Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007999.1 Hibiscus syriacus cultivar Beakdansim tig00110450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11700749
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 10 of 50
Found at i:2384818 original size:90 final size:88
Alignment explanation
Indices: 2384661--2384834 Score: 303
Period size: 90 Copynumber: 2.0 Consensus size: 88
2384651 CCTAACATAC
*
2384661 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGATTTTATTATTTCAAATTAATTAAATCTATA
*
2384726 TTTAATTAATTAGAATTTAATAAT
66 TTTAATTAATT-GAAATTAATAAT
*
2384750 CCTTTTATATCCAAGTTACCCTAATCATATTAGGAATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGG-ATTTTATTATTTCAAATTAATTAAATCTAT
2384815 ATTTAATTAATTGAAATTAA
65 ATTTAATTAATTGAAATTAA
2384835 ATATCCAGGA
Statistics
Matches: 81, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
89 40 0.49
90 41 0.51
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (88 bp):
CCTTTTATAGCCAAGTTACCCTAATCATATTAGGATTTTATTATTTCAAATTAATTAAATCTATA
TTTAATTAATTGAAATTAATAAT
Found at i:2386313 original size:37 final size:37
Alignment explanation
Indices: 2386223--2386313 Score: 87
Period size: 37 Copynumber: 2.5 Consensus size: 37
2386213 TCGGGCCGGG
* *
2386223 TATATATATTTA-AATTCAATATATAAATATTATATA
1 TATATATATATATAATTAAATATATAAATATTATATA
* * * * * *
2386259 TATTTTTA-ATTTAAATTAAATTTATTAGTATTATATA
1 TATATATATATAT-AATTAAATATATAAATATTATATA
2386296 TATATATATATATAATTA
1 TATATATATATATAATTA
2386314 TTTTTAATAT
Statistics
Matches: 41, Mismatches: 11, Indels: 5
0.72 0.19 0.09
Matches are distributed among these distances:
35 1 0.02
36 6 0.15
37 31 0.76
38 3 0.07
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (37 bp):
TATATATATATATAATTAAATATATAAATATTATATA
Found at i:2392096 original size:89 final size:89
Alignment explanation
Indices: 2391926--2392099 Score: 314
Period size: 89 Copynumber: 2.0 Consensus size: 89
2391916 CCTAACACAC
2391926 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
2391991 TTTAATTAATTGGAATTTAATAAT
66 TTTAATTAATTGGAATTTAATAAT
*
2392015 CCTTTTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGG-TTTTATTATTTCAAATTAATTAAATCTAT
*
2392080 ATTTACTTAATT-GAATTTAA
65 ATTTAATTAATTGGAATTTAA
2392100 ATATTCGGGA
Statistics
Matches: 82, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
89 42 0.51
90 40 0.49
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (89 bp):
CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
TTTAATTAATTGGAATTTAATAAT
Found at i:2395425 original size:65 final size:65
Alignment explanation
Indices: 2395355--2395509 Score: 231
Period size: 65 Copynumber: 2.4 Consensus size: 65
2395345 ATAAGACTTA
** *
2395355 GTGCATCGGTACAGTAATTACATTCGATGTTTAAAAATATTCAAGAGTGCATCGATGCATGG-TC
1 GTGCATCGGTACACAAAATACATTCGATGTTTAAAAATATTCAAGAGTGCATCGATGCATGGCT-
2395419 T
65 T
* * *
2395420 GTGCATCGGTATACAAAATGCATTCGATGTTTCAAAATATTCAAGAGTGCATCGATGCATGGCTT
1 GTGCATCGGTACACAAAATACATTCGATGTTTAAAAATATTCAAGAGTGCATCGATGCATGGCTT
*
2395485 GTGCATCGGTACACAAAATGCATTC
1 GTGCATCGGTACACAAAATACATTC
2395510 AAAATGGGTG
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
65 81 0.99
66 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (65 bp):
GTGCATCGGTACACAAAATACATTCGATGTTTAAAAATATTCAAGAGTGCATCGATGCATGGCTT
Found at i:2396405 original size:90 final size:89
Alignment explanation
Indices: 2396247--2396423 Score: 318
Period size: 90 Copynumber: 2.0 Consensus size: 89
2396237 CGTAACACAC
2396247 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
* *
2396312 TTTAATTAATTGGAATTTAATAAT
66 TTTAATTAATTGAAATTAAATAAT
*
2396336 CCTTTTATATCCAAGTTACCCTAATCATATTAGGGATTTTATTATTTCAAATTAATTAAATCTAT
1 CCTTTTATAGCCAAGTTACCCTAATCATATTAGGG-TTTTATTATTTCAAATTAATTAAATCTAT
2396401 ATTTAATTAATTGAAATTAAATA
65 ATTTAATTAATTGAAATTAAATA
2396424 TTCGAGATTA
Statistics
Matches: 84, Mismatches: 3, Indels: 1
0.95 0.03 0.01
Matches are distributed among these distances:
89 34 0.40
90 50 0.60
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.45
Consensus pattern (89 bp):
CCTTTTATAGCCAAGTTACCCTAATCATATTAGGGTTTTATTATTTCAAATTAATTAAATCTATA
TTTAATTAATTGAAATTAAATAAT
Found at i:2400419 original size:14 final size:14
Alignment explanation
Indices: 2400397--2400430 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
2400387 ACCATTAAAA
*
2400397 AATAGTTAACTGTT
1 AATAATTAACTGTT
2400411 AATAATTAACTGTT
1 AATAATTAACTGTT
*
2400425 ATTAAT
1 AATAAT
2400431 AGTTCGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (14 bp):
AATAATTAACTGTT
Found at i:2400723 original size:16 final size:18
Alignment explanation
Indices: 2400703--2400766 Score: 62
Period size: 18 Copynumber: 3.7 Consensus size: 18
2400693 ATAAAATAAA
2400703 ATATATATAAA-GTTATT
1 ATATATATAAATGTTATT
* *
2400720 -TATATACAAATTTTATT
1 ATATATATAAATGTTATT
* *
2400737 ATATATATATAT-ATATAT
1 ATATATATAAATGTTAT-T
2400755 ATATATATAAAT
1 ATATATATAAAT
2400767 AATAAAAAAT
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
16 9 0.24
17 8 0.21
18 21 0.55
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (18 bp):
ATATATATAAATGTTATT
Found at i:2400741 original size:2 final size:2
Alignment explanation
Indices: 2400736--2400763 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2400726 CAAATTTTAT
2400736 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
2400764 AATAATAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2405690 original size:3 final size:3
Alignment explanation
Indices: 2405676--2405705 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
2405666 CAATGGAGAT
*
2405676 GAA GAG GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
2405706 AAGGAAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:2420319 original size:3 final size:3
Alignment explanation
Indices: 2420313--2420350 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
2420303 TTTTATTTTT
* *
2420313 TTA TTA TTA TTA TTA GTA TTA ATA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
2420351 TTGTAGGCCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:2422666 original size:37 final size:37
Alignment explanation
Indices: 2422614--2422684 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
2422604 CTTATTTCTA
2422614 TGTTTCCATTCTCAATTGTTTTTGTAATTTGCTTACT
1 TGTTTCCATTCTCAATTGTTTTTGTAATTTGCTTACT
* *
2422651 TGTTTCTATTTTCAATTGTTTTTGTAATTTGCTT
1 TGTTTCCATTCTCAATTGTTTTTGTAATTTGCTT
2422685 GTACATGCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.15, C:0.13, G:0.11, T:0.61
Consensus pattern (37 bp):
TGTTTCCATTCTCAATTGTTTTTGTAATTTGCTTACT
Found at i:2422950 original size:37 final size:37
Alignment explanation
Indices: 2422898--2422968 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
2422888 CTTATTTCTA
2422898 TGTTTCCATTCTCAATTGTTTTTGTAATTTGCTTACT
1 TGTTTCCATTCTCAATTGTTTTTGTAATTTGCTTACT
* *
2422935 TGTTTCTATTTTCAATTGTTTTTGTAATTTGCTT
1 TGTTTCCATTCTCAATTGTTTTTGTAATTTGCTT
2422969 GTACATGCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.15, C:0.13, G:0.11, T:0.61
Consensus pattern (37 bp):
TGTTTCCATTCTCAATTGTTTTTGTAATTTGCTTACT
Found at i:2435474 original size:11 final size:10
Alignment explanation
Indices: 2435444--2435585 Score: 52
Period size: 11 Copynumber: 12.8 Consensus size: 10
2435434 ATTTCGCTTG
2435444 AAGAAGAAATAA
1 AAGAA-AAA-AA
2435456 AAGAAAAAAA
1 AAGAAAAAAA
**
2435466 AACGAAAAATG
1 AA-GAAAAAAA
* *
2435477 AA-AAAATAT
1 AAGAAAAAAA
*
2435486 AATAATAAAAA
1 AAGAA-AAAAA
*
2435497 TGAGAAAAAGAAA
1 -AAG-AAAA-AAA
2435510 AAGAAGAAAAA
1 AAGAA-AAAAA
2435521 AAGAAAAGAAAAA
1 AAG--AA-AAAAA
2435534 AAGAAAAAAA
1 AAGAAAAAAA
*
2435544 TGAGAAAAAATA
1 -AAGAAAAAA-A
*
2435556 AAAATGAAAAAA
1 AAGA--AAAAAA
*
2435568 AAGAAAGAAA
1 AAGAAAAAAA
*
2435578 AATAAAAA
1 AAGAAAAA
2435586 GAGAAAAATG
Statistics
Matches: 100, Mismatches: 17, Indels: 28
0.69 0.12 0.19
Matches are distributed among these distances:
9 6 0.06
10 22 0.22
11 34 0.34
12 17 0.17
13 21 0.21
ACGTcount: A:0.79, C:0.01, G:0.13, T:0.08
Consensus pattern (10 bp):
AAGAAAAAAA
Found at i:2435481 original size:8 final size:8
Alignment explanation
Indices: 2435470--2435604 Score: 50
Period size: 8 Copynumber: 18.0 Consensus size: 8
2435460 AAAAAAAACG
2435470 AAAAATGA
1 AAAAATGA
2435478 AAAAAT-A
1 AAAAATGA
*
2435485 TAATAAT--
1 -AAAAATGA
2435492 AAAAATGA
1 AAAAATGA
2435500 GAAAAA-GA
1 -AAAAATGA
*
2435508 AAAAGAAGA
1 AAAA-ATGA
2435517 AAAAA--A
1 AAAAATGA
*
2435523 GAAAA-GA
1 AAAAATGA
*
2435530 AAAAAAGAA
1 AAAAATG-A
2435539 AAAAATGA
1 AAAAATGA
2435547 GAAAAA--A
1 -AAAAATGA
2435554 TAAAAATGA
1 -AAAAATGA
2435563 AAAAA--A
1 AAAAATGA
*
2435569 AGAAA-G-
1 AAAAATGA
2435575 AAAAAT--
1 AAAAATGA
2435581 AAAAA-GA
1 AAAAATGA
2435588 GAAAAATGA
1 -AAAAATGA
2435597 AAAAATGA
1 AAAAATGA
2435605 GAAATAAAAG
Statistics
Matches: 101, Mismatches: 8, Indels: 36
0.70 0.06 0.25
Matches are distributed among these distances:
6 24 0.24
7 16 0.16
8 35 0.35
9 26 0.26
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (8 bp):
AAAAATGA
Found at i:2435511 original size:16 final size:14
Alignment explanation
Indices: 2435492--2435613 Score: 86
Period size: 16 Copynumber: 8.1 Consensus size: 14
2435482 ATATAATAAT
*
2435492 AAAAATGAGAAAAA
1 AAAAAAGAGAAAAA
*
2435506 GAAAAAGAAGAAAAA
1 AAAAAAG-AGAAAAA
*
2435521 AAGAAAAGAAAAAAAGA
1 AA-AAAAG-AGAAAA-A
2435538 AAAAAATGAGAAAAA
1 AAAAAA-GAGAAAAA
*
2435553 ATAAAAA-TGAAAAA
1 A-AAAAAGAGAAAAA
*
2435567 AAAGAA-AGAAAAA
1 AAAAAAGAGAAAAA
*
2435580 TAAAAAGAGAAAAA
1 AAAAAAGAGAAAAA
2435594 TGAAAAAATGAGAAATAA
1 --AAAAAA-GAGAAA-AA
2435612 AA
1 AA
2435614 GGAGGGTTCA
Statistics
Matches: 87, Mismatches: 11, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
13 14 0.16
14 19 0.22
15 10 0.11
16 32 0.37
17 10 0.11
18 2 0.02
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.07
Consensus pattern (14 bp):
AAAAAAGAGAAAAA
Found at i:2435527 original size:47 final size:43
Alignment explanation
Indices: 2435461--2435601 Score: 126
Period size: 47 Copynumber: 3.1 Consensus size: 43
2435451 AATAAAAGAA
* *
2435461 AAAAAAACGAAAAATGAAAAAATATAATAATAAAAATGAGAAAAAG
1 AAAAAAA-GAAAAAAGAAAAAA-A-AAAAATAAAAATGAGAAAAAG
*
2435507 AAAAAGAAGAAAAAAAGAAAAGAAAAAAAGAAAAAAATGAGAAAAA-
1 AAAAA-AAG-AAAAAAGAAAA-AAAAAAA-ATAAAAATGAGAAAAAG
* * *
2435553 ATAAAAATGAAAAAA-AAGAAAGAAAAATAAAAA-GAGAAAAATG
1 A-AAAAAAGAAAAAAGAAAAAAAAAAAATAAAAATGAGAAAAA-G
2435596 AAAAAA
1 AAAAAA
2435602 TGAGAAATAA
Statistics
Matches: 81, Mismatches: 7, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
41 8 0.10
42 11 0.14
43 7 0.09
44 3 0.04
45 6 0.07
46 12 0.15
47 32 0.40
48 2 0.02
ACGTcount: A:0.79, C:0.01, G:0.13, T:0.08
