Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007999.1 Hibiscus syriacus cultivar Beakdansim tig00110450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11700749
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 27 of 50
Found at i:6638277 original size:32 final size:31
Alignment explanation
Indices: 6638241--6638344 Score: 108
Period size: 32 Copynumber: 3.3 Consensus size: 31
6638231 TAACCCATAT
6638241 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
6638273 TTTAAAATAAATCAATCCATATTTTAAAATAAATTA
1 TTTAAAATAAATCAATCCATA---T--AATAAATTA
*
6638309 TTTTAAAATAAAT-AA-CC-T-TATTAAATTA
1 -TTTAAAATAAATCAATCCATATAATAAATTA
6638337 TTTAAAAT
1 TTTAAAAT
6638345 TATTTTAATA
Statistics
Matches: 65, Mismatches: 2, Indels: 15
0.79 0.02 0.18
Matches are distributed among these distances:
27 8 0.12
28 8 0.12
30 1 0.02
32 21 0.32
34 2 0.03
35 2 0.03
36 11 0.17
37 12 0.18
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (31 bp):
TTTAAAATAAATCAATCCATATAATAAATTA
Found at i:6638311 original size:36 final size:33
Alignment explanation
Indices: 6638238--6638321 Score: 116
Period size: 32 Copynumber: 2.5 Consensus size: 33
6638228 AAATAACCCA
6638238 TATTTTAAAATAAATCAATCCATACTAATAAAT
1 TATTTTAAAATAAATCAATCCATACTAATAAAT
*
6638271 TA-TTTAAAATAAATCAATCCATATTTTAAAATAAAT
1 TATTTTAAAATAAATCAATCCATA--CT--AATAAAT
6638307 TATTTTAAAATAAAT
1 TATTTTAAAATAAAT
6638322 AACCTTATTA
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
32 21 0.47
33 2 0.04
34 1 0.02
36 9 0.20
37 12 0.27
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.39
Consensus pattern (33 bp):
TATTTTAAAATAAATCAATCCATACTAATAAAT
Found at i:6638312 original size:15 final size:15
Alignment explanation
Indices: 6638292--6638321 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
6638282 AATCAATCCA
6638292 TATTTTAAAATAAAT
1 TATTTTAAAATAAAT
6638307 TATTTTAAAATAAAT
1 TATTTTAAAATAAAT
6638322 AACCTTATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TATTTTAAAATAAAT
Found at i:6638334 original size:143 final size:143
Alignment explanation
Indices: 6638050--6638344 Score: 429
Period size: 143 Copynumber: 2.1 Consensus size: 143
6638040 CAATCCATAT
* * *
6638050 TTTAAAATAAATCAATTCATACAACTACAATAATAAATCAATCCATATTTTAAAATAAATTAATC
1 TTTAAAATAAATCAATCCATACAACTACAATAATAAATCAACCCATATTTTAAAATAAATCAATC
*
6638115 CATACAAATAAATTATTTAAAATAAACCAATTCATACTAATAAATTATTTAAAATAAATCAATCC
66 CATACAAATAAATTATTTAAAATAAACCAATCCATACTAATAAATTATTTAAAATAAATCAATCC
6638180 ATACTAATAAATTA
131 ATA-TAATAAATTA
6638194 TTTAAAATAAATCAATCCATACAACTACAATAATAAAT-AACCCATATTTTAAAATAAATCAATC
1 TTTAAAATAAATCAATCCATACAACTACAATAATAAATCAACCCATATTTTAAAATAAATCAATC
* * *
6638258 CATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATTATTTTAAAATAAAT-
66 CATACAAATAAATTATTTAAAATAAACCAATCCATA--CT--AATAAATTA-TTTAAAATAAATC
*
6638322 AA-CC-T-TATTAAATTA
126 AATCCATATAATAAATTA
6638337 TTTAAAAT
1 TTTAAAAT
6638345 TATTTTAATA
Statistics
Matches: 138, Mismatches: 8, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
143 74 0.54
144 37 0.27
145 2 0.01
146 2 0.01
147 11 0.08
148 12 0.09
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.35
Consensus pattern (143 bp):
TTTAAAATAAATCAATCCATACAACTACAATAATAAATCAACCCATATTTTAAAATAAATCAATC
CATACAAATAAATTATTTAAAATAAACCAATCCATACTAATAAATTATTTAAAATAAATCAATCC
ATATAATAAATTA
Found at i:6641773 original size:20 final size:20
Alignment explanation
Indices: 6641750--6641801 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
6641740 ATATGTAAAC
*
6641750 CGCAATACGATTCTGACTAT
1 CGCAATGCGATTCTGACTAT
* *
6641770 CGCAACGCGATGCTGACTAT
1 CGCAATGCGATTCTGACTAT
6641790 CGCAATGCGATT
1 CGCAATGCGATT
6641802 TTCAAATCGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (20 bp):
CGCAATGCGATTCTGACTAT
Found at i:6641992 original size:22 final size:22
Alignment explanation
Indices: 6641967--6642023 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
6641957 CACTCTCTAA
*
6641967 GACGACATCCGTCCCCATCTCC
1 GACGAAATCCGTCCCCATCTCC
*
6641989 GACGAAATCAGTCCCCATCTCC
1 GACGAAATCCGTCCCCATCTCC
*
6642011 GGCGAAATCCGTC
1 GACGAAATCCGTC
6642024 TATCTCCATC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.23, C:0.42, G:0.18, T:0.18
Consensus pattern (22 bp):
GACGAAATCCGTCCCCATCTCC
Found at i:6642445 original size:20 final size:20
Alignment explanation
Indices: 6642407--6642472 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
6642397 AATCACAATT
* *
6642407 CGATTTT-AGTTTCGCGTTG
1 CGATTTTCATTTTCGTGTTG
*
6642426 TGATTTTCATTTTCGTGTTG
1 CGATTTTCATTTTCGTGTTG
6642446 CGATTTTCATTTTCGTGTTG
1 CGATTTTCATTTTCGTGTTG
6642466 CGATTTT
1 CGATTTT
6642473 AAGTTTCAGA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
19 6 0.14
20 36 0.86
ACGTcount: A:0.11, C:0.14, G:0.21, T:0.55
Consensus pattern (20 bp):
CGATTTTCATTTTCGTGTTG
Found at i:6644231 original size:18 final size:18
Alignment explanation
Indices: 6644204--6644253 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
6644194 TTTACTCGTA
*
6644204 ATTTCTCTTAGATTAACC
1 ATTTCACTTAGATTAACC
6644222 ATTTCACTTAGATTAACC
1 ATTTCACTTAGATTAACC
6644240 ATTTCACTTAGATT
1 ATTTCACTTAGATT
6644254 GCTTAGTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.30, C:0.20, G:0.06, T:0.44
Consensus pattern (18 bp):
ATTTCACTTAGATTAACC
Found at i:6644426 original size:20 final size:20
Alignment explanation
Indices: 6644401--6644448 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
6644391 TAGTTTACTT
*
6644401 TCGCAACGCGAAAATGGCTA
1 TCGCAACGCGAAAATGACTA
* **
6644421 TCGCAACGTGAATTTGACTA
1 TCGCAACGCGAAAATGACTA
6644441 TCGCAACG
1 TCGCAACG
6644449 AAAGAATCGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.31, C:0.25, G:0.23, T:0.21
Consensus pattern (20 bp):
TCGCAACGCGAAAATGACTA
Found at i:6644516 original size:20 final size:20
Alignment explanation
Indices: 6644491--6644566 Score: 125
Period size: 20 Copynumber: 3.8 Consensus size: 20
6644481 GCGATTCTCT
**
6644491 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCATTTTCG
6644511 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
6644531 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCATTTTCG
*
6644551 TGTTGCGATAGTCATT
1 CGTTGCGATAGTCATT
6644567 CGTGTTGGGA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 53 1.00
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.38
Consensus pattern (20 bp):
CGTTGCGATAGTCATTTTCG
Found at i:6645158 original size:21 final size:20
Alignment explanation
Indices: 6645067--6645171 Score: 68
Period size: 21 Copynumber: 5.0 Consensus size: 20
6645057 GACTCACCTG
6645067 TCATCGTTCAAGAGG-CCTCC
1 TCATCGTTCAAGAGGCCCT-C
* *
6645087 CCTATCGTTCAAGAGGCCCATA
1 TC-ATCGTTCAAGAGGCCC-TC
** *
6645109 TCATCCCTCAAGAGTCCCCTC
1 TCATCGTTCAAGAG-GCCCTC
* * *
6645130 CCACCGTTCAAGAGGCCACTG
1 TCATCGTTCAAGAGGCC-CTC
*
6645151 TCATCGTTGAAGAGGTCCCTC
1 TCATCGTTCAAGAGG-CCCTC
6645172 CCAACATTCT
Statistics
Matches: 62, Mismatches: 17, Indels: 11
0.69 0.19 0.12
Matches are distributed among these distances:
20 3 0.05
21 50 0.81
22 8 0.13
23 1 0.02
ACGTcount: A:0.22, C:0.36, G:0.19, T:0.23
Consensus pattern (20 bp):
TCATCGTTCAAGAGGCCCTC
Found at i:6645164 original size:42 final size:41
Alignment explanation
Indices: 6645063--6645174 Score: 111
Period size: 42 Copynumber: 2.7 Consensus size: 41
6645053 GCCCGACTCA
* * *
6645063 CCTGTCATCGTTCAAGAGGCCTCC-CCTATCGTTCAAGAGGC
1 CCTGTCATCGTTCAAGAGTCC-CCTCCCACCGTTCAAGAGGC
* **
6645104 CCATATCATCCCTCAAGAGTCCCCTCCCACCGTTCAAGAGGC
1 CC-TGTCATCGTTCAAGAGTCCCCTCCCACCGTTCAAGAGGC
*
6645146 CACTGTCATCGTTGAAGAGGT-CCCTCCCA
1 C-CTGTCATCGTTCAAGA-GTCCCCTCCCA
6645175 ACATTCTAGA
Statistics
Matches: 57, Mismatches: 10, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
41 4 0.07
42 50 0.88
43 3 0.05
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.22
Consensus pattern (41 bp):
CCTGTCATCGTTCAAGAGTCCCCTCCCACCGTTCAAGAGGC
Found at i:6646608 original size:14 final size:14
Alignment explanation
Indices: 6646571--6646632 Score: 61
Period size: 14 Copynumber: 4.3 Consensus size: 14
6646561 TTGCTTGTTT
*
6646571 AATTGATTTATAAA
1 AATTGATTTGTAAA
6646585 AATTGATTTGTAAA
1 AATTGATTTGTAAA
* *
6646599 AGTTGATTTGTTTAA
1 AATTGATTTG-TAAA
* *
6646614 TATTGATGTGTAAA
1 AATTGATTTGTAAA
6646628 TAATT
1 -AATT
6646633 CTTATTTGTG
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
14 25 0.66
15 13 0.34
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.47
Consensus pattern (14 bp):
AATTGATTTGTAAA
Found at i:6646756 original size:20 final size:20
Alignment explanation
Indices: 6646731--6646784 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
6646721 AGGTACACTT
*
6646731 TCGCAACGCTAAA-CTCAAAA
1 TCGCAACGCGAAAGC-CAAAA
**
6646751 TCGCAATACGAAAGCCAAAA
1 TCGCAACGCGAAAGCCAAAA
6646771 TCGCAACGCGAAAG
1 TCGCAACGCGAAAG
6646785 TCAATTCGCG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
20 27 0.96
21 1 0.04
ACGTcount: A:0.44, C:0.28, G:0.17, T:0.11
Consensus pattern (20 bp):
TCGCAACGCGAAAGCCAAAA
Found at i:6646849 original size:34 final size:34
Alignment explanation
Indices: 6646801--6646868 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
6646791 CGCGTTTGAG
* *
6646801 TTTCGCGTTGCGATAGTCTAATACGCTTTGCGAT
1 TTTCGCGTTGCGATAGTCAAATACGCGTTGCGAT
* *
6646835 TTTCTCGTTGCGATAGTCAAATACTCGTTGCGAT
1 TTTCGCGTTGCGATAGTCAAATACGCGTTGCGAT
6646869 AATCAAATCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.19, C:0.21, G:0.22, T:0.38
Consensus pattern (34 bp):
TTTCGCGTTGCGATAGTCAAATACGCGTTGCGAT
Found at i:6646863 original size:20 final size:20
Alignment explanation
Indices: 6646836--6647072 Score: 180
Period size: 20 Copynumber: 12.4 Consensus size: 20
6646826 CTTTGCGATT
6646836 TTCTCGTTGCGATAGTCAAA
1 TTCTCGTTGCGATAGTCAAA
* *
6646856 TACTCGTTGCGATAATCAAA
1 TTCTCGTTGCGATAGTCAAA
* * *
6646876 TCCGCGTCGCGATAGTCAAA
1 TTCTCGTTGCGATAGTCAAA
6646896 TTCAT-GTTGCGATAGTCAAA
1 TTC-TCGTTGCGATAGTCAAA
* *
6646916 TTCACGTTGTG--AGT----
1 TTCTCGTTGCGATAGTCAAA
*
6646930 TTCTCGTTGCAATAGTCAAA
1 TTCTCGTTGCGATAGTCAAA
* * *
6646950 TACCCGTTGCGATAATCAAA
1 TTCTCGTTGCGATAGTCAAA
* *
6646970 TTCACGTTACGATAGTCAAA
1 TTCTCGTTGCGATAGTCAAA
* *
6646990 TTCGCGTTGCGATAGACAAA
1 TTCTCGTTGCGATAGTCAAA
*
6647010 TTCGCGTTGCGAT--T----
1 TTCTCGTTGCGATAGTCAAA
*
6647024 TT-TGCGTTGCGATAGTCATA
1 TTCT-CGTTGCGATAGTCAAA
6647044 TTCGT-GTTGCGATAGTCAAA
1 TTC-TCGTTGCGATAGTCAAA
*
6647064 TTCGCGTTG
1 TTCTCGTTG
6647073 TGATTTTTGA
Statistics
Matches: 170, Mismatches: 29, Indels: 36
0.72 0.12 0.15
Matches are distributed among these distances:
14 19 0.11
16 4 0.02
18 3 0.02
20 143 0.84
22 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.33
Consensus pattern (20 bp):
TTCTCGTTGCGATAGTCAAA
Found at i:6646936 original size:74 final size:73
Alignment explanation
Indices: 6646858--6647118 Score: 230
Period size: 74 Copynumber: 3.5 Consensus size: 73
6646848 TAGTCAAATA
* *
6646858 CTCGTTGCGATAATCAAATCCGCGTCGCGATAGTCAAATTCATGTTGCGATAGTCAAATTCACGT
1 CTCGTTGCGATAATCAAATCCGCGTTGCGATAGTCAAATTCATGTTGCGATAGTCAAATTCGCGT
6646923 TGTGAGTTT
66 TGTGA-TTT
* * * * *
6646932 CTCGTTGCAATAGTCAAATACC-CGTTGCGATAATCAAATTCACGTTACGATAGTCAAATTCGCG
1 CTCGTTGCGATAATCAAAT-CCGCGTTGCGATAGTCAAATTCATGTTGCGATAGTCAAATTCGCG
*
6646996 TTGCGATAGACAAATT
65 TT--G-T-G---ATTT
* ** * *
6647012 CGCGTTGCGAT--T----TTTGCGTTGCGATAGTCATATTCGTGTTGCGATAGTCAAATTCGCGT
1 CTCGTTGCGATAATCAAATCCGCGTTGCGATAGTCAAATTCATGTTGCGATAGTCAAATTCGCGT
6647071 TGTGATTT
66 TGTGATTT
* * * *
6647079 TTGAGTTGCGATAATCAAATTCGCGTTGCGATATTCAAAT
1 CT-CGTTGCGATAATCAAATCCGCGTTGCGATAGTCAAAT
6647119 GAATGTGTAA
Statistics
Matches: 147, Mismatches: 24, Indels: 32
0.72 0.12 0.16
Matches are distributed among these distances:
67 3 0.02
68 8 0.05
70 2 0.01
71 1 0.01
72 1 0.01
74 114 0.78
75 2 0.01
76 1 0.01
77 1 0.01
78 2 0.01
80 11 0.07
