Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007987.1 Hibiscus syriacus cultivar Beakdansim tig00110432_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 872063
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 5 of 5
Found at i:701724 original size:22 final size:22
Alignment explanation
Indices: 701697--701740 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
701687 GATGGAGATA
701697 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
701719 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
701741 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:702020 original size:20 final size:20
Alignment explanation
Indices: 701933--702019 Score: 129
Period size: 20 Copynumber: 4.3 Consensus size: 20
701923 GTATTATCTT
*
701933 GTTGCGAAAGTCAGTATTGC
1 GTTGCGAAAGTCAGTATCGC
* *
701953 GTTGCGAAATTAAGTATCGC
1 GTTGCGAAAGTCAGTATCGC
701973 GTTGCGAAAGTCAGTATCGC
1 GTTGCGAAAGTCAGTATCGC
* *
701993 GTTGCGATAGTCAGTATCAC
1 GTTGCGAAAGTCAGTATCGC
702013 GTTGCGA
1 GTTGCGA
702020 TTTTCCAAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 60 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (20 bp):
GTTGCGAAAGTCAGTATCGC
Found at i:702040 original size:21 final size:21
Alignment explanation
Indices: 702014--702063 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
702004 CAGTATCACG
*
702014 TTGCGATTTTCCAAATTCGCA
1 TTGCGATTTTACAAATTCGCA
**
702035 TTGCGA-TTTACTTATTCGCA
1 TTGCGATTTTACAAATTCGCA
702055 TTGCGATTT
1 TTGCGATTT
702064 GGGAAAATCG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.44
Consensus pattern (21 bp):
TTGCGATTTTACAAATTCGCA
Found at i:702102 original size:21 final size:22
Alignment explanation
Indices: 702050--702102 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
702040 ATTTACTTAT
*
702050 TCGCATTGCG-ATTTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
702071 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
702092 TCGCATTGCGA
1 TCGCATTGCGA
702103 TAGTTATAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 23 0.88
22 3 0.12
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:702847 original size:6 final size:6
Alignment explanation
Indices: 702836--702889 Score: 108
Period size: 6 Copynumber: 9.0 Consensus size: 6
702826 ATCTTAAAAA
702836 CATTCC CATTCC CATTCC CATTCC CATTCC CATTCC CATTCC CATTCC
1 CATTCC CATTCC CATTCC CATTCC CATTCC CATTCC CATTCC CATTCC
702884 CATTCC
1 CATTCC
702890 AATGACGTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 48 1.00
ACGTcount: A:0.17, C:0.50, G:0.00, T:0.33
Consensus pattern (6 bp):
CATTCC
Found at i:703302 original size:12 final size:12
Alignment explanation
Indices: 703285--703309 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
703275 ACCTATAATC
703285 TTAAATTACAAA
1 TTAAATTACAAA
703297 TTAAATTACAAA
1 TTAAATTACAAA
703309 T
1 T
703310 GAAACATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (12 bp):
TTAAATTACAAA
Found at i:708373 original size:16 final size:18
Alignment explanation
Indices: 708348--708398 Score: 56
Period size: 16 Copynumber: 3.1 Consensus size: 18
708338 CGAGTGGATG
708348 AATATATTAT-TT-TTTT
1 AATATATTATATTATTTT
*
708364 AATATTTTATATTATTTT
1 AATATATTATATTATTTT
*
708382 AATA-ATTA-AATATTTT
1 AATATATTATATTATTTT
708398 A
1 A
708399 CAATTTTATC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 17 0.57
17 5 0.17
18 8 0.27
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
AATATATTATATTATTTT
Found at i:710157 original size:20 final size:22
Alignment explanation
Indices: 710134--710186 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
710124 TATTTATTTT
*
710134 TTATTTTTAAAAT-TTTTAA-A
1 TTATTTTTAAAATATTTAAAGA
* *
710154 TTATATTTATAATATTTAAAGA
1 TTATTTTTAAAATATTTAAAGA
710176 TT-TTTTTAAAA
1 TTATTTTTAAAA
710187 AATATACATA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
20 11 0.42
21 12 0.46
22 3 0.12
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TTATTTTTAAAATATTTAAAGA
Found at i:711787 original size:18 final size:18
Alignment explanation
Indices: 711766--711800 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
711756 TGAACTTCGA
711766 ATAAATATTTTGTAATTT
1 ATAAATATTTTGTAATTT
* *
711784 ATAACTATTTTTTAATT
1 ATAAATATTTTGTAATT
711801 AACTTTCAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (18 bp):
ATAAATATTTTGTAATTT
Found at i:728597 original size:22 final size:20
Alignment explanation
Indices: 728555--728598 Score: 52
Period size: 22 Copynumber: 2.1 Consensus size: 20
728545 TAAATGTGGA
**
728555 AAAATAAAAAATTTAGTTTT
1 AAAATAAAAAATTTAAATTT
728575 AAAATATAAAAATATTAAATTT
1 AAAATA-AAAAAT-TTAAATTT
728597 AA
1 AA
728599 TTTTTTCTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 6 0.30
22 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAATAAAAAATTTAAATTT
Found at i:730576 original size:21 final size:21
Alignment explanation
Indices: 730551--730610 Score: 93
Period size: 21 Copynumber: 2.9 Consensus size: 21
730541 CGAGGGTTAT
* *
730551 AGTGGTCCTTCGAGATAATAC
1 AGTGGTCATTCGAGACAATAC
*
730572 AGTGGTCATTCGGGACAATAC
1 AGTGGTCATTCGAGACAATAC
730593 AGTGGTCATTCGAGACAA
1 AGTGGTCATTCGAGACAA
730611 ATTTCATATG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (21 bp):
AGTGGTCATTCGAGACAATAC
Found at i:732132 original size:30 final size:31
Alignment explanation
Indices: 732089--732159 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
732079 ACATAGTTTA
*
732089 TATCACGTAGACATATCA-TTTCCATACCTT
1 TATCACATAGACATATCATTTTCCATACCTT
*
732119 TTTCACATAGACATATCATTTTCCATACCTT
1 TATCACATAGACATATCATTTTCCATACCTT
732150 TATCACATAG
1 TATCACATAG
732160 CTCATATAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
30 16 0.43
31 21 0.57
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.38
Consensus pattern (31 bp):
TATCACATAGACATATCATTTTCCATACCTT
Found at i:732229 original size:25 final size:25
Alignment explanation
Indices: 732201--732262 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
732191 CATAATGCAT
732201 ATAATATGAATTCATG-TCATGTATC
1 ATAATATGAATT-ATGATCATGTATC
* *
732226 ATAATATGAAATGTGATCATGTATC
1 ATAATATGAATTATGATCATGTATC
*
732251 AAAATATTGAAT
1 ATAATA-TGAAT
732263 CTAGACTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
24 2 0.06
25 25 0.81
26 4 0.13
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (25 bp):
ATAATATGAATTATGATCATGTATC
Found at i:733305 original size:20 final size:20
Alignment explanation
Indices: 733261--733578 Score: 174
Period size: 20 Copynumber: 15.6 Consensus size: 20
733251 AATGACCAAT
*
733261 AAAATCGCAACGCGATATA-
1 AAAATCGCAACGCGATTTAG
733280 AAAATCGCAACGCGATTTAG
1 AAAATCGCAACGCGATTTAG
** ***
733300 AAAATCGCAACGTTAAAAAG
1 AAAATCGCAACGCGATTTAG
**
733320 AAAATCGCAACG-G-TCAAAAG
1 AAAATCGCAACGCGAT--TTAG
* **
733340 AAAATCGCAACGCGAGCTTCC
1 AAAATCGCAACGCGA-TTTAG
**
733361 AAGTTCGCAACGCGATTTAGAAG
1 AAAATCGCAACGCGATTT---AG
* * *
733384 AAAATCGCAATGCGATTGAT
1 AAAATCGCAACGCGATTTAG
* * *
733404 AGAATCGCAATGCGATTTAT
1 AAAATCGCAACGCGATTTAG
* * *
733424 AGAATCGCAATGCGATTGAG
1 AAAATCGCAACGCGATTTAG
* * *
733444 AGAGTCGCAACGCGATCTAGAAG
1 AAAATCGCAACGCGAT-T--TAG
* * *
733467 AAAATCGCAATGCGCTTGAG
1 AAAATCGCAACGCGATTTAG
* * * *
733487 AGAATCGCAATGCGACTGAG
1 AAAATCGCAACGCGATTTAG
* * * *
733507 AGAATCACAATGCGATTTAT
1 AAAATCGCAACGCGATTTAG
* * *
733527 AGAATCGCAATGCGATTGAG
1 AAAATCGCAACGCGATTTAG
*
733547 AGAATCGCAACGCGATTTAG
1 AAAATCGCAACGCGATTTAG
733567 AAAATCGCAACG
1 AAAATCGCAACG
733579 TTAAAAAGAA
Statistics
Matches: 239, Mismatches: 48, Indels: 23
0.77 0.15 0.07
Matches are distributed among these distances:
19 18 0.08
20 177 0.74
21 15 0.06
22 1 0.00
23 28 0.12
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.19
Consensus pattern (20 bp):
AAAATCGCAACGCGATTTAG
Found at i:733439 original size:40 final size:40
Alignment explanation
Indices: 733386--733576 Score: 229
Period size: 40 Copynumber: 4.7 Consensus size: 40
733376 TTTAGAAGAA
* * *
733386 AATCGCAATGCGATTGATAGAATCGCAATGCGATTTATAG
1 AATCGCAATGCGATTGAGAGAATCGCAATGCGATTGAGAG
* * *
733426 AATCGCAATGCGATTGAGAGAGTCGCAACGCGATCTAGAAGAA
1 AATCGCAATGCGATTGAGAGAATCGCAATGCGAT-T-G-AGAG
* *
733469 AATCGCAATGCGCTTGAGAGAATCGCAATGCGACTGAGAG
1 AATCGCAATGCGATTGAGAGAATCGCAATGCGATTGAGAG
* * *
733509 AATCACAATGCGATTTATAGAATCGCAATGCGATTGAGAG
1 AATCGCAATGCGATTGAGAGAATCGCAATGCGATTGAGAG
* * *
733549 AATCGCAACGCGATTTAGAAAATCGCAA
1 AATCGCAATGCGATTGAGAGAATCGCAA
733577 CGTTAAAAAG
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
40 93 0.73
41 2 0.02
42 1 0.01
43 32 0.25
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.21
Consensus pattern (40 bp):
AATCGCAATGCGATTGAGAGAATCGCAATGCGATTGAGAG
Found at i:733476 original size:83 final size:82
Alignment explanation
Indices: 733365--733576 Score: 266
Period size: 83 Copynumber: 2.6 Consensus size: 82
733355 GCTTCCAAGT
* * * *
733365 TCGCAACGCGATTTAGAAGAAAATCGCAATGCGATTGATAGAATCGCAATGCGATTTATAGAATC
1 TCGCAACGCGA-TTAGAAGAAAATCGCAATGCGATTGAGAGAATCGCAATGCGACTGAGAGAATC
* *
733430 GCAATGCGATTGAGAGAG
65 ACAATGCGATTGAGAGAA
*
733448 TCGCAACGCGATCTAGAAGAAAATCGCAATGCGCTTGAGAGAATCGCAATGCGACTGAGAGAATC
1 TCGCAACGCGAT-TAGAAGAAAATCGCAATGCGATTGAGAGAATCGCAATGCGACTGAGAGAATC
* *
733513 ACAATGCGATTTATAGAA
65 ACAATGCGATTGAGAGAA
* * * * *
733531 TCGCAATGCGATT-G-AGAGAATCGCAACGCGATTTAGAAAATCGCAA
1 TCGCAACGCGATTAGAAGAAAATCGCAATGCGATTGAGAGAATCGCAA
733577 CGTTAAAAAG
Statistics
Matches: 113, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
80 27 0.24
81 1 0.01
82 2 0.02
83 83 0.73
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.21
Consensus pattern (82 bp):
