Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007995.1 Hibiscus syriacus cultivar Beakdansim tig00110445_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 866869
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 2 of 4
Found at i:279418 original size:40 final size:40
Alignment explanation
Indices: 279350--279486 Score: 140
Period size: 40 Copynumber: 3.4 Consensus size: 40
279340 AGAGAATATT
* *
279350 TGTCCCGAAGGACCATTACGT-CTCGAAGGACCACTGGATA
1 TGTCCCGAAGGACCACTATGTCCT-GAAGGACCACTGGATA
*
279390 TGTTCCGAAGGACCACTATGTCCTGAAGGACCAC----TA
1 TGTCCCGAAGGACCACTATGTCCTGAAGGACCACTGGATA
* **
279426 CGTCCCGAAGGACCACTAGATATGTCCCAAAGGACCACTGGATA
1 TGTCCCGAAGGACCAC----TATGTCCTGAAGGACCACTGGATA
279470 TGTCCCGAAGGACCACT
1 TGTCCCGAAGGACCACT
279487 GTAACCCTCG
Statistics
Matches: 80, Mismatches: 8, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
36 16 0.20
40 45 0.56
41 2 0.03
44 17 0.21
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.19
Consensus pattern (40 bp):
TGTCCCGAAGGACCACTATGTCCTGAAGGACCACTGGATA
Found at i:279440 original size:58 final size:58
Alignment explanation
Indices: 279350--279486 Score: 184
Period size: 58 Copynumber: 2.3 Consensus size: 58
279340 AGAGAATATT
* * * * *
279350 TGTCCCGAAGGACCATTACGTCTCGAAGGACCACTGGATATGTTCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTACGTCCCGAAGGACCACTAGATATGTCCCAAAGGACCACTA
*
279408 TGTCCTGAAGGACCACTACGTCCCGAAGGACCACTAGATATGTCCCAAAGGACCACTGGATA
1 TGTCCCGAAGGACCACTACGTCCCGAAGGACCACTAGATATGTCCCAAAGGACCAC----TA
279470 TGTCCCGAAGGACCACT
1 TGTCCCGAAGGACCACT
279487 GTAACCCTCG
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
58 50 0.74
62 18 0.26
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.19
Consensus pattern (58 bp):
TGTCCCGAAGGACCACTACGTCCCGAAGGACCACTAGATATGTCCCAAAGGACCACTA
Found at i:280125 original size:64 final size:64
Alignment explanation
Indices: 280016--280152 Score: 159
Period size: 64 Copynumber: 2.1 Consensus size: 64
280006 ATCCCTTGAC
* * * *
280016 GGGTGCATCGATGCACTATCTATGCATCGGTGCATAAATCCCATTCGATGTTTTTAATATT-AAG
1 GGGTGCATCGATGCACTATCGATGCATCGATACATAAATCCCATTCAATGTTTTT-ATATTAAAG
* ** ** *
280080 GGGTGCATCGATGCACTATCGGTGCATCGATACATTGATGGCATTCAATGTTTTTATTTTAAAG
1 GGGTGCATCGATGCACTATCGATGCATCGATACATAAATCCCATTCAATGTTTTTATATTAAAG
*
280144 GAGTGCATC
1 GGGTGCATC
280153 AGTACACTTC
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
63 4 0.07
64 57 0.93
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.34
Consensus pattern (64 bp):
GGGTGCATCGATGCACTATCGATGCATCGATACATAAATCCCATTCAATGTTTTTATATTAAAG
Found at i:282460 original size:17 final size:17
Alignment explanation
Indices: 282415--282461 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
282405 ATTGTTTATT
*
282415 GTTGACCGTTGATCGCC
1 GTTGACCGTTGACCGCC
* * *
282432 GTTGATCATTGACCGTC
1 GTTGACCGTTGACCGCC
282449 GTTGACCGTTGAC
1 GTTGACCGTTGAC
282462 TTTGACTGAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.15, C:0.26, G:0.28, T:0.32
Consensus pattern (17 bp):
GTTGACCGTTGACCGCC
Found at i:283408 original size:2 final size:2
Alignment explanation
Indices: 283401--283448 Score: 73
Period size: 2 Copynumber: 24.5 Consensus size: 2
283391 CATAATACTA
283401 AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT CAT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT
283442 AT AT AT A
1 AT AT AT A
283449 AGAAATCCAT
Statistics
Matches: 43, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.05
2 39 0.91
3 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:285500 original size:2 final size:2
Alignment explanation
Indices: 285493--285549 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
285483 CATGTGTTGC
285493 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
285535 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
285550 CTTCTTACCA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:286789 original size:14 final size:15
Alignment explanation
Indices: 286756--286794 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
286746 CCAGTAACCG
* *
286756 AGTCAACTCGGTCTA
1 AGTCAACTCGATCCA
286771 AGTCAACTC-ATCCA
1 AGTCAACTCGATCCA
286785 AGTCAACTCG
1 AGTCAACTCG
286795 TTAACTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23
Consensus pattern (15 bp):
AGTCAACTCGATCCA
Found at i:300429 original size:3 final size:3
Alignment explanation
Indices: 300423--300470 Score: 87
Period size: 3 Copynumber: 16.0 Consensus size: 3
300413 TATTTTTGTT
*
300423 TTA TTA TTA TTA TTA TTA TTA TTA TTA GTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
300471 AATAAAAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:309723 original size:115 final size:115
Alignment explanation
Indices: 309514--309740 Score: 355
Period size: 115 Copynumber: 2.0 Consensus size: 115
309504 AAGTGCCATG
* * * *
309514 TGCTCATGGTAGAAATAAGGAGGCTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTCGAGTTATCTGATC
* * * * *
309579 TGATTTGGTATGAACTCCAAAATCAATCATTGGATTTGAAAGATGAATTT
66 TGATTCGGTAGGAACCCCAAAACCAATCATTGGAATTGAAAGATGAATTT
309629 TGCTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTCGAGTTATCTGATC
1 TGCTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTCGAGTTATCTGATC
* *
309694 TGATTCGGTAGGAACCCCAGAACCGATCATTGGAATTGAAAGATGAA
66 TGATTCGGTAGGAACCCCAAAACCAATCATTGGAATTGAAAGATGAA
309741 CTGCATGATC
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
115 101 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.31
Consensus pattern (115 bp):
TGCTCATAGTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTCGAGTTATCTGATC
TGATTCGGTAGGAACCCCAAAACCAATCATTGGAATTGAAAGATGAATTT
Found at i:311949 original size:55 final size:54
Alignment explanation
Indices: 311883--311999 Score: 182
Period size: 55 Copynumber: 2.1 Consensus size: 54
311873 ACTTCAATGA
* *
311883 TTACGAACATCTGAGCAGAAGCCACA-AAAAAGGATGAATGTATTGTCAAAATGTT
1 TTACGAACATCTGAGCAGAAGCCACAGAAAAA-GATGAATGCACTGTC-AAATGTT
*
311938 TTACGAACATCTGAGCAGAAGCCACAGGAAAAGATGAATGCACTGTCAAATGTT
1 TTACGAACATCTGAGCAGAAGCCACAGAAAAAGATGAATGCACTGTCAAATGTT
311992 TTACGAAC
1 TTACGAAC
312000 CTGTTATTCT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
54 15 0.26
55 39 0.67
56 4 0.07
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (54 bp):
TTACGAACATCTGAGCAGAAGCCACAGAAAAAGATGAATGCACTGTCAAATGTT
Found at i:312399 original size:22 final size:22
Alignment explanation
Indices: 312362--312416 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
312352 ATCTACACTC
* *
312362 TTCAAAGATGATAGATTCTCTT
1 TTCAAAAATGACAGATTCTCTT
*
312384 TTTAAAAATGACAGATTCTCTT
1 TTCAAAAATGACAGATTCTCTT
*
312406 TTCAAAGATGA
1 TTCAAAAATGA
312417 AAACTTTATG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (22 bp):
TTCAAAAATGACAGATTCTCTT
Found at i:313218 original size:76 final size:76
Alignment explanation
Indices: 313092--314065 Score: 1759
Period size: 76 Copynumber: 12.8 Consensus size: 76
313082 CTATTTCCCA
313092 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
313157 AGCCTTCGGGT
66 AGCCTTAGGGT
*
313168 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
313233 ATCCTTAGGGT
66 AGCCTTAGGGT
313244 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
313309 AGCCTTAGGGT
66 AGCCTTAGGGT
313320 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
313385 AGCCTTAGGGT
66 AGCCTTAGGGT
313396 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
313461 AGCCTTCGGGT
66 AGCCTTAGGGT
* *
313472 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCAGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
* *
313537 ATCCTTAGGGC
66 AGCCTTAGGGT
*
313548 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
313613 ATCCTTAGGGT
66 AGCCTTAGGGT
313624 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
313689 AGCCTTAGGGT
66 AGCCTTAGGGT
*
313700 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
313765 AGCCTTCGGGT
66 AGCCTTAGGGT
* *
313776 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCAGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
313841 ATCCTTAGGGT
66 AGCCTTAGGGT
*
313852 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
313917 AGCCTTCGGGT
66 AGCCTTAGGGT
313928 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
313993 AGCCTCAGGGT
66 AGCCTTAGGGT
* * *
314004 CATCTGTAAGTCCTTCAGTGCATGATGTTTCCAAAAAGCCTTCGGGATCTTTTTGATTTTTT
1 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTT
314066 TAAACCCTCG
Statistics
Matches: 869, Mismatches: 29, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 869 1.00
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.37
Consensus pattern (76 bp):
CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:314246 original size:3 final size:3
Alignment explanation
Indices: 314240--314281 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
314230 TATTTTTGTT
* *
314240 TTA TTA TTA TTA TTA TTA ATA TTA GTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
314282 AATAAATAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:314292 original size:3 final size:3
Alignment explanation
Indices: 314286--314325 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
314276 TTATTAAATA
*
314286 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAA AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
314326 TTACAAAGCC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:316607 original size:71 final size:72
Alignment explanation
Indices: 316462--316609 Score: 199
Period size: 71 Copynumber: 2.1 Consensus size: 72
316452 TGGCAATTTG
* ** *
316462 TCAAAACTAGAAACGTTGAGCTTGGCCAACAACAACCTTGAAGGGAAAATCCCCATGACTATGGG
1 TCAAAACTAGAAACGTTGACCTTGGCCAACAACAACCTCAAACGGAAAATCCCCATGACTATGGG
*
316527 AAGCCTT
66 AAACCTT
* * * * *
316534 TCAAAACTAGAAGCGTTGACCTTGTCCAACAAC-ATCTCAAACGGCAAATCCCCGTGACTATGGG
1 TCAAAACTAGAAACGTTGACCTTGGCCAACAACAACCTCAAACGGAAAATCCCCATGACTATGGG
316598 AAACCTT
66 AAACCTT
316605 TCAAA
1 TCAAA
316610 TTTGAAATGG
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
71 36 0.55
72 30 0.45
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (72 bp):
TCAAAACTAGAAACGTTGACCTTGGCCAACAACAACCTCAAACGGAAAATCCCCATGACTATGGG
AAACCTT
Found at i:318304 original size:21 final size:20
Alignment explanation
Indices: 318272--318310 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
318262 GAGGGCTGGA
*
318272 AACCGGTTTGACCGGTTTTC
1 AACCAGTTTGACCGGTTTTC
318292 AACCAGTTATGACCGGTTT
1 AACCAGTT-TGACCGGTTT
318311 GACCGGTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (20 bp):
AACCAGTTTGACCGGTTTTC