Consensus pattern (43 bp):
AAAAAAAGAAAAAAGAAAAAAAAAAAATAAAAATGAGAAAAAG
Found at i:2435598 original size:25 final size:25
Alignment explanation
Indices: 2435492--2435598 Score: 107
Period size: 25 Copynumber: 4.4 Consensus size: 25
2435482 ATATAATAAT
*
2435492 AAAAATG--AGAAAAAGAAAAAGAA
1 AAAAATGAAAGAAAAATAAAAAGAA
* *
2435515 GAAAA--AAAGAAAAGAAAAAAAGAA
1 AAAAATGAAAGAAAA-ATAAAAAGAA
*
2435539 AAAAATGAGA-AAAAATAAAAATGAA
1 AAAAATGAAAGAAAAATAAAAA-GAA
* *
2435564 AAAAAAGAAAGAAAAATAAAAAGAG
1 AAAAATGAAAGAAAAATAAAAAGAA
2435589 AAAAATGAAA
1 AAAAATGAAA
2435599 AAATGAGAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 12
0.76 0.10 0.13
Matches are distributed among these distances:
23 10 0.15
24 19 0.28
25 26 0.38
26 13 0.19
ACGTcount: A:0.79, C:0.00, G:0.15, T:0.06
Consensus pattern (25 bp):
AAAAATGAAAGAAAAATAAAAAGAA
Found at i:2435613 original size:14 final size:14
Alignment explanation
Indices: 2435538--2435613 Score: 68
Period size: 14 Copynumber: 5.3 Consensus size: 14
2435528 GAAAAAAAGA
*
2435538 AAAAAATGAGAAAAA
1 AAAAAATGA-AAAAT
2435553 ATAAAAATGAAAAA-
1 A-AAAAATGAAAAAT
2435567 AAAGAAA-GAAAAAT
1 AAA-AAATGAAAAAT
2435581 AAAAAGA-GAAAAAT
1 AAAAA-ATGAAAAAT
*
2435595 GAAAAAATGAGAAAT
1 -AAAAAATGAAAAAT
2435610 AAAA
1 AAAA
2435614 GGAGGGTTCA
Statistics
Matches: 54, Mismatches: 1, Indels: 13
0.79 0.01 0.19
Matches are distributed among these distances:
13 10 0.19
14 20 0.37
15 16 0.30
16 8 0.15
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (14 bp):
AAAAAATGAAAAAT
Found at i:2437457 original size:55 final size:55
Alignment explanation
Indices: 2436920--2437453 Score: 618
Period size: 55 Copynumber: 9.9 Consensus size: 55
2436910 GAAGCAAATT
* *
2436920 CGTTTGTTGAAGA---TT-GAGTCCTATACTCTCTGAAGGAATAGGGAGCGGACA
1 CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACA
* * *
2436971 AGTTCGTTGAAGA---TT-GAGTCCTATACTCTCTGAAGGAATA-AGGAGCGGACA
1 CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGA-GAGCGGACA
* * *
2437022 AGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGAAATAGAGAGCGGACC
1 CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACA
** *
2437077 CGTTTCATGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATTGAGAGCGGACA
1 CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACA
2437132 CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACA
1 CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACA
* * *
2437187 CGTTTGTTGAAGGTTGCTCGAGTTCTATACTCTCTGAAGGAATAGGGAGCGGACA
1 CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACA
* * * * *
2437242 CGTTTGTTAAAGA---TT-GAGTCCTATACTCTCTGAAAGAATAGGGAGCAGACA
1 CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACA
* *
2437293 CGTTTGTTAAAGATT-TTCCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACC
1 CGTTTGTTGAAGATTGTT-CGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACA
* * ** *
2437348 CGTTTTATTGAAGATTGTTCAAG-TCTTATACTCTCTGAATAAATAGAGAGCAGACA
1 CG-TTTGTTGAAGATTGTTCGAGTTC-TATACTCTCTGAAGGAATAGAGAGCGGACA
* * *
2437404 CATTT-TATGAAGATTGTTAGAG-TCTTATACT-TCCTGAAGGAATAGGGAGC
1 CGTTTGT-TGAAGATTGTTCGAGTTC-TATACTCT-CTGAAGGAATAGAGAGC
2437454 AGACTCATCA
Statistics
Matches: 425, Mismatches: 43, Indels: 26
0.86 0.09 0.05
Matches are distributed among these distances:
51 105 0.25
52 1 0.00
53 2 0.00
54 4 0.01
55 269 0.63
56 42 0.10
57 2 0.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (55 bp):
CGTTTGTTGAAGATTGTTCGAGTTCTATACTCTCTGAAGGAATAGAGAGCGGACA
Found at i:2438013 original size:45 final size:45
Alignment explanation
Indices: 2437941--2438028 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
2437931 CAAAAAGGGG
2437941 TACTTATTTCTATGTTTCCATTCTCAATTGTTTTTGTAATTTGTT
1 TACTTATTTCTATGTTTCCATTCTCAATTGTTTTTGTAATTTGTT
* *
2437986 TACTTATTTCTATGTTTCTATTTTCAATTGTTTTTGTAATTTG
1 TACTTATTTCTATGTTTCCATTCTCAATTGTTTTTGTAATTTG
2438029 CTTGTACATG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.61
Consensus pattern (45 bp):
TACTTATTTCTATGTTTCCATTCTCAATTGTTTTTGTAATTTGTT
Found at i:2440643 original size:35 final size:35
Alignment explanation
Indices: 2440603--2440673 Score: 108
Period size: 35 Copynumber: 2.0 Consensus size: 35
2440593 TAAATATGGA
*
2440603 AAAAAGTAAATGGTAAGTGT-TGAATAAAAGTAAAT
1 AAAAAGTAAATGGTAAGT-TCTGAATAAAAGGAAAT
*
2440638 AAAAAGTAAATGGTAAGTTCTGAATGAAAGGAAAT
1 AAAAAGTAAATGGTAAGTTCTGAATAAAAGGAAAT
2440673 A
1 A
2440674 TATAAAACGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
34 1 0.03
35 32 0.97
ACGTcount: A:0.54, C:0.01, G:0.21, T:0.24
Consensus pattern (35 bp):
AAAAAGTAAATGGTAAGTTCTGAATAAAAGGAAAT
Found at i:2441826 original size:22 final size:21
Alignment explanation
Indices: 2441798--2441845 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
2441788 TGGTCCTAAA
*
2441798 ATAATAATA-TATAATTTATTAT
1 ATAATAATATTAT-ATATA-TAT
2441820 ATAATAATATTATATATATAT
1 ATAATAATATTATATATATAT
2441841 ATAAT
1 ATAAT
2441846 TCATAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 8 0.33
22 13 0.54
23 3 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATAATAATATTATATATATAT
Found at i:2441835 original size:15 final size:15
Alignment explanation
Indices: 2441804--2441846 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 15
2441794 TAAAATAATA
2441804 ATAT-ATAATTTATT
1 ATATAATAATTTATT
2441818 ATATAATAATATTATAT
1 ATATAATAAT-TTAT-T
2441835 ATATATATAATT
1 ATATA-ATAATT
2441847 CATAATTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 4 0.16
15 5 0.20
16 4 0.16
17 7 0.28
18 5 0.20
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATAATAATTTATT
Found at i:2442493 original size:68 final size:67
Alignment explanation
Indices: 2442369--2442548 Score: 195
Period size: 66 Copynumber: 2.7 Consensus size: 67
2442359 ACAGAATTCA
** * * *
2442369 TTTCAAGGGAAACGATCTCAAAGATATTTGTTGTTTTATGAGAAA-TGGTCTCAAGGGAAACAAA
1 TTTCAAGGGAAAAAATCTCAAAGAT-TTTG-GGTTTCAAGAGAAACTGGTCTCAAGGGAAACAAA
2442433 ATCTT
64 AT-TT
* *
2442438 GTTTTAAGGGAAATAAAT-TCAAAGATTTTGGGTTTCAAGAGAAACT-GTCTCAAGGGAGACAAA
1 -TTTCAAGGGAAA-AAATCTCAAAGATTTTGGGTTTCAAGAGAAACTGGTCTCAAGGGAAACAAA
2442501 ATTT
64 ATTT
* * * *
2442505 TTTCAAGGGAAACAATCTCAAAGGTTTTGTGTTTTAAGAGAAAC
1 TTTCAAGGGAAAAAATCTCAAAGATTTTGGGTTTCAAGAGAAAC
2442549 ATTTTCAAAG
Statistics
Matches: 95, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
65 3 0.03
66 35 0.37
67 2 0.02
68 29 0.31
69 5 0.05
70 19 0.20
71 2 0.02
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (67 bp):
TTTCAAGGGAAAAAATCTCAAAGATTTTGGGTTTCAAGAGAAACTGGTCTCAAGGGAAACAAAAT
TT
Found at i:2442600 original size:36 final size:34
Alignment explanation
Indices: 2442505--2442618 Score: 135
Period size: 34 Copynumber: 3.4 Consensus size: 34
2442495 GACAAAATTT
* *
2442505 TTTCAAGGGAAACAATCTCAAAGG---TTTTGTG
1 TTTCAAGAGAAACAATTTCAAAGGTTTTTTTGTG
* * *
2442536 TTTTAAGAGAAACATTTTCAAAGGTTTTTTTTTG
1 TTTCAAGAGAAACAATTTCAAAGGTTTTTTTGTG
*
2442570 TTTCAAGAGAAACAATTTGAAAGGTTTTTTTTTGTG
1 TTTCAAGAGAAACAATTTCAAAGG--TTTTTTTGTG
2442606 TTTCAAGAGAAAC
1 TTTCAAGAGAAAC
2442619 TGTCTCAAGG
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
31 20 0.29
34 27 0.39
36 22 0.32
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.40
Consensus pattern (34 bp):
TTTCAAGAGAAACAATTTCAAAGGTTTTTTTGTG
Found at i:2442750 original size:36 final size:36
Alignment explanation
Indices: 2442671--2442845 Score: 298
Period size: 36 Copynumber: 4.8 Consensus size: 36
2442661 CAAAGATTGG
*
2442671 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACTAAA-TT
*
2442708 TGTTTCAATG-GAAACTGTCTCAAGAGAGACTAACTT
1 TGTTTCAA-GAGAAACTGTCTCAAGAGAGACTAAATT
*
2442744 TGTTTCAAGGGAAACTGTCTCAAGAGAGACTAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACTAAATT
2442780 TGTTTCAAGAGAAACTGTCTCAAGAGAGACTAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACTAAATT
2442816 TGTTTCAAGAGAAACTGTCTCAAGAGAGAC
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGAC
2442846 AATGGTGAGC
Statistics
Matches: 132, Mismatches: 4, Indels: 5
0.94 0.03 0.04
Matches are distributed among these distances:
35 1 0.01
36 100 0.76
37 30 0.23
38 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (36 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACTAAATT
Found at i:2442751 original size:21 final size:21
Alignment explanation
Indices: 2442727--2442827 Score: 82
Period size: 21 Copynumber: 5.4 Consensus size: 21
2442717 GGAAACTGTC
2442727 TCAAGAGAGACTAACTTTGTT
1 TCAAGAGAGACTAACTTTGTT
*
2442748 TCAAG-G-GA--AAC--TGTC
1 TCAAGAGAGACTAACTTTGTT
*
2442763 TCAAGAGAGACTAAATTTGTT
1 TCAAGAGAGACTAACTTTGTT
*
2442784 TC-A-AGAGA--AAC--TGTC
1 TCAAGAGAGACTAACTTTGTT
*
2442799 TCAAGAGAGACTAAATTTGTT
1 TCAAGAGAGACTAACTTTGTT
2442820 TCAAGAGA
1 TCAAGAGA
2442828 AACTGTCTCA
Statistics
Matches: 61, Mismatches: 7, Indels: 24
0.66 0.08 0.26
Matches are distributed among these distances:
15 13 0.21
16 2 0.03
17 12 0.20
19 11 0.18
20 2 0.03
21 21 0.34
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (21 bp):
TCAAGAGAGACTAACTTTGTT
Found at i:2443232 original size:36 final size:36
Alignment explanation
Indices: 2443185--2443256 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
2443175 TGAAGTTGAA
2443185 TAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
1 TAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
2443221 TAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
1 TAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
2443257 AATGGTGAGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (36 bp):
TAAATTTGTTTCAAGAGAAACTGTCTCAAGAGAGAC
Found at i:2443755 original size:110 final size:110
Alignment explanation
Indices: 2443625--2443937 Score: 448
Period size: 110 Copynumber: 2.8 Consensus size: 110
2443615 TTTCAATTCT
* *
2443625 AATATCATTCACTGTGAAGTTGAAATTGGCTCTGAATGAAACTGGGAAGTTGTTTGTTGACAGCC
1 AATATCATTCGCTGTGAAGTTGAAATTGGCTCTGAATGAAACTGGGAAGTTGTTTGTTGACAGTC
* * * * *
2443690 AGCCGCCCTTTCGCTGTAAAGTTGAGCTTGTGTTGTCTCA-AGTCC
66 AGTCGCCCATTCGCTGTGAAGTTGAGCTTGTGGTGTAT-AGAGTCC
* * *
2443735 AATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAATGAAAATGGGAAGTTGTTTGTTGACAATC
1 AATATCATTCGCTGTGAAGTTGAAATTGGCTCTGAATGAAACTGGGAAGTTGTTTGTTGACAGTC
* * * * *
2443800 GGTCACCCCTTCACTGTGAAGTTGAGCTTGTGGTGTATAGAGTCT
66 AGTCGCCCATTCGCTGTGAAGTTGAGCTTGTGGTGTATAGAGTCC
* **
2443845 AATATCATTCGCTGTGAAGTTGAAATTGACTCTGAATGAAACTGAAAAGTTGTTTGTTGACAGTC
1 AATATCATTCGCTGTGAAGTTGAAATTGGCTCTGAATGAAACTGGGAAGTTGTTTGTTGACAGTC
2443910 AGTCGCCCATTCGCTGTGAAGTTGAGCT
66 AGTCGCCCATTCGCTGTGAAGTTGAGCT
2443938 ACCACCATCA
Statistics
Matches: 178, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
109 1 0.01
110 177 0.99