TCGCAACGCGATTAGAAGAAAATCGCAATGCGATTGAGAGAATCGCAATGCGACTGAGAGAATCA
CAATGCGATTGAGAGAA
Found at i:733588 original size:20 final size:20
Alignment explanation
Indices: 733565--733608 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
733555 AACGCGATTT
*
733565 AGAAAATCGCAACGTTAAAA
1 AGAAAATCGCAACGGTAAAA
*
733585 AGAAAATCGCAACGGTCAAA
1 AGAAAATCGCAACGGTAAAA
733605 AGAA
1 AGAA
733609 TAGTTAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.55, C:0.16, G:0.18, T:0.11
Consensus pattern (20 bp):
AGAAAATCGCAACGGTAAAA
Found at i:733697 original size:6 final size:6
Alignment explanation
Indices: 733686--733723 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
733676 GACACGTATT
733686 ACCACG ACCACG ACCACG ACCACG ACCACG ACC-CG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACCACG ACC
733724 CGAGACGAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.32, C:0.53, G:0.16, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:734440 original size:6 final size:6
Alignment explanation
Indices: 734419--734455 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
734409 TCTCGTCTCG
734419 GGTCG- GGTCG- GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGTCGT GGT
734456 AATACGTGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 10 0.32
6 21 0.68
ACGTcount: A:0.00, C:0.16, G:0.54, T:0.30
Consensus pattern (6 bp):
GGTCGT
Found at i:734558 original size:20 final size:20
Alignment explanation
Indices: 734533--734576 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
734523 TTTTTAACTA
*
734533 TTCTTTTGACCGTTGCGATT
1 TTCTTTTGAACGTTGCGATT
*
734553 TTCTTTTTAACGTTGCGATT
1 TTCTTTTGAACGTTGCGATT
734573 TTCT
1 TTCT
734577 AAATCGCGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.11, C:0.18, G:0.16, T:0.55
Consensus pattern (20 bp):
TTCTTTTGAACGTTGCGATT
Found at i:734586 original size:20 final size:20
Alignment explanation
Indices: 734563--734901 Score: 157
Period size: 20 Copynumber: 16.6 Consensus size: 20
734553 TTCTTTTTAA
734563 CGTTGCGATTTTCTAAATCG
1 CGTTGCGATTTTCTAAATCG
* *
734583 CGTTGCGATTCTCTCAATCG
1 CGTTGCGATTTTCTAAATCG
* * *
734603 CATTGCGATTCTATAAATCG
1 CGTTGCGATTTTCTAAATCG
* * * *
734623 CATTGCGATTCTCTCAGTCG
1 CGTTGCGATTTTCTAAATCG
* * * *
734643 CATTGCGATTCTCTCAGTCG
1 CGTTGCGATTTTCTAAATCG
* *
734663 CATTGCGATTTTCTTCTAGATCG
1 CGTTGCGA--TT-TTCTAAATCG
* * *
734686 CGTTGCGACTCTCTCAATCG
1 CGTTGCGATTTTCTAAATCG
* * *
734706 CATTGCGATTCTATAAATCG
1 CGTTGCGATTTTCTAAATCG
* * * *
734726 CATTGCGATTCTATCAATCG
1 CGTTGCGATTTTCTAAATCG
*
734746 CATTGCGATTTTCTTCTAAATCG
1 CGTTGCGA--TT-TTCTAAATCG
** ** *
734769 CGTTGCGAACTTGGAAGCTCG
1 CGTTGCGATTTTCTAA-ATCG
** ** *
734790 CGTTGCGAACTTGGAAGCTCG
1 CGTTGCGATTTTCTAA-ATCG
* *
734811 CGTTGCGATTTTCT--TTTG
1 CGTTGCGATTTTCTAAATCG
* *
734829 ACCGTTGCGATTTTCT--TTTG
1 --CGTTGCGATTTTCTAAATCG
734849 ACCGTTGCGATTTTCTAAATCG
1 --CGTTGCGATTTTCTAAATCG
* *
734871 CGTTGCGATTTT-GATATCG
1 CGTTGCGATTTTCTAAATCG
734890 CGTTGCGATTTT
1 CGTTGCGATTTT
734902 ATTGGTCATT
Statistics
Matches: 267, Mismatches: 41, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
18 2 0.01
19 17 0.06
20 180 0.67
21 35 0.13
22 6 0.02
23 27 0.10
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (20 bp):
CGTTGCGATTTTCTAAATCG
Found at i:734609 original size:40 final size:40
Alignment explanation
Indices: 734565--734755 Score: 238
Period size: 40 Copynumber: 4.7 Consensus size: 40
734555 CTTTTTAACG
* * *
734565 TTGCGATTTTCTAAATCGCGTTGCGATTCTCTCAATCGCA
1 TTGCGATTCTCTCAATCGCATTGCGATTCTCTCAATCGCA
* * *
734605 TTGCGATTCTATAAATCGCATTGCGATTCTCTCAGTCGCA
1 TTGCGATTCTCTCAATCGCATTGCGATTCTCTCAATCGCA
* * *
734645 TTGCGATTCTCTCAGTCGCATTGCGATTTTCTTCTAGATCGCG
1 TTGCGATTCTCTCAATCGCATTGCGATTCTC-TC-A-ATCGCA
* * *
734688 TTGCGACTCTCTCAATCGCATTGCGATTCTATAAATCGCA
1 TTGCGATTCTCTCAATCGCATTGCGATTCTCTCAATCGCA
*
734728 TTGCGATTCTATCAATCGCATTGCGATT
1 TTGCGATTCTCTCAATCGCATTGCGATT
734756 TTCTTCTAAA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
40 94 0.72
41 3 0.02
42 2 0.02
43 31 0.24
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (40 bp):
TTGCGATTCTCTCAATCGCATTGCGATTCTCTCAATCGCA
Found at i:734712 original size:83 final size:82
Alignment explanation
Indices: 734565--734776 Score: 275
Period size: 83 Copynumber: 2.6 Consensus size: 82
734555 CTTTTTAACG
* * * * * *
734565 TTGCGATTTTCTAAATCGCGTTGCGATTCTC-TC-AATCGCATTGCGATTCTATAAATCGCATTG
1 TTGCGATTCTCTCAATCGCATTGCGATTTTCTTCTAATCGCGTTGCGACTCTATAAATCGCATTG
* * *
734628 CGATTCTCTCAGTCGCA
66 CGATTCTATAAATCGCA
* * *
734645 TTGCGATTCTCTCAGTCGCATTGCGATTTTCTTCTAGATCGCGTTGCGACTCTCTCAATCGCATT
1 TTGCGATTCTCTCAATCGCATTGCGATTTTCTTCTA-ATCGCGTTGCGACTCTATAAATCGCATT
734710 GCGATTCTATAAATCGCA
65 GCGATTCTATAAATCGCA
*
734728 TTGCGATTCTATCAATCGCATTGCGATTTTCTTCTAAATCGCGTTGCGA
1 TTGCGATTCTCTCAATCGCATTGCGATTTTCTTCT-AATCGCGTTGCGA
734777 ACTTGGAAGC
Statistics
Matches: 114, Mismatches: 14, Indels: 5
0.86 0.11 0.04
Matches are distributed among these distances:
80 26 0.23
81 2 0.02
82 1 0.01
83 84 0.74
84 1 0.01
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (82 bp):
TTGCGATTCTCTCAATCGCATTGCGATTTTCTTCTAATCGCGTTGCGACTCTATAAATCGCATTG
CGATTCTATAAATCGCA
Found at i:734792 original size:21 final size:21
Alignment explanation
Indices: 734766--734818 Score: 106
Period size: 21 Copynumber: 2.5 Consensus size: 21
734756 TTCTTCTAAA
734766 TCGCGTTGCGAACTTGGAAGC
1 TCGCGTTGCGAACTTGGAAGC
734787 TCGCGTTGCGAACTTGGAAGC
1 TCGCGTTGCGAACTTGGAAGC
734808 TCGCGTTGCGA
1 TCGCGTTGCGA
734819 TTTTCTTTTG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.17, C:0.25, G:0.34, T:0.25
Consensus pattern (21 bp):
TCGCGTTGCGAACTTGGAAGC
Found at i:734891 original size:19 final size:20
Alignment explanation
Indices: 734851--734901 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
734841 TTCTTTTGAC
*
734851 CGTTGCGATTTTCTAAATCG
1 CGTTGCGATTTTCGAAATCG
*
734871 CGTTGCGATTTT-GATATCG
1 CGTTGCGATTTTCGAAATCG
734890 CGTTGCGATTTT
1 CGTTGCGATTTT
734902 ATTGGTCATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.16, C:0.18, G:0.24, T:0.43
Consensus pattern (20 bp):
CGTTGCGATTTTCGAAATCG
Found at i:735610 original size:24 final size:23
Alignment explanation
Indices: 735582--735626 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
735572 AATTGTTCAT
735582 GGTATTGTTCATTACTATTCATAC
1 GGTATTGTTCA-TACTATTCATAC
*
735606 GGTATTGTTCATACTGTTCAT
1 GGTATTGTTCATACTATTCAT
735627 GAAAACGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.47
Consensus pattern (23 bp):
GGTATTGTTCATACTATTCATAC
Found at i:736286 original size:7 final size:8
Alignment explanation
Indices: 736249--736288 Score: 73
Period size: 8 Copynumber: 5.1 Consensus size: 8
736239 TTTAAATTAT
736249 TTTTAAAA
1 TTTTAAAA
736257 TTTTAAAA
1 TTTTAAAA
736265 TTTTAAAA
1 TTTTAAAA
736273 TTTTAAAA
1 TTTTAAAA
736281 -TTTAAAA
1 TTTTAAAA
736288 T
1 T
736289 CTATTAGTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 7 0.23
8 24 0.77
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
TTTTAAAA
Found at i:737523 original size:17 final size:17
Alignment explanation
Indices: 737501--737533 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
737491 AAAATTGGGC
737501 TGCTGGTTGATGGGAGT
1 TGCTGGTTGATGGGAGT
737518 TGCTGGTTGATGGGAG
1 TGCTGGTTGATGGGAG
737534 CTGCAGACTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.48, T:0.33
Consensus pattern (17 bp):
TGCTGGTTGATGGGAGT
Found at i:738101 original size:29 final size:30
Alignment explanation
Indices: 738046--738102 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 30
738036 ATATGTTGGT
* *
738046 TTTATAAATTATTTTTTAAAATAATATTTA
1 TTTATAAATTATTTCTCAAAATAATATTTA
* *
738076 TTTAT-AATTATTTCTCATAATGATATT
1 TTTATAAATTATTTCTCAAAATAATATT
738103 ATTATTGTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
29 18 0.78
30 5 0.22
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.56
Consensus pattern (30 bp):
TTTATAAATTATTTCTCAAAATAATATTTA
Found at i:739022 original size:29 final size:30
Alignment explanation
Indices: 738983--739039 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
738973 TATATGTTGG
* *
738983 TTTATAAATTATTTTTTAAAATGATATTTA
1 TTTATAAATTATTTCTCAAAATGATATTTA
*
739013 TTTAT-AATTATTTCTCATAATGATATT
1 TTTATAAATTATTTCTCAAAATGATATT
739040 ATTATTGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (30 bp):
TTTATAAATTATTTCTCAAAATGATATTTA
Found at i:739979 original size:28 final size:29
Alignment explanation
Indices: 739921--739976 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
739911 ATATGTTGGT
*
739921 TTTATAAATTATTTTTAAAATGATATTTA
1 TTTATAAATTATTTTCAAAATGATATTTA
*
739950 TTTAT-AATTATTTCTCATAATGATATT
1 TTTATAAATTATTT-TCAAAATGATATT
739977 ATTATTGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.55
Consensus pattern (29 bp):
TTTATAAATTATTTTCAAAATGATATTTA
Found at i:740895 original size:29 final size:30
Alignment explanation
Indices: 740857--740913 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
740847 ATATGTTGGT
* *
740857 TTTATAAATTATTTTTTAAAATGATATTTA
1 TTTATAAATTATTTCTCAAAATGATATTTA
*
740887 TTTAT-AATTATTTCTCATAATGATATT
1 TTTATAAATTATTTCTCAAAATGATATT
740914 ATTATTGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (30 bp):
TTTATAAATTATTTCTCAAAATGATATTTA
Found at i:741825 original size:28 final size:28
Alignment explanation
Indices: 741793--741850 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
741783 ATATGTTGGT
*
741793 TTTATAAATTATTT-TTAAAATGATATTA
1 TTTAT-AATTATTTCTCAAAATGATATTA
*
741821 TTTATAATTATTTCTCATAATGATATTA
1 TTTATAATTATTTCTCAAAATGATATTA
741849 TT
1 TT
741851 ATTGTCACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 8 0.30
