Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007990.1 Hibiscus syriacus cultivar Beakdansim tig00110438_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 212873
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32
Found at i:1703 original size:16 final size:16
Alignment explanation
Indices: 1679--1710 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1669 TAGTTAGCTC
*
1679 ATTTTCATTCTAACAT
1 ATTTGCATTCTAACAT
1695 ATTTGCATTCTAACAT
1 ATTTGCATTCTAACAT
1711 TGGTGGAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.19, G:0.03, T:0.47
Consensus pattern (16 bp):
ATTTGCATTCTAACAT
Found at i:3128 original size:29 final size:29
Alignment explanation
Indices: 3092--3150 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
3082 AATCATCCAC
3092 AATGAAAGAAAATTCATTTTGACTCCATT
1 AATGAAAGAAAATTCATTTTGACTCCATT
3121 AATGAAAGAAAATTCATTTTGACTCCATT
1 AATGAAAGAAAATTCATTTTGACTCCATT
3150 A
1 A
3151 TCTCCTAGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (29 bp):
AATGAAAGAAAATTCATTTTGACTCCATT
Found at i:11577 original size:24 final size:21
Alignment explanation
Indices: 11542--11584 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 21
11532 GGCTCATTCT
*
11542 TTTGAATTTCAAGAGGTACATCC
1 TTTGAATGTCAA-AGG-ACATCC
11565 TTTGAAATGTCAAAGGACAT
1 TTTG-AATGTCAAAGGACAT
11585 ATCTTGTGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 4 0.22
23 7 0.39
24 7 0.39
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (21 bp):
TTTGAATGTCAAAGGACATCC
Found at i:14887 original size:20 final size:21
Alignment explanation
Indices: 14850--14888 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
14840 GATGGTCTTG
*
14850 ATGAAGGATGTTGATGATGAA
1 ATGAAGGATGGTGATGATGAA
*
14871 ATGAA-GATGGTGGTGATG
1 ATGAAGGATGGTGATGATG
14889 TTGTATCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.33, C:0.00, G:0.38, T:0.28
Consensus pattern (21 bp):
ATGAAGGATGGTGATGATGAA
Found at i:23027 original size:11 final size:12
Alignment explanation
Indices: 23008--23080 Score: 74
Period size: 13 Copynumber: 5.5 Consensus size: 12
22998 CTTTTTGAAC
23008 TTCTCTTTTTCTT
1 TTCT-TTTTTCTT
23021 TTCTTTTCTTCTT
1 TTCTTTT-TTCTT
23034 CTTCTTTTCTTCTT
1 -TTCTTTT-TTCTT
*
23048 TTCTGATTTTTCTC
1 TTCT--TTTTTCTT
23062 TTCTTTTTGTCTT
1 TTCTTTTT-TCTT
23075 TTCTTT
1 TTCTTT
23081 CTTTTTGCAC
Statistics
Matches: 53, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
12 7 0.13
13 22 0.42
14 21 0.40
15 3 0.06
ACGTcount: A:0.01, C:0.22, G:0.03, T:0.74
Consensus pattern (12 bp):
TTCTTTTTTCTT
Found at i:23032 original size:8 final size:8
Alignment explanation
Indices: 23021--23085 Score: 55
Period size: 8 Copynumber: 7.9 Consensus size: 8
23011 TCTTTTTCTT
23021 TTCTTTTC
1 TTCTTTTC
23029 TTC--TTC
1 TTCTTTTC
23035 TTCTTTTC
1 TTCTTTTC
23043 TTCTTTTC
1 TTCTTTTC
*
23051 TGATTTTTCTC
1 T--TCTTT-TC
23062 TTCTTTT-
1 TTCTTTTC
23069 TGTCTTTTC
1 T-TCTTTTC
23078 TTTCTTTT
1 -TTCTTTT
23086 TGCACTCCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 15
0.73 0.03 0.23
Matches are distributed among these distances:
6 6 0.13
7 1 0.02
8 22 0.47
9 10 0.21
10 5 0.11
11 3 0.06
ACGTcount: A:0.02, C:0.22, G:0.03, T:0.74
Consensus pattern (8 bp):
TTCTTTTC
Found at i:23046 original size:22 final size:21
Alignment explanation
Indices: 23021--23085 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 21
23011 TCTTTTTCTT
23021 TTCTTTTCTTCTTCTTCTTTTC
1 TTCTTTTCTT-TTCTTCTTTTC
*
23043 TTCTTTTCTGATTT-TTCTCTTC
1 TTCTTTTCT--TTTCTTCTTTTC
23065 TT-TTTGTCTTTTCTTTCTTTT
1 TTCTTT-TCTTTTC-TTCTTTT
23086 TGCACTCCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
20 3 0.08
21 3 0.08
22 27 0.75
23 2 0.06
24 1 0.03
ACGTcount: A:0.02, C:0.22, G:0.03, T:0.74
Consensus pattern (21 bp):
TTCTTTTCTTTTCTTCTTTTC
Found at i:23051 original size:19 final size:19
Alignment explanation
Indices: 23014--23079 Score: 61
Period size: 19 Copynumber: 3.6 Consensus size: 19
23004 GAACTTCTCT
23014 TTTTCTTTTCTT-TTCTTC
1 TTTTCTTTTCTTCTTCTTC
23032 TTCTTCTTTTCTTCTT-TTC
1 TT-TTCTTTTCTTCTTCTTC
**
23051 TGAT-TTTTC-TCTTCTT-
1 TTTTCTTTTCTTCTTCTTC
23067 TTTGTCTTTTCTT
1 TTT-TCTTTTCTT
23080 TCTTTTTGCA
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
16 5 0.13
17 8 0.21
18 8 0.21
19 15 0.39
20 2 0.05
ACGTcount: A:0.02, C:0.21, G:0.03, T:0.74
Consensus pattern (19 bp):
TTTTCTTTTCTTCTTCTTC
Found at i:23085 original size:27 final size:26
Alignment explanation
Indices: 23007--23085 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 26
22997 TCTTTTTGAA
*
23007 CTTCTCTTTTTCTTTTCTTTTCTTCTT
1 CTTCT-TTTTTCTTTTCTTTTTTTCTT
*
23034 CTTCTTTTCTTCTTTTCTGATTTTTC-T
1 CTTCTTTT-TTCTTTTCT-TTTTTTCTT
23061 CTTCTTTTTGTCTTTTCTTTCTTTT
1 CTTCTTTTT-TCTTTTCTTT-TTTT
23086 TGCACTCCAA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
26 5 0.11
27 35 0.78
28 5 0.11
ACGTcount: A:0.01, C:0.23, G:0.03, T:0.73
Consensus pattern (26 bp):
CTTCTTTTTTCTTTTCTTTTTTTCTT
Found at i:25724 original size:19 final size:21
Alignment explanation
Indices: 25681--25732 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
25671 GAAACCCCTT
25681 TGAAGATACATGACTTTTAAA
1 TGAAGATACATGACTTTTAAA
*
25702 TGAAAATACATGA-TTTT-AA
1 TGAAGATACATGACTTTTAAA
25721 TGAAGATACATG
1 TGAAGATACATG
25733 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.45
20 4 0.14
21 12 0.41
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (21 bp):
TGAAGATACATGACTTTTAAA
Found at i:26657 original size:23 final size:24