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (110 bp):
AATATCATTCGCTGTGAAGTTGAAATTGGCTCTGAATGAAACTGGGAAGTTGTTTGTTGACAGTC
AGTCGCCCATTCGCTGTGAAGTTGAGCTTGTGGTGTATAGAGTCC
Found at i:2447916 original size:24 final size:24
Alignment explanation
Indices: 2447871--2447916 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
2447861 ACATTAAATA
***
2447871 TGAAAAAAAGTAAATGGTAAGTGT
1 TGAAAAAAAGTAAATAAAAAGTGT
*
2447895 TGAATAAAAGTAAATAAAAAGT
1 TGAAAAAAAGTAAATAAAAAGT
2447917 AAATGGTAAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.24
Consensus pattern (24 bp):
TGAAAAAAAGTAAATAAAAAGTGT
Found at i:2447920 original size:35 final size:35
Alignment explanation
Indices: 2447875--2447945 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
2447865 TAAATATGAA
* *
2447875 AAAAAGTAAATGGTAAGTGTTGAATAAAAGTAAAT
1 AAAAAGTAAATGGTAAGTGCTGAATAAAAGGAAAT
*
2447910 AAAAAGTAAATGGTAAGTGCTGAATGAAAGGAAAT
1 AAAAAGTAAATGGTAAGTGCTGAATAAAAGGAAAT
2447945 A
1 A
2447946 TATAAAACGT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.54, C:0.01, G:0.23, T:0.23
Consensus pattern (35 bp):
AAAAAGTAAATGGTAAGTGCTGAATAAAAGGAAAT
Found at i:2450205 original size:22 final size:25
Alignment explanation
Indices: 2450177--2450228 Score: 74
Period size: 22 Copynumber: 2.2 Consensus size: 25
2450167 TGGTCCTGAA
*
2450177 ATAATAATA-TATA-ATTTAT-TAT
1 ATAATAATATTATATATATATATAT
2450199 ATAATAATATTATATATATATATAT
1 ATAATAATATTATATATATATATAT
2450224 ATAAT
1 ATAAT
2450229 TCATAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 9 0.35
23 4 0.15
24 5 0.19
25 8 0.31
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
ATAATAATATTATATATATATATAT
Found at i:2450212 original size:25 final size:25
Alignment explanation
Indices: 2450176--2450228 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
2450166 TTGGTCCTGA
*
2450176 AATAATAATATATA-ATTTATTATAT
1 AATAATAATATATATATATA-TATAT
*
2450201 AATAATATTATATATATATATATAT
1 AATAATAATATATATATATATATAT
2450226 AAT
1 AAT
2450229 TCATAATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
AATAATAATATATATATATATATAT
Found at i:2450223 original size:15 final size:15
Alignment explanation
Indices: 2450183--2450223 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
2450173 TGAAATAATA
*
2450183 ATATATA-ATTTATT
1 ATATATATATATATT
2450197 ATATA-ATA-ATATT
1 ATATATATATATATT
2450210 ATATATATATATAT
1 ATATATATATATAT
2450224 ATAATTCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
13 10 0.43
14 9 0.39
15 4 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATATATATATATT
Found at i:2454249 original size:17 final size:17
Alignment explanation
Indices: 2454175--2454242 Score: 72
Period size: 15 Copynumber: 4.2 Consensus size: 17
2454165 AATCAAAGCT
2454175 AAAAGAAAAAG-AAA-A
1 AAAAGAAAAAGCAAAGA
* *
2454190 GAAAGAAAAACCAAAG-
1 AAAAGAAAAAGCAAAGA
* *
2454206 AAAA-ATAGAGCAAAGA
1 AAAAGAAAAAGCAAAGA
2454222 AAAAGAAAAAGCAAAGA
1 AAAAGAAAAAGCAAAGA
2454239 AAAA
1 AAAA
2454243 AACAAAGAGA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
15 17 0.41
16 10 0.24
17 14 0.34
ACGTcount: A:0.76, C:0.06, G:0.16, T:0.01
Consensus pattern (17 bp):
AAAAGAAAAAGCAAAGA
Found at i:2455369 original size:20 final size:20
Alignment explanation
Indices: 2455344--2455382 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2455334 CAGTTTTGCA
2455344 TAGAACCGACTGGGAACCGG
1 TAGAACCGACTGGGAACCGG
**
2455364 TAGAACCGGTTGGGAACCG
1 TAGAACCGACTGGGAACCG
2455383 ACAAAATTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.23, G:0.36, T:0.13
Consensus pattern (20 bp):
TAGAACCGACTGGGAACCGG
Found at i:2458401 original size:54 final size:54
Alignment explanation
Indices: 2458130--2459459 Score: 1680
Period size: 53 Copynumber: 24.9 Consensus size: 54
2458120 TTTGGGAAAA
* * * * *
2458130 GGGTTCGCTCTTTCTTACTTCAGGGAGT-GGAACTCGAACAATCTTCTACCTAA
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
** * * * *
2458183 TAGTTTGCTCTCTCTTGCATCAGGGAGT-AGAACTCGAACAAACTTCTGCATAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
*
2458236 AGGTTCGCTCTCTCTTGCTTCAGGGAGT-AGAACTCGAACAATCTTCTGCCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * * *
2458289 AGGTTCACTCTCTCTTTCTTCAGGGAGT-AGAACTTGAACAATCTTCTGCCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
** * * *
2458342 AAGTTCGCTCTCTCTTACTTCAGGGAGTAAGAACTCGAATAATCTTTTGCCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* *
2458396 GAGTTCGCTCTCTCTTGCTTCAGGGACTAAGAACTCGAACAATCTTCTGCCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * * ***
2458450 GGGTTCGCTCACTCTTGCTTCAGGGAGTAAGAACTCAAATAATCTTCTATATAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * *
2458504 AGGTTCACTCTCTCTTGCTTCAGGGAGT-AGAACTCGAACAATCTTCTACCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* *
2458557 GGGTTCGCTCTCTCTTACTTCAGGGAGT-AGAACTCGAACAATCTTCTACCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * *
2458610 AGGTTCGCTCTCTCTTGCTTCAAGGAGT-AGAACTCAAACAATCTTCTGCCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* *
2458663 GAGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATTTTCTGCCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
*
2458717 GGGTTCACTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
**
2458771 GGGTTCATTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
*
2458825 GGGTTCGCTCTCTCTTGCTTCAGGGAGT-AGAACTCGAACAATCTTCTACCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * * * *
2458878 AGGTTCACT-TCCTCTTACTTCAGGGAGTAAGAAATCGAATAATCTTCTGCCTAC
1 GGGTTCGCTCT-CTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * *
2458932 GGGTTCACTCTCTCTTGTTTCAGGGAGTAAGAACT-GAACAATCTGCTGCCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * * *
2458985 GGGTTCGCTCTCTCTTGCTTCAAGGAGTAAGCACTCGAACAATCTTTTGCATAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
** * * * * * * *
2459039 TAGTTCACTCTTTTTTACTTTAGGGAGT-AGAAATCGAACAATCTTCTCCCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * *
2459092 GGGTTCGCTCTCTCTTACTTTAGGGAGT-AGAACTCGAACAATCTTTTGCCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * * * * *
2459145 GGGTTTGCTCTCTCTTGTTTTAGGGAGT-AGAACTCGAACAATCTTTTGTCTAA
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * ** * * * * * **
2459198 GGGTTTGTTCTCTCTTATTTTAGGGAGT-ATAACTCGATCATTCTTTTGTATAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
*
2459251 GGGTTCACTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * * * *
2459305 GAGTTCACTCTCTCTTGTTTCAGGGAGTAAGAACTCGAATAATCTTCTTCCTAC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * *
2459359 GGGTTCGCTCTCTCTTGCTTCAGGAATTAAGAACTCGAACAATCTTCTGCCTAT
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * * *
2459413 GGGTTCACTATCTCTTGTTTCAGGGAGTAAGAACTCAAACAATCTTC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTC
2459460 ATTTGCTTCA
Statistics
Matches: 1122, Mismatches: 148, Indels: 13
0.87 0.12 0.01
Matches are distributed among these distances:
52 1 0.00
53 583 0.52
54 537 0.48
55 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (54 bp):
GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
Found at i:2458751 original size:321 final size:322
Alignment explanation
Indices: 2458130--2459459 Score: 1755
Period size: 321 Copynumber: 4.1 Consensus size: 322
2458120 TTTGGGAAAA
* * * * * *
2458130 GGGTTCGCTCTTTCTTACTTCAGGGAGT-GGAACTCGAACAATCTTCTACCTA-ATAGTTTGCTC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTACATACA-GGTTCGCTC
* * * * *
2458193 TCTCTTGCATCAGGGAGTAGAACTCGAACAAACTTCTGCATACAGGTTCGCTCTCTCTTGCTTCA
65 TCTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACCTACAGGTTCGCTCTCTCTTACTTCA
*
2458258 GGGAGTAGAACTCGAACAATCTTCTGCCTACAGGTTCACTCTCTCTTTCTTCAGGGAGT-AGAAC
130 GGGAGTAGAACTCGAACAATCTTCTGCCTACAGGTTCACTCTCTCTTGCTTCAGGGAGTAAGAAC
* * * *
2458322 TTGAACAATCTTCTGCCTACAAGTTCGCTCTCTCTTACTTCAGGGAGTAAGAACTCGAATAATCT
195 TCGAACAATCTTCTGCCTACGAGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCT
* *
2458387 TTTGCCTACGAGTTCGCTCTCTCTTGCTTCAGGGACTAAGAACTCGAACAATCTTCTGCCTAC
260 TTTGCCTACGAGTTCACTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * * * *
2458450 GGGTTCGCTCACTCTTGCTTCAGGGAGTAAGAACTCAAATAATCTTCTATATACAGGTTCACTCT
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTACATACAGGTTCGCTCT
*
2458515 CTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACCTACGGGTTCGCTCTCTCTTACTTCAG
66 CTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACCTACAGGTTCGCTCTCTCTTACTTCAG
* * *
2458580 GGAGTAGAACTCGAACAATCTTCTACCTACAGGTTCGCTCTCTCTTGCTTCAAGGAGT-AGAACT
131 GGAGTAGAACTCGAACAATCTTCTGCCTACAGGTTCACTCTCTCTTGCTTCAGGGAGTAAGAACT
*
2458644 CAAACAATCTTCTGCCTACGAGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAAT-TT
196 CGAACAATCTTCTGCCTACGAGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTT
*
2458708 TCTGCCTACGGGTTCACTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
261 T-TGCCTACGAGTTCACTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
** * * *
2458771 GGGTTCATTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTACGGGTTCGCTCT
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTACATACAGGTTCGCTCT
*
2458836 CTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACCTACAGGTTCACT-TCCTCTTACTTCA
66 CTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACCTACAGGTTCGCTCT-CTCTTACTTCA
* * * *
2458900 GGGAGTAAGAAATCGAATAATCTTCTGCCTACGGGTTCACTCTCTCTTGTTTCAGGGAGTAAGAA
130 GGGAGT-AGAACTCGAACAATCTTCTGCCTACAGGTTCACTCTCTCTTGCTTCAGGGAGTAAGAA
* * * *
2458965 CT-GAACAATCTGCTGCCTACGGGTTCGCTCTCTCTTGCTTCAAGGAGTAAGCACTCGAACAATC
194 CTCGAACAATCTTCTGCCTACGAGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATC
* * * * * * * *
2459029 TTTTGCATACTAGTTCACTCTTTTTTACTTTAGGGAGT-AGAAATCGAACAATCTTCTCCCTAC
259 TTTTGCCTACGAGTTCACTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * * * * * *
2459092 GGGTTCGCTCTCTCTTACTTTAGGGAGT-AGAACTCGAACAATCTTTTGCCTACGGGTTTGCTCT
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTACATACAGGTTCGCTCT
* * * ** * * * *
2459156 CTCTTGTTTTAGGGAGTAGAACTCGAACAATCTTTTGTCTA-AGGGTTTGTTCTCTCTTATTTTA
66 CTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACCTACA-GGTTCGCTCTCTCTTACTTCA
* * * * ** *
2459220 GGGAGTATAACTCGATCATTCTTTTGTATACGGGTTCACTCTCTCTTGCTTCAGGGAGTAAGAAC
130 GGGAGTAGAACTCGAACAATCTTCTGCCTACAGGTTCACTCTCTCTTGCTTCAGGGAGTAAGAAC
* * *
2459285 TCGAACAATCTTCTGCCTACGAGTTCACTCTCTCTTGTTTCAGGGAGTAAGAACTCGAATAATCT
195 TCGAACAATCTTCTGCCTACGAGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCT
* * * * *
2459350 TCTT-CCTACGGGTTCGCTCTCTCTTGCTTCAGGAATTAAGAACTCGAACAATCTTCTGCCTAT
260 T-TTGCCTACGAGTTCACTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
* * * *
2459413 GGGTTCACTATCTCTTGTTTCAGGGAGTAAGAACTCAAACAATCTTC