28 19 0.70
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.55
Consensus pattern (28 bp):
TTTATAATTATTTCTCAAAATGATATTA
Found at i:742763 original size:29 final size:30
Alignment explanation
Indices: 742725--742781 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
742715 ATATGTTGGT
* *
742725 TTTATAAATTATTTTTTAAAATGATATTTA
1 TTTATAAATTATTTCTCAAAATGATATTTA
*
742755 TTTAT-AATTATTTCTCATAATGATATT
1 TTTATAAATTATTTCTCAAAATGATATT
742782 ATTATTGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (30 bp):
TTTATAAATTATTTCTCAAAATGATATTTA
Found at i:743598 original size:939 final size:939
Alignment explanation
Indices: 737383--745813 Score: 16248
Period size: 939 Copynumber: 9.0 Consensus size: 939
737373 GAAACAGGAG
737383 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
1 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
* * *
737448 GATAACAATCCTGGACAGACTGCCTACTACAAATAGGTTGAACAAAATTGGGCTGCTGGTTGATG
66 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATCAAAATT-GG--GC---------
*
737513 GGAGTTGCTGGTTGATGGGAGCTGCAGACTCTATTGTGTTTTTCCTGAGACTAGGAGTCATCTGT
119 -----TGCTGGTTGATGGGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGT
*
737578 TTTTTGAGTTCATCTTCTTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGA
179 TTTTTGAGTTCATCTTCTTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGG
** *
737643 TCAGTAGGGAACTGGAAATGTGAGTTTAATTGGGCTGTTGCTCGACTTAAAGGGAAATTTTTAGT
244 TCAGTAGGGCTCTGGAAATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGT
737708 GGTTTACTTCTTTAAAATAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATA
309 GGTTTACTTCTTTAAAATAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATA
737773 GGCAGTTTAGGTGTAAATAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGT
374 GGCAGTTTAGGTGTAAATAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGT
737838 AAAGGTGTATAGGAAAGTTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAA
439 AAAGGTGTATAGGAAAGTTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAA
* * *
737903 TTCAGTCCTCCTAGAAGGTTGTTTGGTTTTGTATTGGTTGTAGCAACATTTTTTCTGTTGCTTCT
504 TTCAGTCCTCCTATAAGGTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCT
*
737968 TGGATAATAAAAATGAAATTAGTTAACCAAAAAAA-TTATAATAATAATTAAAACTTAAAATTTT
569 TGGATAATAAAAATGAAATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTT
*
738032 ATCTATATGTTGGTTTTATAAATTATTTTTTAAAATAATATTTATTTATAATTATTTCTCATAAT
634 ATCTATATGTTGGTTTTATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAAT
738097 GATATTATTATTGTCACATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACT
699 GATATTATTATTGTCACATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACT
738162 TATTTTACATGATAATCTAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTG
764 TATTTTACATGATAATCTAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTG
* *
738227 GTCAATCGTAACTTTAAGAAGTTTGAATAAACTTAAAACATTTACATGAGATAATGCGTTTTAGA
829 GCCAATCGTAACTTTAAGAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGA
738292 AAATTCTATATGAAGTATAAGTATAAGTTTGTATACCGAATGAGAT
894 AAATTCTATATGAAGTATAAGTATAAGTTTGTATACCGAATGAGAT
738338 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
1 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
*
738403 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATAAAAATTGGGCTGCTGGTTGATG
66 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATCAAAATTGGGCTGCTGGTTGATG
738468 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
131 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
* **
738533 CTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGAACTGGAA
196 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGCTCTGGAA
738598 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
261 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
738663 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
326 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
738728 TAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
391 TAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
738793 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
456 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
738858 GTTGTTTGGTTTTGTATTGGTTGTAGCAACG-TTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
521 GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
738922 ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGG-TTT
586 ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
738986 ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
651 ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
739051 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
716 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
*
739116 TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGTCAATCGTAACTTTAA
781 TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGCCAATCGTAACTTTAA
739181 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
846 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
739246 TAAGTATAAGTTTGTATACCGAATGAGAT
911 TAAGTATAAGTTTGTATACCGAATGAGAT
739275 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
1 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
739340 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATC-AAATTGGGCTGCTGGTTGATG
66 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATCAAAATTGGGCTGCTGGTTGATG
739404 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
131 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
*
739469 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACATGTCAGTAGGGCTCTGGAA
196 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGCTCTGGAA
739534 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
261 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
739599 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
326 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
*
739664 TAGACACATTAGTGATATAGTGGAAATAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
391 TAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
739729 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
456 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
739794 GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
521 GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
739859 ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
586 ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
739924 ATAAATTA-TTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
651 ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
739988 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
716 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
740053 TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGCCAATCGTAACTTTAA
781 TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGCCAATCGTAACTTTAA
740118 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
846 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
740183 TAAGTATAAGTTTGTATACCGAATGAGAT
911 TAAGTATAAGTTTGTATACCGAATGAGAT
740212 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
1 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
740277 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATCAAAATTGGGCTGCTGGTTGATG
66 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATCAAAATTGGGCTGCTGGTTGATG
740342 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
131 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
**
740407 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGAACTGGAA
196 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGCTCTGGAA
740472 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
261 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
740537 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
326 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
740602 TAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
391 TAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
740667 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
456 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
740732 GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATG-A
521 GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
740796 ATTAGTTAACCAAAAAAATTTATAATAATAACT-AAACTTAAAATTTTATCTATATGTTGGTTTT
586 ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
740860 ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
651 ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
740925 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
716 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
*
740990 TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGTCAATCGTAACTTTAA
781 TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGCCAATCGTAACTTTAA
741055 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
846 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
741120 TAAGTATAAGTTTGTATACCGAATGAGAT
911 TAAGTATAAGTTTGTATACCGAATGAGAT
741149 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
1 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
741214 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATCAAAATTGGGCTGCTGGTTGATG
66 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATCAAAATTGGGCTGCTGGTTGATG
741279 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
131 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
741344 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGCTCTGGAA
196 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGCTCTGGAA
741409 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