Alignment explanation
Indices: 26627--26680 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
26617 ATATTATAAC
26627 TGATGTATGGC-TCTGATACCACT
1 TGATGTATGGCTTCTGATACCACT
*
26650 TGATGTATGGCTTCTGATGCCACT
1 TGATGTATGGCTTCTGATACCACT
26674 TGATGTA
1 TGATGTA
26681 AGGTAATTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 11 0.38
24 18 0.62
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (24 bp):
TGATGTATGGCTTCTGATACCACT
Found at i:27461 original size:90 final size:91
Alignment explanation
Indices: 27345--27517 Score: 278
Period size: 90 Copynumber: 1.9 Consensus size: 91
27335 GGGAAATGAT
*
27345 GCTTGGCCGAATAGGGAGAGAGCTCTTCATCTTGGCGCCTAAATAAAT-CACATGCAAGGCACAT
1 GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAAT-AATCCACATGCAAGGCACAT
*
27409 -GGGGCTGTTCACATGCAAAACACGTG
65 GGGGGCTGGTCACATGCAAAACACGTG
* *
27435 GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATGATCCTCATGCAAGGCACATG
1 GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATAATCCACATGCAAGGCACATG
*
27500 GGGGCTGGTCATATGCAA
66 GGGGCTGGTCACATGCAA
27518 GGCACATGGG
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
89 2 0.03
90 58 0.76
91 16 0.21
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (91 bp):
GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATAATCCACATGCAAGGCACATG
GGGGCTGGTCACATGCAAAACACGTG
Found at i:36616 original size:5 final size:5
Alignment explanation
Indices: 36606--36678 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
36596 GAACTTCTCT
*
36606 TTTTC TTTTC TTTTC TTTTC TTCTTA TTTTC TTATT- TTCTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TT-TTC TTTTC TT-TTC TT-TTC TTTTC
* *
36653 TCTTC -TTT- TTGTC TTTTC -TTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
36679 TGCACTCCAA
Statistics
Matches: 55, Mismatches: 7, Indels: 12
0.74 0.09 0.16
Matches are distributed among these distances:
4 8 0.15
5 39 0.71
6 8 0.15
ACGTcount: A:0.03, C:0.19, G:0.01, T:0.77
Consensus pattern (5 bp):
TTTTC
Found at i:36624 original size:16 final size:16
Alignment explanation
Indices: 36606--36679 Score: 64
Period size: 16 Copynumber: 4.6 Consensus size: 16
36596 GAACTTCTCT
36606 TTTTC-TTTTCTTTTC
1 TTTTCTTTTTCTTTTC
* *
36621 TTTTCTTCTTATTTTC
1 TTTTCTTTTTCTTTTC
*
36637 TTATT-TTCTTCTTTTC
1 TT-TTCTTTTTCTTTTC
*
36653 TCTTCTTTTTGTCTTTTC
1 TTTTC-TTTT-TCTTTTC
36671 -TTTCTTTTT
1 TTTTCTTTTT
36680 GCACTCCAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
15 8 0.17
16 25 0.52
17 8 0.17
18 7 0.15
ACGTcount: A:0.03, C:0.19, G:0.01, T:0.77
Consensus pattern (16 bp):
TTTTCTTTTTCTTTTC
Found at i:36629 original size:8 final size:8
Alignment explanation
Indices: 36613--36678 Score: 55
Period size: 8 Copynumber: 7.9 Consensus size: 8
36603 TCTTTTTCTT
36613 TTCTTTTC
1 TTCTTTTC
36621 TT-TTCTTC
1 TTCTT-TTC
*
36629 TTATTTTC
1 TTCTTTTC
*
36637 TTATTTTC
1 TTCTTTTC
36645 TTCTTTTCTC
1 TTC-TTT-TC
36655 TTCTTTT-
1 TTCTTTTC
36662 TGTCTTTTC
1 T-TCTTTTC
36671 TTTCTTTT
1 -TTCTTTT
36679 TGCACTCCAA
Statistics
Matches: 50, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
7 3 0.06
8 27 0.54
9 14 0.28
10 6 0.12
ACGTcount: A:0.03, C:0.20, G:0.02, T:0.76
Consensus pattern (8 bp):
TTCTTTTC
Found at i:36672 original size:13 final size:12
Alignment explanation
Indices: 36611--36673 Score: 56
Period size: 13 Copynumber: 5.1 Consensus size: 12
36601 TCTCTTTTTC
36611 TTTTCTTTTCTT
1 TTTTCTTTTCTT
*
36623 TTCTTCTTAT-TT
1 TT-TTCTTTTCTT
* *
36635 TCTTATTTTCTT
1 TTTTCTTTTCTT
*
36647 CTTTTCTCTTCTT
1 -TTTTCTTTTCTT
36660 TTTGTCTTTTCTT
1 TTT-TCTTTTCTT
36673 T
1 T
36674 CTTTTTGCAC
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
11 5 0.13
12 10 0.26
13 24 0.62
ACGTcount: A:0.03, C:0.19, G:0.02, T:0.76
Consensus pattern (12 bp):
TTTTCTTTTCTT
Found at i:36677 original size:17 final size:18
Alignment explanation
Indices: 36599--36680 Score: 73
Period size: 18 Copynumber: 4.6 Consensus size: 18
36589 TCTTTTTGAA
36599 CTTCTCTTTT-TCTTTTCT
1 CTTCT-TTTTGTCTTTTCT
* *
36617 TTTCTTTTCT-TCTTATTTT
1 CTTCTTTT-TGTCTT-TTCT
*
36636 CTTATTTTCT-TCTTTTCT
1 CTTCTTTT-TGTCTTTTCT
36654 CTTCTTTTTGTCTTTTCT
1 CTTCTTTTTGTCTTTTCT
36672 -TTCTTTTTG
1 CTTCTTTTTG
36681 CACTCCAATT
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
17 13 0.24
18 27 0.49
19 15 0.27
ACGTcount: A:0.02, C:0.21, G:0.02, T:0.74
Consensus pattern (18 bp):
CTTCTTTTTGTCTTTTCT
Found at i:36970 original size:19 final size:20
Alignment explanation
Indices: 36931--36966 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 20
36921 GGGTAATAAT
36931 ATAAGTAATGAAAATAAATA
1 ATAAGTAATGAAAATAAATA
36951 ATAAG-AATG-AAATAAA
1 ATAAGTAATGAAAATAAA
36967 ATAAATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.44
19 4 0.25
20 5 0.31
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (20 bp):
ATAAGTAATGAAAATAAATA
Found at i:43240 original size:23 final size:24
Alignment explanation
Indices: 43210--43263 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
43200 ATATTATAAC
43210 TGATGTATGGC-TCTGATACCACT
1 TGATGTATGGCTTCTGATACCACT
*
43233 TGATGTATGGCTTCTGATGCCACT
1 TGATGTATGGCTTCTGATACCACT
43257 TGATGTA
1 TGATGTA
43264 AGGTAATTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 11 0.38
24 18 0.62
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (24 bp):
TGATGTATGGCTTCTGATACCACT
Found at i:49712 original size:24 final size:24
Alignment explanation
Indices: 49685--49735 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