1 GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTC
2459460 ATTTGCTTCA
Statistics
Matches: 883, Mismatches: 114, Indels: 24
0.86 0.11 0.02
Matches are distributed among these distances:
319 52 0.06
320 199 0.23
321 476 0.54
322 147 0.17
323 9 0.01
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (322 bp):
GGGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTACATACAGGTTCGCTCT
CTCTTGCTTCAGGGAGTAGAACTCGAACAATCTTCTACCTACAGGTTCGCTCTCTCTTACTTCAG
GGAGTAGAACTCGAACAATCTTCTGCCTACAGGTTCACTCTCTCTTGCTTCAGGGAGTAAGAACT
CGAACAATCTTCTGCCTACGAGTTCGCTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTT
TTGCCTACGAGTTCACTCTCTCTTGCTTCAGGGAGTAAGAACTCGAACAATCTTCTGCCTAC
Found at i:2459580 original size:37 final size:36
Alignment explanation
Indices: 2459460--2459564 Score: 138
Period size: 37 Copynumber: 2.8 Consensus size: 36
2459450 AACAATCTTC
*
2459460 ATTTGCTTCACTACTTTTCTATGGAGGCTTATAGATG
1 ATTTGCTTCACTACTTTTC-ATGAAGGCTTATAGATG
* * * *
2459497 ATTTACTTCCCTACCCTTTCTTGAAGGCTTATAGATG
1 ATTTGCTTCACTA-CTTTTCATGAAGGCTTATAGATG
2459534 ATTTGCTTCACTACTATTTCATGAAGGCTTA
1 ATTTGCTTCACTACT-TTTCATGAAGGCTTA
2459565 AGTTTGATTT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
36 1 0.02
37 51 0.89
38 5 0.09
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.42
Consensus pattern (36 bp):
ATTTGCTTCACTACTTTTCATGAAGGCTTATAGATG
Found at i:2460806 original size:19 final size:18
Alignment explanation
Indices: 2460784--2460844 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
2460774 TCTAGACCTA
2460784 TTTTTTATTTTTCTATCTC
1 TTTTTTATTTTTCT-TCTC
* *
2460803 TTTTTTCTTTTTTCTTTTC
1 TTTTTT-ATTTTTCTTCTC
* *
2460822 TTTTTCATTTTTTTTC-C
1 TTTTTTATTTTTCTTCTC
2460839 TTTTTT
1 TTTTTT
2460845 TCCATTTTTC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
17 6 0.18
18 7 0.21
19 14 0.41
20 7 0.21
ACGTcount: A:0.05, C:0.15, G:0.00, T:0.80
Consensus pattern (18 bp):
TTTTTTATTTTTCTTCTC
Found at i:2460834 original size:9 final size:9
Alignment explanation
Indices: 2460822--2460899 Score: 72
Period size: 9 Copynumber: 8.6 Consensus size: 9
2460812 TTTTCTTTTC
2460822 TTTTTCATTT
1 TTTTTCA-TT
*
2460832 TTTTTCCTT
1 TTTTTCATT
2460841 TTTTTCCA-T
1 TTTTT-CATT
*
2460850 TTTTCCA-T
1 TTTTTCATT
2460858 TTTTTCATT
1 TTTTTCATT
2460867 TTTTTCCATT
1 TTTTT-CATT
2460877 TTTTCTC-TT
1 TTTT-TCATT
*
2460886 CTTTTCATT
1 TTTTTCATT
2460895 TTTTT
1 TTTTT
2460900 TCTTCTTCAA
Statistics
Matches: 57, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
8 11 0.19
9 29 0.51
10 16 0.28
11 1 0.02
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.74
Consensus pattern (9 bp):
TTTTTCATT
Found at i:2460835 original size:10 final size:10
Alignment explanation
Indices: 2460810--2460901 Score: 70
Period size: 10 Copynumber: 9.7 Consensus size: 10
2460800 CTCTTTTTTC
*
2460810 TTTTTTCTTT
1 TTTTTTCATT
2460820 TCTTTTTCATT
1 T-TTTTTCATT
*
2460831 TTTTTTCCTT
1 TTTTTTCATT
*
2460841 TTTTTCCA--
1 TTTTTTCATT
*
2460849 TTTTTCCA--
1 TTTTTTCATT
2460857 TTTTTTCATT
1 TTTTTTCATT
*
2460867 TTTTTCCATT
1 TTTTTTCATT
*
2460877 TTTTCTC--T
1 TTTTTTCATT
*
2460885 TCTTTTCATT
1 TTTTTTCATT
2460895 TTTTTTC
1 TTTTTTC
2460902 TTCTTCAAGC
Statistics
Matches: 66, Mismatches: 11, Indels: 10
0.76 0.13 0.11
Matches are distributed among these distances:
8 21 0.32
10 36 0.55
11 9 0.14
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (10 bp):
TTTTTTCATT
Found at i:2460852 original size:7 final size:8
Alignment explanation
Indices: 2460841--2460879 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
2460831 TTTTTTCCTT
2460841 TTTTTCCA
1 TTTTTCCA
2460849 TTTTTCCA
1 TTTTTCCA
*
2460857 TTTTTTCA
1 TTTTTCCA
2460865 TTTTTTTCCA
1 --TTTTTCCA
2460875 TTTTT
1 TTTTT
2460880 TCTCTTCTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 20 0.74
10 7 0.26
ACGTcount: A:0.10, C:0.18, G:0.00, T:0.72
Consensus pattern (8 bp):
TTTTTCCA
Found at i:2460903 original size:18 final size:19
Alignment explanation
Indices: 2460803--2460906 Score: 69
Period size: 18 Copynumber: 5.6 Consensus size: 19
2460793 TTTCTATCTC
*
2460803 TTTTTTCTT-TTTT-CTTT
1 TTTTTTCTTCTTTTCCATT
*
2460820 TCTTTTTCATTTTTTTTCC-TT
1 T-TTTTTC--TTCTTTTCCATT
* *
2460841 TTTTTCCAT-TTTTCCA--
1 TTTTTTCTTCTTTTCCATT
*
2460857 TTTTTTCATTTTTTTCCATT
1 TTTTTTC-TTCTTTTCCATT
*
2460877 TTTTCTCTTCTTTT-CATT
1 TTTTTTCTTCTTTTCCATT
2460895 TTTTTTCTTCTT
1 TTTTTTCTTCTT
2460907 CAAGCAAAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
16 6 0.09
17 8 0.11
18 29 0.41
19 6 0.09
20 13 0.19
21 7 0.10
22 1 0.01
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTTCTTCTTTTCCATT
Found at i:2473691 original size:33 final size:33
Alignment explanation
Indices: 2473653--2473725 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
2473643 AGAAATTATC
*
2473653 TTCATATTTCATCATGCTTATCAGGATTAATCT
1 TTCATATTTCATCATGCTCATCAGGATTAATCT
2473686 TTCATATTTCATCATGCTCATCAGGATTAATCT
1 TTCATATTTCATCATGCTCATCAGGATTAATCT
*
2473719 TTTATAT
1 TTCATAT
2473726 ACAAAAGGTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.27, C:0.18, G:0.08, T:0.47
Consensus pattern (33 bp):
TTCATATTTCATCATGCTCATCAGGATTAATCT
Found at i:2474757 original size:3 final size:3
Alignment explanation
Indices: 2474749--2474783 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
2474739 AGTATCATGT
2474749 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
2474784 TGTTGTTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:2475384 original size:16 final size:17
Alignment explanation
Indices: 2475347--2475378 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
2475337 ACGCATACCA
2475347 ATTTTTGTCTTAAAATG
1 ATTTTTGTCTTAAAATG
2475364 ATTTTT-TCTTAAAAT
1 ATTTTTGTCTTAAAAT
2475379 TGTTTTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.56
Consensus pattern (17 bp):
ATTTTTGTCTTAAAATG
Found at i:2479740 original size:57 final size:58
Alignment explanation
Indices: 2479673--2479785 Score: 192
Period size: 57 Copynumber: 2.0 Consensus size: 58
2479663 GTAGTCTCCT
*
2479673 TATTATCATCGTCGGTTGCGTGTAGAGGGGTGAGCA-TATCAAATTTTTGAAAAAGTG
1 TATTATCATCGTCGGTTGCGTGTAGAGGGGTGAGCATTATCAAATTTTTAAAAAAGTG
* *
2479730 TATTATCATCGTCGGTTGCGTGTTGAGGGGTGAGCATTATCAACTTTTTAAAAAAG
1 TATTATCATCGTCGGTTGCGTGTAGAGGGGTGAGCATTATCAAATTTTTAAAAAAG
2479786 CGTAATCGGC
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
57 35 0.67
58 17 0.33
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.35
Consensus pattern (58 bp):
TATTATCATCGTCGGTTGCGTGTAGAGGGGTGAGCATTATCAAATTTTTAAAAAAGTG
Found at i:2483908 original size:31 final size:30
Alignment explanation
Indices: 2483873--2483944 Score: 75
Period size: 24 Copynumber: 2.6 Consensus size: 30
2483863 AAAATTTCTA
*
2483873 CAAAAACAATAAACATACCAGTTAGATATAC
1 CAAAAACAATAAACATA-CAGTCAGATATAC
*
2483904 CAAAAAC--T--AC--ACTGTCAGATATAC
1 CAAAAACAATAAACATACAGTCAGATATAC
2483928 CAAAAACAATAAACATA
1 CAAAAACAATAAACATA
2483945 AATAGTAGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 13
0.69 0.04 0.27
Matches are distributed among these distances:
24 18 0.55
25 1 0.03
26 1 0.03
27 2 0.06
28 2 0.06
29 1 0.03
30 1 0.03
31 7 0.21
ACGTcount: A:0.56, C:0.21, G:0.06, T:0.18
Consensus pattern (30 bp):
CAAAAACAATAAACATACAGTCAGATATAC
Found at i:2484081 original size:33 final size:34
Alignment explanation
Indices: 2484024--2484087 Score: 121
Period size: 33 Copynumber: 1.9 Consensus size: 34
2484014 ACGAGATAAT
2484024 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
1 GAGAATCGCAACGCGGAAATGACTATCGCAACGA
2484058 GAGAATCGCAACGC-GAAATGACTATCGCAA
1 GAGAATCGCAACGCGGAAATGACTATCGCAA
2484088 TGCAAAATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 16 0.53
34 14 0.47
ACGTcount: A:0.39, C:0.23, G:0.25, T:0.12
Consensus pattern (34 bp):
GAGAATCGCAACGCGGAAATGACTATCGCAACGA
Found at i:2484109 original size:52 final size:53
Alignment explanation
Indices: 2484007--2484144 Score: 179
Period size: 52 Copynumber: 2.6 Consensus size: 53
2483997 TTGAAATAAA
* * * * ** *
2484007 AATCGCAACGAGATAATGAGAATCGCAACGCGGAAATGACTATCGCAACGAGAG
1 AATCGCAACGCGA-AATGAAAATCGCAATGCGAAAATGAAAATCACAACGAGAG
**
2484061 AATCGCAACGCGAAATGACTATCGCAATGC-AAAATGAAAATCACAACGAGAG
1 AATCGCAACGCGAAATGAAAATCGCAATGCGAAAATGAAAATCACAACGAGAG
2484113 AATCGCAACGCGAAATGAAAATCGCAATGCGA
1 AATCGCAACGCGAAATGAAAATCGCAATGCGA
2484145 CGATTCTCTC
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
52 46 0.63
53 15 0.21
54 12 0.16
ACGTcount: A:0.43, C:0.21, G:0.22, T:0.13
Consensus pattern (53 bp):
AATCGCAACGCGAAATGAAAATCGCAATGCGAAAATGAAAATCACAACGAGAG
Found at i:2484137 original size:19 final size:19
Alignment explanation
Indices: 2483999--2484144 Score: 87
Period size: 19 Copynumber: 8.1 Consensus size: 19
2483989 TCTTTTGGTT
* *
2483999 GAAATAAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
*
2484018 GATAATGAGAATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
2484038 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
*
2484056 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
** *
2484072 GAAATGACTATCGCAATGC
1 GAAATGAAAATCGCAACGC
* *
2484091 AAAATGAAAATCACAA--C
1 GAAATGAAAATCGCAACGC
*
2484108 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
2484124 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
2484143 GA
1 GA
2484145 CGATTCTCTC
Statistics
Matches: 96, Mismatches: 19, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
14 18 0.19
15 2 0.02
16 4 0.04
17 2 0.02
18 3 0.03
19 39 0.41
20 26 0.27
21 2 0.02
ACGTcount: A:0.45, C:0.20, G:0.22, T:0.13
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:2484713 original size:20 final size:20
Alignment explanation
Indices: 2484690--2484906 Score: 127
Period size: 20 Copynumber: 10.7 Consensus size: 20
2484680 TGATAGTAAG
2484690 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
* *
2484710 ATTCGCATTGCGATTTTCCT
1 ATTCGCATTGCGATTTACGT
*
2484730 AATTCGCATTGCGATTTACTT
1 -ATTCGCATTGCGATTTACGT
* * *
2484751 AATCGCGTTGCGATTTACAT
1 ATTCGCATTGCGATTTACGT
* * *
2484771 ATTCGCATTGCGAATTATGAA
1 ATTCGCATTGCGATTTACG-T
* ** *
2484792 AATCGCAACGCGA-ATACGT
1 ATTCGCATTGCGATTTACGT
* * * * *
2484811 AAATCGCAATGCGAATTAGGAAA
1 -ATTCGCATTGCGATTTACG--T
*
2484834 ATT-GCATTGCGATAGT-CAGT
1 ATTCGCATTGCGAT-TTAC-GT
* **
2484854 A-TCGCATTGCGATTTTCCAA
1 ATTCGCATTGCGA-TTTACGT
*
2484874 ATTCGCATTGCGATTTACTT
1 ATTCGCATTGCGATTTACGT
2484894 ATTCGCATTGCGA
1 ATTCGCATTGCGA
2484907 ATTGGGAAAA
Statistics
Matches: 150, Mismatches: 35, Indels: 24
0.72 0.17 0.11
Matches are distributed among these distances:
19 1 0.01
20 93 0.62
21 52 0.35
22 4 0.03
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Found at i:2484738 original size:41 final size:40