Found at i:318326 original size:10 final size:9
Alignment explanation
Indices: 318273--318333 Score: 59
Period size: 9 Copynumber: 6.3 Consensus size: 9
318263 AGGGCTGGAA
318273 ACCGGTTTG
1 ACCGGTTTG
*
318282 ACCGGTTTTCA
1 ACCGG-TTT-G
*
318293 ACCAGTTATG
1 ACCGGTT-TG
318303 ACCGGTTTG
1 ACCGGTTTG
318312 ACCGGTTTCG
1 ACCGGTTT-G
*
318322 ACCGGTCTG
1 ACCGGTTTG
318331 ACC
1 ACC
318334 CGACCCGATT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
9 19 0.44
10 19 0.44
11 5 0.12
ACGTcount: A:0.16, C:0.28, G:0.26, T:0.30
Consensus pattern (9 bp):
ACCGGTTTG
Found at i:324975 original size:28 final size:29
Alignment explanation
Indices: 324941--325007 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
324931 CATTTTACAC
*
324941 AAATAGCACCC-TTTTAAAATAATTACCA
1 AAATAGCACCCATTTCAAAATAATTACCA
* *
324969 AAATAGCACCCATTTCGAATTAATTACCA
1 AAATAGCACCCATTTCAAAATAATTACCA
*
324998 GAATAGCACC
1 AAATAGCACC
325008 AAAACCGAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 11 0.32
29 23 0.68
ACGTcount: A:0.43, C:0.24, G:0.07, T:0.25
Consensus pattern (29 bp):
AAATAGCACCCATTTCAAAATAATTACCA
Found at i:325002 original size:29 final size:29
Alignment explanation
Indices: 324960--325065 Score: 140
Period size: 29 Copynumber: 3.7 Consensus size: 29
324950 CCTTTTAAAA
* **
324960 TAATTACCAAAATAGCACCCATTTCGAAT
1 TAATTACCAAAATAGCACCAAAATCGAAT
* *
324989 TAATTACCAGAATAGCACCAAAACCGAAT
1 TAATTACCAAAATAGCACCAAAATCGAAT
* *
325018 TATTTACCATAATAGCACCAAAATCGAAT
1 TAATTACCAAAATAGCACCAAAATCGAAT
*
325047 TATTTACCAAAATAGCACC
1 TAATTACCAAAATAGCACC
325066 GGTCAACGGT
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 68 1.00
ACGTcount: A:0.44, C:0.24, G:0.08, T:0.25
Consensus pattern (29 bp):
TAATTACCAAAATAGCACCAAAATCGAAT
Found at i:325096 original size:18 final size:17
Alignment explanation
Indices: 325066--325100 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
325056 AAATAGCACC
325066 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
325083 GGTCAACGGGTCGGGTCG
1 GGTCAAC-GGTCGGGTCG
325101 TGACCGGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.11, C:0.23, G:0.49, T:0.17
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:332226 original size:29 final size:29
Alignment explanation
Indices: 332190--332257 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
332180 CATTTTACAC
* *
332190 AAATAGCACCCTTTTTAAAATAATTACCA
1 AAATAGCACCCATTTCAAAATAATTACCA
* *
332219 AAATAGCACCCATTTCGAATTAATTACCA
1 AAATAGCACCCATTTCAAAATAATTACCA
*
332248 GAATAGCACC
1 AAATAGCACC
332258 AAAACCAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.43, C:0.24, G:0.07, T:0.26
Consensus pattern (29 bp):
AAATAGCACCCATTTCAAAATAATTACCA
Found at i:332268 original size:29 final size:29
Alignment explanation
Indices: 332236--332315 Score: 124
Period size: 29 Copynumber: 2.8 Consensus size: 29
332226 ACCCATTTCG
*
332236 AATTAATTACCAGAATAGCACCAAAACCA
1 AATTATTTACCAGAATAGCACCAAAACCA
**
332265 AATTATTTACCAGAATAGCACCAAAACTT
1 AATTATTTACCAGAATAGCACCAAAACCA
*
332294 AATTATTTACCAAAATAGCACC
1 AATTATTTACCAGAATAGCACC
332316 GGTCAACGGT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.47, C:0.23, G:0.06, T:0.24
Consensus pattern (29 bp):
AATTATTTACCAGAATAGCACCAAAACCA
Found at i:332338 original size:17 final size:17
Alignment explanation
Indices: 332316--332384 Score: 111
Period size: 17 Copynumber: 4.0 Consensus size: 17
332306 AAATAGCACC
332316 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
332333 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
*
332350 GGTCAACGGTCGGGCCG
1 GGTCAACGGTCGGGTCG
*
332367 GATCAACGGGTCGGGTCG
1 GGTCAAC-GGTCGGGTCG
332385 TGACCAGTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
17 39 0.81
18 9 0.19
ACGTcount: A:0.13, C:0.25, G:0.46, T:0.16
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:335273 original size:14 final size:15
Alignment explanation
Indices: 335256--335291 Score: 65
Period size: 14 Copynumber: 2.5 Consensus size: 15
335246 TTCGACCGGT
335256 CTGACCCGACCCGA-
1 CTGACCCGACCCGAC
335270 CTGACCCGACCCGAC
1 CTGACCCGACCCGAC
335285 CTGACCC
1 CTGACCC
335292 AACCGTTGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 14 0.67
15 7 0.33
ACGTcount: A:0.19, C:0.53, G:0.19, T:0.08
Consensus pattern (15 bp):
CTGACCCGACCCGAC
Found at i:337777 original size:28 final size:29
Alignment explanation
Indices: 337724--337944 Score: 175
Period size: 29 Copynumber: 7.8 Consensus size: 29
337714 ACCCGATGAT
* *
337724 ATTTTGGGAATTAATTTGAAAA-AGTGAC
1 ATTTTGGGAATTATTTTTAAAACAGTGAC
* *
337752 ATTTTGGGAATT-TTTTAAAAATAGTGAC
1 ATTTTGGGAATTATTTTTAAAACAGTGAC
* * * *
337780 ATTCTAGTAATTATTTTTAAAACGGTGAC
1 ATTTTGGGAATTATTTTTAAAACAGTGAC
*
337809 ATTTTGGGAAATT-TTTGTAAAACAGTGAC
1 ATTTTGGG-AATTATTTTTAAAACAGTGAC
* * *
337838 ATTTCGGTAATTATTTTT-AAA-AGTGAT
1 ATTTTGGGAATTATTTTTAAAACAGTGAC
* * * * *
337865 ATTTTAGTAATTATTTTTAAATCTA-TAAT
1 ATTTTGGGAATTATTTTTAAAAC-AGTGAC
* * * *
337894 ATTTTAGTAATTATTTTTAAAAGAGTGAT
1 ATTTTGGGAATTATTTTTAAAACAGTGAC
* *
337923 ATTCTGGAAATTATTTTTAAAA
1 ATTTTGGGAATTATTTTTAAAA
337945 AAAAAGTGAT
Statistics
Matches: 158, Mismatches: 27, Indels: 15
0.79 0.14 0.08
Matches are distributed among these distances:
27 28 0.18
28 37 0.23
29 88 0.56
30 5 0.03
ACGTcount: A:0.37, C:0.05, G:0.14, T:0.44
Consensus pattern (29 bp):
ATTTTGGGAATTATTTTTAAAACAGTGAC
Found at i:337848 original size:58 final size:57
Alignment explanation
Indices: 337747--337915 Score: 168
Period size: 56 Copynumber: 3.0 Consensus size: 57
337737 ATTTGAAAAA
*
337747 GTGACATTTTGGGAATTTTTTAAAAATAGTGACATTCTAGTAATTATTTTTAAAACG
1 GTGACATTTTGGGAATTTTTTAAAAACAGTGACATTCTAGTAATTATTTTTAAAACG
*
337804 GTGACATTTTGGGAAATTTTTGT-AAAACAGTGACATT-TCGGTAATTATTTTTAAAA--
1 GTGACATTTTGGG-AATTTTT-TAAAAACAGTGACATTCT-AGTAATTATTTTTAAAACG
* * * * * * * *
337860 GTGATATTTTAGTAATTATTTTTAAATCTA-TAATATTTTAGTAATTATTTTTAAAA
1 GTGACATTTTGGGAATT-TTTTAAAAAC-AGTGACATTCTAGTAATTATTTTTAAAA
337916 GAGTGATATT
Statistics
Matches: 96, Mismatches: 9, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
55 5 0.05
56 38 0.40
57 16 0.17
58 36 0.38
59 1 0.01
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.46
Consensus pattern (57 bp):
GTGACATTTTGGGAATTTTTTAAAAACAGTGACATTCTAGTAATTATTTTTAAAACG
Found at i:337898 original size:85 final size:84
Alignment explanation
Indices: 337717--337944 Score: 221
Period size: 85 Copynumber: 2.7 Consensus size: 84
337707 CAACCCGACC
* * * *
337717 CGATGATATTTTGGGAATTAATTTG-AAAAAGTGACATTTTGGGAATT-TTTTAAAAATAGTGAC
1 CGATAATATTTTGGGAATT-ATTTGTAAAAAGTGACATTTCGGAAATTATTTT-TAAA-AGTGAC
337780 ATTCTAGTAATTATTTTTAAAA
63 ATTCTAGTAATTATTTTTAAAA
* * * * *
337802 CGGTGACATTTTGGGAAATT-TTTGTAAAACAGTGACATTTCGGTAATTATTTTTAAAAGTGATA
1 CGATAATATTTTGGG-AATTATTTGTAAAA-AGTGACATTTCGGAAATTATTTTTAAAAGTGACA
* *
337866 TTTTAGTAATTATTTTTAAAT
64 TTCTAGTAATTATTTTTAAAA
* * * * *
337887 CTATAATATTTTAGTAATTATTTTTAAAAGAGTGATA-TTCTGGAAATTATTTTTAAAA
1 CGATAATATTTTGGGAATTATTTGTAAAA-AGTGACATTTC-GGAAATTATTTTTAAAA
337945 AAAAAGTGAT
Statistics
Matches: 119, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
84 11 0.09
85 81 0.68
86 23 0.19
87 4 0.03
ACGTcount: A:0.36, C:0.05, G:0.15, T:0.44
Consensus pattern (84 bp):
CGATAATATTTTGGGAATTATTTGTAAAAAGTGACATTTCGGAAATTATTTTTAAAAGTGACATT
CTAGTAATTATTTTTAAAA
Found at i:338914 original size:32 final size:31
Alignment explanation
Indices: 338842--338918 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 31
338832 CTAATATGAC
* *
338842 TCTTAGGTAGGCTCTGTGGCCCTGAGATCAT
1 TCTTAGGTAGGCCCTGCGGCCCTGAGATCAT
** *
338873 TCTCGGGTAGGCCCTGCGGCCCT-AGGATGTAT
1 TCTTAGGTAGGCCCTGCGGCCCTGA-GAT-CAT
338905 TCTTAGGTAGGCCC
1 TCTTAGGTAGGCCC
338919 CATGGCCCCA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
30 1 0.03
31 22 0.59
32 14 0.38
ACGTcount: A:0.14, C:0.26, G:0.31, T:0.29
Consensus pattern (31 bp):
TCTTAGGTAGGCCCTGCGGCCCTGAGATCAT
Found at i:345184 original size:29 final size:28
Alignment explanation
Indices: 345143--345384 Score: 162
Period size: 29 Copynumber: 8.4 Consensus size: 28
345133 ACCAAACCCG
* * *
345143 GTGATATTTTGGGAATTAATTTGAAAAA
1 GTGACATTTTGGGAATTATTTTTAAAAA
*
345171 GGTGACATTTTGGGAATTTTTTTTAAATACA
1 -GTGACATTTTGGGAATTATTTTTAAA-A-A
* * * * *
345202 ATGATATTCTGGTAATTATTTTTAAAACG
1 GTGACATTTTGGGAATTATTTTTAAAA-A
*
345231 GTGACATTTTGGGAAATT-TTTGTAAAACA
1 GTGACATTTTGGG-AATTATTTTTAAAA-A
* *
345260 ATGACATTTTGGTAATTATTTTTAAAAA
1 GTGACATTTTGGGAATTATTTTTAAAAA
* *** **
345288 GTGATATTTTAATAATTATTTTTAAATCG
1 GTGACATTTTGGGAATTATTTTTAAA-AA
* * *
345317 GTGATATTTTAGTAATTATTTTTAAAACA
1 GTGACATTTTGGGAATTATTTTTAAAA-A
* * * *
345346 GTGATATTCTGGAAATTATTTTAAAAAA
1 GTGACATTTTGGGAATTATTTTTAAAAA
*
345374 TGTGATATTTT
1 -GTGACATTTT
345385 TGTAATTTTC
Statistics
Matches: 173, Mismatches: 33, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
28 28 0.16
29 118 0.68
30 26 0.15
31 1 0.01
ACGTcount: A:0.36, C:0.04, G:0.15, T:0.45
Consensus pattern (28 bp):
GTGACATTTTGGGAATTATTTTTAAAAA
Found at i:345278 original size:58 final size:58
Alignment explanation
Indices: 345144--345391 Score: 238
Period size: 58 Copynumber: 4.3 Consensus size: 58
345134 CCAAACCCGG
* * * * *
345144 TGATATTTTGGGAATTAATTTGAAAA-AGGTGACATTTTGGGAATTTTTTTTAAATACAA
1 TGATATTTTGGTAATTATTTTTAAAACA-GTGACATTTTGGAAATTATTTTTAAA-ACAA
* * *
345203 TGATATTCTGGTAATTATTTTTAAAACGGTGACATTTTGGGAAATT-TTTGTAAAACAA
1 TGATATTTTGGTAATTATTTTTAAAACAGTGACATTTT-GGAAATTATTTTTAAAACAA
* * * * **
345261 TGACATTTTGGTAATTATTTTTAAAA-AGTGATATTTT-AATAATTATTTTTAAATCGG
1 TGATATTTTGGTAATTATTTTTAAAACAGTGACATTTTGGA-AATTATTTTTAAAACAA
* * *
345318 TGATATTTTAGTAATTATTTTTAAAACAGTGATATTCTGGAAATTA-TTTTAAAA-AA
1 TGATATTTTGGTAATTATTTTTAAAACAGTGACATTTTGGAAATTATTTTTAAAACAA
*
345374 TGTGATATTTTTGTAATT
1 --TGATATTTTGGTAATT
345392 TTCGAATGTG
Statistics
Matches: 157, Mismatches: 24, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
55 1 0.01
56 4 0.03
57 48 0.31
58 58 0.37
59 40 0.25
60 6 0.04
ACGTcount: A:0.35, C:0.04, G:0.15, T:0.46
Consensus pattern (58 bp):
TGATATTTTGGTAATTATTTTTAAAACAGTGACATTTTGGAAATTATTTTTAAAACAA
Found at i:345326 original size:86 final size:86
Alignment explanation
Indices: 345141--345384 Score: 269
Period size: 86 Copynumber: 2.8 Consensus size: 86
345131 TGACCAAACC
* * *
345141 CGGTGATATTTTGGGAATTAATTTG-AAAA-AGGTGACATTTTGGGAATTTTTTTTAAATACAAT
1 CGGTGATATTTTGGGAATT-ATTTGTAAAACA-GTGACATTTTGGAAATTATTTTTAAA-A-AGT
* **
345204 GATATTCTGGTAATTATTTTTAAAA
62 GATATTTTAATAATTATTTTTAAAA
* * *