49675 TGTGGATCAC
* *
49685 CAAAAGTCACGTTTATTGATTCTT
1 CAAAAGACACGTTTATTGAATCTT
* *
49709 CAAAAGACATGTTTCTTGAATCTT
1 CAAAAGACACGTTTATTGAATCTT
49733 CAA
1 CAA
49736 CTTGAAGTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (24 bp):
CAAAAGACACGTTTATTGAATCTT
Found at i:52336 original size:16 final size:16
Alignment explanation
Indices: 52307--52340 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
52297 TGCAAAAGTG
52307 AAGTGCAAAGACTCAA
1 AAGTGCAAAGACTCAA
52323 AAGT-CAAAGCACTCAA
1 AAGTGCAAAG-ACTCAA
52339 AA
1 AA
52341 AGAAGAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.53, C:0.21, G:0.15, T:0.12
Consensus pattern (16 bp):
AAGTGCAAAGACTCAA
Found at i:55144 original size:11 final size:13
Alignment explanation
Indices: 55112--55141 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
55102 TGGCCAAAGA
55112 TGAAAAGGTATGT
1 TGAAAAGGTATGT
55125 TGAAAAGGTATG-
1 TGAAAAGGTATGT
55137 TGAAA
1 TGAAA
55142 GGTGTTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (13 bp):
TGAAAAGGTATGT
Found at i:58210 original size:24 final size:24
Alignment explanation
Indices: 58183--58248 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
58173 TTCCACCAAA
*
58183 GCTCTGATTACCGCTTGATATATG
1 GCTCTGATTACCACTTGATATATG
* *
58207 GCTCGGA-TACCACTTGATGTATG
1 GCTCTGATTACCACTTGATATATG
*
58230 GCTTCTGA-TGCCACTTGAT
1 GC-TCTGATTACCACTTGAT
58249 GTAAGGTAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
23 16 0.44
24 20 0.56
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (24 bp):
GCTCTGATTACCACTTGATATATG
Found at i:58249 original size:24 final size:23
Alignment explanation
Indices: 58191--58251 Score: 77
Period size: 24 Copynumber: 2.6 Consensus size: 23
58181 AAGCTCTGAT
* *
58191 TACCGCTTGATATATGGCTCGGA
1 TACCACTTGATGTATGGCTCGGA
*
58214 TACCACTTGATGTATGGCTTCTGA
1 TACCACTTGATGTATGGC-TCGGA
*
58238 TGCCACTTGATGTA
1 TACCACTTGATGTA
58252 AGGTAATTCT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
23 16 0.48
24 17 0.52
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.34
Consensus pattern (23 bp):
TACCACTTGATGTATGGCTCGGA
Found at i:59094 original size:90 final size:90
Alignment explanation
Indices: 58914--59079 Score: 260
Period size: 90 Copynumber: 1.8 Consensus size: 90
58904 TGGAAATGAT
*
58914 GCTTGGCCGAATAGGGAGAGAGCTCTTCATCTTGGCGCCTAAATAAACCACATGCAAGGCACATG
1 GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATAAACCACATGCAAGGCACATG
*
58979 GGGCTGTTCACACGCAAAACACATG
66 GGGCTGGTCACACGCAAAACACATG
* * * * *
59004 GCTTGGCCGAATAGGGAGATAACTCTTCATCTTGGTGCCTAAATGATCCTCATGCAAGGCACATG
1 GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATAAACCACATGCAAGGCACAT-
59069 GGGGCTGGTCA
65 GGGGCTGGTCA
59080 TATCAAGGCA
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
90 58 0.85
91 10 0.15
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (90 bp):
GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATAAACCACATGCAAGGCACATG
GGGCTGGTCACACGCAAAACACATG
Found at i:66991 original size:11 final size:11
Alignment explanation
Indices: 66975--67013 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
66965 TATTTTTTTC
66975 AAAAAAACAAA
1 AAAAAAACAAA
66986 AAAAAAACAAA
1 AAAAAAACAAA
**
66997 AAAAAGGCAAA
1 AAAAAAACAAA
67008 AAAAAA
1 AAAAAA
67014 GCCAAAAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.87, C:0.08, G:0.05, T:0.00
Consensus pattern (11 bp):
AAAAAAACAAA
Found at i:67009 original size:12 final size:12
Alignment explanation
Indices: 66975--67022 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
66965 TATTTTTTTC
66975 AAAAAA-ACAAA
1 AAAAAAGACAAA
66986 AAAAAA-AC-AA
1 AAAAAAGACAAA
*
66996 AAAAAAGGCAAA
1 AAAAAAGACAAA
*
67008 AAAAAAGCCAAA
1 AAAAAAGACAAA
67020 AAA
1 AAA
67023 GCCAAAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
10 8 0.24
11 9 0.27
12 16 0.48
ACGTcount: A:0.83, C:0.10, G:0.06, T:0.00
Consensus pattern (12 bp):
AAAAAAGACAAA
Found at i:67023 original size:21 final size:22
Alignment explanation
Indices: 66974--67029 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
66964 CTATTTTTTT
66974 CAAAAAA-ACAAAAAAAAAACA
1 CAAAAAAGACAAAAAAAAAACA
* * *
66995 AAAAAAAGGCAAAAAAAAAGC-
1 CAAAAAAGACAAAAAAAAAACA
*
67016 CAAAAAAGCCAAAA
1 CAAAAAAGACAAAA
67030 TTTCAAAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.79, C:0.14, G:0.07, T:0.00
Consensus pattern (22 bp):
CAAAAAAGACAAAAAAAAAACA
Found at i:72149 original size:19 final size:21
Alignment explanation
Indices: 72125--72176 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
72115 CGGCCAAGAG
*
72125 CATGTATCTTCA-TT-AAAAT
1 CATGTATTTTCATTTAAAAAT
72144 CATGTATTTTCATTTAAAAAT
1 CATGTATTTTCATTTAAAAAT
72165 CATGTATTTTCA
1 CATGTATTTTCA
72177 AGGGGATTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 11 0.37
20 2 0.07
21 17 0.57
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (21 bp):
CATGTATTTTCATTTAAAAAT
Found at i:80518 original size:36 final size:36
Alignment explanation
Indices: 80466--80578 Score: 165
Period size: 36 Copynumber: 3.2 Consensus size: 36
80456 GATACTATTT
*
80466 TCATCACCATAATCCATCTCCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
* *
80502 TCATCACCATAGTCCATCACCATTATCACACCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
* *
80538 TCATCACCATATTCCATCACCA-TATCACGCCAATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
80573 ACATCA
1 TCATCA
80579 TCCTTCCATT
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
35 16 0.23
36 54 0.77