Alignment explanation
Indices: 2484690--2484906 Score: 143
Period size: 41 Copynumber: 5.3 Consensus size: 40
2484680 TGATAGTAAG
* * *
2484690 ATTCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCT
1 ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACAT
* *
2484730 AATTCGCATTGCGATTTACTTAATCGCGTTGCGATTTACAT
1 -ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACAT
* * * ** * *
2484771 ATTCGCATTGCGAATTATGAAAATCGCAACGCGA-ATACGT
1 ATTCGCATTGCGATTTACG-TAATCGCATTGCGATTTACAT
* * * * * * *
2484811 AAATCGCAATGCGAATTAGGAAAATTGCATTGCGATAGT-CAGT
1 -ATTCGCATTGCGATTTACG-TAATCGCATTGCGAT-TTACA-T
* ** *
2484854 A-TCGCATTGCGATTTTCCAAATTCGCATTGCGATTTACTT
1 ATTCGCATTGCGATTTACGTAA-TCGCATTGCGATTTACAT
2484894 ATTCGCATTGCGA
1 ATTCGCATTGCGA
2484907 ATTGGGAAAA
Statistics
Matches: 138, Mismatches: 30, Indels: 16
0.75 0.16 0.09
Matches are distributed among these distances:
40 26 0.19
41 108 0.78
42 2 0.01
43 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (40 bp):
ATTCGCATTGCGATTTACGTAATCGCATTGCGATTTACAT
Found at i:2484798 original size:61 final size:60
Alignment explanation
Indices: 2484692--2484906 Score: 175
Period size: 61 Copynumber: 3.5 Consensus size: 60
2484682 ATAGTAAGAT
* * * * *
2484692 TCGCATTGCGATTTACGTATTCGCATTGCGATTTTCCTAATTCGCATTGCGATTTACTTAA
1 TCGCATTGCGATTTACATATTCGCATTGCGATTAT-CAAAATCGCATTGCGATTTACTAAA
* * ** *
2484753 TCGCGTTGCGATTTACATATTCGCATTGCGAATTATGAAAATCGCAACGCGA-ATACGTAAA
1 TCGCATTGCGATTTACATATTCGCATTGCG-ATTATCAAAATCGCATTGCGATTTAC-TAAA
* * * * ** * *
2484814 TCGCAATGCGAATTAGGAAAATT-GCATTGCGA-TAGTCAGTATCGCATTGCGATTTTCCAAA
1 TCGCATTGCGATTTA--CATATTCGCATTGCGATTA-TCAAAATCGCATTGCGATTTACTAAA
*
2484875 TTCGCATTGCGATTTACTTATTCGCATTGCGA
1 -TCGCATTGCGATTTACATATTCGCATTGCGA
2484907 ATTGGGAAAA
Statistics
Matches: 118, Mismatches: 28, Indels: 16
0.73 0.17 0.10
Matches are distributed among these distances:
60 8 0.07
61 79 0.67
62 27 0.23
63 4 0.03
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (60 bp):
TCGCATTGCGATTTACATATTCGCATTGCGATTATCAAAATCGCATTGCGATTTACTAAA
Found at i:2484844 original size:21 final size:21
Alignment explanation
Indices: 2484773--2484845 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 21
2484763 ATTTACATAT
* *
2484773 TCGCATTGCGAATTATGAAAA
1 TCGCAATGCGAATTACGAAAA
* *
2484794 TCGCAACGCGAA-TACGTAAA
1 TCGCAATGCGAATTACGAAAA
*
2484814 TCGCAATGCGAATTAGGAAAA
1 TCGCAATGCGAATTACGAAAA
* *
2484835 TTGCATTGCGA
1 TCGCAATGCGA
2484846 TAGTCAGTAT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 17 0.40
21 25 0.60
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAATTACGAAAA
Found at i:2484948 original size:21 final size:22
Alignment explanation
Indices: 2484896--2484948 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
2484886 ATTTACTTAT
2484896 TCGCATTGCG-AATTGGGAAAA
1 TCGCATTGCGAAATTGGGAAAA
**
2484917 TCGCAACGCGAAATT-GGAAAA
1 TCGCATTGCGAAATTGGGAAAA
2484938 TCGCATTGCGA
1 TCGCATTGCGA
2484949 TAGTCATAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 23 0.85
22 4 0.15
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (22 bp):
TCGCATTGCGAAATTGGGAAAA
Found at i:2492937 original size:21 final size:20
Alignment explanation
Indices: 2492899--2492937 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
2492889 TAATGAATGG
*
2492899 TTGTTTTTGTATGTTGTTAT
1 TTGTTTTTGTATGATGTTAT
*
2492919 TTGTTTTGTTTATGATGTT
1 TTGTTTT-TGTATGATGTT
2492938 TAATGCCTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.10, C:0.00, G:0.21, T:0.69
Consensus pattern (20 bp):
TTGTTTTTGTATGATGTTAT
Found at i:2504874 original size:20 final size:21
Alignment explanation
Indices: 2504825--2504896 Score: 99
Period size: 21 Copynumber: 3.2 Consensus size: 21
2504815 AAAAATACTA
2504825 CTCCCCCTTACTTTAACACTT
1 CTCCCCCTTACTTTAACACTT
2504846 CTCCCCCTTACTTTAACACTT
1 CTCCCCCTTACTTTAACACTT
*
2504867 CTCCCCTTTAAAACATTTAACACTT
1 CTCCCCCTT---AC-TTTAACACTT
2504892 CTCCC
1 CTCCC
2504897 TCTTTTTGTT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
21 29 0.63
24 2 0.04
25 15 0.33
ACGTcount: A:0.22, C:0.42, G:0.00, T:0.36
Consensus pattern (21 bp):
CTCCCCCTTACTTTAACACTT
Found at i:2507073 original size:19 final size:18
Alignment explanation
Indices: 2507045--2507084 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
2507035 AAAACCAGAA
*
2507045 CCCCAGGGGGTATCGATT
1 CCCCAGGGGGAATCGATT
*
2507063 CCCCTAGGGGGAATCGGTT
1 CCCC-AGGGGGAATCGATT
2507082 CCC
1 CCC
2507085 ATTCAAAGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.15, C:0.33, G:0.33, T:0.20
Consensus pattern (18 bp):
CCCCAGGGGGAATCGATT
Found at i:2507115 original size:22 final size:23
Alignment explanation
Indices: 2507068--2507129 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
2507058 CGATTCCCCT
2507068 AGGGGGAATCGGTTCCCATTCAA
1 AGGGGGAATCGGTTCCCATTCAA
*
2507091 AGGGGGAATCGGTTCCCCTTC-A
1 AGGGGGAATCGGTTCCCATTCAA
* *
2507113 AGGGGGTATCGATTCCC
1 AGGGGGAATCGGTTCCC
2507130 TCTGCCCTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
22 16 0.44
23 20 0.56
ACGTcount: A:0.21, C:0.24, G:0.32, T:0.23
Consensus pattern (23 bp):
AGGGGGAATCGGTTCCCATTCAA
Found at i:2511391 original size:31 final size:31
Alignment explanation
Indices: 2511339--2511403 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
2511329 TGTCCTAAGG
* *
2511339 ACCTATCCATATCTCCTGAAGGATATAGGTA
1 ACCTATCCATATCTCCTGAAGGACATAAGTA
* *
2511370 ACCTGTCCATATGT-CTCGAAGGACATAAGTA
1 ACCTATCCATATCTCCT-GAAGGACATAAGTA
2511401 ACC
1 ACC
2511404 CTCGACTCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
30 2 0.07
31 27 0.93
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (31 bp):
ACCTATCCATATCTCCTGAAGGACATAAGTA
Found at i:2511712 original size:18 final size:19
Alignment explanation
Indices: 2511689--2511731 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
2511679 AGATCATCAT
*
2511689 CATATAACATAT-ATATAA
1 CATATAACATATCACATAA
2511707 CATAT-ACATATCACATAA
1 CATATAACATATCACATAA
2511725 CATATAA
1 CATATAA
2511732 TACATATCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 6 0.27
18 15 0.68
19 1 0.05
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.30
Consensus pattern (19 bp):
CATATAACATATCACATAA
Found at i:2513958 original size:32 final size:32
Alignment explanation
Indices: 2513887--2514026 Score: 151
Period size: 32 Copynumber: 4.3 Consensus size: 32
2513877 GATAAAATAA
*
2513887 AATGTTAGTAAGAACAATAAAAATAAAAAGTTAG
1 AATGTTAGTATGAACAAT-AAAAT-AAAAGTTAG
*
2513921 TATGTTAGTATGAACAA-ATAAATAAAAGTTAG
1 AATGTTAGTATGAACAATA-AAATAAAAGTTAG
* *
2513953 AATGTTAGT-TCGAACGATAAAATAAATGTTAG
1 AATGTTAGTAT-GAACAATAAAATAAAAGTTAG
* *
2513985 AATGTTAGCT-CGAACAATAAAATAAAAATTAG
1 AATGTTAG-TATGAACAATAAAATAAAAGTTAG
*
2514017 AATGTCAGTA
1 AATGTTAGTA
2514027 AGTTAGTGAC
Statistics
Matches: 91, Mismatches: 10, Indels: 12
0.81 0.09 0.11
Matches are distributed among these distances:
31 2 0.02
32 68 0.75
33 6 0.07
34 15 0.16
ACGTcount: A:0.51, C:0.06, G:0.16, T:0.28
Consensus pattern (32 bp):
AATGTTAGTATGAACAATAAAATAAAAGTTAG
Found at i:2517976 original size:14 final size:14
Alignment explanation
Indices: 2517959--2517986 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
2517949 ATCATAACAA
2517959 AATTATATAACTAT
1 AATTATATAACTAT
2517973 AATTATATAACTAT
1 AATTATATAACTAT
2517987 TCTTTAACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
AATTATATAACTAT
Found at i:2520190 original size:14 final size:14
Alignment explanation
Indices: 2520173--2520205 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
2520163 ATTTCTATGT
*
2520173 AGGGAATTATTTGC
1 AGGGAATTATTTAC
2520187 AGGGAATTATTTAC
1 AGGGAATTATTTAC
2520201 AGGGA
1 AGGGA
2520206 TTACTCCCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.30, T:0.30
Consensus pattern (14 bp):
AGGGAATTATTTAC
Found at i:2536244 original size:54 final size:54
Alignment explanation
Indices: 2536116--2536246 Score: 172
Period size: 54 Copynumber: 2.4 Consensus size: 54
2536106 CAATACTTTA
* * *
2536116 AGGATGGTATCGATACCCTTAAAACATCGAATGCCAGATTGGTATAGGTACCTTG
1 AGGA-GGTATCGATACCCTTGAAACATCGAATGCCAGATTAGTATAGGTACCATG
** ** *
2536171 AGGAGGTATCGATACCCTTGAAACATCGAATGTTATTTTAGTATCGGTACCATG
1 AGGAGGTATCGATACCCTTGAAACATCGAATGCCAGATTAGTATAGGTACCATG
*
2536225 AGGAGGTGTCGATACCCTTGAA
1 AGGAGGTATCGATACCCTTGAA
2536247 GGGTAGTGTC
Statistics
Matches: 67, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
54 63 0.94
55 4 0.06
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (54 bp):
AGGAGGTATCGATACCCTTGAAACATCGAATGCCAGATTAGTATAGGTACCATG
Found at i:2536255 original size:22 final size:22
Alignment explanation
Indices: 2536230--2536284 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
2536220 CCATGAGGAG
2536230 GTGTCGATACCCTTGAAGGGTA
1 GTGTCGATACCCTTGAAGGGTA
2536252 GTGTCGATACCCTTGAAGGGTA
1 GTGTCGATACCCTTGAAGGGTA
*
2536274 GTATCGATACC
1 GTGTCGATACC
2536285 ATTAGGGTAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (22 bp):
GTGTCGATACCCTTGAAGGGTA
Found at i:2536293 original size:20 final size:21
Alignment explanation
Indices: 2536233--2536296 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 21
2536223 TGAGGAGGTG
* *
2536233 TCGATACCCTTGAAGGGTAGTG
1 TCGATACCATT-AAGGGTAGTA
*
2536255 TCGATACCCTTGAAGGGTAGTA
1 TCGATACCATT-AAGGGTAGTA
2536277 TCGATACCATT-AGGGTAGTA
1 TCGATACCATTAAGGGTAGTA
2536297 CCGTTACTTC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
20 9 0.22
22 31 0.77
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TCGATACCATTAAGGGTAGTA
Found at i:2536681 original size:21 final size:21
Alignment explanation
Indices: 2536655--2536705 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
2536645 ATGTTATGGA
*
2536655 AATGTGAACTTTGAATAAGTG
1 AATGTGAACTTTGAACAAGTG
*
2536676 AATGTGAACTTTGAACCAGTG
1 AATGTGAACTTTGAACAAGTG
2536697 AATGTGAAC
1 AATGTGAAC
2536706 AAACTCTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (21 bp):
AATGTGAACTTTGAACAAGTG
Found at i:2536738 original size:16 final size:16
Alignment explanation
Indices: 2536719--2536753 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
2536709 CTCTATGAGA
2536719 AAGAAACTATGTGAAT
1 AAGAAACTATGTGAAT
* *
2536735 AAGAAACTCTTTGAAT
1 AAGAAACTATGTGAAT
2536751 AAG
1 AAG
2536754 GATTGAACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.49, C:0.09, G:0.17, T:0.26
Consensus pattern (16 bp):
AAGAAACTATGTGAAT
Found at i:2536888 original size:21 final size:21
Alignment explanation
Indices: 2536838--2536918 Score: 99
Period size: 21 Copynumber: 3.8 Consensus size: 21
2536828 GTAGAGGGTT
* *
2536838 TTATGTGGCACTTCGGTGCAAAC