81 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (73 bp):
CTCGTTGCGATAATCAAATCCGCGTTGCGATAGTCAAATTCATGTTGCGATAGTCAAATTCGCGT
TGTGATTT
Found at i:6646968 original size:94 final size:93
Alignment explanation
Indices: 6646806--6647070 Score: 323
Period size: 94 Copynumber: 2.8 Consensus size: 93
6646796 TTGAGTTTCG
* * * *
6646806 CGTTGCGATAGTCTAATACGCTTTGCGATTTTCTCGTTGCGATAGTCAAATACTCGTTGCGATAA
1 CGTTGCGATAGTCAAATTCGCGTTGCGA-TTTCTCGTTGCGATAGTCAAATACCCGTTGCGATAA
* *
6646871 TCAAATCCGCGTCGCGATAGTCAAATTCA
65 TCAAATTCGCGTCACGATAGTCAAATTCA
* * * *
6646900 TGTTGCGATAGTCAAATTCACGTTGTGAGTTTCTCGTTGCAATAGTCAAATACCCGTTGCGATAA
1 CGTTGCGATAGTCAAATTCGCGTTGCGA-TTTCTCGTTGCGATAGTCAAATACCCGTTGCGATAA
* * *
6646965 TCAAATTCACGTTACGATAGTCAAATTCG
65 TCAAATTCGCGTCACGATAGTCAAATTCA
* * * * ** *
6646994 CGTTGCGATAGACAAATTCGCGTTGCGATTTTTGCGTTGCGATAGTCATATTCGTGTTGCGATAG
1 CGTTGCGATAGTCAAATTCGCGTTGCGATTTCT-CGTTGCGATAGTCAAATACCCGTTGCGATAA
6647059 TCAAATTCGCGT
65 TCAAATTCGCGT
6647071 TGTGATTTTT
Statistics
Matches: 144, Mismatches: 26, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
93 4 0.03
94 140 0.97
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (93 bp):
CGTTGCGATAGTCAAATTCGCGTTGCGATTTCTCGTTGCGATAGTCAAATACCCGTTGCGATAAT
CAAATTCGCGTCACGATAGTCAAATTCA
Found at i:6647064 original size:54 final size:54
Alignment explanation
Indices: 6646974--6647118 Score: 218
Period size: 54 Copynumber: 2.7 Consensus size: 54
6646964 ATCAAATTCA
* *
6646974 CGTTACGATAGTCAAATTCGCGTTGCGATAGACAAATTCGCGTTGCGATTTTTG
1 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
* * *
6647028 CGTTGCGATAGTCATATTCGTGTTGCGATAGTCAAATTCGCGTTGTGATTTTTG
1 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
* * *
6647082 AGTTGCGATAATCAAATTCGCGTTGCGATATTCAAAT
1 CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAAT
6647119 GAATGTGTAA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 81 1.00
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (54 bp):
CGTTGCGATAGTCAAATTCGCGTTGCGATAGTCAAATTCGCGTTGCGATTTTTG
Found at i:6647345 original size:140 final size:140
Alignment explanation
Indices: 6647093--6647355 Score: 481
Period size: 140 Copynumber: 1.9 Consensus size: 140
6647083 GTTGCGATAA
*
6647093 TCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACATATCATAGC
1 TCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAAATCATAGC
* *
6647158 AATGTTCAAACTCAAGTTACTAATACATGTCTAACTAAAAATGTTAAAAATTTACACAAAAAATA
66 AATGTTCAAAATCAAGTTACTAATACATGCCTAACTAAAAATGTTAAAAATTTACACAAAAAATA
6647223 CACATAATAG
131 CACATAATAG
6647233 TCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAAATCATAGC
1 TCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAAATCATAGC
* *
6647298 AATGTTCAAAATCAAGTTACTAATACATGCCTAACTGAAAATGTTAAAAGTTTACACA
66 AATGTTCAAAATCAAGTTACTAATACATGCCTAACTAAAAATGTTAAAAATTTACACA
6647356 TAATACAACG
Statistics
Matches: 118, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
140 118 1.00
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.29
Consensus pattern (140 bp):
TCAAATTCGCGTTGCGATATTCAAATGAATGTGTAATAAGTGATAACAACTGAACAAATCATAGC
AATGTTCAAAATCAAGTTACTAATACATGCCTAACTAAAAATGTTAAAAATTTACACAAAAAATA
CACATAATAG
Found at i:6649749 original size:24 final size:24
Alignment explanation
Indices: 6649715--6649768 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
6649705 CTGAAACAAC
6649715 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
6649739 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
6649763 ATCAAA
1 ATCAAA
6649769 TTTCGAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:6650614 original size:20 final size:20
Alignment explanation
Indices: 6650589--6650667 Score: 122
Period size: 20 Copynumber: 4.0 Consensus size: 20
6650579 GAAATTCAGT
*
6650589 GTTGCGACAGTCAGAATCGC
1 GTTGCGATAGTCAGAATCGC
6650609 GTTGCGATAGTCAGAATCGC
1 GTTGCGATAGTCAGAATCGC
*
6650629 GTTGCGATATTCAGAATCGC
1 GTTGCGATAGTCAGAATCGC
* *
6650649 ATTGCGATAGTCATAATCG
1 GTTGCGATAGTCAGAATCG
6650668 TATTGCGATT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (20 bp):
GTTGCGATAGTCAGAATCGC
Found at i:6650672 original size:20 final size:20
Alignment explanation
Indices: 6650590--6650676 Score: 120
Period size: 20 Copynumber: 4.3 Consensus size: 20
6650580 AAATTCAGTG
* *
6650590 TTGCGACAGTCAGAATCGCG
1 TTGCGATAGTCAGAATCGCA
*
6650610 TTGCGATAGTCAGAATCGCG
1 TTGCGATAGTCAGAATCGCA
*
6650630 TTGCGATATTCAGAATCGCA
1 TTGCGATAGTCAGAATCGCA
* *
6650650 TTGCGATAGTCATAATCGTA
1 TTGCGATAGTCAGAATCGCA
6650670 TTGCGAT
1 TTGCGAT
6650677 TTACATATTC
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 61 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCA
Found at i:6650683 original size:20 final size:20
Alignment explanation
Indices: 6650645--6650735 Score: 112
Period size: 20 Copynumber: 4.5 Consensus size: 20
6650635 ATATTCAGAA
* *
6650645 TCGCATTGCGATAGT-CATAA
1 TCGCATTGCGAT-TTACATAT
*
6650665 TCGTATTGCGATTTACATAT
1 TCGCATTGCGATTTACATAT
*
6650685 TCGCATTTCGATTTACATAT
1 TCGCATTGCGATTTACATAT
* *
6650705 TTGCATTGCGATTTATATAT
1 TCGCATTGCGATTTACATAT
6650725 TCGCATTGCGA
1 TCGCATTGCGA
6650736 ATTCGGAAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
19 1 0.02
20 60 0.98
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.41
Consensus pattern (20 bp):
TCGCATTGCGATTTACATAT
Found at i:6650689 original size:40 final size:40
Alignment explanation
Indices: 6650605--6650735 Score: 131
Period size: 40 Copynumber: 3.3 Consensus size: 40
6650595 ACAGTCAGAA
* * * * *
6650605 TCGCGTTGCGATAGTCAGAATCGCGTTGCGATATT-CAGAA
1 TCGCATTGCGATAGTCATAATCGCATTGCGAT-TTACATAT
*
6650645 TCGCATTGCGATAGTCATAATCGTATTGCGATTTACATAT
1 TCGCATTGCGATAGTCATAATCGCATTGCGATTTACATAT
* * * * *
6650685 TCGCATTTCGAT-TTACATATTTGCATTGCGATTTATATAT
1 TCGCATTGCGATAGT-CATAATCGCATTGCGATTTACATAT
6650725 TCGCATTGCGA
1 TCGCATTGCGA
6650736 ATTCGGAAAA
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (40 bp):
TCGCATTGCGATAGTCATAATCGCATTGCGATTTACATAT
Found at i:6652367 original size:15 final size:15
Alignment explanation
Indices: 6652349--6652385 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
6652339 CAAATATATA
*
6652349 TTATTCGAGTATGTG
1 TTATTCGAATATGTG
6652364 TTATTCGAATATGTG
1 TTATTCGAATATGTG
6652379 TTATTCG
1 TTATTCG
6652386 GATCGAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.22, C:0.08, G:0.22, T:0.49
Consensus pattern (15 bp):
TTATTCGAATATGTG
Found at i:6653820 original size:21 final size:21
Alignment explanation
Indices: 6653796--6653885 Score: 126
Period size: 21 Copynumber: 4.3 Consensus size: 21
6653786 TGGTTTGACT
* *
6653796 AGTAGAGGTAGACCGGTTCAG
1 AGTAGAGGTAGACCGATTCAA
* * * *
6653817 AGTATAGGTAGATCGGTTCAG
1 AGTAGAGGTAGACCGATTCAA
6653838 AGTAGAGGTAGACCGATTCAA
1 AGTAGAGGTAGACCGATTCAA
6653859 AGTAGAGGTAGACCGATTCAA
1 AGTAGAGGTAGACCGATTCAA
6653880 AGTAGA
1 AGTAGA
6653886 TGTTCAAATA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 63 1.00
ACGTcount: A:0.34, C:0.12, G:0.32, T:0.21
Consensus pattern (21 bp):
AGTAGAGGTAGACCGATTCAA
Found at i:6656269 original size:15 final size:14
Alignment explanation
Indices: 6656242--6656275 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
6656232 TATATGAAAC
6656242 TGTGATATAAGCTA
1 TGTGATATAAGCTA
*
6656256 TGTGACTATGAGCTA
1 TGTGA-TATAAGCTA
6656271 TGTGA
1 TGTGA
6656276 GTACATGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.29, C:0.09, G:0.26, T:0.35
Consensus pattern (14 bp):
TGTGATATAAGCTA
Found at i:6656462 original size:23 final size:23
Alignment explanation
Indices: 6656424--6656486 Score: 99
Period size: 23 Copynumber: 2.7 Consensus size: 23
6656414 GAGTCGAGAG
6656424 TTCTACGCGGTCCTTCGGGATAT
1 TTCTACGCGGTCCTTCGGGATAT
* *
6656447 TTCTACGTGGTTCTTCGGGATAT
1 TTCTACGCGGTCCTTCGGGATAT
*
6656470 TTCTACGCGGTCATTCG
1 TTCTACGCGGTCCTTCG
6656487 AGACATATAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.13, C:0.24, G:0.25, T:0.38
Consensus pattern (23 bp):
TTCTACGCGGTCCTTCGGGATAT
Found at i:6663461 original size:24 final size:24
Alignment explanation
Indices: 6663429--6663487 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
6663419 TCTAGAAATT
* * **
6663429 GAGTCAACTCGGATCGAGTTGACC
1 GAGTCAACTCAGATCAAGTCAACC
*
6663453 GAGTCAACTCAGATCAAGTCAATC
1 GAGTCAACTCAGATCAAGTCAACC
6663477 GAGTCAACTCA
1 GAGTCAACTCA
6663488 TATCGATTTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.20
Consensus pattern (24 bp):
GAGTCAACTCAGATCAAGTCAACC
Found at i:6664591 original size:21 final size:21
Alignment explanation
Indices: 6664551--6664591 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
6664541 TCTTCCGAAC
*
6664551 TGCCTTTATTTTGGTGATATA
1 TGCCTTTATTTTGATGATATA
6664572 TGCCTATTATTTTGAT-ATAT
1 TGCCT-TTATTTTGATGATAT
6664592 TGATTTATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.22, C:0.10, G:0.15, T:0.54
Consensus pattern (21 bp):
TGCCTTTATTTTGATGATATA
Found at i:6668145 original size:35 final size:35
Alignment explanation
Indices: 6668099--6668168 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
6668089 TTAGTTTGAT
6668099 TAGAAATCTTGGAAATTCTATGAAATAGGAATTAC
1 TAGAAATCTTGGAAATTCTATGAAATAGGAATTAC
6668134 TAGAAATCTTGGAAATTCTATGAAATAGGAATTAC
1 TAGAAATCTTGGAAATTCTATGAAATAGGAATTAC
6668169 CAACTTGAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.31
Consensus pattern (35 bp):
TAGAAATCTTGGAAATTCTATGAAATAGGAATTAC
Found at i:6682609 original size:24 final size:24
Alignment explanation
Indices: 6682582--6682662 Score: 90
Period size: 24 Copynumber: 3.4 Consensus size: 24
6682572 TATATCAAAA
*
6682582 ATCAAAACATAATCCAGGTCAAGT
1 ATCATAACATAATCCAGGTCAAGT
* * * *
6682606 ATCAGATCAGAATTCAGGTCAAGT
1 ATCATAACATAATCCAGGTCAAGT
* * *
6682630 ATCATATCATAATCTAGGTCAGGT
1 ATCATAACATAATCCAGGTCAAGT
6682654 ATCATAACA
1 ATCATAACA
6682663 GAATTCATGT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCATAACATAATCCAGGTCAAGT
Found at i:6684065 original size:16 final size:16
Alignment explanation
Indices: 6684046--6684079 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
6684036 ACCATATAAT
6684046 TTCAGTATTAAAAATC
1 TTCAGTATTAAAAATC
*
6684062 TTCAGTATTAAAACTC
1 TTCAGTATTAAAAATC
6684078 TT
1 TT
6684080 AACCAGGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.41
Consensus pattern (16 bp):
TTCAGTATTAAAAATC
Found at i:6686706 original size:22 final size:22
Alignment explanation
Indices: 6686681--6686729 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
6686671 GTTCATGTTT
*
6686681 TAAAGAGCATGTTTTTATAAAA
1 TAAACAGCATGTTTTTATAAAA
***
6686703 TAAACTTTATGTTTTTATAAAA
1 TAAACAGCATGTTTTTATAAAA
6686725 TAAAC
1 TAAAC
6686730 TTTCATCGAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.45, C:0.06, G:0.08, T:0.41
Consensus pattern (22 bp):
TAAACAGCATGTTTTTATAAAA
Found at i:6686730 original size:22 final size:22
Alignment explanation
Indices: 6686689--6686732 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
6686679 TTTAAAGAGC
6686689 ATGTTTTTATAAAATAAACTTT
1 ATGTTTTTATAAAATAAACTTT
6686711 ATGTTTTTATAAAATAAACTTT
1 ATGTTTTTATAAAATAAACTTT
6686733 CATCGAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.50
Consensus pattern (22 bp):
ATGTTTTTATAAAATAAACTTT
Found at i:6688774 original size:110 final size:110
Alignment explanation
Indices: 6688576--6688809 Score: 346
Period size: 110 Copynumber: 2.1 Consensus size: 110
6688566 GTACACCCAT
* * *
6688576 TACCAATACGAAAATTTATACACTCAATATGAATTTTCTAGTTTTGCACATAAAGTGCCCATATA
1 TACCCATACGAAAATTCATACACTCAATATGAATTTTCTAGTTTTGCACATAAAGTGCCCATACA
6688641 GAAATTCATCCACTTAGTATGAATTTCTTAAGTTTACACATAAAG
66 GAAATTCATCCACTTAGTATGAATTTCTTAAGTTTACACATAAAG
* * * *
6688686 TACCCATACGAAAATTCATCCACTTAGTATGAA-TTTCTTAAGTTTT-CACATAAAGTGCTCATA
1 TACCCATACGAAAATTCATACACTCAATATGAATTTTC-T-AGTTTTGCACATAAAGTGCCCATA
*
6688749 CGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTACACATAAAG
64 CAGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTACACATAAAG
*
6688796 TGCCCATACAGAAA
1 TACCCATAC-GAAA
6688810 TACATAAACA
Statistics
Matches: 112, Mismatches: 9, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
109 4 0.04
110 98 0.88
111 10 0.09
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (110 bp):
TACCCATACGAAAATTCATACACTCAATATGAATTTTCTAGTTTTGCACATAAAGTGCCCATACA
GAAATTCATCCACTTAGTATGAATTTCTTAAGTTTACACATAAAG
Found at i:6688827 original size:110 final size:111
Alignment explanation
Indices: 6688603--6688847 Score: 336
Period size: 110 Copynumber: 2.2 Consensus size: 111
6688593 ATACACTCAA
*
6688603 TATGAATTT-TCT-AGTTTTGCACATAAAGTGCCCATATAGAAATTCATCCACTTAGTATGAATT
1 TATGAATTTCT-TAAGTTTTGCACATAAAGTGCCCATACAGAAATTCATCCACTTAGTATGAATT
* ** **
6688666 TCTTAAGTTTACACATAAAGTACCCATACGAAAATTCATCCACTTAG
65 TCTTAAGTTTACACATAAAGTACCCATACGAAAATACATAAACAAAG
* *
6688713 TATGAATTTCTTAAGTTTT-CACATAAAGTGCTCATACGGAAATTCATCCACTTAGTATGAATTT
1 TATGAATTTCTTAAGTTTTGCACATAAAGTGCCCATACAGAAATTCATCCACTTAGTATGAATTT
* *
6688777 CTTAAGTTTACACATAAAGTGCCCATAC-AGAAATACATAAACAAAT
66 CTTAAGTTTACACATAAAGTACCCATACGA-AAATACATAAACAAAG
*
6688823 TATGAATTTCTTAACTTTTTGCACA
1 TATGAATTTCTTAA-GTTTTGCACA
6688848 CTCAGTGCCA
Statistics
Matches: 119, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
109 1 0.01
110 103 0.87
111 11 0.09
112 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (111 bp):
TATGAATTTCTTAAGTTTTGCACATAAAGTGCCCATACAGAAATTCATCCACTTAGTATGAATTT
CTTAAGTTTACACATAAAGTACCCATACGAAAATACATAAACAAAG
Found at i:6688836 original size:55 final size:55
Alignment explanation
Indices: 6688622--6688810 Score: 317
Period size: 55 Copynumber: 3.4 Consensus size: 55
6688612 TCTAGTTTTG
*
6688622 CACATAAAGTGCCCATATAGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTA
1 CACATAAAGTGCCCATACAGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTA
* *
6688677 CACATAAAGTACCCATAC-GAAAATTCATCCACTTAGTATGAATTTCTTAAGTTTT
1 CACATAAAGTGCCCATACAG-AAATTCATCCACTTAGTATGAATTTCTTAAGTTTA
* *
6688732 CACATAAAGTGCTCATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTA
1 CACATAAAGTGCCCATACAGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTA
6688787 CACATAAAGTGCCCATACAGAAAT
1 CACATAAAGTGCCCATACAGAAAT
6688811 ACATAAACAA
Statistics
Matches: 124, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
54 1 0.01
55 122 0.98
56 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (55 bp):
CACATAAAGTGCCCATACAGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTA
Found at i:6689239 original size:19 final size:21
Alignment explanation
Indices: 6689196--6689249 Score: 76
Period size: 22 Copynumber: 2.6 Consensus size: 21
6689186 TACTCCTACC
6689196 ATGGTACCGATACTACTATAAT
1 ATGGTACCGATACTACTAT-AT
6689218 ATGGTACCGATACT-CTAT-T
1 ATGGTACCGATACTACTATAT
*
6689237 ATGGTATCGATAC
1 ATGGTACCGATAC
6689250 CATTTTACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
19 13 0.42
21 4 0.13
22 14 0.45
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (21 bp):
ATGGTACCGATACTACTATAT
Found at i:6689309 original size:20 final size:20
Alignment explanation
Indices: 6689286--6689323 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6689276 TCAGTACGTT
*
6689286 CCCTTCGGTATCGATACTCC
1 CCCTTCGGTATCAATACTCC
*
6689306 CCCTTTGGTATCAATACT
1 CCCTTCGGTATCAATACT
6689324 GATTGCATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.34, G:0.13, T:0.34
Consensus pattern (20 bp):
CCCTTCGGTATCAATACTCC
Found at i:6695427 original size:54 final size:54
Alignment explanation
Indices: 6695232--6695405 Score: 224
Period size: 55 Copynumber: 3.2 Consensus size: 54
6695222 TTACTAATAT
* * * * * *
6695232 GGAAATTTATACACTTAGTACGAATTTCCT-AGTTTTGCACATAAAGTGGCCATAC
1 GGAAATTCATCCACTTAGTATGAATTTCTTAAG-TATACACATAAAGT-GCCATAC
* * *
6695287 AGAAATTCATCCACTTAGTATGAATTTCTTAAGTATAAACATAACGTGCCCATAC
1 GGAAATTCATCCACTTAGTATGAATTTCTTAAGTATACACATAAAGTG-CCATAC
*
6695342 GGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTACACATAAAGTGCCATAC
1 GGAAATTCATCCACTTAGTATGAATTTCTTAAGTATACACATAAAGTGCCATAC
6695396 GGAAATTCAT
1 GGAAATTCAT
6695406 AAACAAATTA
Statistics
Matches: 104, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
54 17 0.16
55 85 0.82
56 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (54 bp):
GGAAATTCATCCACTTAGTATGAATTTCTTAAGTATACACATAAAGTGCCATAC
Found at i:6695829 original size:19 final size:21
Alignment explanation
Indices: 6695786--6695838 Score: 74
Period size: 22 Copynumber: 2.6 Consensus size: 21
6695776 TACCCTTACC
6695786 ATGGTATTGATACTACTATACT
1 ATGGTATTGATACTACTATA-T
*
6695808 ATGGTACTGATACT-CTAT-T
1 ATGGTATTGATACTACTATAT
6695827 ATGGTATTGATA
1 ATGGTATTGATA
6695839 TCATTTTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 12 0.41
21 4 0.14
22 13 0.45
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (21 bp):
ATGGTATTGATACTACTATAT
Found at i:6702226 original size:21 final size:21
Alignment explanation
Indices: 6702200--6702240 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
6702190 GAGCTATGGC
6702200 TTTGCAACAATGCT-GCTTGGT
1 TTTGCAACAATG-TGGCTTGGT
*
6702221 TTTGCAATAATGTGGCTTGG
1 TTTGCAACAATGTGGCTTGG
6702241 CTCGTAATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.20, C:0.15, G:0.27, T:0.39
Consensus pattern (21 bp):
TTTGCAACAATGTGGCTTGGT
Found at i:6703573 original size:23 final size:25
Alignment explanation
Indices: 6703528--6703574 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
6703518 AAGAAATAAA
6703528 CAAAAAATAACAAGTAAAACTAATAG
1 CAAAAAATAACAAG-AAAACTAATAG
6703554 CAAAAAATAAC-A-AAAACTAAT
1 CAAAAAATAACAAGAAAACTAAT
6703575 GCTATAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 9 0.43
25 1 0.05
26 11 0.52
ACGTcount: A:0.68, C:0.13, G:0.04, T:0.15
Consensus pattern (25 bp):
CAAAAAATAACAAGAAAACTAATAG
Found at i:6703592 original size:23 final size:23
Alignment explanation
Indices: 6703528--6703596 Score: 61
Period size: 22 Copynumber: 2.9 Consensus size: 23
6703518 AAGAAATAAA
6703528 CAAAAAATAACAAGTAAAACTAATAG
1 CAAAAAATAAC---TAAAACTAATAG
*
6703554 CAAAAAATAACAAAAACTAAT-G
1 CAAAAAATAACTAAAACTAATAG
* *
6703576 CTATAAATAACTTAAAA-TAAT
1 CAAAAAATAAC-TAAAACTAAT
6703597 CAGTTACAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
22 14 0.37
23 13 0.34
26 11 0.29
ACGTcount: A:0.64, C:0.12, G:0.04, T:0.20
Consensus pattern (23 bp):
CAAAAAATAACTAAAACTAATAG
Found at i:6708074 original size:3 final size:3
Alignment explanation
Indices: 6708066--6708110 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
6708056 ATATTTGAGG
6708066 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6708111 TATGTATTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:6708120 original size:8 final size:7
Alignment explanation
Indices: 6708067--6708120 Score: 57
Period size: 6 Copynumber: 8.4 Consensus size: 7
6708057 TATTTGAGGA
6708067 TTATTA-
1 TTATTAT
6708073 TTATTA-
1 TTATTAT
6708079 TTATTA-
1 TTATTAT
6708085 TTATTA-
1 TTATTAT
6708091 TTATTA-
1 TTATTAT
6708097 TTATTA-
1 TTATTAT
6708103 TTATTAT
1 TTATTAT
6708110 TTATGTAT
1 TTAT-TAT
6708118 TTA
1 TTA
6708121 AGACTTTGGA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
6 36 0.78
7 4 0.09
8 6 0.13
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (7 bp):
TTATTAT
Found at i:6708136 original size:36 final size:36
Alignment explanation
Indices: 6708096--6708206 Score: 112
Period size: 36 Copynumber: 3.3 Consensus size: 36
6708086 TATTATTATT
*
6708096 ATTATTATTATTATTTATGTATTTAAGACTTTGGAC
1 ATTATAATTATTATTTATGTATTTAAGACTTTGGAC
* **
6708132 ATTATAATTA--ATTT-TGAAACT-A-A-TTAT-G-C
1 ATTATAATTATTATTTATGTATTTAAGACTT-TGGAC
*
6708161 ATTATTATTATTATTTATGTATTTAAGACTTTGGAC
1 ATTATAATTATTATTTATGTATTTAAGACTTTGGAC
6708197 ATTATAATTA
1 ATTATAATTA
6708207 ATTTTGAAAC
Statistics
Matches: 57, Mismatches: 9, Indels: 18
0.68 0.11 0.21
Matches are distributed among these distances:
29 10 0.18
30 3 0.05
31 6 0.11
32 5 0.09
33 5 0.09
34 6 0.11
35 3 0.05
36 19 0.33
ACGTcount: A:0.35, C:0.05, G:0.09, T:0.50
Consensus pattern (36 bp):
ATTATAATTATTATTTATGTATTTAAGACTTTGGAC
Found at i:6708175 original size:65 final size:65
Alignment explanation
Indices: 6708096--6708225 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
6708086 TATTATTATT
6708096 ATTATTATTATTATTTATGTATTTAAGACTTTGGACATTATAATTAATTTTGAAACTAATTATGC
1 ATTATTATTATTATTTATGTATTTAAGACTTTGGACATTATAATTAATTTTGAAACTAATTATGC
6708161 ATTATTATTATTATTTATGTATTTAAGACTTTGGACATTATAATTAATTTTGAAACTAATTATGC
1 ATTATTATTATTATTTATGTATTTAAGACTTTGGACATTATAATTAATTTTGAAACTAATTATGC
6708226 TTGACTTTTG
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.49
Consensus pattern (65 bp):
ATTATTATTATTATTTATGTATTTAAGACTTTGGACATTATAATTAATTTTGAAACTAATTATGC
Found at i:6709475 original size:34 final size:34
Alignment explanation
Indices: 6709437--6709504 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
6709427 CTTCTGATAC
6709437 AAATACTCCGACATTCTTGGGAATCAAATCCAAG
1 AAATACTCCGACATTCTTGGGAATCAAATCCAAG
*
6709471 AAATACTCCTACATTCTTGGGAATCAAATCCAAG
1 AAATACTCCGACATTCTTGGGAATCAAATCCAAG
6709505 TGATAACCGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.38, C:0.24, G:0.13, T:0.25
Consensus pattern (34 bp):
AAATACTCCGACATTCTTGGGAATCAAATCCAAG
Found at i:6711644 original size:29 final size:30
Alignment explanation
Indices: 6711549--6711654 Score: 81
Period size: 31 Copynumber: 3.5 Consensus size: 30
6711539 GATGTATTGG
* * * * *
6711549 TGATTCTGAATGGGACTATGTTCCACCATTC
1 TGATTTTGTATGGGATTATATTCC-CCATCC
* *
6711580 TGATTTTGTATGGGATTATATTCCCCGTCT
1 TGATTTTGTATGGGATTATATTCCCCATCC
* *
6711610 TAATTTTGTATAGGG-TT-TATTCTCCATCC
1 TGATTTTGTAT-GGGATTATATTCCCCATCC
**
6711639 TGATTTTACATGGGAT
1 TGATTTTGTATGGGAT
6711655 CTTATCCCCG
Statistics
Matches: 59, Mismatches: 14, Indels: 6
0.75 0.18 0.08
Matches are distributed among these distances:
28 3 0.05
29 18 0.31
30 15 0.25
31 23 0.39
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (30 bp):
TGATTTTGTATGGGATTATATTCCCCATCC
Found at i:6717572 original size:17 final size:17
Alignment explanation
Indices: 6717527--6717572 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 17
6717517 ATTTTTGACT
*
6717527 CGTTGATCGACCCGACC
1 CGTTGACCGACCCGACC
* * *
6717544 CGTTAACTGACCCTACC
1 CGTTGACCGACCCGACC
6717561 CGTTGACCGACC
1 CGTTGACCGACC
6717573 TGTTAACTGT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.20, C:0.41, G:0.20, T:0.20
Consensus pattern (17 bp):
CGTTGACCGACCCGACC
Found at i:6718223 original size:30 final size:30
Alignment explanation
Indices: 6718183--6718285 Score: 93
Period size: 29 Copynumber: 3.5 Consensus size: 30
6718173 GATACATTCT
* * *
6718183 TGATTTTGCATGGGACTATGTTCCCCGTCC
1 TGATTCTGCATGGGAATATATTCCCCGTCC
* *
6718213 TGATTCTGCAT-GGAATTTATTCCCCGTCT
1 TGATTCTGCATGGGAATATATTCCCCGTCC
* * * * *
6718242 TGATTCTTCATGGG-ATTTATTACTCATCC
1 TGATTCTGCATGGGAATATATTCCCCGTCC
*
6718271 TGATTTTGCATGGGA
1 TGATTCTGCATGGGA
6718286 TCTTATCCCC
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
29 47 0.80
30 12 0.20
ACGTcount: A:0.17, C:0.21, G:0.20, T:0.41
Consensus pattern (30 bp):
TGATTCTGCATGGGAATATATTCCCCGTCC
Found at i:6718245 original size:29 final size:29
Alignment explanation
Indices: 6718180--6718262 Score: 94
Period size: 29 Copynumber: 2.8 Consensus size: 29
6718170 ATTGATACAT
* * * *
6718180 TCTTGATTTTGCATGGGACTATGTTCCCCG
1 TCTTGATTCTGCAT-GGAATTTATTCCCCG
*
6718210 TCCTGATTCTGCATGGAATTTATTCCCCG
1 TCTTGATTCTGCATGGAATTTATTCCCCG
* *
6718239 TCTTGATTCTTCATGGGATTTATT
1 TCTTGATTCTGCATGGAATTTATT
6718263 ACTCATCCTG
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 33 0.73
30 12 0.27
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.43
Consensus pattern (29 bp):
TCTTGATTCTGCATGGAATTTATTCCCCG
Found at i:6718274 original size:29 final size:29