ACGTcount: A:0.34, C:0.36, G:0.03, T:0.27
Consensus pattern (36 bp):
TCATCACCATAATCCATCACCATTATCACGCCTATA
Found at i:80539 original size:11 final size:11
Alignment explanation
Indices: 80466--80564 Score: 76
Period size: 13 Copynumber: 8.3 Consensus size: 11
80456 GATACTATTT
80466 TCATCACCATAA
1 TCATCACCAT-A
*
80478 TCCATCTCCATTA
1 T-CATCACCA-TA
*
80491 TCA-CGCCTATA
1 TCATCACC-ATA
80502 TCATCACCATA
1 TCATCACCATA
80513 GTCCATCACCATTA
1 -T-CATCACCA-TA
80527 TCA-CACCTATA
1 TCATCACC-ATA
80538 TCATCACCATA
1 TCATCACCATA
80549 TTCCATCACCATA
1 -T-CATCACCATA
80562 TCA
1 TCA
80565 CGCCAATAAC
Statistics
Matches: 73, Mismatches: 3, Indels: 23
0.74 0.03 0.23
Matches are distributed among these distances:
11 25 0.34
12 17 0.23
13 28 0.38
14 3 0.04
ACGTcount: A:0.32, C:0.36, G:0.02, T:0.29
Consensus pattern (11 bp):
TCATCACCATA
Found at i:80593 original size:33 final size:33
Alignment explanation
Indices: 80549--80617 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
80539 CATCACCATA
*
80549 TTCCATCACCATATCA-CGCCAATAACATCATCC
1 TTCCATCACCATATCATCACCAATAA-ATCATCC
* * *
80582 TTCCATTACCATTTCATCACCATTAAATCATCC
1 TTCCATCACCATATCATCACCAATAAATCATCC
80615 TTC
1 TTC
80618 ATTCATCAAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.30, C:0.36, G:0.01, T:0.32
Consensus pattern (33 bp):
TTCCATCACCATATCATCACCAATAAATCATCC
Found at i:82329 original size:16 final size:16
Alignment explanation
Indices: 82305--82336 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82295 TAGTTAGCTC
*
82305 ATTTTCATTCTAACAT
1 ATTTGCATTCTAACAT
82321 ATTTGCATTCTAACAT
1 ATTTGCATTCTAACAT
82337 TGGTGGAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.19, G:0.03, T:0.47
Consensus pattern (16 bp):
ATTTGCATTCTAACAT
Found at i:83758 original size:29 final size:29
Alignment explanation
Indices: 83722--83780 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
83712 AATCATCCAC
83722 AATGAAAGAAAATTCATTTTGACTCCATT
1 AATGAAAGAAAATTCATTTTGACTCCATT
83751 AATGAAAGAAAATTCATTTTGACTCCATT
1 AATGAAAGAAAATTCATTTTGACTCCATT
83780 A
1 A
83781 TCTCCTAGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.34
Consensus pattern (29 bp):
AATGAAAGAAAATTCATTTTGACTCCATT
Found at i:92213 original size:24 final size:21
Alignment explanation
Indices: 92178--92220 Score: 50
Period size: 23 Copynumber: 1.9 Consensus size: 21
92168 GGCTCATTCT
*
92178 TTTGAATTTCAAGAGGTACATCC
1 TTTGAATGTCAA-AGG-ACATCC
92201 TTTGAAATGTCAAAGGACAT
1 TTTG-AATGTCAAAGGACAT
92221 ATCTTGTGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 4 0.22
23 7 0.39
24 7 0.39
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.33
Consensus pattern (21 bp):
TTTGAATGTCAAAGGACATCC
Found at i:95519 original size:20 final size:21
Alignment explanation
Indices: 95482--95520 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
95472 GATGGTCTTG
*
95482 ATGAAGGATGTTGATGATGAA
1 ATGAAGGATGGTGATGATGAA
*
95503 ATGAA-GATGGTGGTGATG
1 ATGAAGGATGGTGATGATG
95521 TTGTATCTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.33, C:0.00, G:0.38, T:0.28
Consensus pattern (21 bp):
ATGAAGGATGGTGATGATGAA
Found at i:103653 original size:5 final size:5
Alignment explanation
Indices: 103643--103716 Score: 61
Period size: 5 Copynumber: 15.8 Consensus size: 5
103633 GAACTTCTCT
**
103643 TTTTC TTTTC TTTTC TTTTC TTCTTC TTTTC --TTC TTTTC TGAT- TTTTC
1 TTTTC TTTTC TTTTC TTTTC TT-TTC TTTTC TTTTC TTTTC TTTTC TTTTC
* *
103691 TCTTC -TTT- TTGTC TTTTC -TTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
103717 TGCACTCCAA
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
3 3 0.06
4 10 0.19
5 36 0.67
6 5 0.09
ACGTcount: A:0.01, C:0.20, G:0.03, T:0.76
Consensus pattern (5 bp):
TTTTC
Found at i:103656 original size:11 final size:11
Alignment explanation
Indices: 103640--103711 Score: 58
Period size: 11 Copynumber: 6.5 Consensus size: 11
103630 TTTGAACTTC
103640 TCTTTTTCTTT
1 TCTTTTTCTTT
103651 TC-TTTTCTTT
1 TCTTTTTCTTT
*
103661 TCTTCTTCTTT
1 TCTTTTTCTTT
*
103672 TCTTCTTT-TCT
1 TCTT-TTTCTTT
** *
103683 GATTTTTCTCT
1 TCTTTTTCTTT
103694 TCTTTTTGTCTTT
1 TC-TTTT-TCTTT
103707 TCTTT
1 TCTTT
103712 CTTTTTGCAC
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
10 13 0.27
11 20 0.42
12 9 0.19
13 6 0.12
ACGTcount: A:0.01, C:0.21, G:0.03, T:0.75
Consensus pattern (11 bp):
TCTTTTTCTTT
Found at i:103661 original size:16 final size:17
Alignment explanation
Indices: 103640--103675 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
103630 TTTGAACTTC
103640 TCTTTTTCTT-TTCTTT
1 TCTTTTTCTTCTTCTTT
103656 TC-TTTTCTTCTTCTTT
1 TCTTTTTCTTCTTCTTT
103672 TCTT
1 TCTT
103676 CTTTTCTGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.39
16 10 0.56
17 1 0.06
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (17 bp):
TCTTTTTCTTCTTCTTT
Found at i:103666 original size:8 final size:8
Alignment explanation
Indices: 103650--103716 Score: 57
Period size: 8 Copynumber: 7.9 Consensus size: 8
103640 TCTTTTTCTT
103650 TTCTTTTC
1 TTCTTTTC
103658 TT-TTCTTC
1 TTCTT-TTC
103666 TTCTTTTC
1 TTCTTTTC
103674 TTCTTTTC
1 TTCTTTTC
*
103682 TGATTTTTCTC
1 T--TCTTT-TC
103693 TTCTTTT-
1 TTCTTTTC
103700 TGTCTTTTC
1 T-TCTTTTC
103709 TTTCTTTT
1 -TTCTTTT
103717 TGCACTCCAA
Statistics
Matches: 49, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
7 3 0.06
8 26 0.53
9 12 0.24
10 5 0.10
11 3 0.06
ACGTcount: A:0.01, C:0.21, G:0.03, T:0.75
Consensus pattern (8 bp):
TTCTTTTC
Found at i:103682 original size:16 final size:17