1 TTATGTGGCACTTCGG-G-ACAG
* **
2536861 CTATGTGGTTCTTCGGGACAG
1 TTATGTGGCACTTCGGGACAG
2536882 TTATGTGGCACTTCGGGACAG
1 TTATGTGGCACTTCGGGACAG
2536903 TTATGTGGCACTTCGG
1 TTATGTGGCACTTCGG
2536919 TGCAAATTAC
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
21 36 0.72
22 1 0.02
23 13 0.26
ACGTcount: A:0.17, C:0.20, G:0.31, T:0.32
Consensus pattern (21 bp):
TTATGTGGCACTTCGGGACAG
Found at i:2542339 original size:21 final size:21
Alignment explanation
Indices: 2542314--2542360 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
2542304 TTATGGAAAT
*
2542314 TGAACTTTGAATAAGTGAATG
1 TGAACTTTGAACAAGTGAATG
*
2542335 TGAACTTTGAACCAGTGAATG
1 TGAACTTTGAACAAGTGAATG
2542356 TGAAC
1 TGAAC
2542361 AAACTCTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (21 bp):
TGAACTTTGAACAAGTGAATG
Found at i:2550006 original size:22 final size:21
Alignment explanation
Indices: 2549971--2550012 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
2549961 AAATTGAGTT
*
2549971 ATTTTTTTTCTTTCATTATCC
1 ATTTTTTTTATTTCATTATCC
*
2549992 ATTTTATTTTATTTCTTTATC
1 ATTTT-TTTTATTTCATTATC
2550013 TATTGTAGGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (21 bp):
ATTTTTTTTATTTCATTATCC
Found at i:2554525 original size:21 final size:21
Alignment explanation
Indices: 2554496--2554537 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
2554486 GTAAAGGGTT
2554496 TTATATGGTCCTTCGGGACAA
1 TTATATGGTCCTTCGGGACAA
* *
2554517 TTATGTGGTTCTTCGGGACAA
1 TTATATGGTCCTTCGGGACAA
2554538 ATATCGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (21 bp):
TTATATGGTCCTTCGGGACAA
Found at i:2555820 original size:45 final size:45
Alignment explanation
Indices: 2555752--2555982 Score: 336
Period size: 45 Copynumber: 5.1 Consensus size: 45
2555742 GATGTACTAC
2555752 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
1 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
* * *
2555797 ATAAAATGCATAACGGTGAATTAAAGGCATGAAATGATGCCATAA
1 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
*
2555842 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCAATAA
1 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
* * *
2555887 AGGAAATGCATAACGGTGCATTAAAGGCCTAAAAGGATGCCATAA
1 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
* * * * * * *
2555932 ATGAAATTCATAATGGTGTATTAAAGGTATGAACGGATACCGTAA
1 ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
2555977 ATGAAA
1 ATGAAA
2555983 ATAATGAATA
Statistics
Matches: 165, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 165 1.00
ACGTcount: A:0.44, C:0.12, G:0.23, T:0.22
Consensus pattern (45 bp):
ATGAAATGCATAACGGTGCATTAAAGGCATGAAAGGATGCCATAA
Found at i:2558718 original size:12 final size:12
Alignment explanation
Indices: 2558703--2558753 Score: 50
Period size: 12 Copynumber: 4.1 Consensus size: 12
2558693 CCTGAAAAAG
*
2558703 ACAAGGAAAATA
1 ACAAGTAAAATA
2558715 ACAAGTAAAACTA
1 ACAAGTAAAA-TA
*
2558728 TACAA-AAAAATGA
1 -ACAAGTAAAAT-A
2558741 ACAAGTAAAATA
1 ACAAGTAAAATA
2558753 A
1 A
2558754 AAATGCTATG
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
12 16 0.50
13 12 0.38
14 4 0.12
ACGTcount: A:0.67, C:0.10, G:0.10, T:0.14
Consensus pattern (12 bp):
ACAAGTAAAATA
Found at i:2561662 original size:18 final size:18
Alignment explanation
Indices: 2561636--2561671 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
2561626 TTGGAATGAC
*
2561636 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
2561654 TGAATTAAATAATAAGAT
1 TGAAGTAAATAATAAGAT
2561672 CGGATGGAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.31
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:2590896 original size:18 final size:18
Alignment explanation
Indices: 2590873--2590915 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
2590863 TTCTTTATTA
**
2590873 CTTTTAATAGTAAAAGTT
1 CTTTTAATAACAAAAGTT
*
2590891 CTTTTAGTAACAAAAGTT
1 CTTTTAATAACAAAAGTT
2590909 CTTTTAA
1 CTTTTAA
2590916 GGGTAAACTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.44
Consensus pattern (18 bp):
CTTTTAATAACAAAAGTT
Found at i:2591489 original size:24 final size:25
Alignment explanation
Indices: 2591457--2591517 Score: 115
Period size: 24 Copynumber: 2.5 Consensus size: 25
2591447 AGGATATGTT
2591457 TAATTCATGCATAGATTT-GGGGTG
1 TAATTCATGCATAGATTTGGGGGTG
2591481 TAATTCATGCATAGATTTGGGGGTG
1 TAATTCATGCATAGATTTGGGGGTG
2591506 TAATTCATGCAT
1 TAATTCATGCAT
2591518 GGACGTGGGA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 18 0.50
25 18 0.50
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.38
Consensus pattern (25 bp):
TAATTCATGCATAGATTTGGGGGTG
Found at i:2591526 original size:25 final size:24
Alignment explanation
Indices: 2591457--2591517 Score: 104
Period size: 25 Copynumber: 2.5 Consensus size: 24
2591447 AGGATATGTT
*
2591457 TAATTCATGCATAGATTTGGGGTG
1 TAATTCATGCATAGATTGGGGGTG
2591481 TAATTCATGCATAGATTTGGGGGTG
1 TAATTCATGCATAGA-TTGGGGGTG
2591506 TAATTCATGCAT
1 TAATTCATGCAT
2591518 GGACGTGGGA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
24 15 0.43
25 20 0.57
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.38
Consensus pattern (24 bp):
TAATTCATGCATAGATTGGGGGTG
Found at i:2592452 original size:20 final size:20
Alignment explanation
Indices: 2592429--2592535 Score: 119
Period size: 20 Copynumber: 5.3 Consensus size: 20
2592419 GTTTCCAAAT
*
2592429 TCGCAATGCGAATCTGTAAA
1 TCGCAACGCGAATCTGTAAA
*
2592449 TCGCAACGCGAATTTGTAAA
1 TCGCAACGCGAATCTGTAAA
* * * *
2592469 TCGGAACACAAAAT-T-CAAA
1 TCGCAACGC-GAATCTGTAAA
*
2592488 TTCGCAATGCGAATCTGTAAA
1 -TCGCAACGCGAATCTGTAAA
2592509 TCGCAACGCGAATCTGTAAA
1 TCGCAACGCGAATCTGTAAA
2592529 TCGCAAC
1 TCGCAAC
2592536 ACAGAAGTCA
Statistics
Matches: 71, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
19 6 0.08
20 59 0.83
21 6 0.08
ACGTcount: A:0.37, C:0.22, G:0.18, T:0.22
Consensus pattern (20 bp):
TCGCAACGCGAATCTGTAAA
Found at i:2592492 original size:60 final size:60
Alignment explanation
Indices: 2592424--2592675 Score: 232
Period size: 60 Copynumber: 4.2 Consensus size: 60
2592414 ACCCAGTTTC
* * *
2592424 CAAATTCGCAATGCGAATCTGTAAATCGCAACGCGAATTTGTAAATCGGAACACAAAATT
1 CAAATTCGCAATGCGAATCTGTAAATCGCAACGCGAATCTGTAAATCGCAACACAAAAGT
*
2592484 CAAATTCGCAATGCGAATCTGTAAATCGCAACGCGAATCTGTAAATCGCAACACAGAAGT
1 CAAATTCGCAATGCGAATCTGTAAATCGCAACGCGAATCTGTAAATCGCAACACAAAAGT
* * * **
2592544 CAAATTCGCAACGCG-AT-AGTCAAATTCGCAACACTGAAT-T-TCAAATTCAAAACACAAAAGT
1 CAAATTCGCAATGCGAATCTGT-AAA-TCGCAACGC-GAATCTGT-AAA-TCGCAACACAAAAGT
* * * * * *
2592605 CTAATTCGCAATGC-AAT-AGTCAAATTCGCAACAC-AAT-AGTCAAATTCGCAACGCGAAAGT
1 CAAATTCGCAATGCGAATCTGT-AAA-TCGCAACGCGAATCTGT-AAA-TCGCAACACAAAAGT
2592665 CAAATTCGCAA
1 CAAATTCGCAA
2592676 AGCGCGTTTA
Statistics
Matches: 167, Mismatches: 18, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
58 2 0.01
59 9 0.05
60 109 0.65
61 47 0.28
ACGTcount: A:0.41, C:0.23, G:0.15, T:0.21
Consensus pattern (60 bp):
CAAATTCGCAATGCGAATCTGTAAATCGCAACGCGAATCTGTAAATCGCAACACAAAAGT
Found at i:2592552 original size:20 final size:20
Alignment explanation
Indices: 2592529--2592675 Score: 131
Period size: 20 Copynumber: 7.3 Consensus size: 20
2592519 AATCTGTAAA
2592529 TCGCAACACAGAAGTCAAAT
1 TCGCAACACAGAAGTCAAAT
*
2592549 TCGCAACGC-GATAGTCAAAT
1 TCGCAACACAGA-AGTCAAAT
* *
2592569 TCGCAACACTGAATTTCAAAT
1 TCGCAACACAGAA-GTCAAAT
** * *
2592590 TCAAAACACAAAAGTCTAAT
1 TCGCAACACAGAAGTCAAAT
**
2592610 TCGCAATGCA-ATAGTCAAAT
1 TCGCAACACAGA-AGTCAAAT
2592630 TCGCAACACA-ATAGTCAAAT
1 TCGCAACACAGA-AGTCAAAT
*
2592650 TCGCAACGC-GAAAGTCAAAT
1 TCGCAACACAG-AAGTCAAAT
2592670 TCGCAA
1 TCGCAA
2592676 AGCGCGTTTA
Statistics
Matches: 104, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
19 3 0.03
20 83 0.80
21 18 0.17
ACGTcount: A:0.42, C:0.24, G:0.14, T:0.20
Consensus pattern (20 bp):
TCGCAACACAGAAGTCAAAT
Found at i:2592573 original size:40 final size:40
Alignment explanation
Indices: 2592529--2592675 Score: 154
Period size: 40 Copynumber: 3.6 Consensus size: 40
2592519 AATCTGTAAA
* *
2592529 TCGCAACACAGAAGTCAAATTCGCAACGCGATAGTCAAAT
1 TCGCAACACAGAAGTCAAATTCGCAACACAATAGTCAAAT
* * ** * *
2592569 TCGCAACACTGAATTTCAAATTCAAAACACAAAAGTCTAAT
1 TCGCAACACAGAA-GTCAAATTCGCAACACAATAGTCAAAT
**
2592610 TCGCAATGCA-ATAGTCAAATTCGCAACACAATAGTCAAAT
1 TCGCAACACAGA-AGTCAAATTCGCAACACAATAGTCAAAT
*
2592650 TCGCAACGC-GAAAGTCAAATTCGCAA
1 TCGCAACACAG-AAGTCAAATTCGCAA
2592676 AGCGCGTTTA
Statistics
Matches: 86, Mismatches: 17, Indels: 8
0.77 0.15 0.07
Matches are distributed among these distances:
40 57 0.66
41 29 0.34
ACGTcount: A:0.42, C:0.24, G:0.14, T:0.20
Consensus pattern (40 bp):
TCGCAACACAGAAGTCAAATTCGCAACACAATAGTCAAAT
Found at i:2592589 original size:21 final size:20
Alignment explanation
Indices: 2592483--2592675 Score: 123
Period size: 20 Copynumber: 9.6 Consensus size: 20
2592473 AACACAAAAT
**
2592483 TCAAATTCGCAATGCGAATCTG
1 TCAAATTCGCAACACGAA--TG
*
2592505 T-AAA-TCGCAACGCGAATCTG
1 TCAAATTCGCAACACGAA--TG
2592525 T-AAA-TCGCAACACAGAA-G
1 TCAAATTCGCAACAC-GAATG
*
2592543 TCAAATTCGCAACGCG-ATAG
1 TCAAATTCGCAACACGAAT-G
*
2592563 TCAAATTCGCAACACTGAATT
1 TCAAATTCGCAACAC-GAATG
** * *
2592584 TCAAATTCAAAACACAAAAG
1 TCAAATTCGCAACACGAATG
* **
2592604 TCTAATTCGCAATGC-AATAG
1 TCAAATTCGCAACACGAAT-G
2592624 TCAAATTCGCAACAC-AATAG
1 TCAAATTCGCAACACGAAT-G
* *
2592644 TCAAATTCGCAACGCGAAAG
1 TCAAATTCGCAACACGAATG
2592664 TCAAATTCGCAA
1 TCAAATTCGCAA
2592676 AGCGCGTTTA
Statistics
Matches: 141, Mismatches: 21, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
18 3 0.02
19 6 0.04
20 107 0.76
21 22 0.16
22 3 0.02
ACGTcount: A:0.41, C:0.23, G:0.15, T:0.21
Consensus pattern (20 bp):
TCAAATTCGCAACACGAATG
Found at i:2594941 original size:21 final size:21
Alignment explanation
Indices: 2594917--2594993 Score: 64
Period size: 21 Copynumber: 3.7 Consensus size: 21
2594907 GTTAGGGGAG
2594917 TTGCGTGATGAGGTTGGTGCT
1 TTGCGTGATGAGGTTGGTGCT
* * *
2594938 TTGCGTCATGAGGTCGGTACT
1 TTGCGTGATGAGGTTGGTGCT
* * *** *
2594959 TTACGTGAAGAAAATGGTGCA
1 TTGCGTGATGAGGTTGGTGCT
*
2594980 TGGCGTGATGAGGT
1 TTGCGTGATGAGGT
2594994 ACGGTCTTTA
Statistics
Matches: 38, Mismatches: 18, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.19, C:0.12, G:0.38, T:0.31
Consensus pattern (21 bp):
TTGCGTGATGAGGTTGGTGCT
Found at i:2595089 original size:21 final size:21
Alignment explanation
Indices: 2595044--2595092 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
2595034 AATGGTGCGA
* * *
2595044 TACGTGATGAGGTATCTACTT
1 TACGTGATGAGGTAGCCACTC
*
2595065 TACGTGATGAGGTAGCCGCTC
1 TACGTGATGAGGTAGCCACTC
2595086 TACGTGA
1 TACGTGA
2595093 GATTGTTTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (21 bp):