Alignment explanation
Indices: 6718210--6718306 Score: 90
Period size: 29 Copynumber: 3.3 Consensus size: 29
6718200 ATGTTCCCCG
* * * *
6718210 TCCTGATTCTGCATGGAATTTATTCCCCG
1 TCCTGATTCTTCATGGGATTTATTACCCA
* *
6718239 TCTTGATTCTTCATGGGATTTATTACTCA
1 TCCTGATTCTTCATGGGATTTATTACCCA
*
6718268 TCCTGATT-TTGCATGGGATCTTA-TCCCCA
1 TCCTGATTCTT-CATGGGAT-TTATTACCCA
*
6718297 TCCTGTTTCT
1 TCCTGATTCT
6718307 GTTTGGGATC
Statistics
Matches: 55, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
28 2 0.04
29 49 0.89
30 4 0.07
ACGTcount: A:0.16, C:0.25, G:0.15, T:0.43
Consensus pattern (29 bp):
TCCTGATTCTTCATGGGATTTATTACCCA
Found at i:6719478 original size:20 final size:19
Alignment explanation
Indices: 6719446--6719484 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
6719436 CATAGGTCTC
6719446 GTTAGTTCATTTACGTTCG
1 GTTAGTTCATTTACGTTCG
* *
6719465 GTTATGTTCGTTTATGTTCG
1 GTTA-GTTCATTTACGTTCG
6719485 TTCGGTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.13, C:0.13, G:0.23, T:0.51
Consensus pattern (19 bp):
GTTAGTTCATTTACGTTCG
Found at i:6720263 original size:10 final size:10
Alignment explanation
Indices: 6720248--6720322 Score: 61
Period size: 10 Copynumber: 7.7 Consensus size: 10
6720238 GGGTCTCCAA
6720248 CGTTTATGTT
1 CGTTTATGTT
6720258 CGTTTATGTT
1 CGTTTATGTT
6720268 CGTGTTCAT-TT
1 CGT-TT-ATGTT
* **
6720279 ATGTTCGTGTT
1 -CGTTTATGTT
6720290 CGTTTATGTT
1 CGTTTATGTT
6720300 CG----TGTT
1 CGTTTATGTT
6720306 CGTTTATGTT
1 CGTTTATGTT
6720316 CGTTTAT
1 CGTTTAT
6720323 TTATTAAATG
Statistics
Matches: 51, Mismatches: 6, Indels: 16
0.70 0.08 0.22
Matches are distributed among these distances:
6 6 0.12
10 34 0.67
11 7 0.14
12 4 0.08
ACGTcount: A:0.09, C:0.12, G:0.21, T:0.57
Consensus pattern (10 bp):
CGTTTATGTT
Found at i:6720279 original size:16 final size:16
Alignment explanation
Indices: 6720254--6720318 Score: 121
Period size: 16 Copynumber: 4.1 Consensus size: 16
6720244 CCAACGTTTA
6720254 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
*
6720270 TGTTCATTTATGTTCG
1 TGTTCGTTTATGTTCG
6720286 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
6720302 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
6720318 T
1 T
6720319 TTATTTATTA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.08, C:0.12, G:0.23, T:0.57
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:6722298 original size:2 final size:2
Alignment explanation
Indices: 6722291--6722323 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6722281 CCGTTATAGA
6722291 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6722324 AAGTTATGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6722920 original size:86 final size:86
Alignment explanation
Indices: 6722775--6722953 Score: 322
Period size: 86 Copynumber: 2.1 Consensus size: 86
6722765 ATATATTGAA
6722775 ACAAATTAATTCATATTTTGGCTAAGTCTGATATTTTAGAAGATTTGTTTAAACAAAATGCCGCC
1 ACAAATTAATTCATATTTTGGCTAAGTCTGATATTTTAGAAGATTTGTTTAAACAAAATGCCGCC
6722840 AAAGTAACCTCTTTTGTGTAG
66 AAAGTAACCTCTTTTGTGTAG
* *
6722861 ACAAATTAATTCATATTTTGGCTAAGTCTGATATTTTAGTAGATTTGTTTAAACAAAATGCCGTC
1 ACAAATTAATTCATATTTTGGCTAAGTCTGATATTTTAGAAGATTTGTTTAAACAAAATGCCGCC
*
6722926 AAAGTAATCTCTTTTGTGTAG
66 AAAGTAACCTCTTTTGTGTAG
*
6722947 ACTAATT
1 ACAAATT
6722954 TATTTAAAAT
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
86 89 1.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.39
Consensus pattern (86 bp):
ACAAATTAATTCATATTTTGGCTAAGTCTGATATTTTAGAAGATTTGTTTAAACAAAATGCCGCC
AAAGTAACCTCTTTTGTGTAG
Found at i:6722993 original size:17 final size:17
Alignment explanation
Indices: 6722971--6723003 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6722961 AATATCAAGA
6722971 TGATTATATGTTTATTG
1 TGATTATATGTTTATTG
*
6722988 TGATTATGTGTTTATT
1 TGATTATATGTTTATT
6723004 AATTGGCCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.18, T:0.61
Consensus pattern (17 bp):
TGATTATATGTTTATTG
Found at i:6727600 original size:20 final size:20
Alignment explanation
Indices: 6727577--6727655 Score: 86
Period size: 20 Copynumber: 4.0 Consensus size: 20
6727567 AACCGATCCG
*
6727577 AGTCAACCCGAACCAGTTTA
1 AGTCAACCCGAACCAGTCTA
*
6727597 AGTCAACCCGAACCAGTCTG
1 AGTCAACCCGAACCAGTCTA
* ** **
6727617 AGTCAACCCAAACCAACCCG
1 AGTCAACCCGAACCAGTCTA
*
6727637 AGTCAACCCGAACTAGTCT
1 AGTCAACCCGAACCAGTCT
6727656 GACCCATTGA
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.34, C:0.35, G:0.15, T:0.15
Consensus pattern (20 bp):
AGTCAACCCGAACCAGTCTA
Found at i:6731380 original size:30 final size:30
Alignment explanation
Indices: 6731286--6731380 Score: 120
Period size: 30 Copynumber: 3.1 Consensus size: 30
6731276 AAAAATGAAT
*
6731286 AATTTTAATTTTACCCTTAAACTTTAAATAA
1 AATTTTAATTTAACCCTTAAA-TTTAAATAA
* ** *
6731317 AATATT-ATTTGAACCCTGGATTTTAAATAA
1 AATTTTAATTT-AACCCTTAAATTTAAATAA
6731347 AATTTTAATTTAACCCTTAAATTTAAATAA
1 AATTTTAATTTAACCCTTAAATTTAAATAA
6731377 AATT
1 AATT
6731381 AGTGATGTTG
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
30 38 0.72
31 15 0.28
ACGTcount: A:0.43, C:0.11, G:0.03, T:0.43
Consensus pattern (30 bp):
AATTTTAATTTAACCCTTAAATTTAAATAA
Found at i:6733367 original size:4 final size:4
Alignment explanation
Indices: 6733358--6733384 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
6733348 GAGAGAAACA
6733358 GAGG GAGG GAGG GAGG GAGG GAGG GAG
1 GAGG GAGG GAGG GAGG GAGG GAGG GAG
6733385 CATACCATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.74, T:0.00
Consensus pattern (4 bp):
GAGG
Found at i:6738146 original size:120 final size:120
Alignment explanation
Indices: 6737933--6738175 Score: 414
Period size: 120 Copynumber: 2.0 Consensus size: 120
6737923 CACGGTTTAG
* *
6737933 TGGGCCCTATAAGTAAAAGGAAAGTAGCAAATTAGACATTAAACATAATGAACAGTGAATTTATT
1 TGGGCCCTATAAGTAAAAGGAAAGTAGCAAATTAGACATTAAACATAATGAAAAGTGAATTTATG
*
6737998 CCACATTAGTAACACAAAAGAAGTGATTTTCAGTCAAGATCACATAAGCTTAACA
66 CCACATTAGTAACACAAAAGAAGTGATTTTCAGTCAAAATCACATAAGCTTAACA
* * *
6738053 TGGGCCCTGTGAGTAAAAGGAAAGTAGCAAATTAGACATTTAACATAATGAAAAGTGAATTTATG
1 TGGGCCCTATAAGTAAAAGGAAAGTAGCAAATTAGACATTAAACATAATGAAAAGTGAATTTATG
* *
6738118 CCACATTAGTAGCACAAAAGAAGTGATTTTCTGTCAAAATCACATAAGCTTAACA
66 CCACATTAGTAACACAAAAGAAGTGATTTTCAGTCAAAATCACATAAGCTTAACA
6738173 TGG
1 TGG
6738176 TCATAGAACT
Statistics
Matches: 115, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
120 115 1.00
ACGTcount: A:0.42, C:0.14, G:0.18, T:0.26
Consensus pattern (120 bp):
TGGGCCCTATAAGTAAAAGGAAAGTAGCAAATTAGACATTAAACATAATGAAAAGTGAATTTATG
CCACATTAGTAACACAAAAGAAGTGATTTTCAGTCAAAATCACATAAGCTTAACA
Found at i:6741108 original size:17 final size:17
Alignment explanation
Indices: 6741088--6741136 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
6741078 TTTAAAATTT
6741088 TTATTATTGAAAAAATA
1 TTATTATTGAAAAAATA
*
6741105 TTA-TATTTTAAAAAATA
1 TTATTA-TTGAAAAAATA
6741122 TT-TT-TTAGAAAAAAT
1 TTATTATT-GAAAAAAT
6741137 CAAAAACCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
15 2 0.07
16 9 0.33
17 16 0.59
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (17 bp):
TTATTATTGAAAAAATA
Found at i:6742940 original size:81 final size:81
Alignment explanation
Indices: 6742800--6742969 Score: 250
Period size: 81 Copynumber: 2.1 Consensus size: 81
6742790 TTAAAACCTT
* * * *
6742800 ATAAAGAAAATCTGATGGGACATAACCTTGGTTAAGGGGAAAAGGGTACAACATGTGTTTATTCT
1 ATAAAGAAAATCTGATGGGACAAAACCTTGGTTAAGGAGAAAAGAGTACAACATGTGTTTACTCT
* *
6742865 CCCTCTTGATCATATC
66 CCCTCATAATCATATC
* * *
6742881 ATAAGGAAAATCTGATGGGATAAAACTTTGGTTAAGGAGAAAAGAGTACAACATGTGTTTACTCT
1 ATAAAGAAAATCTGATGGGACAAAACCTTGGTTAAGGAGAAAAGAGTACAACATGTGTTTACTCT
6742946 CCCTCATAATCATATC
66 CCCTCATAATCATATC
6742962 ATATAAGA
1 ATA-AAGA
6742970 TCTTTAAGCT
Statistics
Matches: 78, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
81 75 0.96
82 3 0.04
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (81 bp):
ATAAAGAAAATCTGATGGGACAAAACCTTGGTTAAGGAGAAAAGAGTACAACATGTGTTTACTCT
CCCTCATAATCATATC
Found at i:6753994 original size:12 final size:12
Alignment explanation
Indices: 6753979--6756241 Score: 3976
Period size: 12 Copynumber: 188.9 Consensus size: 12
6753969 AACATGCATA
*
6753979 TATGCATGTATG
1 TATGTATGTATG
6753991 TATGTATGTATG
1 TATGTATGTATG
6754003 TATGTATGTATG
1 TATGTATGTATG
6754015 TATGTATGTATG
1 TATGTATGTATG
6754027 TATGTATGTATG
1 TATGTATGTATG
6754039 TATGTATGTATG
1 TATGTATGTATG
6754051 TATGTATGTATG
1 TATGTATGTATG
6754063 TATGTATGTATG
1 TATGTATGTATG
6754075 TATGTATGTATG
1 TATGTATGTATG
6754087 TATGTATGTATG
1 TATGTATGTATG
6754099 TATGTATGTATG
1 TATGTATGTATG
6754111 TATGTATGTATG
1 TATGTATGTATG
6754123 TATGTATGTATG
1 TATGTATGTATG
6754135 TATGTATGTATG
1 TATGTATGTATG
6754147 TATGTATGTATG
1 TATGTATGTATG
6754159 TATGTATGTATG
1 TATGTATGTATG
6754171 TATGTATGTATG
1 TATGTATGTATG
6754183 TATGTATGTATG
1 TATGTATGTATG
6754195 TATGTATGTATG
1 TATGTATGTATG
6754207 TATGTATGTATG
1 TATGTATGTATG
6754219 TATGTATGTATG
1 TATGTATGTATG
6754231 TATGTATGTATG
1 TATGTATGTATG
6754243 TATGTATGTATG
1 TATGTATGTATG
6754255 TATGTATGTATG
1 TATGTATGTATG
6754267 TATGTATGTATG
1 TATGTATGTATG
6754279 TATGTATGTATG
1 TATGTATGTATG
6754291 TATGTATGTATG
1 TATGTATGTATG
6754303 TATGTATGTATG
1 TATGTATGTATG
6754315 TATGTATGTATG
1 TATGTATGTATG
6754327 TATGTATGTATG
1 TATGTATGTATG
6754339 TATGTATGTATG
1 TATGTATGTATG
6754351 TATGTATGTATG
1 TATGTATGTATG
6754363 TATGTATGTATG
1 TATGTATGTATG
6754375 TATGTATGTATG
1 TATGTATGTATG
6754387 TATGTATGTATG
1 TATGTATGTATG
6754399 TATGTATGTATG
1 TATGTATGTATG
6754411 TATGTATGTATG
1 TATGTATGTATG
6754423 TATGTATGTATG
1 TATGTATGTATG
6754435 TATGTATGTATG
1 TATGTATGTATG
6754447 TATGTATGTATG
1 TATGTATGTATG
6754459 TATGTATGTATG
1 TATGTATGTATG
6754471 TATGTATGTATG
1 TATGTATGTATG
6754483 TATGTATGTATG
1 TATGTATGTATG
6754495 TATGTATGTATG
1 TATGTATGTATG
*
6754507 TATGTATGCATG
1 TATGTATGTATG
*
6754519 CATGTATGTATG
1 TATGTATGTATG
* *
6754531 TATGCATGCATG
1 TATGTATGTATG
* * *
6754543 CATGCATGCATG
1 TATGTATGTATG
6754555 TATGTATGTATG
1 TATGTATGTATG
6754567 TATGTATGTATG
1 TATGTATGTATG
6754579 TATGTATGTATG
1 TATGTATGTATG
6754591 TATGTATGTATG
1 TATGTATGTATG
6754603 TATGTATGTATG
1 TATGTATGTATG
6754615 TATGTATGTATG
1 TATGTATGTATG
6754627 TATGTATGTATG
1 TATGTATGTATG
*
6754639 TATGCATGTATG
1 TATGTATGTATG
*
6754651 TATGCATGTATG
1 TATGTATGTATG
*
6754663 TATGCATGTATG
1 TATGTATGTATG
*
6754675 TATGCATGTATG
1 TATGTATGTATG
*
6754687 TATGCATGTATG
1 TATGTATGTATG
*
6754699 TATGCATGTATG
1 TATGTATGTATG
* *
6754711 TATGCATGCATG
1 TATGTATGTATG
* *
6754723 TATGCATGCATG
1 TATGTATGTATG
* *
6754735 TATGCATGCATG
1 TATGTATGTATG
* *
6754747 TATGCATGCATG
1 TATGTATGTATG
* *
6754759 TATGCATGCATG
1 TATGTATGTATG
* *
6754771 TATGCATGCATG
1 TATGTATGTATG
* *
6754783 TATGCATGCATG
1 TATGTATGTATG
* *
6754795 TATGCATGCATG
1 TATGTATGTATG
* *
6754807 TATGCATGCATG
1 TATGTATGTATG
*
6754819 TATGCATGTATG
1 TATGTATGTATG
* *
6754831 TATGCATGCATG
1 TATGTATGTATG
* *
6754843 TATGCATGCATG
1 TATGTATGTATG
*
6754855 TATGCATGTATG
1 TATGTATGTATG
6754867 TATGTATGTATG
1 TATGTATGTATG
6754879 TATGTATGTATG
1 TATGTATGTATG
6754891 TATGTATGTATG
1 TATGTATGTATG
6754903 TATGTATGTATG
1 TATGTATGTATG
6754915 TATGTATGTATG
1 TATGTATGTATG
6754927 TATGTATGTATG
1 TATGTATGTATG
6754939 TATGTATGTATG
1 TATGTATGTATG
6754951 TATGTATGTATG
1 TATGTATGTATG
6754963 TATGTATGTATG
1 TATGTATGTATG
6754975 TATGTATGTATG
1 TATGTATGTATG
6754987 TATGTATGTATG
1 TATGTATGTATG
6754999 TATGTATGTATG
1 TATGTATGTATG
6755011 TATGTATGTATG
1 TATGTATGTATG
6755023 TATGTATGTATG
1 TATGTATGTATG
6755035 TATGTATGTATG
1 TATGTATGTATG
6755047 TATGTATGTATG
1 TATGTATGTATG
6755059 TATGTATGTATG
1 TATGTATGTATG
6755071 TATGTATGTATG
1 TATGTATGTATG
6755083 TATGTATGTATG
1 TATGTATGTATG
6755095 TATGTATG--TG
1 TATGTATGTATG
6755105 TATGTATGTATG
1 TATGTATGTATG
6755117 TATGTATGTATG
1 TATGTATGTATG
6755129 TATGTATGTATG
