Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007998.1 Hibiscus syriacus cultivar Beakdansim tig00110449_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89262

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6350--6398
21
2.5
19
83
6
53
24
4
0
71
1.03
9103--9166
31
2.1
31
87
0
92
25
7
15
51
1.70
20097--20152
12
4.7
11
74
22
51
0
21
1
76
0.87
20101--20153
18
2.9
18
84
15
65
0
20
3
75
0.96
20413--20462
23
2.2
22
86
10
66
66
0
8
26
1.19
20876--20926
19
2.6
20
90
3
77
43
5
15
35
1.71
25019--25062
19
2.4
17
82
14
52
22
9
0
68
1.18
29985--30014
13
2.4
13
94
5
53
26
30
0
43
1.55
47371--47412
11
3.8
11
81
6
50
69
4
11
14
1.34
51782--51823
11
3.8
11
81
6
50
69
4
11
14
1.34
57581--57625
8
5.5
8
87
12
65
0
20
2
77
0.87
57572--57627
16
3.5
16
86
13
71
0
19
3
76
0.93
60333--60372
21
1.9
21
85
10
55
62
0
17
20
1.33
60395--60435
22
1.9
21
90
5
64
26
2
36
34
1.70
63576--63629
22
2.5
22
96
0
99
38
1
37
22
1.65
68328--68421
47
2.0
47
95
0
170
46
18
18
17
1.84
70315--70375
2
31.0
2
90
9
99
47
1
0
50
1.10
71981--72040
17
3.5
17
73
10
52
78
3
13
5
1.04
71981--72041
13
4.8
12
74
9
50
78
3
13
4
1.03
76430--76459
13
2.4
13
94
5
53
26
30
0
43
1.55
83628--83689
17
3.6
17
72
12
54
77
4
11
6
1.11
83631--83703
34
2.1
34
89
2
110
78
4
12
5
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83648--83708
18
3.4
18
74
19
65
77
3
13
6
1.09
85006--85063
28
2.1
28
96
3
109
37
25
15
20
1.92
87900--87946
16
3.1
15
77
22
53
17
17
0
65
1.27
88172--88237
14
4.6
14
73
16
55
77
6
7
9
1.13
88177--88243
29
2.4
28
85
7
82
79
4
8
7
1.06

Tables:   1

The End!