TACGTGATGAGGTAGCCACTC
Found at i:2595420 original size:42 final size:42
Alignment explanation
Indices: 2595373--2595491 Score: 143
Period size: 42 Copynumber: 2.8 Consensus size: 42
2595363 GATTCACCTG
** * *
2595373 TCATCGTTCAAGAGGTGCCTCCTATCGTTCAAGAGG-CTCCTC
1 TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGGCCT-CTC
*
2595415 TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGGCCTCTG
1 TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGGCCTCTC
**
2595457 TCATCGTTCAATG-GATCCCTCCCACCGTTCAAGAG
1 TCATCGTTCAA-GAGGCCCCTCCCACCGTTCAAGAG
2595492 CCCAATTCAC
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
42 65 0.96
43 3 0.04
ACGTcount: A:0.20, C:0.34, G:0.20, T:0.25
Consensus pattern (42 bp):
TCATCGTTCAAGAGGCCCCTCCCACCGTTCAAGAGGCCTCTC
Found at i:2595464 original size:21 final size:21
Alignment explanation
Indices: 2595373--2595467 Score: 106
Period size: 21 Copynumber: 4.5 Consensus size: 21
2595363 GATTCACCTG
2595373 TCATCGTTCAAGAGGTGCCTC-C
1 TCATCGTTCAAGA-G-GCCTCTC
2595395 T-ATCGTTCAAGAGG-CTCCTC
1 TCATCGTTCAAGAGGCCT-CTC
*
2595415 TCATCGTTCAAGAGGCCCCTC
1 TCATCGTTCAAGAGGCCTCTC
* * *
2595436 CCACCGTTCAAGAGGCCTCTG
1 TCATCGTTCAAGAGGCCTCTC
2595457 TCATCGTTCAA
1 TCATCGTTCAA
2595468 TGGATCCCTC
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
18 2 0.03
19 2 0.03
20 3 0.05
21 53 0.85
22 2 0.03
ACGTcount: A:0.20, C:0.34, G:0.20, T:0.26
Consensus pattern (21 bp):
TCATCGTTCAAGAGGCCTCTC
Found at i:2596931 original size:64 final size:65
Alignment explanation
Indices: 2596850--2596994 Score: 222
Period size: 65 Copynumber: 2.2 Consensus size: 65
2596840 AATTTTACAT
*
2596850 TAAAAGTTGATTTGTTTAA-TTGATGAGGAAATAAGAATTATTTTTT-GCTTGTTTAATTGATTT
1 TAAAAGTTGATTTGTTTAATTTGATGAGGAAATAAG-ATTATTTTTTACCTTGTTTAATTGATTT
2596913 G
65 G
* * *
2596914 TAAAAGTTGATTTGTTTAATTTGATGTGTAAATAAGATTTTTTTTTACCTTGTTTAATTGATTTG
1 TAAAAGTTGATTTGTTTAATTTGATGAGGAAATAAGATTATTTTTTACCTTGTTTAATTGATTTG
*
2596979 TAAAAGTTAATTTGTT
1 TAAAAGTTGATTTGTT
2596995 GTTTTAAATT
Statistics
Matches: 74, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
64 28 0.38
65 46 0.62
ACGTcount: A:0.30, C:0.02, G:0.17, T:0.51
Consensus pattern (65 bp):
TAAAAGTTGATTTGTTTAATTTGATGAGGAAATAAGATTATTTTTTACCTTGTTTAATTGATTTG
Found at i:2597073 original size:20 final size:20
Alignment explanation
Indices: 2597048--2597096 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
2597038 GTTGAAGGTA
*
2597048 TAAATTTGCAACGCGAAAGG
1 TAAATTCGCAACGCGAAAGG
2597068 TAAATTCGCAACGCGAAA-G
1 TAAATTCGCAACGCGAAAGG
2597087 TCAAATTCGC
1 T-AAATTCGC
2597097 GTTGCGAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 2 0.07
20 25 0.93
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.20
Consensus pattern (20 bp):
TAAATTCGCAACGCGAAAGG
Found at i:2599693 original size:24 final size:24
Alignment explanation
Indices: 2599609--2599679 Score: 133
Period size: 24 Copynumber: 3.0 Consensus size: 24
2599599 ATCATCGAAA
*
2599609 TCCGAGTATTGACCAAGATCAAAG
1 TCCGGGTATTGACCAAGATCAAAG
2599633 TCCGGGTATTGACCAAGATCAAAG
1 TCCGGGTATTGACCAAGATCAAAG
2599657 TCCGGGTATTGACCAAGATCAAA
1 TCCGGGTATTGACCAAGATCAAA
2599680 TTTCGAATAC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (24 bp):
TCCGGGTATTGACCAAGATCAAAG
Found at i:2600659 original size:20 final size:20
Alignment explanation
Indices: 2600626--2600964 Score: 161
Period size: 20 Copynumber: 17.0 Consensus size: 20
2600616 TTGCAAAATT
* *
2600626 AAATTCGTGTTGCGAATTCG
1 AAATTCGAGTTGCGAATTTG
*
2600646 AAAATCGAGTTGCGAATTTG
1 AAATTCGAGTTGCGAATTTG
2600666 AAATTC-AGTTGCGAATTTG
1 AAATTCGAGTTGCGAATTTG
*
2600685 AAATTC-AGTTGCAAATTTG
1 AAATTCGAGTTGCGAATTTG
*
2600704 AAATTCAGTGTTGCGAATTTG
1 AAATTC-GAGTTGCGAATTTG
* *
2600725 -ACTATCGCGTTGCGAATTTG
1 AAAT-TCGAGTTGCGAATTTG
* *
2600745 -ACTTCTGTGTTGCGAATTTG
1 AAATTC-GAGTTGCGAATTTG
* * *
2600765 -ACTTCTGTGTTGCG-ATTTAC
1 AAATTC-GAGTTGCGAATTT-G
2600785 AAATTC-ACGTTGCG-ATTT-
1 AAATTCGA-GTTGCGAATTTG
*
2600803 ATAGATTCGCGTTGCGAATTTG
1 A-A-ATTCGAGTTGCGAATTTG
* **
2600825 -ACTTTTATGTTGCGAATTTG
1 AAATTCGA-GTTGCGAATTTG
* *
2600845 -ACTATCGCGTTGCGAATTTG
1 AAAT-TCGAGTTGCGAATTTG
* * * *
2600865 -ACTTATGTGTTGCG-ATTTAC
1 AAATT-CGAGTTGCGAATTT-G
*
2600885 AAATTCGTGTTGCG-ATTT-
1 AAATTCGAGTTGCGAATTTG
*
2600903 ACATATTCGCGTTGCGAATTTGG
1 A-A-ATTCGAGTTGCGAATTT-G
* * *
2600926 AAACT-GGGTTGCGAAATTG
1 AAATTCGAGTTGCGAATTTG
* * *
2600945 GAGTTCGCGTTGCGAATTTG
1 AAATTCGAGTTGCGAATTTG
2600965 TTGGTCATTT
Statistics
Matches: 261, Mismatches: 35, Indels: 46
0.76 0.10 0.13
Matches are distributed among these distances:
18 2 0.01
19 55 0.21
20 171 0.66
21 31 0.12
22 1 0.00
23 1 0.00
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (20 bp):
AAATTCGAGTTGCGAATTTG
Found at i:2600675 original size:19 final size:19
Alignment explanation
Indices: 2600634--2600725 Score: 130
Period size: 19 Copynumber: 4.7 Consensus size: 19
2600624 TTAAATTCGT
* *
2600634 GTTGCGAATTCGAAAATCGA
1 GTTGCGAATTTGAAATTC-A
2600654 GTTGCGAATTTGAAATTCA
1 GTTGCGAATTTGAAATTCA
2600673 GTTGCGAATTTGAAATTCA
1 GTTGCGAATTTGAAATTCA
*
2600692 GTTGCAAATTTGAAATTCA
1 GTTGCGAATTTGAAATTCA
2600711 GTGTTGCGAATTTGA
1 --GTTGCGAATTTGA
2600726 CTATCGCGTT
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
19 38 0.58
20 16 0.24
21 12 0.18
ACGTcount: A:0.32, C:0.11, G:0.23, T:0.35
Consensus pattern (19 bp):
GTTGCGAATTTGAAATTCA
Found at i:2600702 original size:38 final size:39
Alignment explanation
Indices: 2600615--2600745 Score: 140
Period size: 39 Copynumber: 3.3 Consensus size: 39
2600605 ACTAAAACCT
* * *
2600615 GTTGCAAAATT-AAATTCGTGTTGCGAATTCGAAAATCGA
1 GTTGCAAATTTGAAATTC-AGTTGCGAATTTGAAAATCGA
* *
2600654 GTTGCGAATTTGAAATTCAGTTGCGAATTTGAAATTC-A
1 GTTGCAAATTTGAAATTCAGTTGCGAATTTGAAAATCGA
** *
2600692 GTTGCAAATTTGAAATTCAGTGTTGCGAATTTGACTATCGC
1 GTTGCAAATTTGAAATTCA--GTTGCGAATTTGAAAATCGA
*
2600733 GTTGCGAATTTGA
1 GTTGCAAATTTGA
2600746 CTTCTGTGTT
Statistics
Matches: 77, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
38 19 0.25
39 25 0.32
40 21 0.27
41 12 0.16
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (39 bp):
GTTGCAAATTTGAAATTCAGTTGCGAATTTGAAAATCGA
Found at i:2600755 original size:40 final size:40
Alignment explanation
Indices: 2600632--2600879 Score: 183
Period size: 40 Copynumber: 6.2 Consensus size: 40
2600622 AATTAAATTC
* ** * *
2600632 GTGTTGCGAATTCGAAAATCGAGTTGCGAATTTGAAATTC-
1 GTGTTGCGAATTTGACTATCGCGTTGCGAATTTG-ACTTCT
* * * * * *
2600672 -AGTTGCGAATTTGA-AATTC-AGTTGCAAATTTGAAATTCA
1 GTGTTGCGAATTTGACTA-TCGCGTTGCGAATTTG-ACTTCT
2600711 GTGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCT
1 GTGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCT
*
2600751 GTGTTGCGAATTTGACT-TCTGTGTTGCG-ATTT-ACAAATTC-
1 GTGTTGCGAATTTGACTATC-GCGTTGCGAATTTGAC---TTCT
** * *
2600791 ACGTTGCGATTTATAGA-T-TCGCGTTGCGAATTTGACTTTT
1 GTGTTGCGAATT-T-GACTATCGCGTTGCGAATTTGACTTCT
* *
2600831 ATGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTAT
1 GTGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCT
2600871 GTGTTGCGA
1 GTGTTGCGA
2600880 TTTACAAATT
Statistics
Matches: 173, Mismatches: 19, Indels: 32
0.77 0.08 0.14
Matches are distributed among these distances:
38 24 0.14
39 24 0.14
40 98 0.57
41 23 0.13
42 4 0.02
ACGTcount: A:0.24, C:0.14, G:0.23, T:0.39
Consensus pattern (40 bp):
GTGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTCT
Found at i:2600821 original size:100 final size:100
Alignment explanation
Indices: 2600713--2600924 Score: 318
Period size: 100 Copynumber: 2.1 Consensus size: 100
2600703 GAAATTCAGT
* * *
2600713 GTTGCGAATTTGACTATCGCGTTGCGAATTTGACT-TCTGTGTTGCGAATTTGACTTCTGTGTTG
1 GTTGCGAATTTGACTATCACGTTGCGAATTTGACTATC-GCGTTGCGAATTTGACTTATGTGTTG
*
2600777 CGATTTACAAATTCACGTTGCGATTTATAGATTCGC
65 CGATTTACAAATTCACGTTGCGATTTACAGATTCGC
* * *
2600813 GTTGCGAATTTGACTTTTATGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTATGTGTTGC
1 GTTGCGAATTTGACTATCACGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTATGTGTTGC
** *
2600878 GATTTACAAATTCGTGTTGCGATTTACATATTCGC
66 GATTTACAAATTCACGTTGCGATTTACAGATTCGC
2600913 GTTGCGAATTTG
1 GTTGCGAATTTG
2600925 GAAACTGGGT
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
100 99 0.98
101 2 0.02
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (100 bp):
GTTGCGAATTTGACTATCACGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTATGTGTTGC
GATTTACAAATTCACGTTGCGATTTACAGATTCGC
Found at i:2600877 original size:80 final size:78
Alignment explanation
Indices: 2600729--2600899 Score: 202
Period size: 80 Copynumber: 2.1 Consensus size: 78
2600719 AATTTGACTA
* *
2600729 TCGCGTTGCGAATTTGACTTCTGTGTTGCGAATTTGACTTCTGTGTTGCGATTTACAAATTCACG
1 TCGCGTTGCGAATTTGACTTCTATGTTGCGAATTTGACTTCTGCGTTGCGATTTACAAATT--CG
* *
2600794 TTGCGATTTATAGAT
64 TTGCGATTTACAAAT
* **
2600809 TCGCGTTGCGAATTTGACTTTTATGTTGCGAATTTGACTATC-GCGTTGCGAATTTGACTTATGT
1 TCGCGTTGCGAATTTGACTTCTATGTTGCGAATTTGACT-TCTGCGTTGCG-ATTT-ACAAAT-T
2600873 -GTTGCGATTTACAAAT
62 CGTTGCGATTTACAAAT
*
2600889 TCGTGTTGCGA
1 TCGCGTTGCGA
2600900 TTTACATATT
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
80 68 0.86
81 6 0.08
82 4 0.05
83 1 0.01
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (78 bp):
TCGCGTTGCGAATTTGACTTCTATGTTGCGAATTTGACTTCTGCGTTGCGATTTACAAATTCGTT
GCGATTTACAAAT
Found at i:2600937 original size:100 final size:99
Alignment explanation
Indices: 2600713--2600964 Score: 310
Period size: 100 Copynumber: 2.5 Consensus size: 99
2600703 GAAATTCAGT
* * * *
2600713 GTTGCGAATTTGACTA-TCGCGTTGCGAATTTGACTTCTGTGTTGCGAATTTGACTTCTGTGTTG
1 GTTGCGAATTTGACAACTAG-GTTGCGAATTTGACTTC-GCGTTGCGAATTTGACTTATGTGTTG
*
2600777 CGATTTACAAATTCACGTTGCGATTTATAGATTCGC
64 CGATTTACAAATTCACGTTGCGATTTACAGATTCGC
*** *
2600813 GTTGCGAATTTGACTTTTATGTTGCGAATTTGACTATCGCGTTGCGAATTTGACTTATGTGTTGC
1 GTTGCGAATTTGACAACTAGGTTGCGAATTTGACT-TCGCGTTGCGAATTTGACTTATGTGTTGC
** *
2600878 GATTTACAAATTCGTGTTGCGATTTACATATTCGC
65 GATTTACAAATTCACGTTGCGATTTACAGATTCGC
* * *
2600913 GTTGCGAATTTGGA-AACTGGGTTGCGAAATTGGAGTTCGCGTTGCGAATTTG
1 GTTGCGAATTT-GACAACTAGGTTGCG-AATTTGACTTCGCGTTGCGAATTTG
2600965 TTGGTCATTT
Statistics
Matches: 132, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
100 120 0.91
101 12 0.09
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.39
Consensus pattern (99 bp):
GTTGCGAATTTGACAACTAGGTTGCGAATTTGACTTCGCGTTGCGAATTTGACTTATGTGTTGCG
ATTTACAAATTCACGTTGCGATTTACAGATTCGC
Found at i:2602869 original size:26 final size:26
Alignment explanation
Indices: 2602833--2602890 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
2602823 AAAGGTGTTG