1 TATGTATGTATG
6755141 TATGTATGTATG
1 TATGTATGTATG
6755153 TATGTATGTATG
1 TATGTATGTATG
6755165 TATGTATGTATG
1 TATGTATGTATG
6755177 TATGTATGTATG
1 TATGTATGTATG
6755189 TATGTATGTATG
1 TATGTATGTATG
6755201 TATGTATGTATG
1 TATGTATGTATG
6755213 TATGTATGTATG
1 TATGTATGTATG
6755225 TATGTATGTATG
1 TATGTATGTATG
6755237 TATGTATGTATG
1 TATGTATGTATG
6755249 TATGTATGTATG
1 TATGTATGTATG
6755261 TATGTATGTATG
1 TATGTATGTATG
6755273 TATGTATGTATG
1 TATGTATGTATG
6755285 TATGTATGTATG
1 TATGTATGTATG
6755297 TATGTATGTATG
1 TATGTATGTATG
6755309 TATGTATGTATG
1 TATGTATGTATG
6755321 TATGTATGTATG
1 TATGTATGTATG
6755333 TATGTATGTATG
1 TATGTATGTATG
6755345 TATGTATGTATG
1 TATGTATGTATG
6755357 TATGTATG--TG
1 TATGTATGTATG
6755367 TATGTATGTATG
1 TATGTATGTATG
6755379 TATGTATGTATG
1 TATGTATGTATG
6755391 TATGTATGTATG
1 TATGTATGTATG
6755403 TATGTATGTATG
1 TATGTATGTATG
6755415 TATGTATGTATG
1 TATGTATGTATG
6755427 TATGTATGTATG
1 TATGTATGTATG
6755439 TATGTATGTATG
1 TATGTATGTATG
6755451 TATGTATGTATG
1 TATGTATGTATG
6755463 TATGTATGTATG
1 TATGTATGTATG
6755475 TATGTATGTATG
1 TATGTATGTATG
6755487 TATGTATGTATG
1 TATGTATGTATG
6755499 TATGTATGTATG
1 TATGTATGTATG
6755511 TATGTATGTATG
1 TATGTATGTATG
6755523 TATGTATGTATG
1 TATGTATGTATG
6755535 TATGTATGTATG
1 TATGTATGTATG
6755547 TATGTATGTATG
1 TATGTATGTATG
6755559 TATGTATGTATG
1 TATGTATGTATG
6755571 TATGTATGTATG
1 TATGTATGTATG
6755583 TATGTATGTATG
1 TATGTATGTATG
6755595 TATGTATGTATG
1 TATGTATGTATG
6755607 TATGTATGTATG
1 TATGTATGTATG
6755619 TATGTATGTATG
1 TATGTATGTATG
6755631 TATGTATGTATG
1 TATGTATGTATG
6755643 TATGTATGTATG
1 TATGTATGTATG
6755655 TATGTATGTATG
1 TATGTATGTATG
6755667 TATGTATGTATG
1 TATGTATGTATG
6755679 TATGTATGTATG
1 TATGTATGTATG
6755691 TATGTATGTATG
1 TATGTATGTATG
6755703 TATGTATGTATG
1 TATGTATGTATG
6755715 TATGTATGTATG
1 TATGTATGTATG
6755727 TATGTATGTATG
1 TATGTATGTATG
6755739 TATGTATGTATG
1 TATGTATGTATG
6755751 TATGTATGTATG
1 TATGTATGTATG
6755763 TATGTATGTATG
1 TATGTATGTATG
6755775 TATGTATGTATG
1 TATGTATGTATG
6755787 TATGTATGTATG
1 TATGTATGTATG
6755799 TATGTATGTATG
1 TATGTATGTATG
6755811 TATGTATGTATG
1 TATGTATGTATG
6755823 TATGTATGTATG
1 TATGTATGTATG
6755835 TATGTATGTATG
1 TATGTATGTATG
6755847 TATGTATGTATG
1 TATGTATGTATG
*
6755859 TATGGATGTATG
1 TATGTATGTATG
* *
6755871 CATGTATGCATG
1 TATGTATGTATG
* *
6755883 CATGTATGCATG
1 TATGTATGTATG
*
6755895 TATGCATGTATG
1 TATGTATGTATG
6755907 TATGTATGTATG
1 TATGTATGTATG
6755919 TATGTATGTATG
1 TATGTATGTATG
6755931 TATGTATGTATG
1 TATGTATGTATG
6755943 TATGTATGTATG
1 TATGTATGTATG
6755955 TATGTATGTATG
1 TATGTATGTATG
6755967 TATGTATGTATG
1 TATGTATGTATG
*
6755979 TATGCATGTATG
1 TATGTATGTATG
* *
6755991 CATGTATGCATG
1 TATGTATGTATG
*
6756003 TATGCATGTATG
1 TATGTATGTATG
* *
6756015 CATGTATGCATG
1 TATGTATGTATG
*
6756027 TATGCATGTATG
1 TATGTATGTATG
* *
6756039 CATGTATGCATG
1 TATGTATGTATG
* *
6756051 TATGCATGTATA
1 TATGTATGTATG
6756063 TATGTATGTATG
1 TATGTATGTATG
6756075 TATGTATGTATG
1 TATGTATGTATG
6756087 TATGTATGTATG
1 TATGTATGTATG
6756099 TATGTATGTATG
1 TATGTATGTATG
6756111 TATGTATGTATG
1 TATGTATGTATG
6756123 TATGTATGTATG
1 TATGTATGTATG
6756135 TATGTATGTATG
1 TATGTATGTATG
6756147 TATGTATGTATG
1 TATGTATGTATG
6756159 TATGTATGTATG
1 TATGTATGTATG
6756171 TATGTATGTATG
1 TATGTATGTATG
6756183 TATGTATGTATG
1 TATGTATGTATG
6756195 TATGTATGTATG
1 TATGTATGTATG
6756207 TATGTATGTATG
1 TATGTATGTATG
* *
6756219 TATGTATGCATT
1 TATGTATGTATG
*
6756231 TATGCATGTAT
1 TATGTATGTAT
6756242 CAAGCACAGA
Statistics
Matches: 2196, Mismatches: 51, Indels: 8
0.97 0.02 0.00
Matches are distributed among these distances:
10 20 0.01
12 2176 0.99
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (12 bp):
TATGTATGTATG
Found at i:6753995 original size:8 final size:8
Alignment explanation
Indices: 6753979--6756241 Score: 3976
Period size: 8 Copynumber: 283.4 Consensus size: 8
6753969 AACATGCATA
*
6753979 TATGCATG
1 TATGTATG
6753987 TATGTATG
1 TATGTATG
6753995 TATGTATG
1 TATGTATG
6754003 TATGTATG
1 TATGTATG
6754011 TATGTATG
1 TATGTATG
6754019 TATGTATG
1 TATGTATG
6754027 TATGTATG
1 TATGTATG
6754035 TATGTATG
1 TATGTATG
6754043 TATGTATG
1 TATGTATG
6754051 TATGTATG
1 TATGTATG
6754059 TATGTATG
1 TATGTATG
6754067 TATGTATG
1 TATGTATG
6754075 TATGTATG
1 TATGTATG
6754083 TATGTATG
1 TATGTATG
6754091 TATGTATG
1 TATGTATG
6754099 TATGTATG
1 TATGTATG
6754107 TATGTATG
1 TATGTATG
6754115 TATGTATG
1 TATGTATG
6754123 TATGTATG
1 TATGTATG
6754131 TATGTATG
1 TATGTATG
6754139 TATGTATG
1 TATGTATG
6754147 TATGTATG
1 TATGTATG
6754155 TATGTATG
1 TATGTATG
6754163 TATGTATG
1 TATGTATG
6754171 TATGTATG
1 TATGTATG
6754179 TATGTATG
1 TATGTATG
6754187 TATGTATG
1 TATGTATG
6754195 TATGTATG
1 TATGTATG
6754203 TATGTATG
1 TATGTATG
6754211 TATGTATG
1 TATGTATG
6754219 TATGTATG
1 TATGTATG
6754227 TATGTATG
1 TATGTATG
6754235 TATGTATG
1 TATGTATG
6754243 TATGTATG
1 TATGTATG
6754251 TATGTATG
1 TATGTATG
6754259 TATGTATG
1 TATGTATG
6754267 TATGTATG
1 TATGTATG
6754275 TATGTATG
1 TATGTATG
6754283 TATGTATG
1 TATGTATG
6754291 TATGTATG
1 TATGTATG
6754299 TATGTATG
1 TATGTATG
6754307 TATGTATG
1 TATGTATG
6754315 TATGTATG
1 TATGTATG
6754323 TATGTATG
1 TATGTATG
6754331 TATGTATG
1 TATGTATG
6754339 TATGTATG
1 TATGTATG
6754347 TATGTATG
1 TATGTATG
6754355 TATGTATG
1 TATGTATG
6754363 TATGTATG
1 TATGTATG
6754371 TATGTATG
1 TATGTATG
6754379 TATGTATG
1 TATGTATG
6754387 TATGTATG
1 TATGTATG
6754395 TATGTATG
1 TATGTATG
6754403 TATGTATG
1 TATGTATG
6754411 TATGTATG
1 TATGTATG
6754419 TATGTATG
1 TATGTATG
6754427 TATGTATG
1 TATGTATG
6754435 TATGTATG
1 TATGTATG
6754443 TATGTATG
1 TATGTATG
6754451 TATGTATG
1 TATGTATG
6754459 TATGTATG
1 TATGTATG
6754467 TATGTATG
1 TATGTATG
6754475 TATGTATG
1 TATGTATG
6754483 TATGTATG
1 TATGTATG
6754491 TATGTATG
1 TATGTATG
6754499 TATGTATG
1 TATGTATG
6754507 TATGTATG
1 TATGTATG
* *
6754515 CATGCATG
1 TATGTATG
6754523 TATGTATG
1 TATGTATG
*
6754531 TATGCATG
1 TATGTATG
* *
6754539 CATGCATG
1 TATGTATG
* *
6754547 CATGCATG
1 TATGTATG
6754555 TATGTATG
1 TATGTATG
6754563 TATGTATG
1 TATGTATG
6754571 TATGTATG
1 TATGTATG
6754579 TATGTATG
1 TATGTATG
6754587 TATGTATG
1 TATGTATG
6754595 TATGTATG
1 TATGTATG
6754603 TATGTATG
1 TATGTATG
6754611 TATGTATG
1 TATGTATG
6754619 TATGTATG
1 TATGTATG
6754627 TATGTATG
1 TATGTATG
6754635 TATGTATG
1 TATGTATG
*
6754643 CATGTATG
1 TATGTATG
*
6754651 TATGCATG
1 TATGTATG
6754659 TATGTATG
1 TATGTATG
*
6754667 CATGTATG
1 TATGTATG
*
6754675 TATGCATG
1 TATGTATG
6754683 TATGTATG
1 TATGTATG
*
6754691 CATGTATG
1 TATGTATG
*
6754699 TATGCATG
1 TATGTATG
6754707 TATGTATG
1 TATGTATG
* *
6754715 CATGCATG
1 TATGTATG
*
6754723 TATGCATG
1 TATGTATG
*
6754731 CATGTATG
1 TATGTATG
* *
6754739 CATGCATG
1 TATGTATG
*
6754747 TATGCATG
1 TATGTATG
*
6754755 CATGTATG
1 TATGTATG
* *
6754763 CATGCATG
1 TATGTATG
*
6754771 TATGCATG
1 TATGTATG
*
6754779 CATGTATG
1 TATGTATG
* *
6754787 CATGCATG
1 TATGTATG
*
6754795 TATGCATG
1 TATGTATG
*
6754803 CATGTATG
1 TATGTATG
* *
6754811 CATGCATG
1 TATGTATG
*
6754819 TATGCATG
1 TATGTATG
6754827 TATGTATG
1 TATGTATG
* *
6754835 CATGCATG
1 TATGTATG
*
6754843 TATGCATG
1 TATGTATG
*
6754851 CATGTATG
1 TATGTATG
*
6754859 CATGTATG
1 TATGTATG
6754867 TATGTATG
1 TATGTATG
6754875 TATGTATG
1 TATGTATG
6754883 TATGTATG
1 TATGTATG
6754891 TATGTATG
1 TATGTATG
6754899 TATGTATG
1 TATGTATG
6754907 TATGTATG
1 TATGTATG
6754915 TATGTATG
1 TATGTATG
6754923 TATGTATG
1 TATGTATG
6754931 TATGTATG
1 TATGTATG
6754939 TATGTATG
1 TATGTATG
6754947 TATGTATG
1 TATGTATG
6754955 TATGTATG
1 TATGTATG
6754963 TATGTATG
1 TATGTATG
6754971 TATGTATG
1 TATGTATG
6754979 TATGTATG
1 TATGTATG
6754987 TATGTATG
1 TATGTATG
6754995 TATGTATG
1 TATGTATG
6755003 TATGTATG
1 TATGTATG
6755011 TATGTATG
1 TATGTATG
6755019 TATGTATG
1 TATGTATG
6755027 TATGTATG
1 TATGTATG
6755035 TATGTATG
1 TATGTATG
6755043 TATGTATG
1 TATGTATG
6755051 TATGTATG
1 TATGTATG
6755059 TATGTATG
1 TATGTATG
6755067 TATGTATG
1 TATGTATG
6755075 TATGTATG
1 TATGTATG
6755083 TATGTATG
1 TATGTATG
6755091 TATGTATG
1 TATGTATG
6755099 TATG--TG
1 TATGTATG
6755105 TATGTATG
1 TATGTATG
6755113 TATGTATG
1 TATGTATG
6755121 TATGTATG
1 TATGTATG
6755129 TATGTATG
1 TATGTATG
6755137 TATGTATG
1 TATGTATG
6755145 TATGTATG
1 TATGTATG
6755153 TATGTATG
1 TATGTATG
6755161 TATGTATG
1 TATGTATG
6755169 TATGTATG
1 TATGTATG
6755177 TATGTATG
1 TATGTATG
6755185 TATGTATG
1 TATGTATG
6755193 TATGTATG
1 TATGTATG
6755201 TATGTATG
1 TATGTATG
6755209 TATGTATG
1 TATGTATG
6755217 TATGTATG
1 TATGTATG
6755225 TATGTATG
1 TATGTATG
6755233 TATGTATG
1 TATGTATG
6755241 TATGTATG
1 TATGTATG
6755249 TATGTATG
1 TATGTATG
6755257 TATGTATG
1 TATGTATG
6755265 TATGTATG
1 TATGTATG
6755273 TATGTATG
1 TATGTATG
6755281 TATGTATG
1 TATGTATG
6755289 TATGTATG
1 TATGTATG
6755297 TATGTATG
1 TATGTATG
6755305 TATGTATG
1 TATGTATG
6755313 TATGTATG
1 TATGTATG
6755321 TATGTATG
1 TATGTATG
6755329 TATGTATG
1 TATGTATG
6755337 TATGTATG
1 TATGTATG
6755345 TATGTATG
1 TATGTATG
6755353 TATGTATG
1 TATGTATG
6755361 TATG--TG
1 TATGTATG
6755367 TATGTATG
1 TATGTATG
6755375 TATGTATG
1 TATGTATG
6755383 TATGTATG
1 TATGTATG
6755391 TATGTATG
1 TATGTATG
6755399 TATGTATG
1 TATGTATG
6755407 TATGTATG
1 TATGTATG
6755415 TATGTATG
1 TATGTATG
6755423 TATGTATG
1 TATGTATG
6755431 TATGTATG
1 TATGTATG
6755439 TATGTATG
1 TATGTATG
6755447 TATGTATG
1 TATGTATG
6755455 TATGTATG
1 TATGTATG
6755463 TATGTATG
1 TATGTATG
6755471 TATGTATG
1 TATGTATG
6755479 TATGTATG
1 TATGTATG
6755487 TATGTATG
1 TATGTATG
6755495 TATGTATG
1 TATGTATG
6755503 TATGTATG
1 TATGTATG
6755511 TATGTATG
1 TATGTATG
6755519 TATGTATG
1 TATGTATG
6755527 TATGTATG
1 TATGTATG
6755535 TATGTATG
1 TATGTATG
6755543 TATGTATG
1 TATGTATG
6755551 TATGTATG
1 TATGTATG
6755559 TATGTATG
1 TATGTATG
6755567 TATGTATG
1 TATGTATG
6755575 TATGTATG
1 TATGTATG
6755583 TATGTATG
1 TATGTATG
6755591 TATGTATG
1 TATGTATG
6755599 TATGTATG
1 TATGTATG
6755607 TATGTATG
1 TATGTATG
6755615 TATGTATG
1 TATGTATG
6755623 TATGTATG
1 TATGTATG
6755631 TATGTATG
1 TATGTATG
6755639 TATGTATG
1 TATGTATG
6755647 TATGTATG
1 TATGTATG
6755655 TATGTATG
1 TATGTATG
6755663 TATGTATG
1 TATGTATG
6755671 TATGTATG
1 TATGTATG
6755679 TATGTATG
1 TATGTATG
6755687 TATGTATG
1 TATGTATG
6755695 TATGTATG
1 TATGTATG
6755703 TATGTATG
1 TATGTATG
6755711 TATGTATG
1 TATGTATG
6755719 TATGTATG
1 TATGTATG
6755727 TATGTATG
1 TATGTATG
6755735 TATGTATG
1 TATGTATG
6755743 TATGTATG
1 TATGTATG
6755751 TATGTATG
1 TATGTATG
6755759 TATGTATG
1 TATGTATG
6755767 TATGTATG
1 TATGTATG
6755775 TATGTATG
1 TATGTATG
6755783 TATGTATG
1 TATGTATG
6755791 TATGTATG
1 TATGTATG
6755799 TATGTATG
1 TATGTATG
6755807 TATGTATG
1 TATGTATG
6755815 TATGTATG
1 TATGTATG
6755823 TATGTATG
1 TATGTATG
6755831 TATGTATG
1 TATGTATG
6755839 TATGTATG
1 TATGTATG
6755847 TATGTATG
1 TATGTATG
6755855 TATGTATG
1 TATGTATG
*
6755863 GATGTATG
1 TATGTATG
*
6755871 CATGTATG
1 TATGTATG
* *
6755879 CATGCATG
1 TATGTATG
*
6755887 TATGCATG
1 TATGTATG
*
6755895 TATGCATG
1 TATGTATG
6755903 TATGTATG
1 TATGTATG
6755911 TATGTATG
1 TATGTATG
6755919 TATGTATG
1 TATGTATG
6755927 TATGTATG
1 TATGTATG
6755935 TATGTATG
1 TATGTATG
6755943 TATGTATG
1 TATGTATG
6755951 TATGTATG
1 TATGTATG
6755959 TATGTATG
1 TATGTATG
6755967 TATGTATG
1 TATGTATG
6755975 TATGTATG
1 TATGTATG
*
6755983 CATGTATG
1 TATGTATG
*
6755991 CATGTATG
1 TATGTATG
*
6755999 CATGTATG
1 TATGTATG
*
6756007 CATGTATG
1 TATGTATG
*
6756015 CATGTATG
1 TATGTATG
*
6756023 CATGTATG
1 TATGTATG
*
6756031 CATGTATG
1 TATGTATG
*
6756039 CATGTATG
1 TATGTATG
*
6756047 CATGTATG
1 TATGTATG
* *
6756055 CATGTATA
1 TATGTATG
6756063 TATGTATG
1 TATGTATG
6756071 TATGTATG
1 TATGTATG
6756079 TATGTATG
1 TATGTATG
6756087 TATGTATG
1 TATGTATG
6756095 TATGTATG
1 TATGTATG
6756103 TATGTATG
1 TATGTATG
6756111 TATGTATG
1 TATGTATG
6756119 TATGTATG
1 TATGTATG
6756127 TATGTATG
1 TATGTATG
6756135 TATGTATG
1 TATGTATG
