGGGTTATGC
932086 AAAGGGTTATGC
1 AAAGGGTTATGC
932098 AAAGGGTTATGC
1 AAAGGGTTATGC
932110 AAAGGGT
1 AAAGGGT
932117 GATTAAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.35, C:0.07, G:0.35, T:0.23
Consensus pattern (12 bp):
AAAGGGTTATGC
Found at i:937857 original size:23 final size:25
Alignment explanation
Indices: 937814--937868 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
937804 GAACTCATTC
937814 GGAAAAAAACAGAGAATTTCGAAAA
1 GGAAAAAAACAGAGAATTTCGAAAA
*
937839 GGAAAAATAA-AGAG-A-TTCGAAGA
1 GGAAAAA-AACAGAGAATTTCGAAAA
937862 -GAAAAAA
1 GGAAAAAA
937869 CACACAACCA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
21 1 0.04
22 6 0.21
23 7 0.25
24 1 0.04
25 11 0.39
26 2 0.07
ACGTcount: A:0.62, C:0.05, G:0.22, T:0.11
Consensus pattern (25 bp):
GGAAAAAAACAGAGAATTTCGAAAA
Found at i:938092 original size:21 final size:21
Alignment explanation
Indices: 938066--938112 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
938056 TAAAGGTTCT
*
938066 TGAACACCTTCATAATGCTCC
1 TGAACACCTTCATAATGCACC
938087 TGAACACCTTCATAATGCACC
1 TGAACACCTTCATAATGCACC
938108 TGAAC
1 TGAAC
938113 CATAAAGGGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.11, T:0.26
Consensus pattern (21 bp):
TGAACACCTTCATAATGCACC
Found at i:938630 original size:31 final size:30
Alignment explanation
Indices: 938595--938663 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
938585 GGGTAAGCTA
938595 TGAGGTCCCGA-AGACTTTCTTCGGTAGGCCC
1 TGAGG-CCCGAGA-ACTTTCTTCGGTAGGCCC
* * *
938626 TGAGGCTCGAGAACTTTCTTGGGTAGGCTC
1 TGAGGCCCGAGAACTTTCTTCGGTAGGCCC
*
938656 TCAGGCCC
1 TGAGGCCC
938664 CCAAGATGTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
30 26 0.81
31 6 0.19
ACGTcount: A:0.16, C:0.28, G:0.30, T:0.26
Consensus pattern (30 bp):
TGAGGCCCGAGAACTTTCTTCGGTAGGCCC
Found at i:940772 original size:10 final size:10
Alignment explanation
Indices: 940722--940776 Score: 51
Period size: 10 Copynumber: 5.5 Consensus size: 10
940712 TAGTTGATGC
*
940722 TTGATATTGC
1 TTGATATTGT
940732 TTGAT-TCTGT
1 TTGATAT-TGT
*
940742 TTCATATTGT
1 TTGATATTGT
*
940752 TTGCT-TCTGT
1 TTGATAT-TGT
940762 TTGATATTGT
1 TTGATATTGT
940772 TTGAT
1 TTGAT
940777 TCTACTTGAT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
9 2 0.06
10 32 0.89
11 2 0.06
ACGTcount: A:0.15, C:0.09, G:0.18, T:0.58
Consensus pattern (10 bp):
TTGATATTGT
Found at i:940785 original size:20 final size:20
Alignment explanation
Indices: 940719--940789 Score: 88
Period size: 20 Copynumber: 3.5 Consensus size: 20
940709 CAATAGTTGA
*
940719 TGCTTGATATTGCTTGATTC
1 TGCTTGATATTGTTTGATTC
* * *
940739 TGTTTCATATTGTTTGCTTC
1 TGCTTGATATTGTTTGATTC
*
940759 TGTTTGATATTGTTTGATTC
1 TGCTTGATATTGTTTGATTC
*
940779 TACTTGATATT
1 TGCTTGATATT
940790 TGTAAGGGTT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.15, C:0.11, G:0.17, T:0.56
Consensus pattern (20 bp):
TGCTTGATATTGTTTGATTC
Found at i:940908 original size:23 final size:23
Alignment explanation
Indices: 940882--940936 Score: 92
Period size: 23 Copynumber: 2.4 Consensus size: 23
940872 TTGAATGCAG
*
940882 GATGCTTGCTGAATTGATGCAAT
1 GATGCTTGCTGAATTGATACAAT
*
940905 GATGCTTGCTGAATTGATACATT
1 GATGCTTGCTGAATTGATACAAT
940928 GATGCTTGC
1 GATGCTTGC
940937 CGATTTCTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (23 bp):
GATGCTTGCTGAATTGATACAAT
Found at i:941795 original size:16 final size:16
Alignment explanation
Indices: 941776--941814 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