261 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
741474 TAGCTTGGTGTGCTTACATATA-TGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
326 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
*
741538 TAGACACATTAGTGATATAGTGGAAATAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
391 TAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
741603 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
456 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
741668 GTTGTTTGGTTTTGTATTGGTTGTAGCAACG-TTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
521 GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
741732 ATTAGTTAACC-AAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
586 ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
741796 ATAAATTA-TTTTTAAAATGATA-TTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
651 ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
741859 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
716 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
741924 TAAACAAC--AT-ATAAAAATTTTATCATTCGGTATAATGTGTATTTGGCCAATCGTAAC-TTAA
781 TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGCCAATCGTAACTTTAA
741985 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
846 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
742050 TAAGTATAAGTTTGTATACCGAATGAGAT
911 TAAGTATAAGTTTGTATACCGAATGAGAT
742079 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
1 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
742144 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATCAAAATTGGGCTGCTGGTTGATG
66 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATCAAAATTGGGCTGCTGGTTGATG
742209 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
131 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
*
742274 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACATGTCAGTAGGGCTCTGGAA
196 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGCTCTGGAA
742339 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
261 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
742404 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
326 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
*
742469 TAGACACATTAGTGATATAGTGGAAATAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
391 TAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
742534 TTATTA-GAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
456 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
742598 GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
521 GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
742663 ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
586 ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
742728 ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
651 ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
742793 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
716 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
742858 TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGCCAATCGTAACTTTAA
781 TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGCCAATCGTAACTTTAA
*
742923 GATGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
846 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
742988 TAAGTATAAGTTTGTATACCGAATGAGAT
911 TAAGTATAAGTTTGTATACCGAATGAGAT
743017 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
1 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
*
743082 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATAAAAATTGGGCTGCTGGTTGATG
66 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATCAAAATTGGGCTGCTGGTTGATG
743147 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
131 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
**
743212 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGAACTGGAA
196 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGCTCTGGAA
743277 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
261 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
743342 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
326 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
743407 TAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
391 TAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
743472 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
456 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
743537 GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
521 GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
743602 ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
586 ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
743667 ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
651 ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
743732 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
716 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
*
743797 TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGTCAATCGTAACTTTAA
781 TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGCCAATCGTAACTTTAA
743862 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
846 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
743927 TAAGTATAAGTTTGTATACCGAATGAGAT
911 TAAGTATAAGTTTGTATACCGAATGAGAT
743956 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
1 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
744021 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATCAAAATTGGGCTGCTGGTTGATG
66 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATCAAAATTGGGCTGCTGGTTGATG
744086 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
131 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
744151 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGCTCTGGAA
196 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGCTCTGGAA
744216 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
261 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
744281 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
326 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
*
744346 TAGACACATTAGTGATATAGTGGAAATAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
391 TAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
744411 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
456 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
744476 GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
521 GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
744541 ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
586 ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
744606 ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
651 ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
744671 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
716 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
744736 TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGCCAATCGTAACTTTAA
781 TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGCCAATCGTAACTTTAA
744801 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
846 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
744866 TAAGTATAAGTTTGTATACCGAATGAGAT
911 TAAGTATAAGTTTGTATACCGAATGAGAT
744895 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
1 AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
*
744960 GATAACAATTCTGGACAAACAGCCTACTACAAATAGGTTGATCAAAATTGGGCTGCTGGTTGATG
66 GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATCAAAATTGGGCTGCTGGTTGATG
745025 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
131 GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
745090 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGCTCTGGAA
196 TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGCTCTGGAA
745155 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
261 ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
*
745220 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTATGTGTAAA
326 TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
745285 TAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
391 TAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
745350 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
456 TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
745415 GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
521 GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
745480 ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
586 ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
745545 ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
651 ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
745610 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
716 ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
*
745675 TAAACAACATATAATAAAAAATTTATCATTCGGTATAATGTGTATTTGGCCAATCGTAACTTTAA
781 TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGCCAATCGTAACTTTAA
745740 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
846 GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
*
745805 TAAATATAA
911 TAAGTATAA
745814 TGTAAAGTTT
Statistics
Matches: 7410, Mismatches: 49, Indels: 50
0.99 0.01 0.01
Matches are distributed among these distances:
930 533 0.07
931 203 0.03
932 63 0.01
933 14 0.00
934 228 0.03
935 66 0.01
936 731 0.10
937 1633 0.22
938 1502 0.20
939 2323 0.31
952 2 0.00
954 2 0.00
955 110 0.01
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (939 bp):
AAGGTGGTATGGCATAAGTTTGTATGGTTTCCTTTGAATGTTCACAATCATTCTATAGTTACTTG
GATAACAATTCTGGACAAACTGCCTACTACAAATAGGTTGATCAAAATTGGGCTGCTGGTTGATG
GGAGCTGCAGACTCTATTGTGTTTTGCCTGAGACTAGGAGTCATCTGTTTTTTGAGTTCATCTTC