345229 CGGTGACATTTTGGGAAATT-TTTGTAAAACAATGACATTTTGGTAATTATTTTTAAAAAGTGAT
1 CGGTGATATTTTGGG-AATTATTTGTAAAACAGTGACATTTTGGAAATTATTTTTAAAAAGTGAT
*
345293 ATTTTAATAATTATTTTTAAAT
65 ATTTTAATAATTATTTTTAAAA
* * * * * *
345315 CGGTGATATTTTAGTAATTATTTTTAAAACAGTGATATTCTGGAAATTATTTTAAAAAATGTGAT
1 CGGTGATATTTTGGGAATTATTTGTAAAACAGTGACATTTTGGAAATTATTTTTAAAAA-GTGAT
345380 ATTTT
65 ATTTT
345385 TGTAATTTTC
Statistics
Matches: 133, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
85 4 0.03
86 68 0.51
87 15 0.11
88 41 0.31
89 5 0.04
ACGTcount: A:0.35, C:0.05, G:0.16, T:0.45
Consensus pattern (86 bp):
CGGTGATATTTTGGGAATTATTTGTAAAACAGTGACATTTTGGAAATTATTTTTAAAAAGTGATA
TTTTAATAATTATTTTTAAAA
Found at i:347863 original size:20 final size:20
Alignment explanation
Indices: 347840--347892 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
347830 TTAATTTTAC
347840 AAATATAAAAAAAT-CAGAAA
1 AAATATAAAAAAATCCA-AAA
*
347860 AAATACAAAAAAATCCAAAA
1 AAATATAAAAAAATCCAAAA
*
347880 AATTATAAAAAAA
1 AAATATAAAAAAA
347893 AATTAGTATG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 27 0.93
21 2 0.07
ACGTcount: A:0.75, C:0.08, G:0.02, T:0.15
Consensus pattern (20 bp):
AAATATAAAAAAATCCAAAA
Found at i:348603 original size:31 final size:31
Alignment explanation
Indices: 348550--348608 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
348540 ATTAATTTGA
** *
348550 ACATTTAATATTATGATGATTTATTTATAAT
1 ACATTTAATATTAAAATGATTTAGTTATAAT
* *
348581 ACATTTTATATTAAAATTATTTAGTTAT
1 ACATTTAATATTAAAATGATTTAGTTAT
348609 TTTTACATAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (31 bp):
ACATTTAATATTAAAATGATTTAGTTATAAT
Found at i:355226 original size:272 final size:273
Alignment explanation
Indices: 354740--355280 Score: 940
Period size: 272 Copynumber: 2.0 Consensus size: 273
354730 ATCATTTTGA
354740 CAAATTTAATTTTACAATTCAGGTACAATTCCATCGGTTATCGGAAATATAATTTCTCTAGAAAT
1 CAAATTTAATTTTACAATTCAGGTACAATTCCATCGGTTATCGGAAATATAATTTCTCTAGAAAT
* * * *
354805 TATTGATTTTTCGAATAACAACTTGGCATGTATAATATAACTTTCCTTCCTTTTTTTGTTGTTAT
66 TATTCATTTTTCGAATAACAACTTGACAGGTATAATATAACTTTCCTTCCTCTTTTTGTTGTTAT
* * *
354870 TTTGTTATACATTTATTAATTAGTTATAAGAATTTTTGTCATTTGATGTGTCCTTTTGTATTAAA
131 TTTGCTATACATTTATTAATTAGTTATAAGAATTTTTGTCATTTGACGTATCCTTTTGTATTAAA
* *
354935 ACATAAATCATTTAAATATTAAACACAGATAAATCCATTCTAAAATGATTTAAATTTTAATTATC
196 ACATAAATCATTTAAATATTAAACACAGATAAATCCATTCTAAAATGATTTAAATTTAAAATATC
355000 -TTATTTTTTCGT
261 TTTATTTTTTCGT
* *
355012 CAAATTTAATTTTACATTTCAGGTACAATTCCATCGGTTATCGGAAATATAATTTCTCTAGAGAT
1 CAAATTTAATTTTACAATTCAGGTACAATTCCATCGGTTATCGGAAATATAATTTCTCTAGAAAT
355077 TATTCATTTTTCGAATAACAACTTGACAGGTATAATATAACTTTCCTTCCTCTTTTTGTTGTTAT
66 TATTCATTTTTCGAATAACAACTTGACAGGTATAATATAACTTTCCTTCCTCTTTTTGTTGTTAT
* *
355142 TTTGCTATATATTTATTAATTAGTTATAAGAATTTTTGTCATTTGACGTATCCTTTTGTATTCAA
131 TTTGCTATACATTTATTAATTAGTTATAAGAATTTTTGTCATTTGACGTATCCTTTTGTATTAAA
* *
355207 ACATAAATCGTTTAAATATTAAACTCAGATAAATCCATTCTAAAATGATTTAAATTTAAAATATC
196 ACATAAATCATTTAAATATTAAACACAGATAAATCCATTCTAAAATGATTTAAATTTAAAATATC
355272 TTTATTTTT
261 TTTATTTTT
355281 AACTTGAAAT
Statistics
Matches: 253, Mismatches: 15, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
272 245 0.97
273 8 0.03
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.45
Consensus pattern (273 bp):
CAAATTTAATTTTACAATTCAGGTACAATTCCATCGGTTATCGGAAATATAATTTCTCTAGAAAT
TATTCATTTTTCGAATAACAACTTGACAGGTATAATATAACTTTCCTTCCTCTTTTTGTTGTTAT
TTTGCTATACATTTATTAATTAGTTATAAGAATTTTTGTCATTTGACGTATCCTTTTGTATTAAA
ACATAAATCATTTAAATATTAAACACAGATAAATCCATTCTAAAATGATTTAAATTTAAAATATC
TTTATTTTTTCGT
Found at i:358736 original size:12 final size:14
Alignment explanation
Indices: 358721--358777 Score: 68
Period size: 16 Copynumber: 4.2 Consensus size: 14
358711 TAGTAGTAGT
358721 AGAAG-AAG-AAGA
1 AGAAGAAAGAAAGA
358733 AGAAGAAAGAAAGAA
1 AGAAGAAAGAAAG-A
358748 AGAAAGAAAGAAAGA
1 AG-AAGAAAGAAAGA
358763 AGAA-AAAGAAA-A
1 AGAAGAAAGAAAGA
358775 AGA
1 AGA
358778 CCGGGGGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
12 9 0.22
13 10 0.24
14 5 0.12
15 6 0.15
16 11 0.27
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
AGAAGAAAGAAAGA
Found at i:358744 original size:4 final size:4
Alignment explanation
Indices: 358735--358773 Score: 60
Period size: 4 Copynumber: 9.5 Consensus size: 4
358725 GAAGAAGAAG
*
358735 AAGA AAGA AAGA AAGA AAGA AAGA AAGA AGAAA AAGA AA
1 AAGA AAGA AAGA AAGA AAGA AAGA AAGA A-AGA AAGA AA
358774 AAGACCGGGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 29 0.91
5 3 0.09
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (4 bp):
AAGA
Found at i:359820 original size:15 final size:15
Alignment explanation
Indices: 359798--359839 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
359788 TTAAATTAAA
359798 AAATATATATAATATT
1 AAATATATATAAT-TT
* *
359814 -TATATATTTAATTT
1 AAATATATATAATTT
359828 AAATATATATAA
1 AAATATATATAA
359840 CTAGCCCGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
14 2 0.10
15 19 0.90
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
AAATATATATAATTT
Found at i:363618 original size:29 final size:29
Alignment explanation
Indices: 363534--363627 Score: 75
Period size: 32 Copynumber: 3.1 Consensus size: 29
363524 AGTTTAAATA
* *
363534 TTTTACATTTTAATCACTAATTTTAATACT
1 TTTTATATTTTAAT-ACTAATTTTATTACT
363564 TTCATT-TATTTTTAACTAC-AAGTTTTATTACT
1 TT--TTATA-TTTTAA-TACTAA-TTTTATTACT
* * *
363596 TTTTATATTTTAATACTATTTTTTTTAAT
1 TTTTATATTTTAATACTAATTTTATTACT
363625 TTT
1 TTT
363628 ATTTGTTTTA
Statistics
Matches: 52, Mismatches: 5, Indels: 15
0.72 0.07 0.21
Matches are distributed among these distances:
29 14 0.27
30 11 0.21
31 5 0.10
32 21 0.40
33 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.01, T:0.61
Consensus pattern (29 bp):
TTTTATATTTTAATACTAATTTTATTACT
Found at i:363729 original size:11 final size:11
Alignment explanation
Indices: 363701--363734 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
363691 ATATGTTTAA
*
363701 ATTATTACTTTA
1 ATTATTA-TTTT
363713 ATTATTATTTT
1 ATTATTATTTT
363724 ATTATTATTTT
1 ATTATTATTTT
363735 CATCTTAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:365991 original size:43 final size:44
Alignment explanation
Indices: 365925--366010 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 44
365915 GGCTTTAGAG
* *
365925 AAGTTAGGAGAGAAAGTTATCCCCTATATGT-AAAGTTTTGTTA
1 AAGTTAGGACAGAAAGTTATCCCCTACATGTAAAAGTTTTGTTA
* *
365968 AAGTTAGGACTGAAAGTTGTCCCCTACATGTAAAAGTTTTGTT
1 AAGTTAGGACAGAAAGTTATCCCCTACATGTAAAAGTTTTGTT
366011 TGATGCACCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
43 27 0.71
44 11 0.29
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (44 bp):
AAGTTAGGACAGAAAGTTATCCCCTACATGTAAAAGTTTTGTTA
Found at i:366161 original size:14 final size:15
Alignment explanation
Indices: 366142--366179 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
366132 TATTACACAA
*
366142 TTTGCATTCT-TATT
1 TTTGCATTCTACATT
366156 TTTGCATTTCTACATT
1 TTTGCA-TTCTACATT
366172 TTTGCATT
1 TTTGCATT
366180 TTCATGTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 6 0.29
15 6 0.29
16 9 0.43
ACGTcount: A:0.16, C:0.16, G:0.08, T:0.61
Consensus pattern (15 bp):
TTTGCATTCTACATT
Found at i:366256 original size:20 final size:20
Alignment explanation
Indices: 366219--366261 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
366209 TATTTGTATC
* *
366219 TTTACATTTTTACGTTTGTA
1 TTTACATTTTCACGTTTGCA
**
366239 TTTACATTTTCATTTTTGCA
1 TTTACATTTTCACGTTTGCA
366259 TTT
1 TTT
366262 GCATCTTTGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.19, C:0.12, G:0.07, T:0.63
Consensus pattern (20 bp):
TTTACATTTTCACGTTTGCA
Found at i:366556 original size:42 final size:42
Alignment explanation
Indices: 366487--366570 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
366477 AGATATGATT
* * * * * *
366487 GATCAAGTAAAAAAGTTCCAGGGTGATTGAAATGAACAAATG
1 GATCAAGCAAAAAAATTCCAAGATGATTCAAAAGAACAAATG
*
366529 GATCAAGCAAAAAAATTCCAAGATGATTCAAAAGAGCAAATG
1 GATCAAGCAAAAAAATTCCAAGATGATTCAAAAGAACAAATG
366571 ACAAAACTAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.49, C:0.12, G:0.20, T:0.19
Consensus pattern (42 bp):
GATCAAGCAAAAAAATTCCAAGATGATTCAAAAGAACAAATG
Found at i:370793 original size:75 final size:75
Alignment explanation
Indices: 370704--370875 Score: 254
Period size: 75 Copynumber: 2.3 Consensus size: 75
370694 AACAAGAAAA
* * *
370704 AAATGTTGGGGCATGTTGAAAGCCCATTTCAATCAAAAATTGGAATTTTGACGCATTTTGAACGT
1 AAATGTTGGGGCATGTTGAAAGCCCATTTCAATCAAAAATAGAAATATTGACGCATTTTGAACGT
*
370769 TTATATCAGC
66 TCATATCAGC
* * *
370779 AAATGCTGGGGCATGCTGGAAGCCCATTTCAATCAAAAATAGAAATATTGACGCATTTTGAACGT
1 AAATGTTGGGGCATGTTGAAAGCCCATTTCAATCAAAAATAGAAATATTGACGCATTTTGAACGT
*
370844 TCGTATCAGC
66 TCATATCAGC
* *
370854 AATTGTTGGGGTATGTTGAAAG
1 AAATGTTGGGGCATGTTGAAAG
370876 TCTATATTAT
Statistics
Matches: 84, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
75 84 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.31
Consensus pattern (75 bp):
AAATGTTGGGGCATGTTGAAAGCCCATTTCAATCAAAAATAGAAATATTGACGCATTTTGAACGT
TCATATCAGC
Found at i:372155 original size:22 final size:22
Alignment explanation
Indices: 372129--372274 Score: 256
Period size: 22 Copynumber: 6.6 Consensus size: 22
372119 TACATATACA
372129 CTCTTCAAAGATGATAGATTCT
1 CTCTTCAAAGATGATAGATTCT
* *
372151 CTCTTCAAAGATGATAGATCCA
1 CTCTTCAAAGATGATAGATTCT
*
372173 CTCTTCAAAGATGATAGATCCT
1 CTCTTCAAAGATGATAGATTCT
372195 CTCTTCAAAGATGATAGATTCT
1 CTCTTCAAAGATGATAGATTCT
372217 CTCTTCAAAGATGATAGATTCT
1 CTCTTCAAAGATGATAGATTCT
372239 CTCTTCAAAGATGATAGATTCT
1 CTCTTCAAAGATGATAGATTCT
*
372261 CTTTTCAAAGATGA
1 CTCTTCAAAGATGA
372275 AAGCTTTATT
Statistics
Matches: 119, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 119 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (22 bp):
CTCTTCAAAGATGATAGATTCT
Found at i:373065 original size:123 final size:122
Alignment explanation
Indices: 372746--373078 Score: 486
Period size: 122 Copynumber: 2.7 Consensus size: 122
372736 TGATCGATGG
*
372746 ATCAACTTTTCCAGAGAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
1 ATCAACATTTCCAGA-AGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
* * * *
372811 ATGAGAAGAACTTGTTCAACCTTTTGCTCGATTCTTTCACAAAAGGAGATAGATTAAC
65 ATGAGAAGAACTTGTTCAACCTTTTGCTCGACTCTGTAACAAAAGGAGATAGATCAAC
* * * * *
372869 ACCAACATTTCCAGAAGTGTTCATAATGAAAAGAACCCATCTGAAGAGGAAGAAGAAGTTTATAA
1 ATCAACATTTCCAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
* * *
372934 TGAGAAGAATTTGTTCAACCTTTTGCTTGACTCTGTAACAGAAGGAGATAGATCAAC
