genome.fa.s7997.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007997.1 Hibiscus syriacus cultivar Beakdansim tig00110447_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  207866

Tables:   1   

This is table  1  of  1  ( 99 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4882--4912	15	2.1	15	93	0	53	54	0	0	45	0.99
5004--5045	21	2.0	22	90	9	70	45	4	2	47	1.36
5610--5741	30	4.4	30	92	1	212	31	25	18	24	1.98
5610--5735	59	2.1	60	92	1	209	32	25	18	23	1.97
15225--15283	31	1.9	31	82	6	75	35	15	13	35	1.87
17557--17836	71	3.9	71	89	1	418	42	20	10	26	1.84
21636--22797	263	4.4	265	87	2	1596	34	11	14	38	1.83
25235--25294	21	3.2	21	65	30	62	31	5	20	43	1.73
25227--25346	35	3.3	36	87	6	172	32	5	19	43	1.72
25200--25343	72	2.1	69	84	7	184	33	6	18	41	1.76
29851--29911	21	3.2	21	63	29	55	32	4	19	42	1.73
29843--29961	35	3.3	36	90	5	179	32	5	18	43	1.72
45175--45236	27	2.3	27	100	0	124	22	27	22	27	1.99
49133--49182	2	24.5	2	88	11	75	48	4	0	48	1.20
50799--50938	54	2.6	54	85	4	158	18	32	27	21	1.97
54131--54189	2	29.5	2	100	0	118	49	0	0	50	1.00
60557--60683	51	2.5	51	85	3	168	34	17	18	29	1.94
61998--62072	31	2.4	31	88	0	105	28	12	10	49	1.73
62642--62698	30	1.9	30	85	0	78	57	1	0	40	1.09
69850--69925	24	3.2	24	83	10	77	52	0	3	43	1.19
69818--69889	28	2.6	27	80	10	83	54	0	4	41	1.20
69866--69938	24	3.0	25	82	8	87	50	1	4	43	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69853--69938	26	3.3	26	71	18	63	51	1	3	44	1.26
71477--71502	13	2.0	13	100	0	52	46	0	7	46	1.31
74129--74247	60	2.0	61	85	5	161	36	14	8	40	1.76
76655--76719	14	4.9	14	76	14	75	10	12	20	56	1.65
76652--76709	24	2.4	24	91	0	98	10	12	20	56	1.64
76925--77010	24	3.6	24	73	19	81	13	12	16	56	1.66
78634--78662	15	1.9	15	100	0	58	75	0	0	24	0.80
79237--79285	25	2.0	25	100	0	98	48	8	4	38	1.52
79841--79873	16	2.1	16	100	0	66	42	0	6	51	1.26
82283--82321	14	2.9	13	85	7	51	25	2	2	69	1.14
88613--88639	3	9.0	3	100	0	54	33	0	0	66	0.92
88778--88824	17	2.8	17	75	12	51	42	0	6	51	1.27
90476--90516	18	2.3	18	87	4	57	60	4	4	29	1.38
92376--92523	64	2.3	64	78	6	165	34	19	16	29	1.94
92993--93028	17	2.0	19	89	10	58	44	5	11	38	1.63
95292--95367	36	2.1	36	97	0	143	43	14	10	31	1.79
100291--100366	36	2.1	36	97	0	143	43	14	10	31	1.79
101107--101150	20	2.2	20	83	0	52	65	2	4	27	1.23
105627--105709	38	2.2	38	95	0	157	36	10	16	36	1.84
115421--115550	60	2.2	60	81	4	145	39	3	23	33	1.73
115456--115570	60	1.9	60	82	7	144	44	2	20	33	1.65
115772--115825	21	2.6	21	78	0	63	24	18	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117113--117406	50	5.8	51	82	5	339	48	14	12	24	1.79
117537--117568	12	2.8	12	95	4	57	59	6	0	34	1.23
118994--119054	31	2.0	31	86	0	86	31	3	19	45	1.66
119005--119066	31	2.0	31	90	0	97	32	4	22	40	1.75