6756143 TATGTATG
1 TATGTATG
6756151 TATGTATG
1 TATGTATG
6756159 TATGTATG
1 TATGTATG
6756167 TATGTATG
1 TATGTATG
6756175 TATGTATG
1 TATGTATG
6756183 TATGTATG
1 TATGTATG
6756191 TATGTATG
1 TATGTATG
6756199 TATGTATG
1 TATGTATG
6756207 TATGTATG
1 TATGTATG
6756215 TATGTATG
1 TATGTATG
* *
6756223 TATGCATT
1 TATGTATG
*
6756231 TATGCATG
1 TATGTATG
6756239 TAT
1 TAT
6756242 CAAGCACAGA
Statistics
Matches: 2192, Mismatches: 59, Indels: 8
0.97 0.03 0.00
Matches are distributed among these distances:
6 12 0.01
8 2180 0.99
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (8 bp):
TATGTATG
Found at i:6759735 original size:39 final size:37
Alignment explanation
Indices: 6759692--6759796 Score: 94
Period size: 37 Copynumber: 2.8 Consensus size: 37
6759682 ATTTTGTTTC
*
6759692 TTAATGTTTTTATTACTTAATTTTCTTAATGTTTAGTAT
1 TTAATGTTTTTATTA-TTAATTTTATTAATGTTTAGT-T
* * *
6759731 TTAATGTTTCTATTTAATTATTTTTGTT-A--TTTAGTT
1 TTAATGTTTTTA-TT-ATTAATTTTATTAATGTTTAGTT
6759767 TATAATGTTTTTA-T-TTAATTTTATTAATGT
1 T-TAATGTTTTTATTATTAATTTTATTAATGT
6759797 ATTTATTGTT
Statistics
Matches: 54, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
33 9 0.17
34 1 0.02
35 1 0.02
36 3 0.06
37 16 0.30
39 12 0.22
40 11 0.20
41 1 0.02
ACGTcount: A:0.26, C:0.03, G:0.08, T:0.64
Consensus pattern (37 bp):
TTAATGTTTTTATTATTAATTTTATTAATGTTTAGTT
Found at i:6759794 original size:22 final size:20
Alignment explanation
Indices: 6759757--6759803 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
6759747 ATTATTTTTG
*
6759757 TTATTTAGTTTATAATGTTT
1 TTATTTAGTTTATAATGTAT
*
6759777 TTATTTAATTTTATTAATGTAT
1 TTATTT-AGTTTA-TAATGTAT
6759799 TTATT
1 TTATT
6759804 GTTTCTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 6 0.26
21 5 0.22
22 12 0.52
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (20 bp):
TTATTTAGTTTATAATGTAT
Found at i:6761064 original size:73 final size:73
Alignment explanation
Indices: 6760940--6761093 Score: 281
Period size: 73 Copynumber: 2.1 Consensus size: 73
6760930 AAACCCCAAG
6760940 AATATGTATCTTTACCTTCAACAAGGGAAAAAGCAAATGGAAGAATGTTGTGAATATCATATTGG
1 AATA-GTATCTTTACCTTCAACAAGGGAAAAAGCAAATGGAAGAATGTTGTGAATATCATATTGG
6761005 ACAACGTCC
65 ACAACGTCC
* *
6761014 AATAGTATCTTTACCTTCAACACGGGAAAAAGCAAATGGATGAATGTTGTGAATATCATATTGGA
1 AATAGTATCTTTACCTTCAACAAGGGAAAAAGCAAATGGAAGAATGTTGTGAATATCATATTGGA
6761079 CAACGTCC
66 CAACGTCC
6761087 AATAGTA
1 AATAGTA
6761094 AAACTTGCTT
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
73 74 0.95
74 4 0.05
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (73 bp):
AATAGTATCTTTACCTTCAACAAGGGAAAAAGCAAATGGAAGAATGTTGTGAATATCATATTGGA
CAACGTCC
Found at i:6765694 original size:2 final size:2
Alignment explanation
Indices: 6765687--6765718 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
6765677 AGAAACATTA
6765687 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6765719 TATTAATGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6766565 original size:16 final size:17
Alignment explanation
Indices: 6766544--6766576 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
6766534 ATGTATATTC
6766544 AATTTTTT-AATAATTT
1 AATTTTTTAAATAATTT
6766560 AATTTTTTAAATAATTT
1 AATTTTTTAAATAATTT
6766577 TTTAATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
AATTTTTTAAATAATTT
Found at i:6766576 original size:12 final size:13
Alignment explanation
Indices: 6766544--6766592 Score: 55
Period size: 12 Copynumber: 3.6 Consensus size: 13
6766534 ATGTATATTC
6766544 AATTTTTTAATAATTT
1 AATTTTTTAAT-A--T
6766560 AATTTTTTAA-AT
1 AATTTTTTAATAT
*
6766572 AATTTTTTAATTT
1 AATTTTTTAATAT
6766585 AATTTTTT
1 AATTTTTT
6766593 TGAATATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
12 11 0.35
13 9 0.29
14 1 0.03
16 10 0.32
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (13 bp):
AATTTTTTAATAT
Found at i:6766587 original size:13 final size:13
Alignment explanation
Indices: 6766554--6766592 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
6766544 AATTTTTTAA
6766554 TAATTTAATTTTT
1 TAATTTAATTTTT
*
6766567 TAA-ATAATTTTT
1 TAATTTAATTTTT
6766579 TAATTTAATTTTT
1 TAATTTAATTTTT
6766592 T
1 T
6766593 TGAATATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
TAATTTAATTTTT
Found at i:6766601 original size:25 final size:24
Alignment explanation
Indices: 6766554--6766611 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 24
6766544 AATTTTTTAA
6766554 TAATTTAATTTTTTAAATAATTTTT
1 TAATTTAATTTTTTAAATAA-TTTT
*
6766579 TAATTTAATTTTTTTGAAT-ATTTT
1 TAATTTAA-TTTTTTAAATAATTTT
6766603 TATATTTAA
1 TA-ATTTAA
6766612 AATTGAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 6 0.20
25 15 0.50
26 9 0.30
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (24 bp):
TAATTTAATTTTTTAAATAATTTT
Found at i:6770893 original size:21 final size:21
Alignment explanation
Indices: 6770860--6770955 Score: 84
Period size: 21 Copynumber: 4.6 Consensus size: 21
6770850 ACCACTCCTT
* *
6770860 AAGGATCACATATATATTCCA
1 AAGGACCACATATATATCCCA
* * * *
6770881 AAGGACCAAATATGTGTCCCG
1 AAGGACCACATATATATCCCA
* * * *
6770902 AAGAACCGCATATATGTTCCA
1 AAGGACCACATATATATCCCA
**
6770923 AAGGATTACATATATATCCCA
1 AAGGACCACATATATATCCCA
6770944 AAGGACCACATA
1 AAGGACCACATA
6770956 GAACCCTCGA
Statistics
Matches: 55, Mismatches: 20, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.23
Consensus pattern (21 bp):
AAGGACCACATATATATCCCA
Found at i:6773762 original size:12 final size:12
Alignment explanation
Indices: 6773742--6773772 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
6773732 ATGAGGAAAC
6773742 ACAAAAAAAAAG
1 ACAAAAAAAAAG
*
6773754 ACAATAAAAAAG
1 ACAAAAAAAAAG
6773766 ACAAAAA
1 ACAAAAA
6773773 CGAAAGAGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.81, C:0.10, G:0.06, T:0.03
Consensus pattern (12 bp):
ACAAAAAAAAAG
Found at i:6779775 original size:20 final size:21
Alignment explanation
Indices: 6779750--6779826 Score: 70
Period size: 23 Copynumber: 3.7 Consensus size: 21
6779740 ATAGGGCAGA
6779750 GGGAATCGATA-CCTTTGAAG
1 GGGAATCGATACCCTTTGAAG
*
6779770 GGGAATCGATTACCCCTTTGAAT
1 GGGAATCGA-TA-CCCTTTGAAG
* * *
6779793 GGGAACCGATTCCCCCTTG-A-
1 GGGAATCGA-TACCCTTTGAAG
6779813 GGGAATCGATACCC
1 GGGAATCGATACCC
6779827 CTAATGGGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
19 4 0.08
20 17 0.35
21 3 0.06
22 6 0.12
23 18 0.38
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (21 bp):
GGGAATCGATACCCTTTGAAG
Found at i:6779827 original size:20 final size:22
Alignment explanation
Indices: 6779750--6779828 Score: 85
Period size: 20 Copynumber: 3.7 Consensus size: 22
6779740 ATAGGGCAGA
6779750 GGGAATCGATA--CCTTTGAAG
1 GGGAATCGATACCCCTTTGAAG
*
6779770 GGGAATCGATTACCCCTTTGAAT
1 GGGAATCGA-TACCCCTTTGAAG
* * *
6779793 GGGAACCGATTCCCCCTTG-A-
1 GGGAATCGATACCCCTTTGAAG
6779813 GGGAATCGATACCCCT
1 GGGAATCGATACCCCT
6779829 AATGGGTTCT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
20 22 0.45
21 3 0.06
22 8 0.16
23 16 0.33
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.24
Consensus pattern (22 bp):
GGGAATCGATACCCCTTTGAAG
Found at i:6786519 original size:2 final size:2
Alignment explanation
Indices: 6786512--6786549 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
6786502 ACTGATTTCA
6786512 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6786550 GGTCACTTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6787477 original size:20 final size:19
Alignment explanation
Indices: 6787452--6787505 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
6787442 ACGAAATAAA
6787452 AATCGCAACGCGATCTCCAG
1 AATCGCAACGCGATC-CCAG
** *
6787472 AATCGCAAATCAGTTCCCAG
1 AATCGCAACGC-GATCCCAG
6787492 AATCGCAACGCGAT
1 AATCGCAACGCGAT
6787506 TATGAAGAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 2 0.07
20 22 0.81
21 3 0.11
ACGTcount: A:0.33, C:0.31, G:0.19, T:0.17
Consensus pattern (19 bp):
AATCGCAACGCGATCCCAG
Found at i:6787516 original size:21 final size:21
Alignment explanation
Indices: 6787490--6787587 Score: 69
Period size: 21 Copynumber: 4.7 Consensus size: 21
6787480 ATCAGTTCCC
6787490 AGAATCGCAACGCGATTATGA
1 AGAATCGCAACGCGATTATGA
*
6787511 AGAATCGCAATGCGA-TA-GTA
1 AGAATCGCAACGCGATTATG-A
** * **
6787531 CA-AATTCGCATTGCGATTTTCC
1 -AGAA-TCGCAACGCGATTATGA
* *
6787553 AGAATAGCAACGCGAATATGA
1 AGAATCGCAACGCGATTATGA
6787574 A-AATCGCAACGCGA
1 AGAATCGCAACGCGA
6787588 ACATATAAAT
Statistics
Matches: 58, Mismatches: 13, Indels: 13
0.69 0.15 0.15
Matches are distributed among these distances:
19 1 0.02
20 17 0.29
21 37 0.64
22 3 0.05
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.20
Consensus pattern (21 bp):
AGAATCGCAACGCGATTATGA
Found at i:6787584 original size:20 final size:20
Alignment explanation
Indices: 6787559--6788088 Score: 330
Period size: 20 Copynumber: 26.3 Consensus size: 20
6787549 TTCCAGAATA
** *
6787559 GCAACGCGAATATGAAAATC
1 GCAACGCGAATCCGTAAATC
**
6787579 GCAACGCGAA-CATATAAATC
1 GCAACGCGAATC-CGTAAATC
* * * *
6787599 ACAACGCGATTCTG-ACTATC
1 GCAACGCGAATCCGTA-AATC
* *
6787619 GCAACGAGTATCCGTAAAATC
1 GCAACGCGAATCCGT-AAATC
*
6787640 GCAACGCGTATCCGTAAATC
1 GCAACGCGAATCCGTAAATC
* *
6787660 GCAATGAC-AATACGTAAAATC
1 GCAACG-CGAATCCGT-AAATC
* *
6787681 ACAACGCGTATCCGTAAATC
1 GCAACGCGAATCCGTAAATC
* *
6787701 GCAACGAGAATACGTAAATC
1 GCAACGCGAATCCGTAAATC
* *
6787721 GCAACGCGTATCTGTAAATC
1 GCAACGCGAATCCGTAAATC
* *
6787741 GCAACGAGAATACGTAAATC
1 GCAACGCGAATCCGTAAATC
* *
6787761 GCAATGCGTATCCGTAAATC
1 GCAACGCGAATCCGTAAATC
* *
6787781 GCAACAAC-AATACGTAAAATC
1 GCAAC-GCGAATCCGT-AAATC
*
6787802 GCAACGCGTATCCGTAAATC
1 GCAACGCGAATCCGTAAATC
*
6787822 GCAACGCG-AT-CGATAATTC
1 GCAACGCGAATCCG-TAAATC
*
6787841 GCAACGCGATCTCCGGT--ATC
1 GCAACGCGA-ATCC-GTAAATC
** ** *
6787861 GCAAATCAGTTTCC--AGATTC
1 GCAACGC-GAATCCGTA-AATC
* * *
6787881 GCAACGCGATTCTG-ACTATC
1 GCAACGCGAATCCGTA-AATC
** * *
6787901 GCATTGCGATTTCC-CAAATTC
1 GCAACGCGA-ATCCGTAAA-TC
*** * *
6787922 GCGTTGCGATTTTCC-TAATTC
1 GCAACGCGA--ATCCGTAAATC
*
6787943 GCAACGCGAATACGTAAATC
1 GCAACGCGAATCCGTAAATC
*
6787963 GCAACGCGAATACGTAAATC
1 GCAACGCGAATCCGTAAATC
*
6787983 GCAACGCGAATACGTAAATC
1 GCAACGCGAATCCGTAAATC
*
6788003 GCAACGCGAATACGTAAATC
1 GCAACGCGAATCCGTAAATC
*
6788023 GCAACGCGAATACGTAAATC
1 GCAACGCGAATCCGTAAATC
*
6788043 GCAACGCGAATCTGTAAATC
1 GCAACGCGAATCCGTAAATC
* *
6788063 GCAATGCGAATCTGTAAATC
1 GCAACGCGAATCCGTAAATC
6788083 GCAACG
1 GCAACG
6788089 AGATTCTGAC
Statistics
Matches: 408, Mismatches: 76, Indels: 52
0.76 0.14 0.10
Matches are distributed among these distances:
18 2 0.00
19 22 0.05
20 300 0.74
21 73 0.18
22 10 0.02
23 1 0.00
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.21
Consensus pattern (20 bp):
GCAACGCGAATCCGTAAATC
Found at i:6787647 original size:81 final size:81
Alignment explanation
Indices: 6787559--6787827 Score: 296
Period size: 81 Copynumber: 3.3 Consensus size: 81
6787549 TTCCAGAATA
* * * * * *
6787559 GCAACGCGAATATGAAAATCGCAACG-CGA-ACATATAAATCACAACGCG-ATTC-TGACTATCG
1 GCAACGCGTATCTGTAAATCGCAACGACAATACATA-AAATCACAACGCGTATCCGT-A-AATCG
* *
6787620 CAACGAGTATCCGTAAAATC
63 CAACGAGAATACGT-AAATC
* * *
6787640 GCAACGCGTATCCGTAAATCGCAATGACAATACGTAAAATCACAACGCGTATCCGTAAATCGCAA
1 GCAACGCGTATCTGTAAATCGCAACGACAATACATAAAATCACAACGCGTATCCGTAAATCGCAA
6787705 CGAGAATACGTAAATC
66 CGAGAATACGTAAATC
* * * *
6787721 GCAACGCGTATCTGTAAATCGCAACGAGAATACGT-AAATCGCAATGCGTATCCGTAAATCGCAA
1 GCAACGCGTATCTGTAAATCGCAACGACAATACATAAAATCACAACGCGTATCCGTAAATCGCAA
* *
6787785 CAACAATACGTAAAATC
66 CGAGAATACGT-AAATC
*
6787802 GCAACGCGTATCCGTAAATCGCAACG
1 GCAACGCGTATCTGTAAATCGCAACG
6787828 CGATCGATAA
Statistics
Matches: 164, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
80 36 0.22
81 88 0.54
82 31 0.19
83 8 0.05
84 1 0.01
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.19
Consensus pattern (81 bp):