2602833 GACAAAACCTTTACCGCTATTCCGAT
1 GACAAAACCTTTACCGCTATTCCGAT
2602859 GACAAAACCTTTACCGCTATTCCGAT
1 GACAAAACCTTTACCGCTATTCCGAT
2602885 GACAAA
1 GACAAA
2602891 CCGCTATTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.34, C:0.29, G:0.12, T:0.24
Consensus pattern (26 bp):
GACAAAACCTTTACCGCTATTCCGAT
Found at i:2604836 original size:18 final size:19
Alignment explanation
Indices: 2604813--2604855 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
2604803 CAGTAATCCT
2604813 ATTCCC-TGGTAATCTTAC
1 ATTCCCATGGTAATCTTAC
2604831 ATTCCCATTGGTAATCTTAC
1 ATTCCCA-TGGTAATCTTAC
2604851 ATTCC
1 ATTCC
2604856 GTGAACCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 6 0.26
20 17 0.74
ACGTcount: A:0.23, C:0.28, G:0.09, T:0.40
Consensus pattern (19 bp):
ATTCCCATGGTAATCTTAC
Found at i:2610736 original size:14 final size:13
Alignment explanation
Indices: 2610686--2610716 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
2610676 ATATATTAAT
2610686 ATTTTCAAAAACC
1 ATTTTCAAAAACC
2610699 ATTTTCAAAAACC
1 ATTTTCAAAAACC
2610712 ATTTT
1 ATTTT
2610717 TTAAAAAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.19, G:0.00, T:0.39
Consensus pattern (13 bp):
ATTTTCAAAAACC
Found at i:2610797 original size:30 final size:31
Alignment explanation
Indices: 2610763--2610821 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
2610753 ATAATATATG
2610763 TTTTCAAAACTA-TTTTAAAAACTATATACA
1 TTTTCAAAACTATTTTTAAAAACTATATACA
* *
2610793 TTTTCAAAATTATTTTTTAAAACTATATA
1 TTTTCAAAACTATTTTTAAAAACTATATA
2610822 TTATATGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (31 bp):
TTTTCAAAACTATTTTTAAAAACTATATACA
Found at i:2610863 original size:66 final size:63
Alignment explanation
Indices: 2610745--2610896 Score: 166
Period size: 66 Copynumber: 2.3 Consensus size: 63
2610735 AACCGATTTA
* **
2610745 AAAACTATATAATATATGTTTTCAAAACTATTTTAAAAACTATATACATTTTCAAAATTATTTTT
1 AAAACTATATATTATATGTTTTCAAAACTATTTTAAAAACTATATA-ATTTTCAAAA-T-GGTTT
2610810 T
63 T
* *
2610811 AAAACTATATATTATATGTTTTCAAAA-T-TTTCTACTATATACTATAT-GTTTTCAAAATGGTT
1 AAAACTATATATTATATGTTTTCAAAACTATTT-TA--A-AAACTATATAATTTTCAAAATGGTT
2610873 TT
62 TT
*
2610875 AAAACTATATATTATACGTTTT
1 AAAACTATATATTATATGTTTT
2610897 TTTAAAAGTA
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
64 28 0.37
65 4 0.05
66 35 0.46
67 1 0.01
68 8 0.11
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (63 bp):
AAAACTATATATTATATGTTTTCAAAACTATTTTAAAAACTATATAATTTTCAAAATGGTTTT
Found at i:2616326 original size:23 final size:23
Alignment explanation
Indices: 2616300--2616360 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
2616290 CAATCTTATA
2616300 TGGCACTAT-AGTGCAATTCTACG
1 TGGCACT-TCAGTGCAATTCTACG
*
2616323 TGGCACTTCGGTGCAATTCTACG
1 TGGCACTTCAGTGCAATTCTACG
*
2616346 TGGCACTTCGGTGCA
1 TGGCACTTCAGTGCA
2616361 TTTATATTAG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
22 1 0.03
23 35 0.97
ACGTcount: A:0.20, C:0.25, G:0.26, T:0.30
Consensus pattern (23 bp):
TGGCACTTCAGTGCAATTCTACG
Found at i:2618079 original size:4 final size:4
Alignment explanation
Indices: 2618070--2618147 Score: 51
Period size: 4 Copynumber: 20.5 Consensus size: 4
2618060 ATTAAACTTT
* *
2618070 AATA AATA AATA AATA AAT- AAT- AAT- AAT- AATA ATATA ACTT AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA A-ATA AATA AATA
* * *
2618115 TATA AATA ATAAA AAGA AAT- AATA AA-A AATA AA
1 AATA AATA A-ATA AATA AATA AATA AATA AATA AA
2618148 AGAAAAAATT
Statistics
Matches: 60, Mismatches: 9, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
3 18 0.30
4 35 0.58
5 7 0.12
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.27
Consensus pattern (4 bp):
AATA
Found at i:2618136 original size:13 final size:13
Alignment explanation
Indices: 2618118--2618142 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2618108 CTTAATATAT
2618118 AAATAATAAAAAG
1 AAATAATAAAAAG
2618131 AAATAATAAAAA
1 AAATAATAAAAA
2618143 ATAAAAGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
AAATAATAAAAAG
Found at i:2618150 original size:19 final size:21
Alignment explanation
Indices: 2618111--2618152 Score: 61
Period size: 19 Copynumber: 2.1 Consensus size: 21
2618101 AATATAACTT
*
2618111 AATATATAAATAATAAAAAGA
1 AATATATAAAAAATAAAAAGA
2618132 AATA-ATAAAAAAT-AAAAGA
1 AATATATAAAAAATAAAAAGA
2618151 AA
1 AA
2618153 AAATTATCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 8 0.40
21 4 0.20
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (21 bp):
AATATATAAAAAATAAAAAGA
Found at i:2618288 original size:36 final size:35
Alignment explanation
Indices: 2618241--2618349 Score: 148
Period size: 34 Copynumber: 3.1 Consensus size: 35
2618231 TTAAAAACTA
*
2618241 TATAAGTTTTCAAAATTATTTTTTAAAACTATATAT
1 TATATGTTTTCAAAATT-TTTTTTAAAACTATATAT
* *
2618277 TATATGTTTTCAAAATTTTCTTTAAAACTATATAC
1 TATATGTTTTCAAAATTTTTTTTAAAACTATATAT
** *
2618312 TATATG-TTTCAAAATGGTTTTAAAAACTATATAT
1 TATATGTTTTCAAAATTTTTTTTAAAACTATATAT
2618346 TATA
1 TATA
2618350 CATTTTTTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
34 27 0.42
35 22 0.34
36 16 0.25
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.48
Consensus pattern (35 bp):
TATATGTTTTCAAAATTTTTTTTAAAACTATATAT
Found at i:2634479 original size:4 final size:4
Alignment explanation
Indices: 2634470--2634500 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
2634460 ACTGTTTAAC
2634470 TATT TATT TATT TATT TATT TATT TATT TAT
1 TATT TATT TATT TATT TATT TATT TATT TAT
2634501 ACATGGCATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:2635898 original size:19 final size:20
Alignment explanation
Indices: 2635860--2635912 Score: 92
Period size: 19 Copynumber: 2.8 Consensus size: 20
2635850 AAATTTTGAA
2635860 GGTGCATCGATGCATTAAGG
1 GGTGCATCGATGCATTAAGG
2635880 GGTGCATCGATGC-TTAAGG
1 GGTGCATCGATGCATTAAGG
2635899 GGTGCATC-ATGCAT
1 GGTGCATCGATGCAT
2635913 GAATATTTCG
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
18 4 0.12
19 15 0.47
20 13 0.41
ACGTcount: A:0.23, C:0.17, G:0.34, T:0.26
Consensus pattern (20 bp):
GGTGCATCGATGCATTAAGG
Found at i:2636313 original size:17 final size:16
Alignment explanation
Indices: 2636284--2636315 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
2636274 ATGTATGTTA
2636284 TTACATGTTACATGAT
1 TTACATGTTACATGAT
2636300 TTACATGCTTACATGA
1 TTACATG-TTACATGA
2636316 AAATGCAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (16 bp):
TTACATGTTACATGAT
Found at i:2636635 original size:31 final size:31
Alignment explanation
Indices: 2636582--2636691 Score: 175
Period size: 31 Copynumber: 3.5 Consensus size: 31
2636572 AGGGTCGAGG
*
2636582 GTTTACCTATGTTTCTTCGGGACATATGGACT
1 GTTTACCTATG-TTCTTCGGGACATATGGATT
*
2636614 GTTTACCTATGTTATTCGGGACATATGGATT
1 GTTTACCTATGTTCTTCGGGACATATGGATT
2636645 GTTTACCTATGTTCTTCGGGACATATGGATT
1 GTTTACCTATGTTCTTCGGGACATATGGATT
* *
2636676 GATTACCTAGGTTCTT
1 GTTTACCTATGTTCTT
2636692 TGGAATCTAT
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
31 62 0.85
32 11 0.15
ACGTcount: A:0.20, C:0.16, G:0.22, T:0.42
Consensus pattern (31 bp):
GTTTACCTATGTTCTTCGGGACATATGGATT
Found at i:2636703 original size:31 final size:31
Alignment explanation
Indices: 2636584--2636706 Score: 122
Period size: 31 Copynumber: 3.9 Consensus size: 31
2636574 GGTCGAGGGT
* * * *
2636584 TTACCTATGTTTCTTCGGGACATATGGACTGT
1 TTACCTA-GGTTCTTCGGAACATATGGATTGA
* * * *
2636616 TTACCTATGTTATTCGGGACATATGGATTGT
1 TTACCTAGGTTCTTCGGAACATATGGATTGA
* *
2636647 TTACCTATGTTCTTCGGGACATATGGATTGA
1 TTACCTAGGTTCTTCGGAACATATGGATTGA
*
2636678 TTACCTAGGTTCTTTGGAATC-TATGGATT
1 TTACCTAGGTTCTTCGGAA-CATATGGATT
2636707 AGTTCTTCGG
Statistics
Matches: 81, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
31 73 0.90
32 8 0.10
ACGTcount: A:0.21, C:0.15, G:0.22, T:0.41
Consensus pattern (31 bp):
TTACCTAGGTTCTTCGGAACATATGGATTGA
Found at i:2636703 original size:62 final size:63
Alignment explanation
Indices: 2636582--2636706 Score: 173
Period size: 62 Copynumber: 2.0 Consensus size: 63
2636572 AGGGTCGAGG
* * *
2636582 GTTTACCTATGTTTCTTCGGGACATATGGACTGTTTACCTATGTTATTCGGGACATATGGATT
1 GTTTACCTATGTTTCTTCGGGACATATGGACTGATTACCTAGGTTATTCGGAACATATGGATT
* * *
2636645 GTTTACCTATG-TTCTTCGGGACATATGGATTGATTACCTAGGTTCTTTGGAATC-TATGGATT
1 GTTTACCTATGTTTCTTCGGGACATATGGACTGATTACCTAGGTTATTCGGAA-CATATGGATT
2636707 AGTTCTTCGG
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
62 43 0.78
63 12 0.22
ACGTcount: A:0.21, C:0.15, G:0.22, T:0.42
Consensus pattern (63 bp):
GTTTACCTATGTTTCTTCGGGACATATGGACTGATTACCTAGGTTATTCGGAACATATGGATT
Found at i:2642926 original size:21 final size:21
Alignment explanation
Indices: 2642900--2642939 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
2642890 CCCCCTTTGA
*
2642900 AGGGGAACCGATTCCCCCCAC
1 AGGGGAACCGATACCCCCCAC
*
2642921 AGGGGAATCGATACCCCCC
1 AGGGGAACCGATACCCCCC
2642940 TGGGGTTCTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.40, G:0.25, T:0.10
Consensus pattern (21 bp):
AGGGGAACCGATACCCCCCAC
Found at i:2648075 original size:1 final size:1
Alignment explanation
Indices: 2648071--2648130 Score: 57
Period size: 1 Copynumber: 60.0 Consensus size: 1
2648061 TTTTTGGCTC
** *** * *
2648071 TTTTTTTTTGCTTTTTTTTTTTGCCTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2648131 AAAAATAGCA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 49 1.00
ACGTcount: A:0.00, C:0.05, G:0.07, T:0.88
Consensus pattern (1 bp):
T
Found at i:2648099 original size:37 final size:38
Alignment explanation
Indices: 2648052--2648130 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 38
2648042 TTTTTTTGAA
*
2648052 TTTTGGCTTTTT-TTGGCTCTTTTTTTTTGCTTTTTTT
1 TTTTGCCTTTTTGTTGGCTCTTTTTTTTTGCTTTTTTT
*** * *
2648089 TTTTGCCTTTTTGTTTTTTTTTTTTTTTTGTTTTTTTT
1 TTTTGCCTTTTTGTTGGCTCTTTTTTTTTGCTTTTTTT
2648127 TTTT
1 TTTT
2648131 AAAAATAGCA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
37 11 0.31
38 24 0.69
ACGTcount: A:0.00, C:0.08, G:0.10, T:0.82
Consensus pattern (38 bp):
TTTTGCCTTTTTGTTGGCTCTTTTTTTTTGCTTTTTTT
Found at i:2648130 original size:13 final size:13
Alignment explanation
Indices: 2648059--2648129 Score: 85
Period size: 13 Copynumber: 5.6 Consensus size: 13
2648049 GAATTTTGGC
* *
2648059 TTTTTTTGGCTCT
1 TTTTTTTTGCTTT
2648072 TTTTTTTTGCTTT
1 TTTTTTTTGCTTT
2648085 TTTTTTTTGCCTTT
1 TTTTTTTTG-CTTT
*
2648099 TTGTTTTT--TTT
1 TTTTTTTTGCTTT
2648110 TTTTTTTTG-TTT
1 TTTTTTTTGCTTT
2648122 TTTTTTTT
1 TTTTTTTT
2648130 TAAAAATAGC
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
11 10 0.19
12 11 0.21
13 20 0.38
14 11 0.21
ACGTcount: A:0.00, C:0.07, G:0.08, T:0.85
Consensus pattern (13 bp):
TTTTTTTTGCTTT
Done.