126212--126238	2	13.5	2	100	0	54	51	0	48	0	1.00
132260--132295	14	2.6	14	100	0	72	13	13	16	55	1.69
132559--132622	10	6.1	10	71	10	56	7	7	20	64	1.45
132581--132619	20	2.0	20	94	0	69	5	10	25	58	1.51
144222--144361	29	4.9	29	92	2	212	36	12	10	40	1.77
146615--146643	2	14.5	2	100	0	58	51	0	0	48	1.00
152100--152197	19	4.8	19	81	14	106	34	6	25	33	1.81
152097--152197	44	2.5	38	79	11	112	34	5	25	33	1.80
152169--152205	19	1.9	19	94	0	65	43	5	24	27	1.76
152606--152675	21	3.4	21	68	7	54	32	24	20	22	1.97
152603--152681	40	2.0	40	89	0	122	35	21	18	24	1.96
152712--152772	31	2.0	31	93	0	104	22	11	24	40	1.87
158346--158400	27	2.1	26	83	6	67	7	7	21	63	1.44
159802--159827	12	2.2	12	100	0	52	15	7	23	53	1.67
160447--160763	120	2.7	120	98	0	618	32	12	7	47	1.70
161024--161148	66	1.9	66	100	0	250	29	16	11	42	1.83
167069--167155	35	2.5	34	80	12	97	54	10	8	27	1.62
169350--169425	29	2.5	30	79	12	75	65	3	0	30	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171314--171363	18	2.9	17	80	11	57	28	24	6	42	1.78
173138--173165	2	14.0	2	100	0	56	50	0	0	50	1.00
174639--174671	7	4.7	7	96	0	57	45	36	0	18	1.49
175429--175789	182	2.0	179	92	2	598	32	17	16	32	1.93
179422--179477	29	1.9	29	88	0	85	42	1	17	37	1.60
186247--186352	3	35.3	3	96	0	194	65	0	1	33	1.04
187023--187069	21	2.2	21	88	0	76	19	27	14	38	1.91
187065--187199	20	6.7	20	83	5	148	36	20	20	22	1.95
187678--187766	20	4.4	21	81	8	105	33	25	22	17	1.96
187678--187766	40	2.2	40	86	4	117	33	25	22	17	1.96
187759--187833	33	2.2	33	90	2	114	45	20	21	13	1.84
189420--189503	42	2.0	43	83	2	107	21	19	38	21	1.94
189484--189526	21	2.1	21	91	8	72	23	18	34	23	1.96
189420--189532	43	2.7	42	77	8	122	23	18	37	21	1.94
190016--190118	20	5.2	20	92	0	143	40	21	17	20	1.91
190071--190138	20	3.4	20	89	0	91	36	22	16	25	1.94
190157--190318	87	1.9	87	86	0	234	19	18	18	43	1.88
190205--190286	33	2.5	33	75	2	83	15	18	19	46	1.84
190270--190309	20	2.0	20	95	0	71	17	20	22	40	1.92
190272--190319	20	2.4	20	85	0	69	20	16	20	41	1.90
192174--192262	20	4.5	20	84	1	108	46	23	15	14	1.83
192599--192664	22	3.0	22	88	0	105	21	13	37	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192861--192974	20	5.7	20	83	2	156	21	20	19	38	1.93
192843--192974	40	3.3	41	82	3	160	21	20	20	37	1.95
192863--192977	61	1.9	61	87	3	169	21	20	19	39	1.93
192971--193016	21	2.2	21	92	0	74	39	17	26	17	1.91
194291--194410	35	3.3	36	89	5	181	43	20	5	31	1.73
194342--194402	21	3.2	21	65	29	64	42	21	4	31	1.74
194293--194437	35	4.1	36	83	11	142	41	18	6	33	1.76
198887--199005	37	3.3	37	81	8	147	44	18	4	32	1.69
198937--198997	21	3.2	21	65	29	64	42	21	3	32	1.69
198889--198998	35	3.1	35	89	3	150	44	19	3	32	1.68
199965--200018	26	2.1	26	96	0	99	24	1	29	44	1.64

Tables:   1

The End!