941766 TGAGTCAATT
*
941776 ACAGGTCAGATTCATA
1 ACAGGTCAGATTCAAA
* *
941792 ACAGGTCAGGTTGAAA
1 ACAGGTCAGATTCAAA
941808 ACAGGTC
1 ACAGGTC
941815 GGGTAATACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.21
Consensus pattern (16 bp):
ACAGGTCAGATTCAAA
Found at i:947486 original size:2 final size:2
Alignment explanation
Indices: 947481--947562 Score: 146
Period size: 2 Copynumber: 41.0 Consensus size: 2
947471 GTATATATGC
947481 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
947523 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT AG AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
947563 TTAAATCATG
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 76 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:948506 original size:3 final size:3
Alignment explanation
Indices: 948485--948525 Score: 64
Period size: 3 Copynumber: 13.3 Consensus size: 3
948475 TGTAAACATG
*
948485 TAA TAA AAA TAA TTAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA T
948526 TTTAATATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:948914 original size:40 final size:39
Alignment explanation
Indices: 948861--948945 Score: 100
Period size: 40 Copynumber: 2.2 Consensus size: 39
948851 TATCAAGGAT
*
948861 TGACACGACTCCTACATAATGAGGA-GATCTGGTCGGGTGA
1 TGACACGACTCCTACATAATGAGGATG-GCTGGTCGGG-GA
** * *
948901 TGACACGGTTCCTACGTGATGAGGATGGCTGGTCGGGGA
1 TGACACGACTCCTACATAATGAGGATGGCTGGTCGGGGA
948940 TGACAC
1 TGACAC
948946 TGCTCATACT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
39 8 0.21
40 30 0.77
41 1 0.03
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.22
Consensus pattern (39 bp):
TGACACGACTCCTACATAATGAGGATGGCTGGTCGGGGA
Found at i:949122 original size:46 final size:44
Alignment explanation
Indices: 949059--949220 Score: 140
Period size: 46 Copynumber: 3.8 Consensus size: 44
949049 AGATCTAGTC
* *
949059 AGGTGATGACACAGTTCCTATGTGATGAGGACGACAGGTCATCTAT
1 AGGTGATAACACAGTTCCTACGTGATGAGGACGACAGGTCATC--T
* * * * *
949105 AGGTGATAACACGGTTCCTACATGATGAGGACGTCTGGTTATCT
1 AGGTGATAACACAGTTCCTACGTGATGAGGACGACAGGTCATCT
* *
949149 AGG-G-TAGACACAGTTCCTACGTGATGAGGA-AATCAGG---TCG
1 AGGTGATA-ACACAGTTCCTACGTGATGAGGACGA-CAGGTCATCT
* *
949189 AGG-GATGACACGGTTCCTACGTGATGAGGACG
1 AGGTGATAACACAGTTCCTACGTGATGAGGACG
949221 TTTGGCCATC
Statistics
Matches: 96, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
40 28 0.29
41 1 0.01
42 2 0.02
43 25 0.26
44 4 0.04
46 36 0.38
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (44 bp):
AGGTGATAACACAGTTCCTACGTGATGAGGACGACAGGTCATCT
Found at i:949177 original size:43 final size:42
Alignment explanation
Indices: 949066--949221 Score: 140
Period size: 40 Copynumber: 3.6 Consensus size: 42
949056 GTCAGGTGAT
* *
949066 GACACAGTTCCTATGTGATGAGGACGACAGGTCATCTATAGGTGATA
1 GACACAGTTCCTACGTGATGAGGACGTCAGGT-ATC--TAGG-G-TA
* * *
949113 -ACACGGTTCCTACATGATGAGGACGTCTGGTTATCTAGGGTA
1 GACACAGTTCCTACGTGATGAGGACGTCAGG-TATCTAGGGTA
** *
949155 GACACAGTTCCTACGTGATGAGGAAATCAGG--TCGAGGG-A
1 GACACAGTTCCTACGTGATGAGGACGTCAGGTATCTAGGGTA
*
949194 TGACACGGTTCCTACGTGATGAGGACGT
1 -GACACAGTTCCTACGTGATGAGGACGT
949222 TTGGCCATCT
Statistics
Matches: 92, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
39 1 0.01
40 30 0.33
42 2 0.02
43 26 0.28
44 4 0.04
46 28 0.30
47 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (42 bp):
GACACAGTTCCTACGTGATGAGGACGTCAGGTATCTAGGGTA
Done.