Alignment explanation
Indices: 103651--103716 Score: 66
Period size: 16 Copynumber: 3.8 Consensus size: 17
103641 CTTTTTCTTT
103651 TCTTTTCTT-TTCTTCT-
1 TCTTTTCTTCTT-TTCTG
103667 TCTTTTCTTCTTTTCTG
1 TCTTTTCTTCTTTTCTG
*
103684 ATTTTTCTCTTCTTTT-TG
1 -TCTTT-TCTTCTTTTCTG
103702 TCTTTTCTTTCTTTT
1 TCTTTTC-TTCTTTT
103717 TGCACTCCAA
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
16 15 0.35
17 13 0.30
18 6 0.14
19 9 0.21
ACGTcount: A:0.02, C:0.21, G:0.03, T:0.74
Consensus pattern (17 bp):
TCTTTTCTTCTTTTCTG
Found at i:103688 original size:27 final size:27
Alignment explanation
Indices: 103636--103709 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
103626 TCTTTTTGAA
**
103636 CTTCTCTTTT-TCTTTTCTTTTCTTTTCTT
1 CTTCT-TTTTGTCTTTTCTGAT-TTTTC-T
103665 CTTCTTTTCT-TCTTTTCTGATTTTTCT
1 CTTCTTTT-TGTCTTTTCTGATTTTTCT
103692 CTTCTTTTTGTCTTTTCT
1 CTTCTTTTTGTCTTTTCT
103710 TTCTTTTTGC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
26 1 0.02
27 17 0.41
28 8 0.20
29 15 0.37
ACGTcount: A:0.01, C:0.23, G:0.03, T:0.73
Consensus pattern (27 bp):
CTTCTTTTTGTCTTTTCTGATTTTTCT
Found at i:103715 original size:17 final size:18
Alignment explanation
Indices: 103667--103718 Score: 65
Period size: 17 Copynumber: 2.9 Consensus size: 18
103657 CTTTTCTTCT
103667 TCTTTTC-TTCTTTTCTGA
1 TCTTTTCTTTCTTTT-TGA
103685 T-TTTTCTCTTCTTTTTG-
1 TCTTTTCT-TTCTTTTTGA
103702 TCTTTTCTTTCTTTTTG
1 TCTTTTCTTTCTTTTTG
103719 CACTCCAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
17 15 0.48
18 9 0.29
19 7 0.23
ACGTcount: A:0.02, C:0.19, G:0.06, T:0.73
Consensus pattern (18 bp):
TCTTTTCTTTCTTTTTGA
Found at i:106350 original size:19 final size:21
Alignment explanation
Indices: 106307--106358 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
106297 GAAACCCCTT
106307 TGAAGATACATGACTTTTAAA
1 TGAAGATACATGACTTTTAAA
*
106328 TGAAAATACATGA-TTTT-AA
1 TGAAGATACATGACTTTTAAA
106347 TGAAGATACATG
1 TGAAGATACATG
106359 CTCTTGGCCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 13 0.45
20 4 0.14
21 12 0.41
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (21 bp):
TGAAGATACATGACTTTTAAA
Found at i:107282 original size:23 final size:24
Alignment explanation
Indices: 107252--107305 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
107242 ATATTATAAC
107252 TGATGTATGGC-TCTGATACCACT
1 TGATGTATGGCTTCTGATACCACT
*
107275 TGATGTATGGCTTCTGATGCCACT
1 TGATGTATGGCTTCTGATACCACT
107299 TGATGTA
1 TGATGTA
107306 AGGTAATTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 11 0.38
24 18 0.62
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (24 bp):
TGATGTATGGCTTCTGATACCACT
Found at i:108119 original size:89 final size:91
Alignment explanation
Indices: 107967--108138 Score: 269
Period size: 89 Copynumber: 1.9 Consensus size: 91
107957 GGGAAATGAT
*
107967 GCTTGGCCGAATAGGGAGAGAGCTCTTCATCTTGGCGCCTAAATAAATCACATGCAAGGCACAT-
1 GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATAAATCACATGCAAGGCACATG
*
108031 GGGGCTGTTCACATGCAAAACACGTG
66 GGGGCTGGTCACATGCAAAACACGTG
* *
108057 GCTTGGCCGAATAGGGAGA-AACTCTTCATCTTGGCGCCTAAAT-GATCCTCATGCAAGGCACAT
1 GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATAAAT-CACATGCAAGGCACAT
*
108120 GGGGGCTGGTCATATGCAA
65 GGGGGCTGGTCACATGCAA
108139 GGCACATGGG
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
88 2 0.03
89 38 0.51
90 35 0.47
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.22
Consensus pattern (91 bp):
GCTTGGCCGAATAGGGAGAGAACTCTTCATCTTGGCGCCTAAATAAATCACATGCAAGGCACATG
GGGGCTGGTCACATGCAAAACACGTG
Found at i:117209 original size:5 final size:5
Alignment explanation
Indices: 117199--117273 Score: 68
Period size: 5 Copynumber: 15.2 Consensus size: 5
117189 TTTGAACTTC
*
117199 TCTTT TCTTT TCTTT TCTTT TCTTCT TATTT TCTTAT T-TTCT TCTTT
1 TCTTT TCTTT TCTTT TCTTT TCTT-T TCTTT TCTT-T TCTT-T TCTTT
* *
117246 TCTCT TC-TT T-TTG TCTTT TC-TT TCTTT T
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT T
117274 GCACTCCAAT
Statistics
Matches: 57, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
4 8 0.14
5 41 0.72
6 8 0.14
ACGTcount: A:0.03, C:0.20, G:0.01, T:0.76
Consensus pattern (5 bp):
TCTTT
Found at i:117232 original size:8 final size:8
Alignment explanation
Indices: 117211--117248 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
117201 TTTTCTTTTC
117211 TTTTCTT-
1 TTTTCTTA
117218 TTCTTCTTA
1 TT-TTCTTA
117227 TTTTCTTA
1 TTTTCTTA
*
117235 TTTTCTTC
1 TTTTCTTA
117243 TTTTCT
1 TTTTCT
117249 CTTCTTTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
7 2 0.07
8 24 0.86
9 2 0.07
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTCTTA
Found at i:117266 original size:13 final size:12
Alignment explanation
Indices: 117206--117268 Score: 56
Period size: 13 Copynumber: 5.1 Consensus size: 12
117196 TTCTCTTTTC
117206 TTTTCTTTTCTT
1 TTTTCTTTTCTT
*
117218 TTCTTCTTAT-TT
1 TT-TTCTTTTCTT
* *
117230 TCTTATTTTCTT
1 TTTTCTTTTCTT
*
117242 CTTTTCTCTTCTT
1 -TTTTCTTTTCTT
117255 TTTGTCTTTTCTT
1 TTT-TCTTTTCTT
117268 T
1 T
117269 CTTTTGCACT
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
11 5 0.13
12 10 0.26
13 24 0.62
ACGTcount: A:0.03, C:0.19, G:0.02, T:0.76
Consensus pattern (12 bp):
TTTTCTTTTCTT
Found at i:123691 original size:12 final size:12
Alignment explanation
Indices: 123674--123703 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
123664 TATATAAACT
123674 ATATAATGCATA
1 ATATAATGCATA
123686 ATATAATGCATA