GCAACGCGTATCTGTAAATCGCAACGACAATACATAAAATCACAACGCGTATCCGTAAATCGCAA
CGAGAATACGTAAATC
Found at i:6787731 original size:40 final size:40
Alignment explanation
Indices: 6787616--6788088 Score: 365
Period size: 40 Copynumber: 11.7 Consensus size: 40
6787606 GATTCTGACT
* *
6787616 ATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGT-AAATCGCAACGCGTATCCGTAA
* * *
6787657 ATCGCAATGACAATACGTAAAATCACAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGT-AAATCGCAACGCGTATCCGTAA
*
6787698 ATCGCAACGAGAATACGTAAATCGCAACGCGTATCTGTAA
1 ATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAA
*
6787738 ATCGCAACGAGAATACGTAAATCGCAATGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAA
* *
6787778 ATCGCAACAACAATACGTAAAATCGCAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGT-AAATCGCAACGCGTATCCGTAA
* * *
6787819 ATCGCAACGCG-AT-CGATAATTCGCAACGCGATCTCCGGT--
1 ATCGCAACGAGAATACG-TAAATCGCAACGCG-TATCC-GTAA
* * * * * *
6787858 ATCGCAAATC-AG-TTTC-CAGATTCGCAACGCG-ATTC-TGACT
1 ATCGC-AA-CGAGAATACGTA-AATCGCAACGCGTATCCGT-A-A
** * * * ** *** *
6787898 ATCGCATTGCGATTTCCCAAATTCGCGTTGCGATTTTCC-TAA
1 ATCGCAACGAGAATACGTAAA-TCGCAACGCG--TATCCGTAA
* * * *
6787940 TTCGCAACGCGAATACGTAAATCGCAACGCGAATACGTAA
1 ATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAA
* * *
6787980 ATCGCAACGCGAATACGTAAATCGCAACGCGAATACGTAA
1 ATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAA
* * *
6788020 ATCGCAACGCGAATACGTAAATCGCAACGCGAATCTGTAA
1 ATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAA
* *
6788060 ATCGCAATGCGAAT-CTGTAAATCGCAACG
1 ATCGCAACGAGAATAC-GTAAATCGCAACG
6788089 AGATTCTGAC
Statistics
Matches: 360, Mismatches: 51, Indels: 43
0.79 0.11 0.09
Matches are distributed among these distances:
36 1 0.00
38 2 0.01
39 25 0.07
40 213 0.59
41 101 0.28
42 14 0.04
43 1 0.00
44 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (40 bp):
ATCGCAACGAGAATACGTAAATCGCAACGCGTATCCGTAA
Found at i:6787928 original size:21 final size:21
Alignment explanation
Indices: 6787899--6787945 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
6787889 ATTCTGACTA
6787899 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
6787920 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
6787941 TCGCA
1 TCGCA
6787946 ACGCGAATAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:6788979 original size:24 final size:24
Alignment explanation
Indices: 6788928--6788981 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
6788918 GTATTCGAAA
*
6788928 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCAGAC
* *
6788952 TTTGATCTTGGTCAATACTCAGAT
1 TTTGATCTTGGTCAATACCCAGAC
6788976 TTTGAT
1 TTTGAT
6788982 GATTTTTCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.22, C:0.19, G:0.19, T:0.41
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCAGAC
Found at i:6791419 original size:20 final size:20
Alignment explanation
Indices: 6791394--6791487 Score: 145
Period size: 20 Copynumber: 4.7 Consensus size: 20
6791384 GACATTCATT
6791394 TGACTATCGCAACGC-GAATA
1 TGACTATCGCAACGCGGAA-A
*
6791414 TGACTATCGCAACACGGAAA
1 TGACTATCGCAACGCGGAAA
* *
6791434 TGACTATCGCAATGCGGAAT
1 TGACTATCGCAACGCGGAAA
6791454 TGACTATCGCAACGCGGAAA
1 TGACTATCGCAACGCGGAAA
6791474 TGACTATCGCAACG
1 TGACTATCGCAACG
6791488 AGAGAATCGC
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
20 64 0.96
21 3 0.04
ACGTcount: A:0.34, C:0.24, G:0.22, T:0.19
Consensus pattern (20 bp):
TGACTATCGCAACGCGGAAA
Found at i:6791547 original size:34 final size:33
Alignment explanation
Indices: 6791459--6791554 Score: 138
Period size: 33 Copynumber: 2.8 Consensus size: 33
6791449 GGAATTGACT
* **
6791459 ATCGCAACGCGGAAATGACTATCGCAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
*
6791493 ATCGCAATGCGAAATGAAAATCGCAACGAGTGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
6791526 ATCGCAATGCGAAAATGAAAATCGCAACG
1 ATCGCAATGCG-AAATGAAAATCGCAACG
6791555 CGAAATTAGT
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
33 31 0.54
34 26 0.46
ACGTcount: A:0.42, C:0.21, G:0.24, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:6791550 original size:20 final size:19
Alignment explanation
Indices: 6791492--6791560 Score: 76
Period size: 19 Copynumber: 3.8 Consensus size: 19
6791482 GCAACGAGAG
6791492 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
6791511 AATCGCAA--CG-AGTG--
1 AATCGCAATGCGAAATGAA
6791525 AATCGCAATGCGAAAATGAA
1 AATCGCAATGCG-AAATGAA
*
6791545 AATCGCAACGCGAAAT
1 AATCGCAATGCGAAAT
6791561 TAGTTTCGCG
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
14 8 0.20
16 5 0.12
17 2 0.05
18 3 0.07
19 12 0.29
20 11 0.27
ACGTcount: A:0.45, C:0.19, G:0.22, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:6791626 original size:33 final size:33
Alignment explanation
Indices: 6791569--6791653 Score: 134
Period size: 33 Copynumber: 2.5 Consensus size: 33
6791559 ATTAGTTTCG
6791569 CGTTGCGATTTTCATTTTCGCATTGCGATTCACT
1 CGTTGCGATTTTCA-TTTCGCATTGCGATTCACT
*
6791603 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCACT
**
6791636 CGTTGCGATAGTCATTTC
1 CGTTGCGATTTTCATTTC
6791654 ATCGTTGCGA
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
33 34 0.71
34 14 0.29
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.44
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCACT
Found at i:6791660 original size:20 final size:21
Alignment explanation
Indices: 6791635--6791688 Score: 94
Period size: 20 Copynumber: 2.7 Consensus size: 21
6791625 TGCGATTCTC
6791635 TCGTTGCGATAGTCATTT-CA
1 TCGTTGCGATAGTCATTTCCA
6791655 TCGTTGCGATAGTCATTTCCA
1 TCGTTGCGATAGTCATTTCCA
6791676 -CGTTGCGATAGTC
1 TCGTTGCGATAGTC
6791689 TGTTTTGCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 31 0.94
21 2 0.06
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (21 bp):
TCGTTGCGATAGTCATTTCCA
Found at i:6791805 original size:14 final size:14
Alignment explanation
Indices: 6791786--6791822 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
6791776 CATCAATTAA
6791786 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
6791800 ACAAATCATCTTTT
1 ACAAATCAACATTT
6791814 ACAAATCAA
1 ACAAATCAA
6791823 TTAAATAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:6793274 original size:42 final size:42
Alignment explanation
Indices: 6793167--6793278 Score: 111
Period size: 42 Copynumber: 2.7 Consensus size: 42
6793157 TCTAGAATGT
* * *
6793167 TGGGAG-GGACCTCTTCAACGATGACAGTGGCCTCTTGAACGG
1 TGGGAGAGG-CCTCTTGAACGATGACAGGGGCCTCTTGAACGA
* * * ** *
6793209 TGGGAGGGGACTTTTGAGGGATGATAGGGGCCTCTTGAACGA
1 TGGGAGAGGCCTCTTGAACGATGACAGGGGCCTCTTGAACGA
6793251 TAGGG-GAGGCCTCTTGAACGATGACAGG
1 T-GGGAGAGGCCTCTTGAACGATGACAGG
6793279 TGAGTCGGGC
Statistics
Matches: 54, Mismatches: 14, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
42 49 0.91
43 5 0.09
ACGTcount: A:0.22, C:0.18, G:0.38, T:0.21
Consensus pattern (42 bp):
TGGGAGAGGCCTCTTGAACGATGACAGGGGCCTCTTGAACGA
Found at i:6793789 original size:20 final size:20
Alignment explanation
Indices: 6793766--6793804 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6793756 AAATCACAAC
6793766 GCGAAAATGACTATCGCAAT
1 GCGAAAATGACTATCGCAAT
**
6793786 GCGAATTTGACTATCGCAA
1 GCGAAAATGACTATCGCAA
6793805 CGAGAGAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.23
Consensus pattern (20 bp):
GCGAAAATGACTATCGCAAT
Found at i:6793861 original size:19 final size:19
Alignment explanation
Indices: 6793839--6793901 Score: 83
Period size: 19 Copynumber: 3.3 Consensus size: 19
6793829 AAATCGCAAC
*
6793839 GCGATTATAGTTTCGCGTT
1 GCGATTTTAGTTTCGCGTT
*
6793858 GCGATTTTGGTTTCGCGTT
1 GCGATTTTAGTTTCGCGTT
6793877 GCGATTTTCA-TTTCGCGTT
1 GCGATTTT-AGTTTCGCGTT
*
6793896 GTGATT
1 GCGATT
6793902 CTCTCGTTGC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
19 39 1.00
ACGTcount: A:0.11, C:0.16, G:0.27, T:0.46
Consensus pattern (19 bp):
GCGATTTTAGTTTCGCGTT
Found at i:6793939 original size:19 final size:17
Alignment explanation
Indices: 6793849--6793931 Score: 73
Period size: 19 Copynumber: 4.8 Consensus size: 17
6793839 GCGATTATAG
**
6793849 TTTCGCGTTGCGATTTTGG
1 TTTCGCGTTGCGA--TTCA
6793868 TTTCGCGTTGCGATTTTCA
1 TTTCGCGTTGCGA--TTCA
*
6793887 TTTCGCGTTGTGATTC-
1 TTTCGCGTTGCGATTCA
*
6793903 --TCTCGTTGCGATTCA
1 TTTCGCGTTGCGATTCA
6793918 TTTCGCGTTGCGAT
1 TTTCGCGTTGCGAT
6793932 AGTCATTTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
14 12 0.22
17 14 0.25
19 29 0.53
ACGTcount: A:0.08, C:0.20, G:0.25, T:0.46
Consensus pattern (17 bp):
TTTCGCGTTGCGATTCA
Found at i:6794165 original size:94 final size:94
Alignment explanation
Indices: 6794019--6794398 Score: 647
Period size: 94 Copynumber: 4.1 Consensus size: 94
6794009 ATGGATTGCA
* *
6794019 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCAGAGTATTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
6794083 TTAGCAGAATTGGCAGCAACCGAACAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
*
6794112 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAAT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
6794177 TTAGCAGAATTGGCAGCAACCAAACAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
* *
6794206 TTACTTTCAACCAAAAGACAAAACAAAGACAAATATTAACTTCATAGTGTTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
6794271 TTAGCAGAATTGGCAGCAACCGAATAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
*
6794300 TTAC-TTCAACCAAAAGACAAAACAAAAGACAAATACTAACTTCACAGTGTTAAAGAATAAACAG
1 TTACTTTCAACCAAAAGACAAAAC-AAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAG
* *
6794364 TTTAGCAGTATTGGCAGCAACCGAATAAAT
65 TTTAGCAGAATTGGCAGCAACCGAACAAAT
6794394 TTACT
1 TTACT
6794399 AAGCAATCTA
Statistics
Matches: 271, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
93 23 0.08
94 248 0.92
ACGTcount: A:0.48, C:0.19, G:0.12, T:0.22
Consensus pattern (94 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
TTAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:6796116 original size:19 final size:19
Alignment explanation
Indices: 6796088--6796160 Score: 84
Period size: 19 Copynumber: 4.1 Consensus size: 19
6796078 TCTTTTGGTT
6796088 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
6796107 GAAATTAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
6796124 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
6796140 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
6796159 GA
1 GA
6796161 TATTGGTTTC
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
14 9 0.20
15 1 0.02
16 2 0.05
17 2 0.05
18 1 0.02
19 29 0.66
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:6796235 original size:20 final size:20
Alignment explanation
Indices: 6796187--6796237 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
6796177 CGATTCTCTC
** *
6796187 GTTGCGATAGTCATTTTCGT
1 GTTGCGATTTTCATTTTCAT
6796207 GTTGCGATTTTCATTTTCAT
1 GTTGCGATTTTCATTTTCAT
6796227 GTTGCGATTTT
1 GTTGCGATTTT
6796238 AAGTTTAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.14, C:0.14, G:0.22, T:0.51
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTCAT
Found at i:6796821 original size:20 final size:20
Alignment explanation
Indices: 6796796--6797070 Score: 136
Period size: 20 Copynumber: 13.6 Consensus size: 20
6796786 TTTTAAAAAT
6796796 CGCGTTGCGATTTACAGATA
1 CGCGTTGCGATTTACAGATA
6796816 CGCGTTGCGATTTTAC-G-TA
1 CGCGTTGCGA-TTTACAGATA
* *
6796835 TTGTCGTTGTGATTTACAGATA
1 -CG-CGTTGCGATTTACAGATA
* *
6796857 CGCATTGCGATTTAC-GTATT
1 CGCGTTGCGATTTACAG-ATA
* * *
6796877 CTCGTTGTGATTTACATATA
1 CGCGTTGCGATTTACAGATA
*
6796897 CGCGTTGCGATTTAC-GTATT
1 CGCGTTGCGATTTACAG-ATA
* *
6796917 CTCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACAGATA
* * **
6796937 TGTGTTATGATTTTAC-G-TA
1 CGCGTTGCGA-TTTACAGATA
* * *
6796956 TTGTCGTTGTGATTTACGGATA
1 -CG-CGTTGCGATTTACAGATA
*
6796978 CGCGTTGCGATTTTACGGATA
1 CGCGTTGCGA-TTTACAGATA
* *
6796999 CTCGTTGCGATAGT-CAGA-A