66 TGAGAAGAACTTGTTCAACCTTTTGCTCGACTCTGTAACAAAAGGAGATAGATCAAC
* * *
372991 ATCAACATTTCCTGATAAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATA
1 ATCAACATTTCCAGA-AGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATA
* *
373056 ATGATAAGAACTTGTTCGACCTT
65 ATGAGAAGAACTTGTTCAACCTT
373079 AGCTTGATTC
Statistics
Matches: 185, Mismatches: 24, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
122 109 0.59
123 76 0.41
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (122 bp):
ATCAACATTTCCAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAA
TGAGAAGAACTTGTTCAACCTTTTGCTCGACTCTGTAACAAAAGGAGATAGATCAAC
Found at i:373158 original size:137 final size:135
Alignment explanation
Indices: 373007--373348 Score: 449
Period size: 137 Copynumber: 2.5 Consensus size: 135
372997 ATTTCCTGAT
* *
373007 AAAGTTCATAATGAGAAGAACTTATCTGAAGAGGAAGAAGAAGTTCATAATGATAAGAACTTGTT
1 AAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
* * * *
373072 CGACCTTAG-CTTGATTCATCACCTATGGAGTTGAATAAAAGAAGAACCTCCCTT-GAGGATCAA
66 CAACCTT-GCCTTAATTCATCACATATGAAGTTGAATAAAAG-A-AACC-CCCTTCGAGGATCAA
373135 CATTTTC-AG
127 C-TTTTCTAG
*
373144 AAAGTTCATAATGAGAAGAACTCATCTGAAAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
1 AAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
* * * ** *
373209 CAACCTTGCCTTAATTCATCACATATGAAGTTGAATCAATGACACCCTTTTCGAGGATCAGCTTT
66 CAACCTTGCCTTAATTCATCACATATGAAGTTGAATAAAAGAAACCCCCTTCGAGGATCAACTTT
373274 TCTAG
131 TCTAG
* * *
373279 AAGGAGTTCATAATGAGAAGAACTCATCTGACGAGGAAAAAG-AGTTCATAATGAGAAGAATTTG
1 AA--AGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTG
373343 TTCAAC
64 TTCAAC
373349 TTTTTGCTAG
Statistics
Matches: 183, Mismatches: 17, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
134 8 0.04
135 16 0.09
136 29 0.16
137 130 0.71
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.27
Consensus pattern (135 bp):
AAAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTT
CAACCTTGCCTTAATTCATCACATATGAAGTTGAATAAAAGAAACCCCCTTCGAGGATCAACTTT
TCTAG
Found at i:373585 original size:3 final size:3
Alignment explanation
Indices: 373569--373641 Score: 53
Period size: 3 Copynumber: 24.7 Consensus size: 3
373559 TTTTTATTTA
* * *
373569 TAT TATT TATT TAT TAT AAA TAT TAT TAT AAT TAT T-T TAT T-T TAT
1 TAT TA-T TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
373614 TA- TAT TAT AAT AAT AAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
373642 AATAATAAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
2 6 0.10
3 45 0.78
4 7 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:373635 original size:20 final size:20
Alignment explanation
Indices: 373610--373649 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
373600 TTATTTTATT
373610 TTATTA-TATTATAATAATAA
1 TTATTATTATTA-AATAATAA
373630 TTATTATTATTAAATAATAA
1 TTATTATTATTAAATAATAA
373650 ATAATTACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TTATTATTATTAAATAATAA
Found at i:376099 original size:67 final size:67
Alignment explanation
Indices: 376020--376156 Score: 247
Period size: 67 Copynumber: 2.0 Consensus size: 67
376010 AATCATTGAG
376020 TAAGTTTTTGTTTTATTATTAAAATTTTAAAACAAATAAATTAATCAGTAACATTATCGATATAT
1 TAAGTTTTTGTTTTATTATTAAAATTTTAAAACAAATAAATTAATCAGTAACATTATCGATATAT
376085 AA
66 AA
* * *
376087 TAAGTTTTTGTTTTCTTATTAAAATTTTAAAACAAATAAATTAGTCAGTAACGTTATCGATATAT
1 TAAGTTTTTGTTTTATTATTAAAATTTTAAAACAAATAAATTAATCAGTAACATTATCGATATAT
376152 AA
66 AA
376154 TAA
1 TAA
376157 ATCGATCATT
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (67 bp):
TAAGTTTTTGTTTTATTATTAAAATTTTAAAACAAATAAATTAATCAGTAACATTATCGATATAT
AA
Found at i:377218 original size:2 final size:2
Alignment explanation
Indices: 377211--377247 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
377201 TATAAGTATC
377211 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
377248 GATAATTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:377427 original size:22 final size:24
Alignment explanation
Indices: 377401--377448 Score: 82
Period size: 22 Copynumber: 2.1 Consensus size: 24
377391 TAAAGATAAG
377401 ATTAAATATCCA-TAT-TATATAT
1 ATTAAATATCCATTATATATATAT
377423 ATTAAATATCCATTATATATATAT
1 ATTAAATATCCATTATATATATAT
377447 AT
1 AT
377449 ATATATGTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 12 0.50
23 3 0.12
24 9 0.38
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (24 bp):
ATTAAATATCCATTATATATATAT
Found at i:377439 original size:20 final size:21
Alignment explanation
Indices: 377401--377444 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
377391 TAAAGATAAG
377401 ATTAAATATCCATATTATATAT
1 ATTAAATATCCA-ATTATATAT
377423 ATTAAATATCC-ATTATATAT
1 ATTAAATATCCAATTATATAT
377443 AT
1 AT
377445 ATATATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 11 0.50
22 11 0.50
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (21 bp):
ATTAAATATCCAATTATATAT
Found at i:377802 original size:2 final size:2
Alignment explanation
Indices: 377795--377825 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
377785 CAATACATAC
377795 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
377826 GTATGGTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:383461 original size:18 final size:18
Alignment explanation
Indices: 383438--383490 Score: 97
Period size: 18 Copynumber: 2.9 Consensus size: 18
383428 TCACGGAGTG
383438 TAAAATTACTGATGAGAA
1 TAAAATTACTGATGAGAA
383456 TAAAATTACTGATGAGAA
1 TAAAATTACTGATGAGAA
*
383474 TAAAATTACTGACGAGA
1 TAAAATTACTGATGAGA
383491 TAAGATTATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.49, C:0.08, G:0.17, T:0.26
Consensus pattern (18 bp):
TAAAATTACTGATGAGAA
Found at i:383645 original size:11 final size:11
Alignment explanation
Indices: 383629--383654 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
383619 AAACAAGTTA
383629 AATTTTACTAT
1 AATTTTACTAT
383640 AATTTTACTAT
1 AATTTTACTAT
383651 AATT
1 AATT
383655 AATTTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
AATTTTACTAT
Found at i:383707 original size:52 final size:54
Alignment explanation
Indices: 383605--383708 Score: 126
Period size: 54 Copynumber: 2.0 Consensus size: 54
383595 ATTCTTATTA
* * *
383605 TATATATTTTTTTTAAACAAGTTAAATTTTACTATAATTTTACTATAATTAATT
1 TATATATTTTTTTTAAACAAATTAAATTTCACTATAATTTTACTAAAATTAATT
*
383659 TATATATTTTCTTTTAAA-AAATTAAA-TTCATTA-AATTTTTA-TAAAATTAA
1 TATATATTTT-TTTTAAACAAATTAAATTTCACTATAA-TTTTACTAAAATTAA
383709 AAAGATAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
52 10 0.23
53 10 0.23
54 17 0.39
55 7 0.16
ACGTcount: A:0.42, C:0.05, G:0.01, T:0.52
Consensus pattern (54 bp):
TATATATTTTTTTTAAACAAATTAAATTTCACTATAATTTTACTAAAATTAATT
Found at i:387228 original size:109 final size:108
Alignment explanation
Indices: 386994--387234 Score: 244
Period size: 109 Copynumber: 2.2 Consensus size: 108
386984 TTTATCGTAG
*
386994 TTTTACATTTTAGTCACATGTAGGGACCAAATCTATTATTTTCACTTTTCTTCGCATGTTATATA
1 TTTTACA-TTTAGTCATATGTAGGGACCAAATCTATTATTTTCACTTTTCTTCGCATGTTATATA
* * * *
387059 ATTTTTGGTATATTCACTATTCAGTCCCTCTAACTTTAGCGTGT
65 ATTTTAGGTATATTCACTATTCAGTCCCTATAACTTTAGCATAT
* * * *
387103 TTTTGCATTCTGGTCATATGT-GAGGACTGAAAT-TGTTATTTTTC-CTTTTCCTT-GCATGTTA
1 TTTTACATT-TAGTCATATGTAG-GGAC-CAAATCTATTA-TTTTCACTTTT-CTTCGCATGTTA
* *
387164 TA-ATATTATTAGGT-TATAT-ACTATTTAGTCCCTATAAGTTTAGCATAT
61 TATA-ATT-TTAGGTATAT-TCACTATTCAGTCCCTATAACTTTAGCATAT
387212 TTTTACACTTTAGTCATATGTAG
1 TTTTACA-TTTAGTCATATGTAG
387235 TGACTTTTTA
Statistics
Matches: 109, Mismatches: 13, Indels: 19
0.77 0.09 0.13
Matches are distributed among these distances:
108 4 0.04
109 84 0.77
110 21 0.19
ACGTcount: A:0.24, C:0.15, G:0.13, T:0.47
Consensus pattern (108 bp):
TTTTACATTTAGTCATATGTAGGGACCAAATCTATTATTTTCACTTTTCTTCGCATGTTATATAA
TTTTAGGTATATTCACTATTCAGTCCCTATAACTTTAGCATAT
Found at i:389036 original size:2 final size:2
Alignment explanation
Indices: 389029--389054 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
389019 TACCCGATTC
389029 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
389055 TTAAATCAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:389163 original size:2 final size:2
Alignment explanation
Indices: 389156--389187 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
389146 TAATATTTGA
389156 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
389188 TAAAGTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:390735 original size:20 final size:21
Alignment explanation
Indices: 390710--390752 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
390700 ATATTCTGAT
*
390710 AATTTTAAAATT-TTTATTTA
1 AATTTTAAAATTATATATTTA
390730 AATTTTAAAATTATATATTTA
1 AATTTTAAAATTATATATTTA
390751 AA
1 AA
390753 AAACACACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
AATTTTAAAATTATATATTTA
Found at i:396365 original size:35 final size:33
Alignment explanation
Indices: 396325--396409 Score: 91
Period size: 35 Copynumber: 2.5 Consensus size: 33
396315 GTATTTCAGT
396325 TAATTTTGTT-TATTACCATTTAATATCAGTTATTG
1 TAATTTTGTTATATTACCATTTAATA-C--TTATTG
*
396360 TAATTTGGTTATCATTTACCATTTAATACTTATTG
1 TAATTTTGTTAT-A-TTACCATTTAATACTTATTG
* *
396395 TAAGTTTGTTGTATT
1 TAATTTTGTTATATT
396410 TAAAATTATT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
33 2 0.05
34 1 0.02
35 24 0.56
36 1 0.02
37 2 0.05
38 13 0.30
ACGTcount: A:0.27, C:0.08, G:0.11, T:0.54
Consensus pattern (33 bp):
TAATTTTGTTATATTACCATTTAATACTTATTG
Found at i:404469 original size:50 final size:49
Alignment explanation
Indices: 404359--404481 Score: 165
Period size: 50 Copynumber: 2.5 Consensus size: 49
404349 TTCCATATTC
* * *
404359 TTCCATACTCTTCCATAAGGTTCCACACATCTCCAAATATTCCAAAGGA
1 TTCCACACTCTTCCATAAGCTTCTACACATCTCCAAATATTCCAAAGGA
* * * *
404408 GTCCACACTCTTCCATAAGCTTCTACACATCTCTAGAATATTTCAGAGGA
1 TTCCACACTCTTCCATAAGCTTCTACACATCTCCA-AATATTCCAAAGGA
*
404458 TTCCACACTCTTCCACAAGCTTCT
1 TTCCACACTCTTCCATAAGCTTCT
404482 GGAGAGTTAT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
49 30 0.47
50 34 0.53
ACGTcount: A:0.29, C:0.32, G:0.09, T:0.30
Consensus pattern (49 bp):
TTCCACACTCTTCCATAAGCTTCTACACATCTCCAAATATTCCAAAGGA
Found at i:409453 original size:27 final size:27
Alignment explanation
Indices: 409422--409476 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
409412 GAGGAATTAT
409422 TGGAAGTTGAATTGAAGATCAAAGGCG
1 TGGAAGTTGAATTGAAGATCAAAGGCG
409449 TGGAAGTTGAATTGAAGATCAAAGGCG
1 TGGAAGTTGAATTGAAGATCAAAGGCG
409476 T
1 T
409477 TCGAATGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.07, G:0.33, T:0.24