1 ATATAATGCATA
*
123698 TTATAA
1 ATATAA
123704 AGATGTGAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.37
Consensus pattern (12 bp):
ATATAATGCATA
Found at i:123804 original size:23 final size:24
Alignment explanation
Indices: 123774--123827 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
123764 ATATTATAAC
123774 TGATGTATGGC-TCTGATACCACT
1 TGATGTATGGCTTCTGATACCACT
*
123797 TGATGTATGGCTTCTGATGCCACT
1 TGATGTATGGCTTCTGATACCACT
123821 TGATGTA
1 TGATGTA
123828 AGGTAATTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 11 0.38
24 18 0.62
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.37
Consensus pattern (24 bp):
TGATGTATGGCTTCTGATACCACT
Found at i:126377 original size:24 final size:24
Alignment explanation
Indices: 126350--126400 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
126340 TTTGGATCAC
* *
126350 CAAAAGTCACGTTTATTGATTCTT
1 CAAAAGACACGTTTATTGAATCTT
* *
126374 CAAAAGACATGTTTCTTGAATCTT
1 CAAAAGACACGTTTATTGAATCTT
126398 CAA
1 CAA
126401 CTTGAAGTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (24 bp):
CAAAAGACACGTTTATTGAATCTT
Found at i:130274 original size:24 final size:24
Alignment explanation
Indices: 130247--130297 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
130237 TTTGGATCAC
* *
130247 CAAAAGTCACGTTTATTGATTCTT
1 CAAAAGACACGTTTATTGAATCTT
* *
130271 CAAAAGACATGTTTCTTGAATCTT
1 CAAAAGACACGTTTATTGAATCTT
130295 CAA
1 CAA
130298 CTTGAAGTGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (24 bp):
CAAAAGACACGTTTATTGAATCTT
Found at i:132895 original size:16 final size:16
Alignment explanation
Indices: 132866--132899 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
132856 TGCAAAAGTG
132866 AAGTGCAAAGACTCAA
1 AAGTGCAAAGACTCAA
132882 AAGT-CAAAGCACTCAA
1 AAGTGCAAAG-ACTCAA
132898 AA
1 AA
132900 AGAAGAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.53, C:0.21, G:0.15, T:0.12
Consensus pattern (16 bp):
AAGTGCAAAGACTCAA
Found at i:135704 original size:11 final size:13
Alignment explanation
Indices: 135672--135701 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
135662 TGGCCAAAGA
135672 TGAAAAGGTATGT
1 TGAAAAGGTATGT
135685 TGAAAAGGTATG-
1 TGAAAAGGTATGT
135697 TGAAA
1 TGAAA
135702 GGTGTTTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (13 bp):
TGAAAAGGTATGT
Found at i:138772 original size:24 final size:23
Alignment explanation
Indices: 138745--138813 Score: 93
Period size: 24 Copynumber: 2.9 Consensus size: 23
138735 TTCCACCAAA
*
138745 GCTCTGATTACCGCTTGATGTATG
1 GCTCTGA-TACCACTTGATGTATG
*
138769 GCTCGGATACCACTTGATGTATG
1 GCTCTGATACCACTTGATGTATG
*
138792 GCTTCTGATGCCACTTGATGTA
1 GC-TCTGATACCACTTGATGTA
138814 AGGTAATTCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 17 0.43
24 23 0.57
ACGTcount: A:0.19, C:0.22, G:0.25, T:0.35
Consensus pattern (23 bp):
GCTCTGATACCACTTGATGTATG
Found at i:138779 original size:23 final size:24
Alignment explanation
Indices: 138753--138813 Score: 88
Period size: 23 Copynumber: 2.6 Consensus size: 24
138743 AAGCTCTGAT
*
138753 TACCGCTTGATGTATGGC-TCGGA
1 TACCACTTGATGTATGGCTTCGGA
*
138776 TACCACTTGATGTATGGCTTCTGA
1 TACCACTTGATGTATGGCTTCGGA
*
138800 TGCCACTTGATGTA
1 TACCACTTGATGTA
138814 AGGTAATTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
23 17 0.50
24 17 0.50
ACGTcount: A:0.20, C:0.21, G:0.25, T:0.34
Consensus pattern (24 bp):
TACCACTTGATGTATGGCTTCGGA
Found at i:144365 original size:13 final size:13
Alignment explanation
Indices: 144349--144379 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
144339 AACAAAAAAC
144349 AAAAAAAGGCAAA
1 AAAAAAAGGCAAA
144362 AAAAAAAGGCAAA
1 AAAAAAAGGCAAA
144375 AAAAA
1 AAAAA
144380 CAAAAAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.81, C:0.06, G:0.13, T:0.00
Consensus pattern (13 bp):
AAAAAAAGGCAAA
Found at i:144366 original size:14 final size:14
Alignment explanation
Indices: 144344--144379 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
144334 AAAAAAACAA
144344 AAAACAAAAAAAGGC
1 AAAA-AAAAAAAGGC
144359 -AAAAAAAAAAGGC
1 AAAAAAAAAAAGGC
144372 AAAAAAAA
1 AAAAAAAA
144380 CAAAAAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 10 0.50
14 10 0.50
ACGTcount: A:0.81, C:0.08, G:0.11, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAGGC
Found at i:144368 original size:21 final size:21
Alignment explanation
Indices: 144337--144405 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 21
144327 TTTTTTCAAA
*
144337 AAAACAAAAAACAAAAAAAGGC
1 AAAA-AAAAAACAAAAAAAGAC
144359 AAAAAAAAAAGGCAAAAAAA-AC
1 AAAAAAAAAA--CAAAAAAAGAC
* * * *
144381 AAAAAAAGAGCCAAAAAAGCC
1 AAAAAAAAAACAAAAAAAGAC
144402 AAAA
1 AAAA
144406 TTTCAAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
20 7 0.18
21 11 0.28
22 13 0.33
23 8 0.21
ACGTcount: A:0.77, C:0.13, G:0.10, T:0.00
Consensus pattern (21 bp):
AAAAAAAAAACAAAAAAAGAC
Found at i:153552 original size:9 final size:9
Alignment explanation
Indices: 153538--153582 Score: 54
Period size: 10 Copynumber: 4.8 Consensus size: 9
153528 CTATTTTTTC
153538 AAAAAAACA
1 AAAAAAACA
153547 AAAAAAACA
1 AAAAAAACA
*
153556 AAAAAAGGCA
1 AAAAAA-ACA
*
153566 AAAAAAAGGA
1 AAAAAAA-CA
153576 AAAAAAA
1 AAAAAAA
153583 AGCCAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
9 15 0.48
10 16 0.52
ACGTcount: A:0.84, C:0.07, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAAAAACA
Found at i:153569 original size:11 final size:11
Alignment explanation