TTAAAGGCAGTGTGGAAGGCTATTCTTTGCCTGTGCAAAATTGACAGGTCAGTAGGGCTCTGGAA
ATGTGAGTTTAATTGGGCTATTGCTCGACTTAAAGGGAAATTTTTAGTGGTTTACTTCTTTAAAA
TAGCTTGGTGTGCTTACATATATTGTATATGGGAGTAGAGAAATTATAGGCAGTTTAGGTGTAAA
TAGACACATTAGTGATATAGTGGAAACAATTAAAGGGATTGTTAGGGTAAAGGTGTATAGGAAAG
TTATTATGAGTGTTGTGATTAACCATGATCTCTGTATAGTTTGGGGAATTCAGTCCTCCTATAAG
GTTGTTTGGTTTTGTATTGGTTGTAGCAACGTTTTTTCTGTTGTTTCTTGGATAATAAAAATGAA
ATTAGTTAACCAAAAAAATTTATAATAATAACTAAAACTTAAAATTTTATCTATATGTTGGTTTT
ATAAATTATTTTTTAAAATGATATTTATTTATAATTATTTCTCATAATGATATTATTATTGTCAC
ATATAATAAAATGCGTCTATACATCACATCTTTTGTAATATGTATACTTATTTTACATGATAATC
TAAACAACATATAATAAAAATTTTATCATTCGGTATAATGTGTATTTGGCCAATCGTAACTTTAA
GAAGTTTGAATAAACTTAAAACATTTACGTGAGATAATGCGTTTTAGAAAATTCTATATGAAGTA
TAAGTATAAGTTTGTATACCGAATGAGAT
Found at i:743702 original size:29 final size:30
Alignment explanation
Indices: 743664--743720 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
743654 ATATGTTGGT
* *
743664 TTTATAAATTATTTTTTAAAATGATATTTA
1 TTTATAAATTATTTCTCAAAATGATATTTA
*
743694 TTTAT-AATTATTTCTCATAATGATATT
1 TTTATAAATTATTTCTCAAAATGATATT
743721 ATTATTGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (30 bp):
TTTATAAATTATTTCTCAAAATGATATTTA
Found at i:744641 original size:29 final size:30
Alignment explanation
Indices: 744603--744659 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
744593 ATATGTTGGT
* *
744603 TTTATAAATTATTTTTTAAAATGATATTTA
1 TTTATAAATTATTTCTCAAAATGATATTTA
*
744633 TTTAT-AATTATTTCTCATAATGATATT
1 TTTATAAATTATTTCTCAAAATGATATT
744660 ATTATTGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (30 bp):
TTTATAAATTATTTCTCAAAATGATATTTA
Found at i:745580 original size:29 final size:30
Alignment explanation
Indices: 745542--745598 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
745532 ATATGTTGGT
* *
745542 TTTATAAATTATTTTTTAAAATGATATTTA
1 TTTATAAATTATTTCTCAAAATGATATTTA
*
745572 TTTAT-AATTATTTCTCATAATGATATT
1 TTTATAAATTATTTCTCAAAATGATATT
745599 ATTATTGTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (30 bp):
TTTATAAATTATTTCTCAAAATGATATTTA
Found at i:750314 original size:15 final size:16
Alignment explanation
Indices: 750286--750315 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
750276 AACTTATATA
750286 CGTAACTGTTTAAATC
1 CGTAACTGTTTAAATC
750302 CGTAACT-TTTAAAT
1 CGTAACTGTTTAAAT
750316 AAAACATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (16 bp):
CGTAACTGTTTAAATC
Found at i:764268 original size:18 final size:17
Alignment explanation
Indices: 764232--764283 Score: 50
Period size: 19 Copynumber: 2.9 Consensus size: 17
764222 ATTACAAAAT
* *
764232 AAATTAAATAAATACTA
1 AAATTAAAAAAATAATA
764249 AAATTAAACAAAATAATAA
1 AAATTAAA-AAAATAAT-A
*
764268 AAATTACAAATAATAA
1 AAATTA-AAAAAATAA
764284 AGAAAAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 8 0.28
18 6 0.21
19 13 0.45
20 2 0.07
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.25
Consensus pattern (17 bp):
AAATTAAAAAAATAATA
Found at i:765734 original size:40 final size:40
Alignment explanation
Indices: 765679--765828 Score: 138
Period size: 40 Copynumber: 3.5 Consensus size: 40
765669 GTTGAACAAA
765679 TTCTTCTCATTATGAACTTATTTTACCTCTGTTGGATGAG
1 TTCTTCTCATTATGAACTTATTTTACCTCTGTTGGATGAG
* ** * **
765719 TTCTTCTCATTATGAACTCTCCACTGGAAATCTTGAACTAAGGTTGAACAAG
1 TTCTTCTCATTATGAACT-T--A-T-----T-TT-ACCT-CTGTTGGATGAG
765771 TTCTTCTCATTATGAACTTATTTTACCTCTGTTGGATGAG
1 TTCTTCTCATTATGAACTTATTTTACCTCTGTTGGATGAG
765811 TTCTTCTCATTATGAACT
1 TTCTTCTCATTATGAACT
765829 CTCCACTGGA
Statistics
Matches: 86, Mismatches: 12, Indels: 24
0.70 0.10 0.20
Matches are distributed among these distances:
40 43 0.50
41 4 0.05
42 2 0.02
43 2 0.02
44 1 0.01
48 1 0.01
49 2 0.02
50 2 0.02
51 4 0.05
52 25 0.29
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.43
Consensus pattern (40 bp):
TTCTTCTCATTATGAACTTATTTTACCTCTGTTGGATGAG
Found at i:765762 original size:92 final size:92
Alignment explanation
Indices: 765578--766002 Score: 615
Period size: 92 Copynumber: 4.7 Consensus size: 92
765568 AATCACCCAA
* * * *
765578 GTTGAACAAATTCTTCTCATTATGAACATATTCTCCCTC-ATCGGATGGGTTCTTCTCATTATGA
1 GTTGAACAAATTCTTCTCATTATGAACTTATTCTCCCTCTGTTGGATGAGTTCTTCTCATTATGA
* * * *
765642 ACTCCCCGCTGTAAATATTGATGC-AAG
66 ACTCCCCACTGGAAATCTTGA-ACTAAG
* *
765669 GTTGAACAAATTCTTCTCATTATGAACTTATTTTACCTCTGTTGGATGAGTTCTTCTCATTATGA
1 GTTGAACAAATTCTTCTCATTATGAACTTATTCTCCCTCTGTTGGATGAGTTCTTCTCATTATGA
*
765734 ACTCTCCACTGGAAATCTTGAACTAAG
66 ACTCCCCACTGGAAATCTTGAACTAAG
* * *
765761 GTTGAACAAGTTCTTCTCATTATGAACTTATTTTACCTCTGTTGGATGAGTTCTTCTCATTATGA
1 GTTGAACAAATTCTTCTCATTATGAACTTATTCTCCCTCTGTTGGATGAGTTCTTCTCATTATGA
*
765826 ACTCTCCACTGGAAATCTTGAACTAAG
66 ACTCCCCACTGGAAATCTTGAACTAAG
* *
765853 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTCCCT-TGTTGGATGAGTTCTTCTCATTATGA
1 GTTGAACAAATTCTTCTCATTATGAACTTATTCTCCCTCTGTTGGATGAGTTCTTCTCATTATGA
* * *
765917 ACTCCCCACTGGAAATCTTAAACCAAT
66 ACTCCCCACTGGAAATCTTGAACTAAG
* *
765944 GTTGAACAAATTCTTCTCATTATGTACTTCTTCTCCCT-TGTTGGATGAGTTCTTCTCAT
1 GTTGAACAAATTCTTCTCATTATGAACTTATTCTCCCTCTGTTGGATGAGTTCTTCTCAT
766003 CATGTTTTCA
Statistics
Matches: 311, Mismatches: 21, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
91 143 0.46
92 168 0.54
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (92 bp):
GTTGAACAAATTCTTCTCATTATGAACTTATTCTCCCTCTGTTGGATGAGTTCTTCTCATTATGA
ACTCCCCACTGGAAATCTTGAACTAAG
Found at i:765915 original size:183 final size:184
Alignment explanation
Indices: 765574--766002 Score: 616
Period size: 183 Copynumber: 2.4 Consensus size: 184
765564 ATGGAATCAC
* * * *
765574 CCAA-GTTGAACAAATTCTTCTCATTATGAACATATTCTCCCTC-ATCGGATGGGTTCTTCTCAT
1 CCAAGGTTGAACAAATTCTTCTCATTATGAACTTATTCTCCCTCTGTTGGATGAGTTCTTCTCAT
* * * *
765637 TATGAACTCCCCGCTGTAAATATTGATGCAAGGTTGAACAAATTCTTCTCATTATGAACTTATTT
66 TATGAACTCCCCACTGGAAATATTGATACAAGGTTGAACAAATTCTTCTCATTATGAACTTATTC
* *
765702 TACCTCTGTTGGATGAGTTCTTCTCATTATGAACTCTCCACTGGAAATCTTGAA
131 TACCTCTGTTGGATGAGTTCTTCTCATTATGAACTCCCCACTGGAAATCTTAAA
* * * *
765756 CTAAGGTTGAACAAGTTCTTCTCATTATGAACTTATTTTACCTCTGTTGGATGAGTTCTTCTCAT
1 CCAAGGTTGAACAAATTCTTCTCATTATGAACTTATTCTCCCTCTGTTGGATGAGTTCTTCTCAT
* * * *
765821 TATGAACTCTCCACTGGAAATCTTGA-ACTAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTT
66 TATGAACTCCCCACTGGAAATATTGATAC-AAGGTTGAACAAATTCTTCTCATTATGAACTTATT
*
765885 CTCCCT-TGTTGGATGAGTTCTTCTCATTATGAACTCCCCACTGGAAATCTTAAA
130 CTACCTCTGTTGGATGAGTTCTTCTCATTATGAACTCCCCACTGGAAATCTTAAA
* * *
765939 CCAATGTTGAACAAATTCTTCTCATTATGTACTTCTTCTCCCT-TGTTGGATGAGTTCTTCTCAT
1 CCAAGGTTGAACAAATTCTTCTCATTATGAACTTATTCTCCCTCTGTTGGATGAGTTCTTCTCAT
766003 CATGTTTTCA
Statistics
Matches: 218, Mismatches: 26, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
182 24 0.11
183 118 0.54
184 76 0.35
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.38
Consensus pattern (184 bp):
CCAAGGTTGAACAAATTCTTCTCATTATGAACTTATTCTCCCTCTGTTGGATGAGTTCTTCTCAT
TATGAACTCCCCACTGGAAATATTGATACAAGGTTGAACAAATTCTTCTCATTATGAACTTATTC
TACCTCTGTTGGATGAGTTCTTCTCATTATGAACTCCCCACTGGAAATCTTAAA
Found at i:775219 original size:14 final size:15
Alignment explanation
Indices: 775200--775229 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
775190 CCGTGGGTAG
775200 CGGGTAC-GAACTGT
1 CGGGTACTGAACTGT
775214 CGGGTACTGAACTGT
1 CGGGTACTGAACTGT
775229 C
1 C
775230 TGAGTGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.23
Consensus pattern (15 bp):
CGGGTACTGAACTGT
Found at i:778169 original size:18 final size:17
Alignment explanation
Indices: 778133--778196 Score: 56
Period size: 19 Copynumber: 3.5 Consensus size: 17
778123 ATTACAAAAT
* *
778133 AAATTAAATAAATACTA
1 AAATTAAAAAAATAATA
778150 AAATTAAACAAAATAATAA
1 AAATTAAA-AAAATAAT-A
* *
778169 AAATTACAAATAATAAAGA
1 AAATTA-AAAAAAT-AATA
778188 AAATTAAAA
1 AAATTAAAA
778197 TACAAAGATC
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
17 8 0.21
18 9 0.23
19 18 0.46
20 4 0.10
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (17 bp):
AAATTAAAAAAATAATA
Found at i:781295 original size:21 final size:21
Alignment explanation
Indices: 781269--781366 Score: 87
Period size: 21 Copynumber: 4.7 Consensus size: 21
781259 ATCAGTTTCC
781269 AAAATCGCAACGCGATTATTG
1 AAAATCGCAACGCGATTATTG
* *
781290 AAAATCGCAATGCGA-TAGT-
1 AAAATCGCAACGCGATTATTG
** *
781309 ACAAATTCGCATTGCGATT-TTCC
1 A-AAA-TCGCAACGCGATTATT-G
*
781332 AAAATCGCAACGCGAATA-TG
1 AAAATCGCAACGCGATTATTG
781352 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
781367 ACACATAAAT
Statistics
Matches: 63, Mismatches: 8, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
19 1 0.02
20 21 0.33
21 36 0.57
22 4 0.06
23 1 0.02
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (21 bp):
AAAATCGCAACGCGATTATTG
Found at i:781357 original size:20 final size:20
Alignment explanation
Indices: 781333--781526 Score: 219
Period size: 20 Copynumber: 9.7 Consensus size: 20
781323 CGATTTTCCA
** *
781333 AAATCGCAACGCGAATATGA
1 AAATCGCAACGCGAATCCGT
*
781353 AAATCGCAACGCGAA-CACAT
1 AAATCGCAACGCGAATC-CGT
*
781373 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
*
781393 AAATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
* **
781413 AAATCGCAACGCGTATGGGT
1 AAATCGCAACGCGAATCCGT
* *
781433 AAATCGCAATGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
* *
781453 ATATCGCAACGCGTATCCGT
1 AAATCGCAACGCGAATCCGT
* *
781473 AAATCGCAACGAGAATCTGT
1 AAATCGCAACGCGAATCCGT
**
781493 AAATCGCAACGATAATCCGT
1 AAATCGCAACGCGAATCCGT
781513 AAATCGCAACGCGA
1 AAATCGCAACGCGA
781527 TATTTAAAGC
Statistics
Matches: 151, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