Consensus pattern (27 bp):
TGGAAGTTGAATTGAAGATCAAAGGCG
Found at i:409487 original size:27 final size:27
Alignment explanation
Indices: 409424--409488 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
409414 GGAATTATTG
* *
409424 GAAGTTGAATTGAAGATCAAAGGCGTG
1 GAAGTGGAATTGAAGATCAAAGGCGTC
*
409451 GAAGTTGAATTGAAGATCAAAGGCGTTC
1 GAAGTGGAATTGAAGATCAAAGGCG-TC
409479 GAA-TGGAATT
1 GAAGTGGAATT
409489 TTTATGGTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 31 0.89
28 4 0.11
ACGTcount: A:0.37, C:0.08, G:0.31, T:0.25
Consensus pattern (27 bp):
GAAGTGGAATTGAAGATCAAAGGCGTC
Found at i:410541 original size:9 final size:9
Alignment explanation
Indices: 410529--410555 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
410519 TAAAAATGAA
410529 TACCAAAAT
1 TACCAAAAT
410538 TACCAAAAT
1 TACCAAAAT
410547 TACCAAAAT
1 TACCAAAAT
410556 ACCCTTGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (9 bp):
TACCAAAAT
Found at i:413320 original size:50 final size:50
Alignment explanation
Indices: 413197--413321 Score: 162
Period size: 50 Copynumber: 2.5 Consensus size: 50
413187 TTCCACTCCC
* * * *
413197 TTCCATACTCTTCCATAATG-TTCCACGTATCTCCAGAATATTCCAAAGGA
1 TTCCACACTCTTCCATAA-GCTTCTAAGTATCTCCAAAATATTCCAAAGGA
* * *
413247 GTCCACACTCTTCCATAAGCTTCTAAGTATCTTCAAAATATTCCAGAGGA
1 TTCCACACTCTTCCATAAGCTTCTAAGTATCTCCAAAATATTCCAAAGGA
*
413297 TTCCACACTCTTCCACAAGCTTCTA
1 TTCCACACTCTTCCATAAGCTTCTA
413322 GAGAGTTCTA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
49 1 0.02
50 64 0.98
ACGTcount: A:0.30, C:0.30, G:0.10, T:0.31
Consensus pattern (50 bp):
TTCCACACTCTTCCATAAGCTTCTAAGTATCTCCAAAATATTCCAAAGGA
Found at i:415533 original size:14 final size:13
Alignment explanation
Indices: 415494--415536 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
415484 CATATGTAAT
* *
415494 TTAAGTAATTTAT
1 TTAAGTGATTTAA
415507 TTAAGTGATTTAA
1 TTAAGTGATTTAA
415520 TTAAGTGCATTTAA
1 TTAAGTG-ATTTAA
415534 TTA
1 TTA
415537 GATTTAAGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 18 0.67
14 9 0.33
ACGTcount: A:0.37, C:0.02, G:0.12, T:0.49
Consensus pattern (13 bp):
TTAAGTGATTTAA
Found at i:418356 original size:60 final size:61
Alignment explanation
Indices: 418291--418406 Score: 162
Period size: 61 Copynumber: 1.9 Consensus size: 61
418281 GTTAGGTGAT
* * *
418291 TATTTTGTTATTTTTAATAGCCGA-GGGACTCAATAAAGAAATGGCCTATAGTTAAGAGAC
1 TATTTTGTAAGTTTTAATAGCCGAGGGGACTCAATAAAGAAATGGCCTATAATTAAGAGAC
* ** *
418351 TATTTTGTAAGTTTTAATAGTCGAGGGGACTCAATAAATCAATGTCCTATAATTAA
1 TATTTTGTAAGTTTTAATAGCCGAGGGGACTCAATAAAGAAATGGCCTATAATTAA
418407 AGGACCATTT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
60 21 0.44
61 27 0.56
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.35
Consensus pattern (61 bp):
TATTTTGTAAGTTTTAATAGCCGAGGGGACTCAATAAAGAAATGGCCTATAATTAAGAGAC
Found at i:427329 original size:17 final size:17
Alignment explanation
Indices: 427289--427332 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
427279 CAACCTATTC
*
427289 TAATCAATCCCATCTAT
1 TAATCATTCCCATCTAT
427306 TAATCATTCCCATCTAT
1 TAATCATTCCCATCTAT
*
427323 TGATCATTCC
1 TAATCATTCC
427333 TAATGTAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.30, C:0.30, G:0.02, T:0.39
Consensus pattern (17 bp):
TAATCATTCCCATCTAT
Found at i:429414 original size:33 final size:33
Alignment explanation
Indices: 429346--429414 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
429336 AAGTTATTTC
* *
429346 AATAATTTAATTTTTTTCAAATTAATTTGAATA
1 AATAATTTAATTTTTTTCAAATTAAGTCGAATA
429379 AATAATTTAA-TTTTTT-AAATTTAAGTCGAATTA
1 AATAATTTAATTTTTTTCAAA-TTAAGTCGAA-TA
429412 AAT
1 AAT
429415 TTTAATAACT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 3 0.09
32 14 0.44
33 15 0.47
ACGTcount: A:0.43, C:0.03, G:0.04, T:0.49
Consensus pattern (33 bp):
AATAATTTAATTTTTTTCAAATTAAGTCGAATA
Found at i:429846 original size:16 final size:16
Alignment explanation
Indices: 429822--429852 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
429812 TCTGTAATGG
*
429822 TCGATGACGATGATGA
1 TCGACGACGATGATGA
429838 TCGACGACGATGATG
1 TCGACGACGATGATG
429853 GGTTAGAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.23
Consensus pattern (16 bp):
TCGACGACGATGATGA
Found at i:434024 original size:24 final size:26
Alignment explanation
Indices: 433997--434055 Score: 68
Period size: 29 Copynumber: 2.2 Consensus size: 26
433987 TCCTACATGG
*
433997 TTAATTT-A-CTTCACTGTAATTTGT
1 TTAATTTCATCTTCAATGTAATTTGT
434021 TTAATTGCTTCATCTTCAATGTAATTTGT
1 TTAA-T--TTCATCTTCAATGTAATTTGT
434050 TTAATT
1 TTAATT
434056 GTTTATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
24 4 0.14
25 1 0.03
26 1 0.03
27 2 0.07
28 2 0.07
29 19 0.66
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.54
Consensus pattern (26 bp):
TTAATTTCATCTTCAATGTAATTTGT
Found at i:434213 original size:20 final size:20
Alignment explanation
Indices: 434153--434215 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 20
434143 GCTTGTTATT
434153 TTGTTAAGGTAATCTGTTTAA
1 TTGTT-AGGTAATCTGTTTAA
** *
434174 TTGTTTATCTATAATATGTTTAA
1 TTG-TTA--GGTAATCTGTTTAA
434197 TTGTTAGGTAATCTGTTTA
1 TTGTTAGGTAATCTGTTTA
434216 GAATTTAGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
20 10 0.30
21 4 0.12
22 5 0.15
23 14 0.42
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.52
Consensus pattern (20 bp):
TTGTTAGGTAATCTGTTTAA
Found at i:437252 original size:16 final size:16
Alignment explanation
Indices: 437214--437261 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 16
437204 ATATTTTCAT
**
437214 ATATAAA-TATATCAA
1 ATATAAATTATAAAAA
437229 AT-TAAATTATAAAAA
1 ATATAAATTATAAAAA
437244 ATATAAATTATAATAAA
1 ATATAAATTATAA-AAA
437261 A
1 A
437262 ATACAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 4 0.14
15 10 0.36
16 10 0.36
17 4 0.14
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
ATATAAATTATAAAAA
Found at i:437318 original size:115 final size:112
Alignment explanation
Indices: 437166--437398 Score: 423
Period size: 116 Copynumber: 2.1 Consensus size: 112
437156 CATTATATTG
437166 TAAATTAAAAATATTATTTAATTATTTTAAGTGTATTAATATTTTCATATAT-AAATATATCAAA
1 TAAATTAAAAATATTATTTAATTATTTTAAGTGTATTAATATTTTCATATATAAAATATATCAAA
437230 TTAAATTATAAAAAATATAAATTATAATAAAAATACAAAATACAAAA
66 TTAAATTATAAAAAATATAAATTATAATAAAAATACAAAATACAAAA
437277 TAAATTAAAAATATATTAATTTAAATTATTTTAAGTGTATTAATATTTTCATATATAAAATATAT
1 TAAATT-AAAA-ATATT-ATTT-AATTATTTTAAGTGTATTAATATTTTCATATATAAAATATAT
437342 CAAATTAAATTATAAAAAATATAAATTATAATAAAAATACAAAATACAAAA
62 CAAATTAAATTATAAAAAATATAAATTATAATAAAAATACAAAATACAAAA
437393 TAAATT
1 TAAATT
437399 TTAAAAGTTT
Statistics
Matches: 117, Mismatches: 0, Indels: 5
0.96 0.00 0.04
Matches are distributed among these distances:
111 6 0.05
112 4 0.03
113 5 0.04
114 4 0.03
115 33 0.28
116 65 0.56
ACGTcount: A:0.56, C:0.03, G:0.02, T:0.39
Consensus pattern (112 bp):
TAAATTAAAAATATTATTTAATTATTTTAAGTGTATTAATATTTTCATATATAAAATATATCAAA
TTAAATTATAAAAAATATAAATTATAATAAAAATACAAAATACAAAA
Found at i:437368 original size:16 final size:16
Alignment explanation
Indices: 437329--437377 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 16
437319 ATATTTTCAT
* **
437329 ATATAAAATATATCAA
1 ATATAAATTATAAAAA
437345 AT-TAAATTATAAAAA
1 ATATAAATTATAAAAA
437360 ATATAAATTATAATAAA
1 ATATAAATTATAA-AAA
437377 A
1 A
437378 ATACAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 12 0.43
16 12 0.43
17 4 0.14
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
ATATAAATTATAAAAA
Found at i:440953 original size:188 final size:188
Alignment explanation
Indices: 440463--441032 Score: 831
Period size: 188 Copynumber: 3.0 Consensus size: 188
440453 TTGAATTATT
*
440463 TTATCATGTACCAATGTCATCCTTCATCGATCATCTTTTTTTTCTTTAAATCACCGTCTCGTCTC
1 TTATCATGTACCAATGTCATCCTTCATCGATCATCTTTTTTCTCTTTAAATCACCGTCTCGTCTC
* * * * * * *
440528 TCCCATCGTATTACATCTTTAAGTATAGCAAATCAAGCCACTAATATCAAGCTTCTAATAGATTC
66 TCCCATCGTATGACACCTTTAAGTATAGCAAATCAAGCCAATACTATCAAGCTTATGATAGATCC
* *
440593 AAGAGC-TTTTCTAAAGGTATCATCGTCGTTTCAACCATCTCAGATTCAATAAGAGTCC
131 AAGAGCTTTTTC-AAAGGTATCATCGTCGTTTCAACCATCTCAGATTCAGTAAGAGCCC
* *
440651 TTATCATGTACCAATATCATCCTTCATCGATCATCTTTTTTCTTTCTTTAAATCACTGTCTCGTC
1 TTATCATGTACCAATGTCATCCTTCATCGATCATCTTTTTTC--TCTTTAAATCACCGTCTCGTC
*
440716 TCTCCCATTGTATGACACCTTTAAGTATAGCAAATCAAG-CAACTACTATCAAGCTTATGATAGA
64 TCTCCCATCGTATGACACCTTTAAGTATAGCAAATCAAGCCAA-TACTATCAAGCTTATGATAGA
* * * * *
440780 TCCAAGAGCTTTTTCAAAGGTATCATTGTCATTTCTACCTTCTCAGATCCCAGTAAGAGCCC
128 TCCAAGAGCTTTTTCAAAGGTATCATCGTCGTTTCAACCATCTCAGAT-TCAGTAAGAGCCC
* * *
440842 TTATTATGTACCAACGTCAACCTTCATCGATCAT-TTTTTTCTCTTTAAATCACCGTCTCGTCTC
1 TTATCATGTACCAATGTCATCCTTCATCGATCATCTTTTTTCTCTTTAAATCACCGTCTCGTCTC
*
440906 TCCCATCGTATGACACCTTTAAGTATAGCAAATCAAGCCAATACTATCAAGCTTTTGATAGATCC
66 TCCCATCGTATGACACCTTTAAGTATAGCAAATCAAGCCAATACTATCAAGCTTATGATAGATCC
* * * * *
440971 AAGAGCTTTTCCAAAGGTATCATCATTGTTTCCACCATCTCAGATTTAGTAAGAGCCC
131 AAGAGCTTTTTCAAAGGTATCATCGTCGTTTCAACCATCTCAGATTCAGTAAGAGCCC
441029 TTAT
1 TTAT
441033 TTCCTTTCAT
Statistics
Matches: 342, Mismatches: 34, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
187 15 0.04
188 159 0.46
189 5 0.01
190 118 0.35
191 45 0.13
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (188 bp):
TTATCATGTACCAATGTCATCCTTCATCGATCATCTTTTTTCTCTTTAAATCACCGTCTCGTCTC
TCCCATCGTATGACACCTTTAAGTATAGCAAATCAAGCCAATACTATCAAGCTTATGATAGATCC
AAGAGCTTTTTCAAAGGTATCATCGTCGTTTCAACCATCTCAGATTCAGTAAGAGCCC
Found at i:442137 original size:2 final size:2
Alignment explanation
Indices: 442130--442166 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
442120 GATAAAGTTT
442130 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
442167 TCATTCGTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:444128 original size:21 final size:23
Alignment explanation
Indices: 444072--444128 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 23
444062 ATTAAATGAA
444072 TATTGATA--CTCCTCATAGCAG
1 TATTGATACCCTCCTCATAGCAG
** *
444093 TATTGATACTATCCTCATAG-GG
1 TATTGATACCCTCCTCATAGCAG
444115 TA-TGATACCCTCCT
1 TATTGATACCCTCCT
444129 TGATATTGAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
21 18 0.60
22 3 0.10
23 9 0.30
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (23 bp):
TATTGATACCCTCCTCATAGCAG
Found at i:461643 original size:23 final size:23
Alignment explanation
Indices: 461611--461659 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
461601 CGATAAAATA
*
461611 AAATAGGCGCTACCTATTACGTT