1 CGCGTTGCGAT-TTACAGATA
* * * *
6797018 TCGCATTGTGATTTATATG-TT
1 -CGCGTTGCGATTTACA-GATA
* * *
6797039 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACAGATA
6797059 CGCGTTGCGATT
1 CGCGTTGCGATT
6797071 CTGAAAAATC
Statistics
Matches: 194, Mismatches: 40, Indels: 42
0.70 0.14 0.15
Matches are distributed among these distances:
19 7 0.04
20 134 0.69
21 49 0.25
22 4 0.02
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (20 bp):
CGCGTTGCGATTTACAGATA
Found at i:6796830 original size:40 final size:40
Alignment explanation
Indices: 6796793--6796994 Score: 192
Period size: 40 Copynumber: 5.0 Consensus size: 40
6796783 GCGTTTTAAA
*
6796793 AATCGCGTTGCGATTTACAGATACGCGTTGCGATTTTACG
1 AATCGCGTTGTGATTTACAGATACGCGTTGCGATTTTACG
* * *
6796833 TATTGTCGTTGTGATTTACAGATACGCATTGCGA-TTTACG
1 AATCG-CGTTGTGATTTACAGATACGCGTTGCGATTTTACG
* * *
6796873 TATTCTCGTTGTGATTTACATATACGCGTTGCGA-TTTACG
1 -AATCGCGTTGTGATTTACAGATACGCGTTGCGATTTTACG
* * * * * * **
6796913 TATTCTCGTTGCGATTTACGGATATGTGTTATGATTTTACG
1 -AATCGCGTTGTGATTTACAGATACGCGTTGCGATTTTACG
* * *
6796954 TATTGTCGTTGTGATTTACGGATACGCGTTGCGATTTTACG
1 AATCG-CGTTGTGATTTACAGATACGCGTTGCGATTTTACG
6796995 GATACTCGTT
Statistics
Matches: 132, Mismatches: 26, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
40 69 0.52
41 63 0.48
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (40 bp):
AATCGCGTTGTGATTTACAGATACGCGTTGCGATTTTACG
Found at i:6796843 original size:41 final size:41
Alignment explanation
Indices: 6796798--6797009 Score: 275
Period size: 41 Copynumber: 5.2 Consensus size: 41
6796788 TTAAAAATCG
*
6796798 CGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCT
* *
6796839 CGTTGTGATTTACAGATACGCATTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCT
* *
6796879 CGTTGTGATTTACATATACGCGTTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCT
* * * ** *
6796919 CGTTGCGATTTACGGATATGTGTTATGATTTTACGTATTGT
1 CGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCT
* * * *
6796960 CGTTGTGATTTACGGATACGCGTTGCGATTTTACGGATACT
1 CGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCT
6797001 CGTTGCGAT
1 CGTTGCGAT
6797010 AGTCAGAATC
Statistics
Matches: 148, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
40 70 0.47
41 78 0.53
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.41
Consensus pattern (41 bp):
CGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCT
Found at i:6797045 original size:81 final size:81
Alignment explanation
Indices: 6796795--6797070 Score: 265
Period size: 81 Copynumber: 3.4 Consensus size: 81
6796785 GTTTTAAAAA
* *
6796795 TCGCGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTGTCGTTGTGATTTACAG-ATACG
1 TCGCGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCTCGTTGCGATTTACAGAAT-CG
* ** *
6796859 CATTGCGATTTACGTAT
65 CATTGTGATTTATATGT
* * * *
6796876 TCTCGTTGTGATTTACATATACGCGTTGCGA-TTTACGTATTCTCGTTGCGATTTACGGATAT-G
1 TCGCGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCTCGTTGCGATTTACAGA-ATCG
** * *
6796939 TGTTATGATTT-TACGT
65 CATTGTGATTTATATGT
* * * * * *
6796955 ATTGTCGTTGTGATTTACGGATACGCGTTGCGATTTTACGGATACTCGTTGCGATAGT-CAGAAT
1 -TCG-CGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCTCGTTGCGAT-TTACAGAAT
6797019 CGCATTGTGATTTATATGT
63 CGCATTGTGATTTATATGT
* * *
6797038 TCGCGTTGCGATTTTCATATTCGCGTTGCGATT
1 TCGCGTTGCGATTTACAGATACGCGTTGCGATT
6797071 CTGAAAAATC
Statistics
Matches: 155, Mismatches: 32, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
79 1 0.01
80 33 0.21
81 81 0.52
82 35 0.23
83 5 0.03
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.41
Consensus pattern (81 bp):
TCGCGTTGCGATTTACAGATACGCGTTGCGATTTTACGTATTCTCGTTGCGATTTACAGAATCGC
ATTGTGATTTATATGT
Found at i:6797088 original size:21 final size:21
Alignment explanation
Indices: 6797064--6797115 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
6797054 ATATTCGCGT
6797064 TGCGATTCTGAAAAATCGCAA
1 TGCGATTCTGAAAAATCGCAA
* ** *
6797085 TGCGAATT-TGTACTATCGCAT
1 TGCG-ATTCTGAAAAATCGCAA
6797106 TGCGATTCTG
1 TGCGATTCTG
6797116 GGAACTGATT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 3 0.12
21 19 0.76
22 3 0.12
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (21 bp):
TGCGATTCTGAAAAATCGCAA
Found at i:6801084 original size:34 final size:34
Alignment explanation
Indices: 6801046--6801112 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
6801036 TGAAACTGAG
6801046 ATTTTTTTCGATCCG-TATCCGATCCG-ATTATCCT
1 ATTTTTTT--ATCCGATATCCGATCCGAATTATCCT
**
6801080 ATTTTTTTATTGGATATCCGATCCGAATTATCC
1 ATTTTTTTATCCGATATCCGATCCGAATTATCC
6801113 GAAAACATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 3 0.10
33 11 0.38
34 15 0.52
ACGTcount: A:0.21, C:0.22, G:0.12, T:0.45
Consensus pattern (34 bp):
ATTTTTTTATCCGATATCCGATCCGAATTATCCT
Found at i:6801086 original size:33 final size:34
Alignment explanation
Indices: 6801048--6801112 Score: 80
Period size: 33 Copynumber: 1.9 Consensus size: 34
6801038 AAACTGAGAT
6801048 TTTTTTCGATCCG-TATCCGATCCG-ATTATCCTA
1 TTTTTT-GATCCGATATCCGATCCGAATTATCCTA
* **
6801081 TTTTTTTATTGGATATCCGATCCGAATTATCC
1 TTTTTTGATCCGATATCCGATCCGAATTATCC
6801113 GAAAACATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 3 0.11
33 17 0.63
34 7 0.26
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.45
Consensus pattern (34 bp):
TTTTTTGATCCGATATCCGATCCGAATTATCCTA
Found at i:6802121 original size:200 final size:197
Alignment explanation
Indices: 6801626--6802162 Score: 543
Period size: 200 Copynumber: 2.7 Consensus size: 197
6801616 TTCGAGGAGT
* * * * * * * *
6801626 ATTTTC-AGTAGTTAATCT-AAATTTTTTCATAATTTATAAGATTAGATGCGTAATATTGGAATT
1 ATTTTCGAGTAGTTAATATGAAATATTTTCGTAATTTATAAGATTAGAGGCGTAGTATTAGTACT
* * * * * **
6801689 TATCTTTCAGTTGAGGTCAATACTGACACATACGAGATATTGTAAGCGGGTTAAAAATCGGGTTG
66 TATCTTTCAATTGAGGTTAATA-TCACACATACGAGACATTGTAAGCGGGGTAAAAATCACGTTG
* *
6801754 AAAA-GGTTCCAAAGCTTGTTTTGTGCATGAAGAAAAAACTAAAATTGTTTGATAGGCATATTCG
130 AAAATGGTT-CAAAGCTTGTTTTGTGCATGAAGAAAAAACTAAAATGGCTTGATAGGCATATTC-
6801818 AGGGG
193 AGGGG
* * * * * *
6801823 GTTTTCGAGTAGTTGATGTGAAATATTTT-GTAATTTATAATATTAGAGGTGTAGTATTTGTAAC
1 ATTTTCGAGTAGTTAATATGAAATATTTTCGTAATTTATAAGATTAGAGGCGTAGTATTAGT-AC
* **
6801887 TTATCTTTCAATTGAGGGTAATATTGGCACATACGAGACATTGTAAGCGGGGTAAAAATCACGTT
65 TTATCTTTCAATTGAGGTTAATA-TCACACATACGAGACATTGTAAGCGGGGTAAAAATCACGTT
* * * *
6801952 CAAAATGGTTCAAAGCTTAGTTTTGTGTATGAA-AAAGAAGCTAAAATGGCTTGATAGGCATGTT
129 GAAAATGGTTCAAAGCTT-GTTTTGTGCATGAAGAAA-AAACTAAAATGGCTTGATAGGCATATT
*
6802016 -AGGTCAGT
192 CAGG---GG
*
6802024 ATTTTC-A-TAAAGTTAATATGAAA-ATTTTCGTAAATTATAAGATTAGAGGCGTAGTATTAGTA
1 ATTTTCGAGT--AGTTAATATGAAATATTTTCGTAATTTATAAGATTAGAGGCGTAGTATTAGTA
* * * * * * *
6802086 CTTATGTTTCAATTGAGGTTAGTATCATTACATACGAGACATTCTAAGCAGTGTAAAAATCACAT
64 CTTATCTTTCAATTGAGGTTAATATCA-CACATACGAGACATTGTAAGCGGGGTAAAAATCACGT
6802151 TGAAAATGGTTC
128 TGAAAATGGTTC
6802163 GAAACCAAAA
Statistics
Matches: 281, Mismatches: 46, Indels: 23
0.80 0.13 0.07
Matches are distributed among these distances:
197 5 0.02
198 38 0.14
199 82 0.29
200 111 0.40
201 45 0.16
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.35
Consensus pattern (197 bp):
ATTTTCGAGTAGTTAATATGAAATATTTTCGTAATTTATAAGATTAGAGGCGTAGTATTAGTACT
TATCTTTCAATTGAGGTTAATATCACACATACGAGACATTGTAAGCGGGGTAAAAATCACGTTGA
AAATGGTTCAAAGCTTGTTTTGTGCATGAAGAAAAAACTAAAATGGCTTGATAGGCATATTCAGG
GG
Found at i:6805599 original size:36 final size:36
Alignment explanation
Indices: 6805553--6805655 Score: 179
Period size: 36 Copynumber: 2.9 Consensus size: 36
6805543 ATTTATCCAT
* * *
6805553 TATCAGCTTTGATACATTCGTGTATCAATGTTATTA
1 TATCATCTTTGGTACATTCGTGTATCAATGTTATCA
6805589 TATCATCTTTGGTACATTCGTGTATCAATGTTATCA
1 TATCATCTTTGGTACATTCGTGTATCAATGTTATCA
6805625 TATCATCTTTGGTACATTCGTGTATCAATGT
1 TATCATCTTTGGTACATTCGTGTATCAATGT
6805656 CCAACATCGT
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 64 1.00
ACGTcount: A:0.25, C:0.16, G:0.15, T:0.45
Consensus pattern (36 bp):
TATCATCTTTGGTACATTCGTGTATCAATGTTATCA
Found at i:6805889 original size:19 final size:19
Alignment explanation
Indices: 6805865--6805909 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
6805855 TTTATCAGAT
6805865 ATGATTTAACATAATTTTC
1 ATGATTTAACATAATTTTC
**
6805884 ATGATTTCTCATAATTTTC
1 ATGATTTAACATAATTTTC
6805903 ATGATTT
1 ATGATTT
6805910 CATGATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.31, C:0.11, G:0.07, T:0.51
Consensus pattern (19 bp):
ATGATTTAACATAATTTTC
Found at i:6805910 original size:8 final size:9
Alignment explanation
Indices: 6805878--6805917 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
6805868 ATTTAACATA
6805878 ATTTTCATG
1 ATTTTCATG
*
6805887 ATTTCTCATA
1 ATTT-TCATG
6805897 ATTTTCATG
1 ATTTTCATG
6805906 A-TTTCATG
1 ATTTTCATG
6805914 ATTT
1 ATTT
6805918 AAAAAGAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 8 0.30
9 11 0.41
10 8 0.30
ACGTcount: A:0.25, C:0.12, G:0.07, T:0.55
Consensus pattern (9 bp):
ATTTTCATG
Found at i:6805910 original size:19 final size:19
Alignment explanation
Indices: 6805874--6805910 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
6805864 TATGATTTAA
6805874 CATAATTTTCATGATTTCT
1 CATAATTTTCATGATTTCT
6805893 CATAATTTTCATGATTTC
1 CATAATTTTCATGATTTC
6805911 ATGATTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.16, G:0.05, T:0.51
Consensus pattern (19 bp):
CATAATTTTCATGATTTCT
Found at i:6814543 original size:8 final size:9
Alignment explanation
Indices: 6814518--6814542 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
6814508 GAAGGCTGGG
6814518 GAGAAAAAT
1 GAGAAAAAT
6814527 GAGAAAAAT
1 GAGAAAAAT
6814536 GAGAAAA
1 GAGAAAA
6814543 TTACTGTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (9 bp):
GAGAAAAAT
Found at i:6817224 original size:16 final size:15
Alignment explanation
Indices: 6817203--6817232 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
6817193 TTTTCAAGAA
6817203 TTGATGAATGATTTAT
1 TTGATGAAT-ATTTAT
6817219 TTGATGAATATTTA
1 TTGATGAATATTTA
6817233 AGAAGATTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (15 bp):
TTGATGAATATTTAT
Found at i:6818015 original size:23 final size:23
Alignment explanation
Indices: 6817986--6818086 Score: 83
Period size: 20 Copynumber: 4.7 Consensus size: 23
6817976 GCACCCCTGC
6817986 AGTGCATCCATGCACCTGTCACT
1 AGTGCATCCATGCACCTGTCACT
* *
6818009 AGTGCATCGATGCA----TCATGT
1 AGTGCATCCATGCACCTGTCA-CT
*
6818029 AGTGCATCCATGCACCTGCCACT
1 AGTGCATCCATGCACCTGTCACT
* *
6818052 AGTTCATCGATGCACCATG----T
1 AGTGCATCCATGCACC-TGTCACT
6818072 AGTGCATCCATGCAC
1 AGTGCATCCATGCAC
6818087 TCCATTTCGA
Statistics
Matches: 63, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
19 3 0.05
20 28 0.44
23 28 0.44
24 4 0.06
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (23 bp):
AGTGCATCCATGCACCTGTCACT
Found at i:6818033 original size:43 final size:43
Alignment explanation
Indices: 6817986--6818086 Score: 175
Period size: 43 Copynumber: 2.3 Consensus size: 43
6817976 GCACCCCTGC
* *
6817986 AGTGCATCCATGCACCTGTCACTAGTGCATCGATGCATCATGT
1 AGTGCATCCATGCACCTGCCACTAGTGCATCGATGCACCATGT
*
6818029 AGTGCATCCATGCACCTGCCACTAGTTCATCGATGCACCATGT
1 AGTGCATCCATGCACCTGCCACTAGTGCATCGATGCACCATGT
6818072 AGTGCATCCATGCAC
1 AGTGCATCCATGCAC
6818087 TCCATTTCGA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.26
Consensus pattern (43 bp):
AGTGCATCCATGCACCTGCCACTAGTGCATCGATGCACCATGT
Found at i:6820110 original size:19 final size:19
Alignment explanation
Indices: 6820074--6820110 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
6820064 TAAAGATAAT
*
6820074 TTGATTTTGAAAGCAAAAG
1 TTGATTTTGAAAACAAAAG
*
6820093 TTGATTTTGAAAATAAAA
1 TTGATTTTGAAAACAAAA
6820111 ATGAAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.03, G:0.16, T:0.35
Consensus pattern (19 bp):
TTGATTTTGAAAACAAAAG
Done.