Indices: 153555--153592 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
153545 CAAAAAAAAC
153555 AAAAAAAGGCA
1 AAAAAAAGGCA
*
153566 AAAAAAAGGAA
1 AAAAAAAGGCA
*
153577 AAAAAAAGCCA
1 AAAAAAAGGCA
153588 AAAAA
1 AAAAA
153593 GCCAAAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.79, C:0.08, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAAAAAGGCA
Found at i:158717 original size:19 final size:21
Alignment explanation
Indices: 158693--158744 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
158683 CGGCCAAGAG
*
158693 CATGTATCTTCA-TT-AAAAT
1 CATGTATTTTCATTTAAAAAT
158712 CATGTATTTTCATTTAAAAAT
1 CATGTATTTTCATTTAAAAAT
158733 CATGTATTTTCA
1 CATGTATTTTCA
158745 AGGGGTTTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 11 0.37
20 2 0.07
21 17 0.57
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (21 bp):
CATGTATTTTCATTTAAAAAT
Found at i:167002 original size:36 final size:36
Alignment explanation
Indices: 166950--167032 Score: 148
Period size: 36 Copynumber: 2.3 Consensus size: 36
166940 GATACTATTT
*
166950 TCATCACCATAATCCATCTCCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
166986 TCATCACCATAGTCCATCACCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
167022 TCATCACCATA
1 TCATCACCATA
167033 TCACGCCAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.31, C:0.36, G:0.04, T:0.29
Consensus pattern (36 bp):
TCATCACCATAATCCATCACCATTATCACGCCTATA
Found at i:167034 original size:22 final size:23
Alignment explanation
Indices: 167000--167049 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
166990 CACCATAGTC
* *
167000 CATCACCATTATCACGCCTATAT
1 CATCACCATTATCACGCCAATAA
167023 CATCACCA-TATCACGCCAATAA
1 CATCACCATTATCACGCCAATAA
167045 CATCA
1 CATCA
167050 TCCTTCCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 17 0.68
23 8 0.32
ACGTcount: A:0.36, C:0.36, G:0.04, T:0.24
Consensus pattern (23 bp):
CATCACCATTATCACGCCAATAA
Found at i:172723 original size:36 final size:36
Alignment explanation
Indices: 172671--172783 Score: 174
Period size: 36 Copynumber: 3.2 Consensus size: 36
172661 GATACTATTT
*
172671 TCATCACCATAATCCATCTCCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
172707 TCATCACCATAGTCCATCACCATTATCACGCCTATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
* *
172743 TCATCACCATATTCCATCACCA-TATCACGCCAATA
1 TCATCACCATAATCCATCACCATTATCACGCCTATA
*
172778 ACATCA
1 TCATCA
172784 TCCTTCCATT
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
35 17 0.24
36 55 0.76
ACGTcount: A:0.33, C:0.36, G:0.04, T:0.27
Consensus pattern (36 bp):
TCATCACCATAATCCATCACCATTATCACGCCTATA
Found at i:172726 original size:13 final size:11
Alignment explanation
Indices: 172671--172769 Score: 67
Period size: 13 Copynumber: 8.3 Consensus size: 11
172661 GATACTATTT
172671 TCATCACCATAA
1 TCATCACCAT-A
*
172683 TCCATCTCCATTA
1 T-CATCACCA-TA
*
172696 TCA-CGCCTATA
1 TCATCACC-ATA
172707 TCATCACCATA
1 TCATCACCATA
172718 GTCCATCACCATTA
1 -T-CATCACCA-TA
*
172732 TCA-CGCCTATA
1 TCATCACC-ATA
172743 TCATCACCATA
1 TCATCACCATA
172754 TTCCATCACCATA
1 -T-CATCACCATA
172767 TCA
1 TCA
172770 CGCCAATAAC
Statistics
Matches: 71, Mismatches: 5, Indels: 23
0.72 0.05 0.23
Matches are distributed among these distances:
11 24 0.34
12 16 0.23
13 28 0.39
14 3 0.04
ACGTcount: A:0.31, C:0.36, G:0.03, T:0.29
Consensus pattern (11 bp):
TCATCACCATA
Found at i:172798 original size:33 final size:33
Alignment explanation
Indices: 172683--172822 Score: 97
Period size: 36 Copynumber: 4.1 Consensus size: 33
172673 ATCACCATAA
* * *
172683 TCCATCTCCATTATCACGCCTATATCATCA-CCAT
1 TCCATCACCA-TATCACGCCAATAACATCATCC-T
* *
172717 AGTCCATCACCATTATCACGCCTATATCATCA-CCATAT
1 --TCCATCACCA-TATCACGCCAATAACATCATCC---T
172755 TCCATCACCATATCACGCCAATAACATCATCCT
1 TCCATCACCATATCACGCCAATAACATCATCCT
* * * *
172788 TCCATTACCATTTCATCACCATTAA-ATCATCCT
1 TCCATCACCATATCA-CGCCAATAACATCATCCT
172821 TC
1 TC
172823 ATTCATCAAC
Statistics
Matches: 93, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
33 24 0.26
34 7 0.08
35 17 0.18
36 43 0.46
38 2 0.02
ACGTcount: A:0.30, C:0.36, G:0.03, T:0.31
Consensus pattern (33 bp):
TCCATCACCATATCACGCCAATAACATCATCCT
Found at i:174716 original size:22 final size:23
Alignment explanation
Indices: 174685--174735 Score: 86
Period size: 22 Copynumber: 2.3 Consensus size: 23
174675 TTAGAAGTTT
*
174685 GTGATAATATAGGCGTGAT-ATG
1 GTGATGATATAGGCGTGATAATG
174707 GTGATGATATAGGCGTGATAATG
1 GTGATGATATAGGCGTGATAATG
174730 GTGATG
1 GTGATG
174736 GACAGATTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 18 0.67
23 9 0.33
ACGTcount: A:0.29, C:0.04, G:0.35, T:0.31
Consensus pattern (23 bp):
GTGATGATATAGGCGTGATAATG
Found at i:183893 original size:27 final size:27
Alignment explanation
Indices: 183832--183893 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
183822 TTGGCTTGCT
183832 TTCTTTT-TGAATTTCTTTTTCTTTTC
1 TTCTTTTCTGAATTTCTTTTTCTTTTC
* * *
183858 TTCTATTCTGATTTTTTTTTTCTTTT-
1 TTCTTTTCTGAATTTCTTTTTCTTTTC
183884 TGTCTTTTCT
1 T-TCTTTTCT
183894 TTCTTTTTGC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.23
27 23 0.77
ACGTcount: A:0.06, C:0.15, G:0.05, T:0.74
Consensus pattern (27 bp):
TTCTTTTCTGAATTTCTTTTTCTTTTC
Found at i:194006 original size:33 final size:33
Alignment explanation
Indices: 193964--194032 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
193954 GTTGATGAAT
*
193964 GAAGGATGAT-TTAATGGTGATGAAATGGTAATG
1 GAAGGATGATGTTAATGGCG-TGAAATGGTAATG
* * *
193997 GAAGGATGATGTTATTGGCGTGATATGGTGATG