1 AAATAAGCGCTACCTATTACGTT
* *
461634 AAATAAGCGCTATCTATTATGTT
1 AAATAAGCGCTACCTATTACGTT
461657 AAA
1 AAA
461660 CTACCTACCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (23 bp):
AAATAAGCGCTACCTATTACGTT
Found at i:461808 original size:74 final size:75
Alignment explanation
Indices: 461634--461801 Score: 248
Period size: 74 Copynumber: 2.3 Consensus size: 75
461624 CTATTACGTT
* * * * *
461634 AAATAAGCGCTATCTATTATGTTAAACTACCTACCGGTTTGTTTGAAGGTTACTAATAATGTAAA
1 AAATAGGCGCTACCTATTATGTTAAAATACCTACAGGTTTGTTTGAAGGCTACTAATAATGTAAA
*
461699 CGGTATAATA
66 CGGTAAAATA
* * *
461709 AAATAGGCGCTACATATTATGTTAAAATATCTACAGGTTT-TTTTAAGGCTACTAATAATGTAAA
1 AAATAGGCGCTACCTATTATGTTAAAATACCTACAGGTTTGTTTGAAGGCTACTAATAATGTAAA
461773 CGGTAAAATA
66 CGGTAAAATA
461783 AAATAGGCGCTACCTATTA
1 AAATAGGCGCTACCTATTA
461802 CATTAAATAA
Statistics
Matches: 83, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
74 49 0.59
75 34 0.41
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (75 bp):
AAATAGGCGCTACCTATTATGTTAAAATACCTACAGGTTTGTTTGAAGGCTACTAATAATGTAAA
CGGTAAAATA
Found at i:461831 original size:97 final size:98
Alignment explanation
Indices: 461723--461906 Score: 253
Period size: 98 Copynumber: 1.9 Consensus size: 98
461713 AGGCGCTACA
* * * *
461723 TATTATGTTAAAATATCTACAGGTTT-TTTTAAGGCTACTAATAATGTAAACGGTAAAATAAAAT
1 TATTATATTAAAATACCTACAGATTTGTTTGAAGGCTACTAATAATGTAAACGGTAAAATAAAAT
*
461787 AGGCGCTACCTATTACATTAAATAAGTGACACC
66 AGACGCTACCTATTACATTAAATAAGTGACACC
* ** * * *
461820 TATTATATTAAACTACCTACCTATTTGTTTGAAGGTTGCTAATAATGTCAACGGTAAAATAAAAT
1 TATTATATTAAAATACCTACAGATTTGTTTGAAGGCTACTAATAATGTAAACGGTAAAATAAAAT
*
461885 AGACGTTACCTATTACATTAAA
66 AGACGCTACCTATTACATTAAA
461907 ATACCTACCG
Statistics
Matches: 74, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
97 20 0.27
98 54 0.73
ACGTcount: A:0.40, C:0.14, G:0.12, T:0.34
Consensus pattern (98 bp):
TATTATATTAAAATACCTACAGATTTGTTTGAAGGCTACTAATAATGTAAACGGTAAAATAAAAT
AGACGCTACCTATTACATTAAATAAGTGACACC
Found at i:461875 original size:172 final size:173
Alignment explanation
Indices: 461573--461974 Score: 583
Period size: 172 Copynumber: 2.3 Consensus size: 173
461563 TACCTATCGA
* * *
461573 TTTGTTTAAATGCTACTAATAATGTAAACGATAAAATAAAATAGGCGCTACCTATTACGTTAAAT
1 TTTGTTTAAAGGCTACTAATAATGTAAACGGTAAAATAAAATAGGCGCTACCTATTACATTAAAT
* * *
461638 AAGCGCTATCTATTATGTTAAACTACCTACCGGTTTGTTTGAAGGTTACTAATAATGTAAACGGT
66 AAGCGCTACCTATTATATTAAACTACCTACCGATTTGTTTGAAGGTTACTAATAATGTAAACGGT
* * ** *
461703 ATAATAAAATAGGCGCTACATATTATGTTAAAATATCTACAGG
131 AAAATAAAATAGACGCTACATATTACATTAAAATACCTACAGG
*
461746 TTT-TTTTAAGGCTACTAATAATGTAAACGGTAAAATAAAATAGGCGCTACCTATTACATTAAAT
1 TTTGTTTAAAGGCTACTAATAATGTAAACGGTAAAATAAAATAGGCGCTACCTATTACATTAAAT
* * * *
461810 AAGTGAC-ACCTATTATATTAAACTACCTACCTATTTGTTTGAAGGTTGCTAATAATGTCAACGG
66 AAGCG-CTACCTATTATATTAAACTACCTACCGATTTGTTTGAAGGTTACTAATAATGTAAACGG
* * *
461874 TAAAATAAAATAGACGTTACCTATTACATTAAAATACCTACCGG
130 TAAAATAAAATAGACGCTACATATTACATTAAAATACCTACAGG
** *
461918 TTTGTTTAAAGATTACTAATAATGTAAACGGTAAAATAAAATAGGAGCTACCTATTA
1 TTTGTTTAAAGGCTACTAATAATGTAAACGGTAAAATAAAATAGGCGCTACCTATTA
461975 TGTTATTATG
Statistics
Matches: 204, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
172 151 0.74
173 53 0.26
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (173 bp):
TTTGTTTAAAGGCTACTAATAATGTAAACGGTAAAATAAAATAGGCGCTACCTATTACATTAAAT
AAGCGCTACCTATTATATTAAACTACCTACCGATTTGTTTGAAGGTTACTAATAATGTAAACGGT
AAAATAAAATAGACGCTACATATTACATTAAAATACCTACAGG
Found at i:461924 original size:75 final size:75
Alignment explanation
Indices: 461817--461974 Score: 219
Period size: 75 Copynumber: 2.1 Consensus size: 75
461807 AATAAGTGAC
* * * * * * *
461817 ACCTATTATATTAAACTACCTACCTATTTGTTTGAAGGTTGCTAATAATGTCAACGGTAAAATAA
1 ACCTATTACATTAAAATACCTACCGATTTGTTTAAAGATTACTAATAATGTAAACGGTAAAATAA
*
461882 AATA-GACGTT
66 AATAGGA-GCT
*
461892 ACCTATTACATTAAAATACCTACCGGTTTGTTTAAAGATTACTAATAATGTAAACGGTAAAATAA
1 ACCTATTACATTAAAATACCTACCGATTTGTTTAAAGATTACTAATAATGTAAACGGTAAAATAA
461957 AATAGGAGCT
66 AATAGGAGCT
461967 ACCTATTA
1 ACCTATTA
461975 TGTTATTATG
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
75 71 0.97
76 2 0.03
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.33
Consensus pattern (75 bp):
ACCTATTACATTAAAATACCTACCGATTTGTTTAAAGATTACTAATAATGTAAACGGTAAAATAA
AATAGGAGCT
Found at i:463640 original size:3 final size:3
Alignment explanation
Indices: 463634--463701 Score: 111
Period size: 3 Copynumber: 22.7 Consensus size: 3
463624 CTCCATTTCC
*
463634 TAT TAT TAT TATT TAT TAT TAT TAT TAT GAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
463680 TAT TAT TAT TAT T-T TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
463702 CAAATGGGCC
Statistics
Matches: 61, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
2 2 0.03
3 56 0.92
4 3 0.05
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:464175 original size:21 final size:21
Alignment explanation
Indices: 464133--464180 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
464123 ACAGAGAGAC
*
464133 AAAACCGAGAGCAAAGATACA
1 AAAACCGAGAGCAAAGACACA
*
464154 AAAACGGAGAGCAACA-ACACA
1 AAAACCGAGAGCAA-AGACACA
*
464175 ATAACC
1 AAAACC
464181 AGCAAAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 21 0.95
22 1 0.05
ACGTcount: A:0.56, C:0.23, G:0.17, T:0.04
Consensus pattern (21 bp):
AAAACCGAGAGCAAAGACACA
Found at i:465136 original size:27 final size:27
Alignment explanation
Indices: 465106--465163 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
465096 ATATATATAT
465106 AATAAATAATAATTT-ATATTT-TTTTTC
1 AATAAAT--TAATTTAATATTTATTTTTC
*
465133 AATAAATTATTTTAATATTTATTTTTC
1 AATAAATTAATTTAATATTTATTTTTC
465160 AATA
1 AATA
465164 TCGAAGAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 5 0.18
26 6 0.21
27 17 0.61
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55
Consensus pattern (27 bp):
AATAAATTAATTTAATATTTATTTTTC
Found at i:465780 original size:18 final size:18
Alignment explanation
Indices: 465749--465789 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
465739 CTTTTCAAAA
465749 ATTTT-ATATATTTAT-T
1 ATTTTCATATATTTATAT
465765 ATTTTCATAGTATTTATAT
1 ATTTTCATA-TATTTATAT
465784 ATTTTC
1 ATTTTC
465790 TTATTAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.23
17 3 0.14
18 7 0.32
19 7 0.32
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (18 bp):
ATTTTCATATATTTATAT
Found at i:467900 original size:7 final size:7
Alignment explanation
Indices: 467865--467905 Score: 57
Period size: 7 Copynumber: 5.9 Consensus size: 7
467855 TTTTCATATA
467865 TGCATTT
1 TGCATTT
467872 T-CATTT
1 TGCATTT
467878 TGCATCTT
1 TGCAT-TT
467886 TGCATTT
1 TGCATTT
*
467893 TTCATTT
1 TGCATTT
467900 TGCATT
1 TGCATT
467906 CATACTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 6 0.20
7 17 0.57
8 7 0.23
ACGTcount: A:0.15, C:0.17, G:0.10, T:0.59
Consensus pattern (7 bp):
TGCATTT
Found at i:470472 original size:19 final size:20
Alignment explanation
Indices: 470448--470486 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
470438 TCATCCAGCA
470448 AAGAAAGAA-GAAA-AAAAAG
1 AAGAAA-AAGGAAAGAAAAAG
470467 AAGAAAAAGGAAAGAAAAAG
1 AAGAAAAAGGAAAGAAAAAG
470487 GAAAATTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 2 0.11
19 10 0.56
20 6 0.33
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (20 bp):
AAGAAAAAGGAAAGAAAAAG
Found at i:473194 original size:114 final size:114
Alignment explanation
Indices: 472645--473191 Score: 851
Period size: 114 Copynumber: 4.8 Consensus size: 114
472635 TCATAGTAGA
472645 AGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCAA
1 AGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCC-A
* *
472710 AAACCAATCATTGAATTTGAAAAGATCCATGTGCTCATAGTAGAAATAAGA
65 AAACCAATCATTGGATTTG-AAAGATCCATGTGCTCATAGTAGAAATAAGG
*
472761 AGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGGTATGAACCCCAA
1 AGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCAA
* *
472826 AATCAATCATTGGATTTGAAAGATCCATGTGCTCATGGTAGAAATAAGG
66 AACCAATCATTGGATTTGAAAGATCCATGTGCTCATAGTAGAAATAAGG
* * * * *
472875 AGGCCCAATAACATCTTCTGGAGGTGTTCTTTAAGTTATCTGATCTGATTTGGTATGAACCCCAA
1 AGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCAA
** *
472940 AATTAATCATTGGATTTGAAAGATCCATGTGCTCATGGTAGAAATAAGG
66 AACCAATCATTGGATTTGAAAGATCCATGTGCTCATAGTAGAAATAAGG
* * *
472989 AGGCCCAATAGCATCTTCTGGAGGTGTTCTTTGAGTTATCTGATCTAGTTTGGTATGAACCCCAA
1 AGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCAA
** *
473054 AACCAATCATTGGATTTGAAAGATGAATTTGCTCATAGTAGAAATAAGG
66 AACCAATCATTGGATTTGAAAGATCCATGTGCTCATAGTAGAAATAAGG
* * * * *
473103 AGACTCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTCGGTAGGAACCTCAG
1 AGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCAA
*
473168 AACCAATCATTGGAGTTGAAAGAT
66 AACCAATCATTGGATTTGAAAGAT
473192 GAACTGCATG
Statistics
Matches: 402, Mismatches: 29, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
114 322 0.80
115 18 0.04
116 62 0.15
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31
Consensus pattern (114 bp):
AGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCCCAA
AACCAATCATTGGATTTGAAAGATCCATGTGCTCATAGTAGAAATAAGG
Found at i:475446 original size:22 final size:22
Alignment explanation
Indices: 475415--475469 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
475405 ATCTACACTC
*
475415 TTCAAAGATGATAGATTCCCTT
1 TTCAAAGATGACAGATTCCCTT
*
475437 TAT-AAAGATGACAGATTCTCTT
1 T-TCAAAGATGACAGATTCCCTT
475459 TTCAAAGATGA
1 TTCAAAGATGA
475470 AAGCTTTATC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 1 0.03
22 27 0.93
23 1 0.03
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
Consensus pattern (22 bp):
TTCAAAGATGACAGATTCCCTT
Found at i:475963 original size:20 final size:20
Alignment explanation
Indices: 475940--476004 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
475930 TCTGAAGAAG
*
475940 GAAGAAGAAGTTCATAATGA
1 GAAGAACAAGTTCATAATGA
** *
475960 GAAGAACTCG-TCAT-CTGAA
1 GAAGAACAAGTTCATAATG-A
* *
475979 GAAGAATAAATTCATAATGA
1 GAAGAACAAGTTCATAATGA
475999 GAAGAA
1 GAAGAA
476005 TTTGTTCAAC
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
18 2 0.06
19 11 0.33
20 18 0.55
21 2 0.06
ACGTcount: A:0.49, C:0.09, G:0.22, T:0.20
Consensus pattern (20 bp):
GAAGAACAAGTTCATAATGA
Found at i:475994 original size:39 final size:40
Alignment explanation
Indices: 475908--476004 Score: 130
Period size: 40 Copynumber: 2.5 Consensus size: 40
475898 TGCTAGGTCG
475908 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
