genome.fa.s7996.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007996.1 Hibiscus syriacus cultivar Beakdansim tig00110446_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  213188

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691--794	39	2.7	38	86	4	147	23	16	24	36	1.94
2107--2131	8	3.1	8	100	0	50	40	0	0	60	0.97
9749--9816	31	2.2	31	83	0	91	20	17	16	45	1.85
10330--10362	16	2.0	17	94	5	59	66	0	0	33	0.92
11161--11263	35	2.9	35	83	0	134	25	17	18	38	1.92
11733--11812	39	2.1	39	87	0	115	25	13	25	36	1.92
11783--11845	33	1.9	33	93	0	108	23	14	25	36	1.93
13661--13803	60	2.4	60	80	6	173	30	22	5	41	1.77
19893--19954	14	4.5	14	82	6	56	58	3	0	38	1.15
19821--19964	65	2.2	61	75	11	135	52	4	1	41	1.29
21414--21518	39	2.7	39	86	2	149	23	16	23	36	1.94
25909--25971	28	2.2	28	77	5	74	31	9	1	57	1.40
28296--28352	28	2.0	28	83	6	71	36	0	3	59	1.14
28776--28821	3	15.3	3	100	0	92	32	0	0	67	0.91
29704--29734	16	1.9	16	100	0	62	54	6	19	19	1.65
29811--29876	32	2.1	32	88	2	98	18	18	16	46	1.84
32676--32772	29	3.3	29	98	0	185	49	7	12	30	1.67
37015--37065	26	2.0	26	88	7	77	33	11	0	54	1.37
37839--37880	20	2.1	20	100	0	84	66	4	4	23	1.30
38266--38387	65	1.9	65	92	0	208	22	30	22	24	1.99
38266--38402	65	2.2	63	88	5	197	23	27	24	24	2.00
40019--40044	6	4.3	6	100	0	52	34	0	50	15	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40519--40583	27	2.4	28	80	10	82	61	3	10	24	1.43
45306--45384	40	2.0	40	97	0	149	24	44	11	20	1.84
51033--51144	35	3.2	35	87	0	143	35	0	22	41	1.60
52221--52252	6	5.3	6	92	0	55	31	15	0	53	1.43
53218--53244	4	6.8	4	100	0	54	74	0	0	25	0.83
53251--53277	13	2.1	13	100	0	54	22	25	14	37	1.93
62143--62189	18	2.7	18	93	3	78	27	29	8	34	1.87
62702--62744	2	21.0	2	90	4	68	48	4	0	46	1.22
62987--63082	31	3.2	29	73	15	72	50	3	1	45	1.24
62997--63078	31	2.6	32	80	5	96	50	3	1	45	1.27
69025--69074	27	2.0	26	84	11	68	58	2	2	38	1.21
90136--90274	70	2.0	71	91	4	228	44	4	10	40	1.59
94266--94307	21	2.0	21	100	0	84	23	23	9	42	1.83
94434--94491	30	1.9	30	83	13	75	48	3	12	36	1.57
96457--96515	24	2.4	25	80	8	66	32	5	10	52	1.57
102658--102730	24	3.0	24	88	4	67	10	15	24	49	1.76
102668--102723	14	4.3	14	82	17	75	8	14	25	51	1.70
102669--102743	24	3.1	23	90	3	96	12	12	21	54	1.69
103472--103546	10	7.7	10	69	21	61	9	12	21	57	1.62
103478--103542	16	4.1	16	95	0	121	7	12	23	56	1.61
103612--103644	16	2.1	16	100	0	66	6	12	24	57	1.57
105482--105555	30	2.5	30	95	0	130	25	20	14	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106649--106711	32	2.0	32	96	0	117	38	15	12	33	1.86
113501--113613	60	1.9	60	80	10	133	38	16	15	29	1.89
117110--117226	60	2.0	60	81	3	137	33	17	5	42	1.74
123578--123643	29	2.2	31	94	5	118	43	13	12	30	1.80
129164--129197	16	2.1	17	94	5	61	32	0	0	67	0.91
137963--138108	60	2.5	59	81	6	170	28	17	18	34	1.94
141014--141061	12	4.0	12	80	0	60	66	0	33	0	0.92
141014--141061	24	2.0	24	91	0	78	66	0	33	0	0.92
146243--146320	41	1.9	40	84	10	104	30	10	1	57	1.40
146426--146477	26	2.0	26	96	0	95	28	0	17	53	1.44
146483--146549	31	2.2	31	83	5	82	55	4	10	29	1.53
146571--146699	65	2.0	66	84	4	172	55	5	7	31	1.51
148481--150322	361	5.0	371	79	8	1790	25	22	23	28	1.99
166631--166666	3	12.0	3	100	0	72	33	0	0	66	0.92
172876--172952	37	2.1	38	95	4	140	38	10	20	29	1.86
184183--184268	31	2.8	31	94	0	145	48	8	15	27	1.73
189296--189323	14	2.0	14	100	0	56	50	7	0	42	1.30
189384--189908	259	2.0	262	96	1	966	23	15	20	41	1.89
190111--190141	15	2.1	15	93	0	53	54	0	0	45	0.99
190847--190979	30	4.4	30	94	0	221	32	24	18	24	1.97
190847--191006	30	5.3	30	89	0	176	33	24	18	23	1.96
202996--203114	37	3.3	37	65	19	90	42	18	12	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202848--203125	72	3.9	70	88	3	396	42	20	10	26	1.85
202848--203125	140	2.0	143	88	2	418	42	20	10	26	1.85
206907--208072	264	4.4	265	87	1	1605	34	11	14	39	1.83
206905--207995	529	2.1	526	90	1	1695	34	11	15	38	1.83
210494--210553	21	3.2	21	65	30	62	31	5	20	43	1.73
210459--210604	35	4.2	36	84	8	169	33	6	18	41	1.75

Tables:   1

The End!