genome.fa.s7986.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007986.1 Hibiscus syriacus cultivar Beakdansim tig00110431_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45923

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
775--849	3	25.0	3	79	0	78	34	5	34	25	1.79
2439--2481	22	1.9	23	90	4	70	30	11	13	44	1.80
5598--5661	23	2.8	23	87	0	92	35	6	20	37	1.78
5598--5670	23	3.2	23	82	7	85	34	5	20	39	1.76
6027--6090	23	2.8	23	87	0	92	35	6	20	37	1.78
6027--6099	23	3.2	23	82	7	85	34	5	20	39	1.76
6456--6519	23	2.8	23	87	0	92	35	6	20	37	1.78
6456--6528	23	3.2	23	82	7	85	34	5	20	39	1.76
6882--6945	23	2.8	23	87	0	92	35	6	20	37	1.78
6882--6954	23	3.2	23	82	7	85	34	5	20	39	1.76
5500--7187	429	3.9	429	97	1	3205	39	8	12	39	1.74
7219--7268	25	2.0	25	88	3	75	34	8	18	40	1.79
7516--7552	18	2.1	18	89	0	56	32	5	10	51	1.60
7508--7554	24	2.0	24	86	0	67	34	4	14	46	1.64
7814--7932	39	3.1	39	97	0	220	48	20	14	16	1.80
8332--8393	21	2.8	23	85	7	83	35	6	20	37	1.79
8356--8406	21	2.5	21	87	9	70	35	1	21	41	1.65
8404--8440	19	1.9	19	88	0	56	27	16	10	45	1.80
11588--11625	16	2.3	17	86	13	53	42	0	0	57	0.98
11596--11633	16	2.4	16	82	4	51	47	0	2	50	1.15
13153--13203	23	2.2	23	100	0	102	41	11	7	39	1.71
25491--25518	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30904--30988	29	3.0	29	91	1	127	47	4	14	34	1.65
30918--30988	14	4.9	15	77	6	83	47	5	14	32	1.67
30923--30972	15	3.4	15	83	5	75	44	4	14	38	1.63
30977--31060	34	2.5	34	98	0	159	39	10	14	35	1.81
31255--31386	31	4.4	29	69	17	81	43	0	5	50	1.24
31216--31386	89	1.9	87	82	9	211	45	0	4	50	1.20
31393--31461	19	3.6	19	73	21	63	47	1	1	49	1.19
31582--31639	23	2.4	24	82	8	73	50	0	0	50	1.00
32339--32387	24	2.0	25	88	4	73	48	2	0	48	1.12
32397--32456	20	3.1	19	79	11	68	48	1	0	50	1.11
32445--32518	23	3.2	23	94	0	121	56	0	1	41	1.07
32424--32506	31	2.5	33	78	13	89	57	0	0	42	0.98
32605--32651	13	3.6	13	78	16	53	51	4	0	44	1.21
32581--32663	23	3.9	22	76	12	68	49	2	0	48	1.14
32795--32855	22	2.7	23	76	14	63	49	0	1	49	1.10

Tables:   1

The End!