20 150 0.99
21 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.20, T:0.19
Consensus pattern (20 bp):
AAATCGCAACGCGAATCCGT
Found at i:781946 original size:33 final size:33
Alignment explanation
Indices: 781907--781977 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
781897 TTCACTTAGA
* *
781907 TTTCATTTCGCGTTACGATTCTGTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTCCGAT
* *
781940 TTTCATTTCGCGTTGCTATTCTCTCGTTCCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTCCGAT
781973 TTTCA
1 TTTCA
781978 AGTTAGTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.11, C:0.24, G:0.17, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTCCGAT
Found at i:782114 original size:41 final size:38
Alignment explanation
Indices: 782050--782166 Score: 136
Period size: 41 Copynumber: 3.1 Consensus size: 38
782040 TTCAATTTGC
* *
782050 AGAAGAGTCGCAACGAGATAAATGAAAATCGCAACGAG
1 AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
*
782088 AGAATGACTGTCGCAACGAGAGAAATGACAATCGCAACGAG
1 AGAAT-A--GTCGCAACGAGAGAAATGAAAATCGCAACGAG
*
782129 AG-A-A-TCGCAAC--GCGAAATGAAAATCGCAACGAG
1 AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
782162 AGAAT
1 AGAAT
782167 CGCAACGCGA
Statistics
Matches: 69, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
33 22 0.32
34 1 0.01
35 7 0.10
38 5 0.07
39 1 0.01
40 1 0.01
41 32 0.46
ACGTcount: A:0.45, C:0.18, G:0.26, T:0.11
Consensus pattern (38 bp):
AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
Found at i:782130 original size:21 final size:21
Alignment explanation
Indices: 782057--782132 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
782047 TGCAGAAGAG
* *
782057 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGAGAAATGACAA
**
782078 TCGCAACGAGAG-AATGACTG
1 TCGCAACGAGAGAAATGACAA
782098 TCGCAACGAGAGAAATGACAA
1 TCGCAACGAGAGAAATGACAA
782119 TCGCAACGAGAGAA
1 TCGCAACGAGAGAA
782133 TCGCAACGCG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
20 17 0.35
21 31 0.65
ACGTcount: A:0.45, C:0.18, G:0.25, T:0.12
Consensus pattern (21 bp):
TCGCAACGAGAGAAATGACAA
Found at i:782136 original size:14 final size:14
Alignment explanation
Indices: 782117--782173 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
782107 GAGAAATGAC
782117 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
782131 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
782150 AATCGCAACGAGAG
1 AATCGCAACGAGAG
782164 AATCGCAACG
1 AATCGCAACG
782174 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:782154 original size:33 final size:33
Alignment explanation
Indices: 782109--782189 Score: 135
Period size: 33 Copynumber: 2.5 Consensus size: 33
782099 CGCAACGAGA
*
782109 GAAATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
782142 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
**
782175 GAAACCAAAATCGCA
1 GAAATGAAAATCGCA
782190 TTGCGATTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.46, C:0.23, G:0.22, T:0.09
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:782207 original size:19 final size:19
Alignment explanation
Indices: 782185--782282 Score: 72
Period size: 19 Copynumber: 5.7 Consensus size: 19
782175 GAAACCAAAA
*
782185 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
782204 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* *
782218 TCTCGTTGCGATTGTCATT
1 TCGCGTTGCGATTTTCATT
782237 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* * *
782251 TCTCGTTGCGATTGTCATC
1 TCGCGTTGCGATTTTCATT
782270 TCGCGTTGCGATT
1 TCGCGTTGCGATT
782283 CTCTCGTTGC
Statistics
Matches: 61, Mismatches: 8, Indels: 20
0.69 0.09 0.22
Matches are distributed among these distances:
14 20 0.33
16 4 0.07
17 5 0.08
19 32 0.52
ACGTcount: A:0.10, C:0.24, G:0.23, T:0.42
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:782226 original size:14 final size:14
Alignment explanation
Indices: 782207--782296 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
782197 TTTCATTTCG
782207 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
782221 CGTTGCGATTGTCATTTCG
1 CGTTGCGA-T-TC---TCT
782240 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
782254 CGTTGCGATTGTCATCT
1 CGTTGCGA-T-TC-TCT
782271 CGCGTTGCGATTCTCT
1 --CGTTGCGATTCTCT
782287 CGTTGCGATT
1 CGTTGCGATT
782297 TTCATTTCAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 2 0.03
16 7 0.11
17 7 0.11
18 2 0.03
19 18 0.28
ACGTcount: A:0.09, C:0.26, G:0.24, T:0.41
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:782236 original size:33 final size:33
Alignment explanation
Indices: 782190--782304 Score: 203
Period size: 33 Copynumber: 3.5 Consensus size: 33
782180 CAAAATCGCA
*
782190 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTGTCATTTCGCGTTGCGATTCTCTCG
782223 TTGCGATTGTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTGTCATTTCGCGTTGCGATTCTCTCG
*
782256 TTGCGATTGTCATCTCGCGTTGCGATTCTCTCG
1 TTGCGATTGTCATTTCGCGTTGCGATTCTCTCG
*
782289 TTGCGATTTTCATTTC
1 TTGCGATTGTCATTTC
782305 AACCAAAAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.44
Consensus pattern (33 bp):
TTGCGATTGTCATTTCGCGTTGCGATTCTCTCG
Found at i:784160 original size:93 final size:93
Alignment explanation
Indices: 784001--784472 Score: 912
Period size: 93 Copynumber: 5.1 Consensus size: 93
783991 TAGATTGCTT
*
784001 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
784066 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
784094 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
784159 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
784187 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
784252 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
*
784280 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTATAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
784345 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
784373 AGTAAATTTGTTCGGTTGCTGCCAA-T-TGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
784436 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
784464 AGTAAATTT
1 AGTAAATTT
784473 ATCCATTCAA
Statistics
Matches: 376, Mismatches: 3, Indels: 2
0.99 0.01 0.01
Matches are distributed among these distances:
91 73 0.19
92 1 0.00
93 302 0.80
ACGTcount: A:0.22, C:0.12, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:784556 original size:19 final size:19
Alignment explanation
Indices: 784516--784643 Score: 116
Period size: 19 Copynumber: 7.3 Consensus size: 19
784506 TAGTTTACTT
* *
784516 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
784536 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
784555 TCGCAACGCGAAA-TGAAA
1 TCGCAACGCGAAACCAAAA
*
784573 TCGCAA--CG--A-CAGAA
1 TCGCAACGCGAAACCAAAA
784587 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
*
784606 TCGCAA--CG--A-CAAGA
1 TCGCAACGCGAAACCAAAA
784620 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
784639 TCGCA
1 TCGCA
784644 TTGCGATTTT
Statistics
Matches: 88, Mismatches: 10, Indels: 21
0.74 0.08 0.18
Matches are distributed among these distances:
14 19 0.22
15 1 0.01
16 6 0.07
17 2 0.02
18 11 0.12
19 36 0.41
20 13 0.15
ACGTcount: A:0.45, C:0.29, G:0.17, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:784612 original size:33 final size:32
Alignment explanation
Indices: 784552--784643 Score: 141
Period size: 33 Copynumber: 2.8 Consensus size: 32
784542 CGCGAAACCA
**
784552 AAATCGCAACGCGAAA-TGAAATCGCAACGAC
1 AAATCGCAACGCGAAACCAAAATCGCAACGAC
784583 AGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 A-AATCGCAACGCGAAACCAAAATCGCAACGAC
784616 AAGATCGCAACGCGAAACCAAAATCGCA
1 AA-ATCGCAACGCGAAACCAAAATCGCA
784644 TTGCGATTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
31 1 0.02
32 16 0.29
33 39 0.70
ACGTcount: A:0.46, C:0.28, G:0.18, T:0.08
Consensus pattern (32 bp):
AAATCGCAACGCGAAACCAAAATCGCAACGAC
Found at i:784661 original size:19 final size:19
Alignment explanation
Indices: 784639--784772 Score: 119
Period size: 19 Copynumber: 7.6 Consensus size: 19
784629 GAAACCAAAA
*
784639 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
784658 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
784674 T--CGTTGCGA-TTTCATT
1 TCGCGTTGCGATTTTCATT
* *
784690 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
784706 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
784723 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
*
784742 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
784762 TCGTGTTGCGA
1 TCGCGTTGCGA
784773 AAGTAAACTA
Statistics
Matches: 95, Mismatches: 10, Indels: 19
0.77 0.08 0.15
Matches are distributed among these distances:
14 15 0.16
15 3 0.03
16 11 0.12
17 8 0.08
18 7 0.07
19 39 0.41
20 12 0.13
ACGTcount: A:0.11, C:0.19, G:0.24, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:784680 original size:14 final size:14
Alignment explanation
Indices: 784661--784716 Score: 67
Period size: 14 Copynumber: 3.7 Consensus size: 14
784651 TTTCATTTCG
784661 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
784675 CGTTGCGATTTCATTT
1 CGTTGCGA-TTC-TTT
*
784691 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
784707 CGTTGCGATT
1 CGTTGCGATT
784717 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
14 16 0.43
15 3 0.08
16 9 0.24
17 3 0.08
18 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.45
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:784725 original size:33 final size:33
Alignment explanation
Indices: 784644--784735 Score: 159
Period size: 32 Copynumber: 2.8 Consensus size: 33
784634 CAAAATCGCA
*
784644 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