*
475948 AGTTCATAATGAGAAGAACTCGTCATCTGAAGAA-GAA-TA-A
1 AGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGAAGAAGA
475988 A-TTCATAATGAGAAGAA
1 AGTTCATAATGAGAAGAA
476005 TTTGTTCAAC
Statistics
Matches: 53, Mismatches: 1, Indels: 7
0.87 0.02 0.11
Matches are distributed among these distances:
39 16 0.30
40 20 0.38
41 1 0.02
42 4 0.08
43 12 0.23
ACGTcount: A:0.47, C:0.10, G:0.22, T:0.21
Consensus pattern (40 bp):
AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
Found at i:476012 original size:20 final size:20
Alignment explanation
Indices: 475948--476012 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
475938 AGGAAGAAGA
*
475948 AGTTCATAATGAGAAGAACT
1 AGTTCATAATGAGAAGAATT
* * *
475968 CG-TCAT-CTGAAGAAGAATA
1 AGTTCATAATG-AGAAGAATT
*
475987 AATTCATAATGAGAAGAATT
1 AGTTCATAATGAGAAGAATT
*
476007 TGTTCA
1 AGTTCA
476013 ACTTTTTGTT
Statistics
Matches: 32, Mismatches: 10, Indels: 6
0.67 0.21 0.12
Matches are distributed among these distances:
18 2 0.06
19 11 0.34
20 17 0.53
21 2 0.06
ACGTcount: A:0.43, C:0.11, G:0.18, T:0.28
Consensus pattern (20 bp):
AGTTCATAATGAGAAGAATT
Found at i:476114 original size:24 final size:23
Alignment explanation
Indices: 476071--476115 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
476061 GTTCGTAATG
*
476071 AGAAGAATTCATCTGAAGAAGGA
1 AGAAGAATTCATATGAAGAAGGA
476094 AGAAGAAATTCATAATG-AGAAG
1 AGAAG-AATTCAT-ATGAAGAAG
476116 AATTTGTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 12 0.63
25 2 0.11
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.18
Consensus pattern (23 bp):
AGAAGAATTCATATGAAGAAGGA
Found at i:476143 original size:113 final size:112
Alignment explanation
Indices: 475946--476657 Score: 887
Period size: 113 Copynumber: 6.4 Consensus size: 112
475936 GAAGGAAGAA
*
475946 GAAGTTCATAATGAGAAGAACTCGTCATCT---GAAGAAGAATAAATTCATAATGAGAAGAATTT
1 GAAGTTCATAATGAGAAGAA-T--TCATCTGAAGAAGAAGAAGAAATTCATAATGAGAAGAATTT
* *
476008 GTTCAA-CTTTTTGTTCAAAACCATCACTCGATGGATCAAAC-TTTCCAGAG
63 GTTCAATC-TTTTGTTCAAATCCATCACTTGATGGATC-AACTTTTCCAGAG
*
476058 GAAGTTCGTAATGAGAAGAATTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGT
1 GAAGTTCATAATGAGAAGAATTCATCTGAAGAA-GAAGAAGAAATTCATAATGAGAAGAATTTGT
* *
476123 TCAATCTTTTGTTCAAAACCATCACTCGATGGATCAAAC-TTTCCAGAG
65 TCAATCTTTTGTTCAAATCCATCACTTGATGGATC-AACTTTTCCAGAG
*
476171 GAAGTTCGTAATGAGAAGAATTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGT
1 GAAGTTCATAATGAGAAGAATTCATCTGAAGAA-GAAGAAGAAATTCATAATGAGAAGAATTTGT
* *
476236 TCAATCTTTTGCTT-AAATCCATCATTTGATGGATCAGCTTTTCCAGAG
65 TCAATCTTTTG-TTCAAATCCATCACTTGATGGATCAACTTTTCCAGAG
* *
476284 AAAGTTCGTAATGAGAAGAATTCATCTGAAGAAGGAAGAAGAAATTCATAATGAGAAGAATTTGT
1 GAAGTTCATAATGAGAAGAATTCATCTGAAGAA-GAAGAAGAAATTCATAATGAGAAGAATTTGT
* * * *
476349 TCAATCTTTTGCTCAAATCTATCATTTGATGGATCAGCTTTTCCAGAG
65 TCAATCTTTTGTTCAAATCCATCACTTGATGGATCAACTTTTCCAGAG
* * *
476397 AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCAT-A--AGAAGAATTTGTT
1 GAAGTTCATAATGAGAAGAATTCATCTGAAGAAGAAGAAGAAATTCATAATGAGAAGAATTTGTT
* * * * * * *
476459 CAACCTTTTGTTTTAAATTCATCATTTGATGGATTAACATTGCCAG-G
66 CAATCTTTTG-TTCAAATCCATCACTTGATGGATCAACTTTTCCAGAG
* *
476506 TAGAGTTCATAATGAGAAGAACTCGTCATCT---GAAGAAGAAGAAATTCATATTGAGAAGAATT
1 GA-AGTTCATAATGAGAAGAA-T--TCATCTGAAGAAGAAGAAGAAATTCATAATGAGAAGAATT
* * * * *
476568 TCTTCAACCTTTTGCTCAAATCCATCACTTGATGGAACAGCTTTTCCAGA-
62 TGTTCAATCTTTTGTTCAAATCCATCACTTGATGGATCAACTTTTCCAGAG
*
476618 GAAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAG
1 GAAGTTCATAATGAGAAGAATTCATCTGAAGAAGAAGAAG
476658 TTCACAATAA
Statistics
Matches: 543, Mismatches: 37, Indels: 41
0.87 0.06 0.07
Matches are distributed among these distances:
108 6 0.01
109 30 0.06
110 62 0.11
111 30 0.06
112 66 0.12
113 346 0.64
114 3 0.01
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (112 bp):
GAAGTTCATAATGAGAAGAATTCATCTGAAGAAGAAGAAGAAATTCATAATGAGAAGAATTTGTT
CAATCTTTTGTTCAAATCCATCACTTGATGGATCAACTTTTCCAGAG
Found at i:476227 original size:24 final size:23
Alignment explanation
Indices: 476184--476228 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
476174 GTTCGTAATG
*
476184 AGAAGAATTCATCTGAAGAAGGA
1 AGAAGAATTCATATGAAGAAGGA
476207 AGAAGAAATTCATAATG-AGAAG
1 AGAAG-AATTCAT-ATGAAGAAG
476229 AATTTGTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 12 0.63
25 2 0.11
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.18
Consensus pattern (23 bp):
AGAAGAATTCATATGAAGAAGGA
Found at i:476340 original size:24 final size:23
Alignment explanation
Indices: 476297--476341 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
476287 GTTCGTAATG
*
476297 AGAAGAATTCATCTGAAGAAGGA
1 AGAAGAATTCATATGAAGAAGGA
476320 AGAAGAAATTCATAATG-AGAAG
1 AGAAG-AATTCAT-ATGAAGAAG
476342 AATTTGTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 5 0.26
24 12 0.63
25 2 0.11
ACGTcount: A:0.51, C:0.07, G:0.24, T:0.18
Consensus pattern (23 bp):
AGAAGAATTCATATGAAGAAGGA
Found at i:476809 original size:84 final size:82
Alignment explanation
Indices: 476655--476838 Score: 210
Period size: 84 Copynumber: 2.2 Consensus size: 82
476645 GAAGAAGAAG
* * * * * * * *
476655 AAGTTCACAATAAGAAGAGCTTGTTCAACTTTTTGCATAATTCTATCACAGAAGGAGATAGATTA
1 AAGTTCATAATGAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAATAGATCA
*
476720 GCATCAACCTTTCCAG-AGA
66 ACATCAACC---CCAGCAGA
* *
476739 AAGTTCATAATGAGAAGAGCTTATTTAACCTTTTGAATGACTCTATCACAGAAGGAAATA-AGTC
1 AAGTTCATAATGAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAATAGA-TC
*
476803 AACATCATCCCCAGCAGA
65 AACATCAACCCCAGCAGA
476821 AAGTTCATAATGAGAAGA
1 AAGTTCATAATGAGAAGA
476839 ACTCATCTGA
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
81 4 0.05
82 21 0.24
83 1 0.01
84 60 0.70
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (82 bp):
AAGTTCATAATGAGAAGAGCTTATTCAACCTTTTGAATAACTCTATCACAGAAGGAAATAGATCA
ACATCAACCCCAGCAGA
Found at i:477010 original size:3 final size:3
Alignment explanation
Indices: 477004--477080 Score: 129
Period size: 3 Copynumber: 25.7 Consensus size: 3
476994 CTCTATTTAC
*
477004 TAT TAT TAT TATT TAT TAT TAT TAT TAT GAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
477050 TAT TAT TAT TAT TAT TAT TAT T-T TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
477081 CAAATGGGCC
Statistics
Matches: 70, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
2 2 0.03
3 65 0.93
4 3 0.04
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:477535 original size:21 final size:21
Alignment explanation
Indices: 477493--477535 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
477483 ACAGAGAGAC
* *
477493 AAAACTGAGAGCAAAGATACA
1 AAAACGGAGAGCAAAGACACA
477514 AAAACGGAGAGCAACA-ACACA
1 AAAACGGAGAGCAA-AGACACA
477535 A
1 A
477536 TAACCAGCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.58, C:0.19, G:0.19, T:0.05
Consensus pattern (21 bp):
AAAACGGAGAGCAAAGACACA
Found at i:478479 original size:26 final size:26
Alignment explanation
Indices: 478450--478505 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
478440 AAATATATAT
478450 AATAAATAATAATTT-ATATT-TTTTTC
1 AATAAAT--TAATTTAATATTATTTTTC
*
478476 AATAAATTATTTTAATATTATTTTTC
1 AATAAATTAATTTAATATTATTTTTC
478502 AATA
1 AATA
478506 TCGAAGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 5 0.19
25 5 0.19
26 17 0.63
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.54
Consensus pattern (26 bp):
AATAAATTAATTTAATATTATTTTTC
Found at i:483934 original size:3 final size:3
Alignment explanation
Indices: 483926--483966 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
483916 GTGTAAGTTA
483926 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
483967 AATTTAAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:484344 original size:43 final size:42
Alignment explanation
Indices: 484278--484524 Score: 133
Period size: 40 Copynumber: 5.7 Consensus size: 42
484268 ATAACTCGGT
* * *
484278 TCCTACGTGATGAGGACGACTGGTTATCTATGGTTGACACGGC
1 TCCTACGTGATGAAGAGGTCTGG-TATCTATGGTTGACACGGC
*** * **
484321 TCCTACGTGATGAAGAGGTCTGG--TCGGGGGATGACATTGC
1 TCCTACGTGATGAAGAGGTCTGGTATCTATGGTTGACACGGC
* * * * * *
484361 TCATACGTGATGAAGAGTTCTTGGCCATCTTTAGGAATGGAGATAGCACGGT
1 TCCTACGTGATGAAGAGGTC-TGG-TATCTAT-GG--T--TG--A-CACGGC
* * *
484413 TCCTACGTGATGAGGACGACTGGTTATCTATGGTTGACACGGC
1 TCCTACGTGATGAAGAGGTCTGG-TATCTATGGTTGACACGGC
* ** *
484456 TCCTACGTGATGAAGAGATCTGG--TCGGTGGATGACACGGC
1 TCCTACGTGATGAAGAGGTCTGGTATCTATGGTTGACACGGC
* *
484496 TCATACGTGATGAAGAGTTCTGGTCATCT
1 TCCTACGTGATGAAGAGGTCTGGT-ATCT
484525 TTAGGAATAA
Statistics
Matches: 150, Mismatches: 39, Indels: 30
0.68 0.18 0.14
Matches are distributed among these distances:
40 64 0.43
41 3 0.02
43 46 0.31
44 3 0.02
45 2 0.01
46 1 0.01
48 1 0.01
49 1 0.01
50 2 0.01
51 9 0.06
52 18 0.12
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.28
Consensus pattern (42 bp):
TCCTACGTGATGAAGAGGTCTGGTATCTATGGTTGACACGGC
Found at i:484388 original size:135 final size:135
Alignment explanation
Indices: 484193--484531 Score: 554
Period size: 135 Copynumber: 2.5 Consensus size: 135
484183 GGTTCCTATA
* * * *
484193 TGATGAGGAAATCTGGTCGAGGGATGACACTGCTCATACATGATGAAGAGTTCTTGGCCATCTTT
1 TGATGAAGAGATCTGGTCGGGGGATGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTTT
* *
484258 AGGAAGGGTGATAACTCGGTTCCTACGTGATGAGGACGACTGGTTATCTATGGTTGACACGGCTC
66 AGGAAGGGAGATAACACGGTTCCTACGTGATGAGGACGACTGGTTATCTATGGTTGACACGGCTC
484323 CTACG
131 CTACG
* *
484328 TGATGAAGAGGTCTGGTCGGGGGATGACATTGCTCATACGTGATGAAGAGTTCTTGGCCATCTTT
1 TGATGAAGAGATCTGGTCGGGGGATGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTTT
* *
484393 AGGAATGGAGATAGCACGGTTCCTACGTGATGAGGACGACTGGTTATCTATGGTTGACACGGCTC
66 AGGAAGGGAGATAACACGGTTCCTACGTGATGAGGACGACTGGTTATCTATGGTTGACACGGCTC
484458 CTACG
131 CTACG
* * *
484463 TGATGAAGAGATCTGGTCGGTGGATGACACGGCTCATACGTGATGAAGAGTTC-TGGTCATCTTT
1 TGATGAAGAGATCTGGTCGGGGGATGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTTT
484527 AGGAA
66 AGGAA
484532 TAATGGTTTC
Statistics
Matches: 189, Mismatches: 15, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
134 15 0.08
135 174 0.92
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.27
Consensus pattern (135 bp):
TGATGAAGAGATCTGGTCGGGGGATGACACTGCTCATACGTGATGAAGAGTTCTTGGCCATCTTT
AGGAAGGGAGATAACACGGTTCCTACGTGATGAGGACGACTGGTTATCTATGGTTGACACGGCTC
CTACG
Found at i:484697 original size:31 final size:30
Alignment explanation
Indices: 484632--484698 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 30
484622 GACAAAATTC
