genome.fa.s799.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000799.1 Hibiscus syriacus cultivar Beakdansim tig00001553_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92502

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5733--5759	7	3.9	7	100	0	54	25	14	44	14	1.84
6115--6162	3	16.0	3	100	0	96	33	0	0	66	0.92
7286--7327	22	1.9	22	100	0	84	30	11	9	47	1.72
9856--9956	46	2.1	46	85	5	130	44	10	5	38	1.64
18567--18604	19	2.0	19	94	0	67	47	13	10	28	1.76
18891--18960	29	2.3	30	80	7	79	41	8	7	42	1.63
19005--19060	26	2.2	26	100	0	112	23	35	10	30	1.89
26331--26369	19	2.0	20	85	5	53	30	15	20	33	1.94
31859--32379	157	3.3	158	84	3	633	47	5	18	28	1.72
34754--34826	20	3.6	20	70	3	74	31	17	27	23	1.97
34756--34847	41	2.2	41	96	0	166	29	20	25	25	1.99
34882--34931	20	2.5	21	77	9	59	34	12	26	28	1.92
39167--39245	35	2.3	35	97	0	149	34	18	25	21	1.96
42217--42256	21	1.9	21	90	10	64	52	0	10	37	1.35
44513--44546	18	1.9	17	88	5	50	70	0	8	20	1.13
44585--44616	2	16.0	2	100	0	64	50	0	0	50	1.00
45065--45118	18	2.9	19	84	15	78	62	1	5	29	1.28
45456--45560	37	2.8	37	85	0	138	29	14	14	41	1.85
47520--47581	23	2.9	21	85	7	81	20	35	25	17	1.95
47522--47607	21	4.1	20	74	14	66	22	34	26	16	1.95
52512--52596	40	2.1	40	88	0	125	29	14	23	32	1.94
53900--54041	30	4.6	28	77	19	97	50	1	7	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53884--54024	34	4.4	33	74	19	127	55	0	6	37	1.31
59820--59926	52	2.1	52	98	0	205	26	5	25	42	1.76
69016--69136	42	2.9	42	81	2	145	26	20	19	33	1.96
69155--69262	37	2.9	37	83	0	144	41	19	18	20	1.90
69265--69682	55	7.6	55	84	3	428	29	16	23	29	1.96
69265--69627	165	2.2	165	85	0	483	29	15	24	30	1.96
73431--73460	7	4.3	7	91	0	51	83	0	3	13	0.77
75120--75182	27	2.7	21	71	28	56	38	20	15	25	1.92
75126--75179	27	2.0	27	100	0	108	37	22	18	22	1.95
77612--77677	18	3.5	18	78	10	69	6	15	16	62	1.52
77622--77677	18	2.8	21	73	15	73	5	17	16	60	1.53
78759--79218	134	3.5	134	86	2	617	31	19	19	29	1.96
79750--80087	45	7.6	45	77	7	219	42	19	17	21	1.89
79784--80093	135	2.3	136	81	4	362	41	19	17	21	1.90
79785--80095	90	3.5	88	81	5	331	42	18	17	21	1.89
80024--80931	38	22.9	38	76	9	798	37	16	19	25	1.93
80024--80931	118	7.6	117	77	10	742	37	16	19	25	1.93
80024--80966	80	11.9	78	79	8	772	37	16	19	26	1.93
82771--82841	17	4.2	16	74	15	54	8	15	0	76	1.02
82771--82890	26	4.9	26	77	10	87	8	16	0	75	1.04
82771--82813	9	4.9	9	78	16	54	11	11	0	76	1.02
82804--82915	28	3.7	29	71	19	79	6	20	0	73	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82818--82886	22	3.1	22	81	6	68	5	18	0	75	1.00
82827--82893	23	2.9	23	82	6	82	5	20	0	73	1.04
82827--82890	22	2.9	22	77	13	69	6	18	0	75	1.01
89198--89239	21	2.0	21	90	0	66	4	16	16	61	1.50
89504--89537	12	2.8	12	100	0	68	52	5	8	32	1.56

Tables:   1

The End!