*
784677 TTGCGA-TTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
784709 TTGCGATTTTCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
784736 TTGGTTTCGC
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 30 0.55
33 25 0.45
ACGTcount: A:0.11, C:0.21, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTGTCG
Found at i:786861 original size:19 final size:19
Alignment explanation
Indices: 786837--786955 Score: 185
Period size: 19 Copynumber: 6.5 Consensus size: 19
786827 AAAATTGACT
786837 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
786856 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
786875 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
786894 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
786908 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
786927 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
786947 ATCGCAATG
1 ATCGCAATG
786956 GGAGAATCGC
Statistics
Matches: 92, Mismatches: 2, Indels: 11
0.88 0.02 0.10
Matches are distributed among these distances:
14 10 0.11
15 1 0.01
16 2 0.02
17 2 0.02
18 1 0.01
19 58 0.63
20 18 0.20
ACGTcount: A:0.45, C:0.17, G:0.23, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:786916 original size:33 final size:36
Alignment explanation
Indices: 786837--786955 Score: 163
Period size: 33 Copynumber: 3.2 Consensus size: 36
786827 AAAATTGACT
786837 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAAATCGCAA-GCG-AATGAAA
*
786875 ATCGCAATGCGAAATGAAAATCGCAA-CG-A-GAGA
1 ATCGCAATGCGAAATGAAAATCGCAAGCGAATGAAA
786908 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAA
1 ATCGCAATGCGAAATGAAAATCGCAA-GC-G-AATGAAA
786947 ATCGCAATG
1 ATCGCAATG
786956 GGAGAATCGC
Statistics
Matches: 73, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
33 29 0.40
34 1 0.01
35 1 0.01
36 3 0.04
38 27 0.37
39 12 0.16
ACGTcount: A:0.45, C:0.17, G:0.23, T:0.15
Consensus pattern (36 bp):
ATCGCAATGCGAAATGAAAATCGCAAGCGAATGAAA
Found at i:786985 original size:53 final size:53
Alignment explanation
Indices: 786855--786972 Score: 211
Period size: 53 Copynumber: 2.2 Consensus size: 53
786845 GCGAAATGAA
786855 AATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAG
1 AATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAG
* *
786907 AATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAATGGGAG
1 AATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAG
786960 AATCGCAATGCGA
1 AATCGCAATGCGA
786973 TTTTAATTTC
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
52 30 0.48
53 33 0.52
ACGTcount: A:0.44, C:0.17, G:0.25, T:0.14
Consensus pattern (53 bp):
AATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAG
Found at i:786990 original size:19 final size:19
Alignment explanation
Indices: 786962--787110 Score: 139
Period size: 19 Copynumber: 8.6 Consensus size: 19
786952 AATGGGAGAA
* *
786962 TCGCAATGCGATTTTAATT
1 TCGCATTGCGATTTTCATT
*
786981 TCGCATTGCGA--TT-ATC
1 TCGCATTGCGATTTTCATT
786997 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
787014 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
787033 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
787049 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
787066 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
787082 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
787099 TCCGCATTGCGA
1 T-CGCATTGCGA
787111 AATGTAATGG
Statistics
Matches: 107, Mismatches: 7, Indels: 31
0.74 0.05 0.21
Matches are distributed among these distances:
14 18 0.17
16 21 0.20
17 19 0.18
18 2 0.02
19 41 0.38
20 6 0.06
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.44
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:787025 original size:52 final size:52
Alignment explanation
Indices: 786962--787078 Score: 207
Period size: 52 Copynumber: 2.2 Consensus size: 52
786952 AATGGGAGAA
*
786962 TCGCAATGCGATTTTAATTTCGCATTGCGATTATCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTAATTTCGCATTGCGATTATCTCGTTGCGATTTTCATT
* *
787014 TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTAATTTCGCATTGCGATTATCTCGTTGCGATTTTCATT
787066 TCGCATTGCGATT
1 TCGCATTGCGATT
787079 CTCTCGTTGC
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.16, C:0.21, G:0.18, T:0.44
Consensus pattern (52 bp):
TCGCATTGCGATTTTAATTTCGCATTGCGATTATCTCGTTGCGATTTTCATT
Found at i:787056 original size:33 final size:33
Alignment explanation
Indices: 787019--787110 Score: 175
Period size: 33 Copynumber: 2.8 Consensus size: 33
787009 TCATTTCGCA
787019 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
787052 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
787085 TTGCGATTTTCATTTCCGCATTGCGA
1 TTGCGATTTTCATTT-CGCATTGCGA
787111 AATGTAATGG
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
33 48 0.83
34 10 0.17
ACGTcount: A:0.13, C:0.24, G:0.18, T:0.45
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTCTCTCG
Found at i:787057 original size:14 final size:14
Alignment explanation
Indices: 787038--787092 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
787028 TCATTTCGCA
787038 TTGCGATTCTCTCG
1 TTGCGATTCTCTCG
*
787052 TTGCGATTTTCATTTCG
1 TTGCGA--TTC-TCTCG
787069 CATTGCGATTCTCTCG
1 --TTGCGATTCTCTCG
787085 TTGCGATT
1 TTGCGATT
787093 TTCATTTCCG
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 14 0.41
16 7 0.21
17 7 0.21
19 6 0.18
ACGTcount: A:0.11, C:0.24, G:0.20, T:0.45
Consensus pattern (14 bp):
TTGCGATTCTCTCG
Found at i:787193 original size:19 final size:19
Alignment explanation
Indices: 787169--787266 Score: 143
Period size: 19 Copynumber: 5.4 Consensus size: 19
787159 AAAATTGACT
787169 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
787188 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
787207 ATCGCAA--CG--A-GAGA
1 ATCGCAATGCGAAATGAAA
787221 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
787240 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATGAAA
787260 ATCGCAA
1 ATCGCAA
787267 CGAGATAATC
Statistics
Matches: 71, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
14 10 0.14
15 1 0.01
16 2 0.03
17 2 0.03
18 1 0.01
19 39 0.55
20 16 0.23
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.14
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:787298 original size:53 final size:53
Alignment explanation
Indices: 787169--787285 Score: 218
Period size: 53 Copynumber: 2.2 Consensus size: 53
787159 AAAATTGACT
787169 ATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
*
787221 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGATA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
787274 ATCGCAATGCGA
1 ATCGCAATGCGA
787286 TTTTCATTTC
Statistics
Matches: 63, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
52 29 0.46
53 34 0.54
ACGTcount: A:0.44, C:0.18, G:0.23, T:0.15
Consensus pattern (53 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
Found at i:789616 original size:12 final size:12
Alignment explanation
Indices: 789599--789623 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
789589 TCTTCGGGGA
789599 CTTTTTCTTCTT
1 CTTTTTCTTCTT
789611 CTTTTTCTTCTT
1 CTTTTTCTTCTT
789623 C
1 C
789624 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:789832 original size:24 final size:24
Alignment explanation
Indices: 789798--789844 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
789788 CTGAAACATC
789798 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
789822 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
789845 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:790540 original size:20 final size:20
Alignment explanation
Indices: 790512--790721 Score: 217
Period size: 20 Copynumber: 10.5 Consensus size: 20
790502 AAATTTCAGT
* * *
790512 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
790532 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
790552 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
*
790572 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
790592 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCGC
* **
790612 ATTGCGATTTACCCATAT-GC
1 GTTGCGATTTACGGAT-TCGC
*
790632 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
790652 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
790672 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCGC
* **
790692 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCGC
790712 GTTGCGATTT
1 GTTGCGATTT
790722 TGGAAAATCG
Statistics
Matches: 162, Mismatches: 24, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
20 161 0.99
21 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCGC
Found at i:790738 original size:21 final size:21
Alignment explanation
Indices: 790708--790790 Score: 78
Period size: 21 Copynumber: 4.0 Consensus size: 21
790698 ATTTTCATAT
*
790708 TCGCGTTGCGATTTTGGAAAA
1 TCGCATTGCGATTTTGGAAAA
* * * **
790729 TCGCAATGCGAATTTGTACTA
1 TCGCATTGCGATTTTGGAAAA
*
790750 TCGCATTGCGATTTT-CAAGAA
1 TCGCATTGCGATTTTGGAA-AA
*
790771 TCGCGTTGCGATTTTGGAAA
1 TCGCATTGCGATTTTGGAAA
790791 CTGATTTGCG
Statistics
Matches: 47, Mismatches: 13, Indels: 4
0.73 0.20 0.06
Matches are distributed among these distances:
20 1 0.02
21 44 0.94
22 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTTGGAAAA
Found at i:790781 original size:42 final size:43
Alignment explanation
Indices: 790688--790786 Score: 100
Period size: 42 Copynumber: 2.4 Consensus size: 43
790678 ATTTATGTGT
* *
790688 TCGCGTTGCG-ATTT-TCATATTCGCGTTGCGATTTTGGAAAA
1 TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
**
790729 TCGCAATGCGAATTTGT-ACTA-TCGCATTGCGATTTT-CAAGAA
1 TCGCGTTGCGAATTTGTCA-TATTCGCATTGCGATTTTGCAA-AA