1 GAAGGATGATGTTAATGGCGTGAAATGGTAATG
194030 GAA
1 GAA
194033 TATGGTGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.32, C:0.01, G:0.36, T:0.30
Consensus pattern (33 bp):
GAAGGATGATGTTAATGGCGTGAAATGGTAATG
Found at i:194073 original size:36 final size:36
Alignment explanation
Indices: 194003--194115 Score: 165
Period size: 36 Copynumber: 3.2 Consensus size: 36
193993 AATGGAAGGA
* *
194003 TGATGTTATTGGCGTGAT-ATGGTGATGGAATATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
*
194038 TGATGATATAGGCGTGATAATGGTGATGGACTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
* * *
194074 TGATAATATAGGCGTGATAATGGAGATGGATTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
194110 TGATGA
1 TGATGA
194116 AAATAGTATC
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
35 16 0.23
36 54 0.77
ACGTcount: A:0.28, C:0.04, G:0.35, T:0.33
Consensus pattern (36 bp):
TGATGATATAGGCGTGATAATGGTGATGGAATATGG
Found at i:194075 original size:13 final size:11
Alignment explanation
Indices: 194017--194115 Score: 58
Period size: 13 Copynumber: 8.3 Consensus size: 11
194007 GTTATTGGCG
194017 TGATATGGTGA
1 TGATATGGTGA
194028 TGGAATATGGTGA
1 T-G-ATATGGTGA
*
194041 TGATATAGGCG-
1 TGATAT-GGTGA
194052 TGATAATGGTGA
1 TGAT-ATGGTGA
194064 TGGACTATGGTGA
1 T-GA-TATGGTGA
* *
194077 TAATATAGGCG-
1 TGATAT-GGTGA
*
194088 TGATAATGGAGA
1 TGAT-ATGGTGA
194100 TGGATTATGGTGA
1 T-GA-TATGGTGA
194113 TGA
1 TGA
194116 AAATAGTATC
Statistics
Matches: 69, Mismatches: 7, Indels: 23
0.70 0.07 0.23
Matches are distributed among these distances:
11 21 0.30
12 17 0.25
13 29 0.42
14 2 0.03
ACGTcount: A:0.30, C:0.03, G:0.35, T:0.31
Consensus pattern (11 bp):
TGATATGGTGA
Found at i:198418 original size:33 final size:33
Alignment explanation
Indices: 198376--198444 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
198366 GTTGATGAAT
*
198376 GAAGGATGAT-TTAATGGTGATGAAATGGTAATG
1 GAAGGATGATGTTAATGGCG-TGAAATGGTAATG
* * *
198409 GAAGGATGATGTTATTGGCGTGATATGGTGATG
1 GAAGGATGATGTTAATGGCGTGAAATGGTAATG
198442 GAA
1 GAA
198445 TATGGTGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 24 0.77
34 7 0.23
ACGTcount: A:0.32, C:0.01, G:0.36, T:0.30
Consensus pattern (33 bp):
GAAGGATGATGTTAATGGCGTGAAATGGTAATG
Found at i:198449 original size:13 final size:12
Alignment explanation
Indices: 198430--198526 Score: 62
Period size: 13 Copynumber: 8.0 Consensus size: 12
198420 TTATTGGCGT
198430 GATATGGTGATG
1 GATATGGTGATG
198442 GAATATGGTGAT-
1 G-ATATGGTGATG
*
198454 GATATAGGCG-T-
1 GATAT-GGTGATG
198465 GATAATGGTGATG
1 GAT-ATGGTGATG
198478 GACTATGGTGAT-
1 GA-TATGGTGATG
*
198490 GATATAGGCG-T-
1 GATAT-GGTGATG
*
198501 GATAATGGAGATG
1 GAT-ATGGTGATG
198514 GATTATGGTGATG
1 GA-TATGGTGATG
198527 AAAATAGTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 21
0.73 0.05 0.22
Matches are distributed among these distances:
11 21 0.30
12 16 0.23
13 30 0.43
14 2 0.03
ACGTcount: A:0.29, C:0.03, G:0.37, T:0.31
Consensus pattern (12 bp):
GATATGGTGATG
Found at i:198485 original size:36 final size:36
Alignment explanation
Indices: 198415--198527 Score: 174
Period size: 36 Copynumber: 3.2 Consensus size: 36
198405 AATGGAAGGA
* *
198415 TGATGTTATTGGCGTGAT-ATGGTGATGGAATATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
*
198450 TGATGATATAGGCGTGATAATGGTGATGGACTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
* *
198486 TGATGATATAGGCGTGATAATGGAGATGGATTATGG
1 TGATGATATAGGCGTGATAATGGTGATGGAATATGG
198522 TGATGA
1 TGATGA
198528 AAATAGTATC
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
35 16 0.22
36 56 0.78
ACGTcount: A:0.27, C:0.04, G:0.36, T:0.33
Consensus pattern (36 bp):
TGATGATATAGGCGTGATAATGGTGATGGAATATGG
Found at i:203323 original size:24 final size:24
Alignment explanation
Indices: 203296--203347 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
203286 GACATGTCCT
* * *
203296 TTGACGTTCCAACAGCTATGCCAC
1 TTGACGTTCAAAAAGATATGCCAC
* *
203320 TTGATGTTCAAAAAGATGTGCCAC
1 TTGACGTTCAAAAAGATATGCCAC
203344 TTGA
1 TTGA
203348 AGTGCCAAGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (24 bp):
TTGACGTTCAAAAAGATATGCCAC
Found at i:211434 original size:13 final size:11
Alignment explanation
Indices: 211393--211477 Score: 66
Period size: 11 Copynumber: 7.2 Consensus size: 11
211383 CCTTTCTGTC
211393 CATCACCATTAT
1 CATCACCA-TAT
*
211405 CA-CGCCTATAT
1 CATCACC-ATAT
211416 CATCACCATAGT
1 CATCACCATA-T
211428 CCATCACCATTAT
1 -CATCACCA-TAT
*
211441 CA-CGCCTATAT
1 CATCACC-ATAT
211452 CATCACCATATT
1 CATCACCATA-T
211464 CCATCACCATAT
1 -CATCACCATAT
211476 CA
1 CA
211478 CGCCTATATT
Statistics
Matches: 60, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
11 24 0.40
12 15 0.25
13 19 0.32
14 2 0.03
ACGTcount: A:0.32, C:0.36, G:0.04, T:0.28
Consensus pattern (11 bp):
CATCACCATAT
Found at i:211437 original size:36 final size:36
Alignment explanation
Indices: 211390--211494 Score: 185
Period size: 36 Copynumber: 2.9 Consensus size: 36
211380 AGTCCTTTCT
211390 GTCCATCACCATTATCACGCCTATATCATCACCATA
1 GTCCATCACCATTATCACGCCTATATCATCACCATA
211426 GTCCATCACCATTATCACGCCTATATCATCACCATA
1 GTCCATCACCATTATCACGCCTATATCATCACCATA
* *
211462 TTCCATCACCA-TATCACGCCTATATTATCACCA
1 GTCCATCACCATTATCACGCCTATATCATCACCA
211495 ACTTATAAAT
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
35 21 0.31
36 46 0.69
ACGTcount: A:0.30, C:0.36, G:0.05, T:0.29
Consensus pattern (36 bp):
GTCCATCACCATTATCACGCCTATATCATCACCATA
Done.