* *
484632 ATTTCAATAGAAACGACTCAAAGATGGTTTT
1 ATTTCAAGAGAAACAACTCAAAGAT-GTTTT
484663 ATTTCAAGAGAAACAAACTCAAAGAT-TTTGT
1 ATTTCAAGAGAAAC-AACTCAAAGATGTTT-T
484694 ATTTC
1 ATTTC
484699 TAGAAAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 3 0.09
31 19 0.59
32 10 0.31
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (30 bp):
ATTTCAAGAGAAACAACTCAAAGATGTTTT
Found at i:484753 original size:67 final size:66
Alignment explanation
Indices: 484659--484887 Score: 211
Period size: 66 Copynumber: 3.4 Consensus size: 66
484649 TCAAAGATGG
* * *
484659 TTTTATTTCAAGAGAAACAAACTCAAAGATTTTGTA-TTTCTAGAA-AATTTGTCTCAAGAGAGA
1 TTTTGTTTCAA-AGAAACAAACTCAAAGATTTTGTAGTTTC-AAAAGAAGTTGTCTC--GAGAGA
484722 CAAAA
62 CAAAA
* * * **
484727 -TTTGTTTTAATAGAAACGATCTCAAAGA-TGGGTAGTTTCAAAAGAAGTTGTCTCGAGAGACAA
1 TTTTGTTTCAA-AGAAACAAACTCAAAGATTTTGTAGTTTCAAAAGAAGTTGTCTCGAGAGACAA
484790 AA
65 AA
* ** *
484792 TTTTGTTTCAAAGGAAACAAACTCAAAGATTTT-T--TTCTCAAAAGAAATTGTCTTTAAGAGAT
1 TTTTGTTTCAAA-GAAACAAACTCAAAGATTTTGTAGTT-TCAAAAGAAGTTGTC-TCGAGAGAC
484854 AAAA
63 AAAA
*
484858 TTTTGTTTCAAAAGAAACAGACTCAAAGAT
1 TTTTGTTTC-AAAGAAACAAACTCAAAGAT
484888 GGATTACATC
Statistics
Matches: 134, Mismatches: 19, Indels: 18
0.78 0.11 0.11
Matches are distributed among these distances:
64 2 0.01
65 26 0.19
66 66 0.49
67 40 0.30
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.32
Consensus pattern (66 bp):
TTTTGTTTCAAAGAAACAAACTCAAAGATTTTGTAGTTTCAAAAGAAGTTGTCTCGAGAGACAAA
A
Found at i:484929 original size:120 final size:121
Alignment explanation
Indices: 484783--485005 Score: 278
Period size: 120 Copynumber: 1.9 Consensus size: 121
484773 GTTGTCTCGA
* *
484783 GAGACAAAATTTTGTTTCAAAGGAAACAAACTC-AAAGATT-TTTTTCTCAAAAGAAATTGTCTT
1 GAGACAAAATTTTGTTTCAAAGGAAACAAACTCAAAAG-TTAGTTTT-TCAAAAGAAATTGTCTC
* *
484846 TA-AGAGATAAAATTT-TGTTTCAAAAGAAACAGA-CTCAAAGATGGATTACATCTTAAGT
64 AAGAGAGACAAAATTTGT-TTTC-AAAGAAACA-ATCTCAAAGATGGATTACATCTTAAGT
* * * **
484904 GAGACCAAA-TTTGTTTCAAATGAAACAATCTCAAAAGTTAGTTTTTCATTAGAAATTGTCTCAA
1 GAGACAAAATTTTGTTTCAAAGGAAACAAACTCAAAAGTTAGTTTTTCAAAAGAAATTGTCTCAA
484968 GAGAGACAAAATTTGTTTTCAAAGAAACAATCTCAAAG
66 GAGAGACAAAATTTGTTTTCAAAGAAACAATCTCAAAG
485006 GTTGATTTTT
Statistics
Matches: 88, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
119 1 0.01
120 54 0.61
121 32 0.36
122 1 0.01
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.31
Consensus pattern (121 bp):
GAGACAAAATTTTGTTTCAAAGGAAACAAACTCAAAAGTTAGTTTTTCAAAAGAAATTGTCTCAA
GAGAGACAAAATTTGTTTTCAAAGAAACAATCTCAAAGATGGATTACATCTTAAGT
Found at i:485081 original size:66 final size:65
Alignment explanation
Indices: 484904--485060 Score: 237
Period size: 66 Copynumber: 2.4 Consensus size: 65
484894 CATCTTAAGT
* *
484904 GAGACCAAATTTG-TTTCAAATGAAACAATCTCAAAAGTT-AGTTTTTCATTAGAAATTGTCTCA
1 GAGACAAAATTTGTTTTCAAA-GAAACAATCTC-AAAGTTGA-TTTTTCATTAGAAAATGTCTCA
484967 AGA
63 AGA
484970 GAGACAAAATTTGTTTTCAAAGAAACAATCTCAAAGGTTGATTTTTCATTAGAAAATGTCTCAAG
1 GAGACAAAATTTGTTTTCAAAGAAACAATCTCAAA-GTTGATTTTTCATTAGAAAATGTCTCAAG
485035 A
65 A
*
485036 GAGACAAAATTTGTTTTTAAAGAAA
1 GAGACAAAATTTGTTTTCAAAGAAA
485061 TAGACTCGAA
Statistics
Matches: 85, Mismatches: 3, Indels: 6
0.90 0.03 0.06
Matches are distributed among these distances:
65 3 0.04
66 74 0.87
67 8 0.09
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.32
Consensus pattern (65 bp):
GAGACAAAATTTGTTTTCAAAGAAACAATCTCAAAGTTGATTTTTCATTAGAAAATGTCTCAAGA
Found at i:485109 original size:29 final size:30
Alignment explanation
Indices: 485054--485137 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 30
485044 ATTTGTTTTT
* *
485054 AAAGAAATAGACTCGAATATGATTTTTTTTTTCA
1 AAAGAAACAGACTC-AA-A-GA-TTTTTTATTCA
485088 AAAGAAACA-ACTCAAAGA-TTTTTATTCA
1 AAAGAAACAGACTCAAAGATTTTTTATTCA
*
485116 AAAGGAACAGACTCAAAGATTT
1 AAAGAAACAGACTCAAAGATTT
485138 GTTTCAAGAG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
28 17 0.38
29 9 0.20
30 4 0.09
31 1 0.02
32 2 0.04
33 4 0.09
34 8 0.18
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.31
Consensus pattern (30 bp):
AAAGAAACAGACTCAAAGATTTTTTATTCA
Found at i:485116 original size:28 final size:28
Alignment explanation
Indices: 485079--485151 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
485069 AATATGATTT
485079 TTTTTTTCAAAAGAAACA-ACTCAAAGA
1 TTTTTTTCAAAAGAAACAGACTCAAAGA
*
485106 TTTTTATTCAAAAGGAACAGACTCAAAGA
1 TTTTT-TTCAAAAGAAACAGACTCAAAGA
* *
485135 TTTGTTTCAAGAGAAAC
1 TTTTTTTCAAAAGAAAC
485152 TGTCTCAAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
27 5 0.12
28 22 0.55
29 13 0.32
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (28 bp):
TTTTTTTCAAAAGAAACAGACTCAAAGA
Found at i:485533 original size:105 final size:105
Alignment explanation
Indices: 485317--485618 Score: 428
Period size: 105 Copynumber: 2.9 Consensus size: 105
485307 CAGCTTTGAA
* * * ** * *
485317 AATCTCAAGTGATATTAATTTTGTTTTAAGTAAAACAACTTTGAAATTTGTAT-T-ATGAGGGAA
1 AATCTCAAGTGAGATTAATTTTGTTTTAAGTGAAACAAATTCAAAATTTGTATCTCA-AAGGAAA
* * *
485380 AATGTCTCAAGTGAGACGAAATTTGTTTCGAAATAAACAAC
65 AATGTCTCAAGCGAGACGAAATTTGTTTTGAAAGAAACAAC
* * *
485421 AATCTCAAGTAAGATTAATTTTGTTTCAAGTGAAGCAAATTCAAAATTTGTATCTCAAAGGAAAA
1 AATCTCAAGTGAGATTAATTTTGTTTTAAGTGAAACAAATTCAAAATTTGTATCTCAAAGGAAAA
* *
485486 ATGTCTCAAGCGAGACGAAATTTATTTTGAAAGAAACAAT
66 ATGTCTCAAGCGAGACGAAATTTGTTTTGAAAGAAACAAC
*
485526 AATCTCAAGTGAGATTAATTTTGTTTTAAGTGAAACAAATTCAAAATTTGTATCACAAAGGAAAA
1 AATCTCAAGTGAGATTAATTTTGTTTTAAGTGAAACAAATTCAAAATTTGTATCTCAAAGGAAAA
*
485591 ATGTCTCAAGCGAGACGAAGTTTGTTTT
66 ATGTCTCAAGCGAGACGAAATTTGTTTT
485619 AAGATAAATT
Statistics
Matches: 175, Mismatches: 21, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
104 45 0.26
105 129 0.74
106 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.33
Consensus pattern (105 bp):
AATCTCAAGTGAGATTAATTTTGTTTTAAGTGAAACAAATTCAAAATTTGTATCTCAAAGGAAAA
ATGTCTCAAGCGAGACGAAATTTGTTTTGAAAGAAACAAC
Found at i:485632 original size:36 final size:35
Alignment explanation
Indices: 485592--485837 Score: 286
Period size: 34 Copynumber: 7.0 Consensus size: 35
485582 AAAGGAAAAA
* *
485592 TGTCTCAAGCGAGACGAAGTTTGTTTTAAGATAAAT
1 TGTCTCAAGCGAGACAAAGTTTGTTTT-AGAGAAAT
* * *
485628 TGTCTTAAGTGAGACAAAATTTGTTTTTCA-AGAAA-
1 TGTCTCAAGCGAGACAAAGTTTG-TTTT-AGAGAAAT
* * *
485663 TGTCTCAAGCGAGACAAAATTTTGTTTCA-AGAAAAC
1 TGTCTCAAGCGAGAC-AAAGTTTGTTTTAGAG-AAAT
*
485699 TGTCTCAAGCGAGACAAAATTTGTTTT-GAGAAAT
1 TGTCTCAAGCGAGACAAAGTTTGTTTTAGAGAAAT
*
485733 TGTCTCAAGCGAGATAAAGTTTGTTTT-GAGAAAT
1 TGTCTCAAGCGAGACAAAGTTTGTTTTAGAGAAAT
*
485767 TGTCTCAAGCGAGACAAAGTTTGTTTTTGAGAAAT
1 TGTCTCAAGCGAGACAAAGTTTGTTTTAGAGAAAT
*
485802 TGTCTCAAGCGAGACAAAGTTTTGTTTCGAGAGAAA
1 TGTCTCAAGCGAGACAAAG-TTTGTTT-TAGAGAAA
485838 CAACATCAAA
Statistics
Matches: 184, Mismatches: 18, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
34 64 0.35
35 57 0.31
36 52 0.28
37 11 0.06
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.33
Consensus pattern (35 bp):
TGTCTCAAGCGAGACAAAGTTTGTTTTAGAGAAAT
Found at i:485696 original size:34 final size:35
Alignment explanation
Indices: 485592--485828 Score: 272
Period size: 35 Copynumber: 6.8 Consensus size: 35
485582 AAAGGAAAAA
*
485592 TGTCTCAAGCGAGAC-GAAGTTTGTTTTAAGATAAAT
1 TGTCTCAAGCGAGACAAAAGTTTGTTTTAAG--AAAT
* *
485628 TGTCTTAAGTGAGACAAAA-TTTGTTTTTCAAGAAA-
1 TGTCTCAAGCGAGACAAAAGTTTG-TTTT-AAGAAAT
* * *
485663 TGTCTCAAGCGAGACAAAATTTTGTTTCAAGAAAAC
1 TGTCTCAAGCGAGACAAAAGTTTGTTTTAAG-AAAT
*
485699 TGTCTCAAGCGAGACAAAA-TTTGTTTTGAGAAAT
1 TGTCTCAAGCGAGACAAAAGTTTGTTTTAAGAAAT
* *
485733 TGTCTCAAGCGAGA-TAAAGTTTGTTTTGAGAAAT
1 TGTCTCAAGCGAGACAAAAGTTTGTTTTAAGAAAT
*
485767 TGTCTCAAGCGAGAC-AAAGTTTGTTTTTGAGAAAT
1 TGTCTCAAGCGAGACAAAAGTTTG-TTTTAAGAAAT
485802 TGTCTCAAGCGAGAC-AAAGTTTTGTTT
1 TGTCTCAAGCGAGACAAAAG-TTTGTTT
485829 CGAGAGAAAC
Statistics
Matches: 181, Mismatches: 10, Indels: 21
0.85 0.05 0.10
Matches are distributed among these distances:
33 3 0.02
34 57 0.31
35 65 0.36
36 47 0.26
37 6 0.03
38 3 0.02
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.34
Consensus pattern (35 bp):
TGTCTCAAGCGAGACAAAAGTTTGTTTTAAGAAAT
Found at i:486156 original size:4 final size:4
Alignment explanation
Indices: 486139--486213 Score: 102
Period size: 4 Copynumber: 19.2 Consensus size: 4
486129 TTTCATGTGT
* *
486139 TATG TATA TATG TATG TATA TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
486187 --TG TATG TATG TATG TAT- TGATG TATG T
1 TATG TATG TATG TATG TATG T-ATG TATG T
486214 TTTTCTTAGT
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
2 2 0.03
3 1 0.02
4 59 0.94
5 1 0.02
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:487429 original size:16 final size:16
Alignment explanation
Indices: 487408--487484 Score: 68
Period size: 16 Copynumber: 4.8 Consensus size: 16
487398 CCTTGTTTTC
487408 TTTTTTCTCTTTGCTT
1 TTTTTTCTCTTTGCTT
* *
487424 TTTTTTTTTTTTGCTT
1 TTTTTTCTCTTTGCTT
487440 TTTTTTGCT-TTT-CTT
1 TTTTTT-CTCTTTGCTT
* *
487455 TGATTTTCTCTTTGTTT
1 T-TTTTTCTCTTTGCTT
*
487472 TTCTTTTTTCTTT
1 TT-TTTTCTCTTT
487485 TCTCTTCGCT
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
15 6 0.12
16 30 0.61
17 13 0.27
ACGTcount: A:0.01, C:0.13, G:0.06, T:0.79
Consensus pattern (16 bp):
TTTTTTCTCTTTGCTT
Found at i:487462 original size:10 final size:10
Alignment explanation
Indices: 487403--487477 Score: 54
Period size: 10 Copynumber: 7.8 Consensus size: 10
487393 ATGCTCCTTG
487403 TTTTCTTT--
1 TTTTCTTTGC
487411 TTTCTCTTTGC
1 TTT-TCTTTGC
487422 TTTT-TTT--
1 TTTTCTTTGC
487429 TTTT-TTTGC
1 TTTTCTTTGC
*
487438 TTTTTTTTGC
1 TTTTCTTTGC
*
487448 TTTTCTTTGAT
1 TTTTCTTTG-C
*
487459 TTTCTCTTTGT
1 TTT-TCTTTGC
487470 TTTTCTTT
1 TTTTCTTT
487478 TTTCTTTTCT
Statistics
Matches: 57, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
7 7 0.12
8 3 0.05
9 12 0.21
10 19 0.33
11 10 0.18
12 6 0.11
ACGTcount: A:0.01, C:0.13, G:0.07, T:0.79
Consensus pattern (10 bp):
TTTTCTTTGC
Found at i:487496 original size:12 final size:12
Alignment explanation
Indices: 487433--487496 Score: 55
Period size: 12 Copynumber: 5.7 Consensus size: 12
487423 TTTTTTTTTT
487433 TTTGCTTTT-T-
1 TTTGCTTTTCTC
487443 TTTGC-TTT-TC
1 TTTGCTTTTCTC
*
487453 TTTGATTTTCTC
1 TTTGCTTTTCTC
* *
487465 TTTGTTTTTCTT
1 TTTGCTTTTCTC
*
487477 TTTTCTTTTCTC
1 TTTGCTTTTCTC
*
487489 TTCGCTTT
1 TTTGCTTT
487497 GATTTGACAT
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
9 4 0.09
10 9 0.21
11 3 0.07
12 27 0.63
ACGTcount: A:0.02, C:0.17, G:0.08, T:0.73
Consensus pattern (12 bp):
TTTGCTTTTCTC
Done.