*
790771 TCGCGTTGCGATTTTG
1 TCGCGTTGCGAATTTG
790787 GAAACTGATT
Statistics
Matches: 47, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
41 10 0.21
42 34 0.72
43 3 0.06
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (43 bp):
TCGCGTTGCGAATTTGTCATATTCGCATTGCGATTTTGCAAAA
Found at i:792193 original size:40 final size:40
Alignment explanation
Indices: 792138--792213 Score: 143
Period size: 40 Copynumber: 1.9 Consensus size: 40
792128 TATGTCCCAG
792138 TTCTGATCAAAATAGCTTGGGTTGGAAAGGTTGTTTCCAT
1 TTCTGATCAAAATAGCTTGGGTTGGAAAGGTTGTTTCCAT
*
792178 TTCTGTTCAAAATAGCTTGGGTTGGAAAGGTTGTTT
1 TTCTGATCAAAATAGCTTGGGTTGGAAAGGTTGTTT
792214 AAAACCCGGG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.24, C:0.11, G:0.26, T:0.39
Consensus pattern (40 bp):
TTCTGATCAAAATAGCTTGGGTTGGAAAGGTTGTTTCCAT
Found at i:811096 original size:14 final size:14
Alignment explanation
Indices: 811069--811111 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
811059 TATTAAATGA
811069 TAAATTAT-ATATT
1 TAAATTATAATATT
811082 TAATATT-TAATATT
1 TAA-ATTATAATATT
*
811096 TAAATTATCATATT
1 TAAATTATAATATT
811110 TA
1 TA
811112 TTTTATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 7 0.27
14 19 0.73
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (14 bp):
TAAATTATAATATT
Found at i:815583 original size:59 final size:59
Alignment explanation
Indices: 815467--815612 Score: 165
Period size: 57 Copynumber: 2.5 Consensus size: 59
815457 AATTGATCTC
* * *
815467 TAAA-TTTTTAAATATTTCAATTTCATCCCTAAACTGACTATCATTCTAAATTAGTCC-
1 TAAACTTTTTGAACATTTCAATTTCATCCATAAACTGACTATCATTCTAAATTAGTCCT
* * * *
815524 TCAAC-TTTTGAACATTTTAGTTTCATCCATAAACTAGGAACT-TCATTCTAAATTGGTCCT
1 TAAACTTTTTGAACATTTCAATTTCATCCATAAACT--G-ACTATCATTCTAAATTAGTCCT
*
815584 TAAACTTTTTGAATATTTCAATTTCATCC
1 TAAACTTTTTGAACATTTCAATTTCATCC
815613 CAAATTATAA
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
57 28 0.39
59 17 0.24
60 7 0.10
61 20 0.28
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.42
Consensus pattern (59 bp):
TAAACTTTTTGAACATTTCAATTTCATCCATAAACTGACTATCATTCTAAATTAGTCCT
Found at i:815850 original size:58 final size:59
Alignment explanation
Indices: 815739--815854 Score: 155
Period size: 59 Copynumber: 2.0 Consensus size: 59
815729 GTTGAATTTT
* * *
815739 GGGATGAAATTAAAAGATTCAAAAGTTTGGGATCAATTTAGAATGAGGGTCATAGTTTA
1 GGGATGAAATTAAAAGATTCAAAAGTTTAGGACCAATTTAGAATGAGAGTCATAGTTTA
* **
815798 GGGATGAAATTATACTATTC-AAAGTTTAAGGACCAATTTA-AATGAGAGTCATAGTTT
1 GGGATGAAATTAAAAGATTCAAAAGTTT-AGGACCAATTTAGAATGAGAGTCATAGTTT
815855 TTATTAATAA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
58 23 0.46
59 27 0.54
ACGTcount: A:0.39, C:0.07, G:0.22, T:0.32
Consensus pattern (59 bp):
GGGATGAAATTAAAAGATTCAAAAGTTTAGGACCAATTTAGAATGAGAGTCATAGTTTA
Found at i:826167 original size:8 final size:8
Alignment explanation
Indices: 826154--826207 Score: 63
Period size: 8 Copynumber: 6.8 Consensus size: 8
826144 TTAGATTCAT
*
826154 TATATATA
1 TATATAGA
*
826162 TATATATA
1 TATATAGA
826170 TATATAGA
1 TATATAGA
*
826178 TAGATAGA
1 TATATAGA
*
826186 TAGATAGA
1 TATATAGA
*
826194 TAGATAGA
1 TATATAGA
826202 TATATA
1 TATATA
826208 ATACCCAAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 43 1.00
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (8 bp):
TATATAGA
Found at i:826171 original size:12 final size:12
Alignment explanation
Indices: 826154--826207 Score: 63
Period size: 12 Copynumber: 4.5 Consensus size: 12
826144 TTAGATTCAT
* *
826154 TATATATATATA
1 TATATAGATAGA
*
826166 TATATATATAGA
1 TATATAGATAGA
*
826178 TAGATAGATAGA
1 TATATAGATAGA
*
826190 TAGATAGATAGA
1 TATATAGATAGA
826202 TATATA
1 TATATA
826208 ATACCCAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (12 bp):
TATATAGATAGA
Found at i:826172 original size:4 final size:4
Alignment explanation
Indices: 826173--826203 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
826163 ATATATATAT
826173 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
826204 TATAATACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.23, T:0.26
Consensus pattern (4 bp):
ATAG
Found at i:842103 original size:13 final size:13
Alignment explanation
Indices: 842085--842109 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
842075 GTATTATATA
842085 CTTTTAATAATTC
1 CTTTTAATAATTC
842098 CTTTTAATAATT
1 CTTTTAATAATT
842110 TAATGTGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (13 bp):
CTTTTAATAATTC
Found at i:844102 original size:32 final size:34
Alignment explanation
Indices: 844055--844120 Score: 109
Period size: 32 Copynumber: 2.0 Consensus size: 34
844045 GATATGAAGA
*
844055 AGAAGAAAAATATGAAAGTGGGTCCTTATTCTAT
1 AGAAGAAAAATATGAAAGTGGGTCCCTATTCTAT
844089 AGAA-AAAAA-ATGAAAGTGGGTCCCTATTCTAT
1 AGAAGAAAAATATGAAAGTGGGTCCCTATTCTAT
844121 GGTTATATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 22 0.71
33 5 0.16
34 4 0.13
ACGTcount: A:0.42, C:0.11, G:0.20, T:0.27
Consensus pattern (34 bp):
AGAAGAAAAATATGAAAGTGGGTCCCTATTCTAT
Found at i:844301 original size:2 final size:2
Alignment explanation
Indices: 844294--844358 Score: 130
Period size: 2 Copynumber: 32.5 Consensus size: 2
844284 TTTGTACTTT
844294 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
844336 TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
844359 GTATGTGCAT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 63 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:845622 original size:2 final size:2
Alignment explanation
Indices: 845580--845607 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
845570 CAATTCATGC
845580 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
845608 CCTGTCATCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:862449 original size:29 final size:30
Alignment explanation
Indices: 862416--862487 Score: 74
Period size: 31 Copynumber: 2.4 Consensus size: 30
862406 TTTCATTTAG
862416 GTCCCCCAACTTTTAA-AACTTGCAATACA
1 GTCCCCCAACTTTTAACAACTTGCAATACA
* * ** **
862445 GTCCCCTAACATTTAATCAGTTTGCAATATG
1 GTCCCCCAACTTTTAA-CAACTTGCAATACA
862476 GTCCCCCAACTT
1 GTCCCCCAACTT
862488 AAATCACTGT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
29 14 0.42
31 19 0.58
ACGTcount: A:0.29, C:0.31, G:0.10, T:0.31
Consensus pattern (30 bp):
GTCCCCCAACTTTTAACAACTTGCAATACA
Found at i:863281 original size:35 final size:35
Alignment explanation
Indices: 863233--863344 Score: 134
Period size: 35 Copynumber: 3.2 Consensus size: 35
863223 TCTAAACCTT
* * * *
863233 AAATTGAAGTATTTTAGAATTTGGGGTTTAAAATT
1 AAATTGAATTATTTTGGAATTTAGGGTTTAAAATG
* *
863268 TAATTGAATTATTTTGGAATTTAGGGTTTAGAATG
1 AAATTGAATTATTTTGGAATTTAGGGTTTAAAATG
* * *
863303 AAATTGAATTACTTTGGAAATTAGGGTTTAGAATG
1 AAATTGAATTATTTTGGAATTTAGGGTTTAAAATG
*
863338 AGATTGA
1 AAATTGA
863345 GGACTATTTT
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 67 1.00
ACGTcount: A:0.36, C:0.01, G:0.22, T:0.41
Consensus pattern (35 bp):
AAATTGAATTATTTTGGAATTTAGGGTTTAAAATG
Found at i:866292 original size:30 final size:31
Alignment explanation
Indices: 866216--866292 Score: 77
Period size: 31 Copynumber: 2.5 Consensus size: 31
866206 GGGGTCTACT
*
866216 TATTTTTTTTTAAAATTAAAGACTCAAATTA
1 TATTTTTTTATAAAATTAAAGACTCAAATTA
* * * *
866247 TAATTTTTAAAAAAATTAAAG-C-CTAATATA
1 TATTTTTTTATAAAATTAAAGACTCAAAT-TA
*
866277 TATTTTTTTGTAAAAT
1 TATTTTTTTATAAAAT
866293 CAGGGTATAA
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
29 4 0.11
30 15 0.42
31 17 0.47
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (31 bp):
TATTTTTTTATAAAATTAAAGACTCAAATTA
Found at i:867282 original size:20 final size:20
Alignment explanation
Indices: 867259--867308 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
867249 CGATATACCA
867259 GGTAAAATTATGATAAAACC
1 GGTAAAATTATGATAAAACC
*
867279 GGTAACAA-AATGATAAAACC
1 GGTAA-AATTATGATAAAACC
867299 GGTAAAATTA
1 GGTAAAATTA
867309 AAAGTGTCGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 2 0.08
20 22 0.85
21 2 0.08
ACGTcount: A:0.52, C:0.10, G:0.16, T:0.22
Consensus pattern (20 bp):
GGTAAAATTATGATAAAACC
Found at i:867445 original size:20 final size:19
Alignment explanation
Indices: 867422--867468 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
867412 CGATATAACA
*
867422 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAAAC
*
867442 GGTATCAAAATGATAAAAAC
1 GGTA-AAAAATGATAAAAAC
867462 GGTAAAA
1 GGTAAAA
867469 TGATACCGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 2 0.09
20 18 0.78
21 3 0.13
ACGTcount: A:0.55, C:0.09, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAAAC
Found at i:869802 original size:33 final size:33
Alignment explanation
Indices: 869747--869809 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
869737 AAATAGATGG
*
869747 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
***
869780 AGTGGTGAAAGAAGTTTCGGTGTTAAGGGG
1 AGTGGTGAAAGAAGTAGAGGTGTTAAGGGG
869810 GTGATATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.29, C:0.02, G:0.46, T:0.24
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:871650 original size:19 final size:19
Alignment explanation
Indices: 871587--871649 Score: 110
Period size: 19 Copynumber: 3.4 Consensus size: 19
871577 AATGTCGAGT
*
871587 TAATTTTGTATAAGATTTA
1 TAATTTTGTATACGATTTA
871606 TAATTTTGTATACGATTTA
1 TAATTTTGTATACGATTTA
871625 TAATTTTGTATACGATTTA
1 TAATTTTGTATACGATTTA
871644 T-ATTTT
1 TAATTTT
871650 TTTATGTGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
18 5 0.12
19 38 0.88
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.56
Consensus pattern (19 bp):
TAATTTTGTATACGATTTA
Done.