Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007999.1 Hibiscus syriacus cultivar Beakdansim tig00110450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11700749
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 29 of 50
Found at i:7050676 original size:64 final size:65
Alignment explanation
Indices: 7050602--7050754 Score: 158
Period size: 61 Copynumber: 2.4 Consensus size: 65
7050592 ACTAAGAGTG
* * *
7050602 CATCGATGCAT-ATAATGCATTTGATG-TTTCA-AAATAGCCTGAGTACATCGATGCATGGTTGG
1 CATCGATGCATCA-AATGCATTCGATGTTTTCATAAA-ACCCTAAGTACATCGATGCATGGTTGG
7050664 TA
64 TA
* * **
7050666 CATCGATGCATCAAATGTATTCGATGTTTTCATAAAACCCTAAGTGCATCGATGCAT-CAT-G--
1 CATCGATGCATCAAATGCATTCGATGTTTTCATAAAACCCTAAGTACATCGATGCATGGTTGGTA
* *
7050727 CATCAATGCATGAAATGCATTCGATGTT
1 CATCGATGCATCAAATGCATTCGATGTT
7050755 CAATTTATTC
Statistics
Matches: 76, Mismatches: 10, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
61 25 0.33
63 1 0.01
64 23 0.30
65 24 0.32
66 3 0.04
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (65 bp):
CATCGATGCATCAAATGCATTCGATGTTTTCATAAAACCCTAAGTACATCGATGCATGGTTGGTA
Found at i:7053823 original size:23 final size:23
Alignment explanation
Indices: 7053794--7053898 Score: 108
Period size: 23 Copynumber: 4.6 Consensus size: 23
7053784 ACATGGCCTT
7053794 GTGCATCGATGCACATTCAAGGA
1 GTGCATCGATGCACATTCAAGGA
7053817 GTGCATCGATGCACATTCAAGGA
1 GTGCATCGATGCACATTCAAGGA
* * * *
7053840 GTGCATTGGTGCACCTTC-A-TA
1 GTGCATCGATGCACATTCAAGGA
* *
7053861 GTGTATCGATGAACATTCAAAGG-
1 GTGCATCGATGCACATTC-AAGGA
*
7053884 GATGCATCTATGCAC
1 G-TGCATCGATGCAC
7053899 TGTTCAGTGT
Statistics
Matches: 65, Mismatches: 13, Indels: 7
0.76 0.15 0.08
Matches are distributed among these distances:
21 14 0.22
22 1 0.02
23 40 0.62
24 10 0.15
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.26
Consensus pattern (23 bp):
GTGCATCGATGCACATTCAAGGA
Found at i:7061057 original size:2 final size:2
Alignment explanation
Indices: 7061050--7061120 Score: 142
Period size: 2 Copynumber: 35.5 Consensus size: 2
7061040 TAATAATAAT
7061050 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7061092 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7061121 CAAATGATAT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 69 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7066772 original size:22 final size:23
Alignment explanation
Indices: 7066744--7066791 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 23
7066734 ATTTTTCTGC
7066744 TTTCGAATA-GAAAAGTAATAG-T
1 TTTCGAATACGAAAA-TAATAGCT
7066766 TTTCGAATACGAAAATAATAGCT
1 TTTCGAATACGAAAATAATAGCT
7066789 TTT
1 TTT
7066792 GAAAACTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (23 bp):
TTTCGAATACGAAAATAATAGCT
Found at i:7067932 original size:84 final size:84
Alignment explanation
Indices: 7067844--7068009 Score: 230
Period size: 84 Copynumber: 2.0 Consensus size: 84
7067834 GTGGCATTTA
* *
7067844 CAACAAACGCCGATATAGATTTGTA-ATTCAGTGGCGTTT-TCATACAAACGCT-GCAATAGATA
1 CAACAAACGACGATATAGATTTGTACATT-AGTGGCGTTTAT-ATACAAACG-TAGCAAAAGATA
*
7067906 TAATATATAGTGGCATTTTTCT
63 CAATATATAGTGGCATTTTTCT
* *
7067928 CAACAAACGACGCTATAGATTTGTACATTAGTGGCGTTTATATACAAACGTAGCAAAAGCTACAA
1 CAACAAACGACGATATAGATTTGTACATTAGTGGCGTTTATATACAAACGTAGCAAAAGATACAA
*
7067993 TATTTAGTGGCATTTTT
66 TATATAGTGGCATTTTT
7068010 TTGCAAAAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
83 1 0.01
84 68 0.93
85 4 0.05
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (84 bp):
CAACAAACGACGATATAGATTTGTACATTAGTGGCGTTTATATACAAACGTAGCAAAAGATACAA
TATATAGTGGCATTTTTCT
Found at i:7075855 original size:400 final size:400
Alignment explanation
Indices: 7075110--7075908 Score: 1161
Period size: 400 Copynumber: 2.0 Consensus size: 400
7075100 GTTTGTTTAT
* * ** *
7075110 TACATATATCATGCCGAGGAGAAAAATAATTGATTTGCGGGTTGTTCGAGCTTCTGAAGACCATG
1 TACAGATATCATGCCGAGGAGAAAAATAAGTGATTTGCGAATTGTTCGAGCTTCTGAAGACAATG
* *
7075175 AAGAAATAAATAACGAGGAATCGAATGCACCTGAGTCTTCCGAAGTTCCTAAAACTGTTGAAGAA
66 AACAAAGAAATAACGAGGAATCGAATGCACCTGAGTCTTCCGAAGTTCCTAAAACTGTTGAAGAA
*
7075240 GAAGTAGAAATTCAAGGTAATCTTTGAAACTTTATTTACTACTTTGTTCATTTTCAAAACTGACA
131 GAAGTAGAAATTCAAGGTAATCTTCGAAACTTTATTTACTACTTTGTTCATTTTCAAAACTGACA
*** * * * **
7075305 TTTAATAATTTCTTATATAGTTGAAAATGCTGGAACTTGCAAGACTCGAGGACGTACAACTTTGA
196 TTTAATAATTTCTTATATAGTTGAAAATGCTGGAACGCACAAGACTAGAGAACATACAAAGTTGA
* * *
7075370 AGGAATTAAATCAACTTCCTCCTGGGCATCGTGTCAAAGTTTCAAGAAACGATGTCGATCAACCT
261 AGGAATTAAACCAACTTCCTCCTGGGCACCGTGTCAAAGTTTCAAGAAACGATGACGATCAACCT
* **
7075435 ATTGGCCCAGAAGCACGTCTTCTAGCATGTTACTTAGGCATAGTTGGACGTAATGTGAATCTATT
326 ATTGGCCCAGAAGCACGTCTTCTAGCAGGTTACTTAGGCATAGTTGGACGTAATACGAATCTATT
*
7075500 ACTGATCAAC
391 ACCGATCAAC
* * *
7075510 TACAGATATCATGTCGAGGAGAAAAATAAGTGAGTTT-CGAATTGTTTGAGGTTCTGAAGACAAT
1 TACAGATATCATGCCGAGGAGAAAAATAAGTGA-TTTGCGAATTGTTCGAGCTTCTGAAGACAAT
* * * ** * *
7075574 GAACAAAGAAATAATGAGGAATCGAATGTAGCTGAGTCTTTTGAAGTTCTTGAAACTGTTGAAGA
65 GAACAAAGAAATAACGAGGAATCGAATGCACCTGAGTCTTCCGAAGTTCCTAAAACTGTTGAAGA
* * * * *
7075639 AGATGTAGAAATTCAAGGTAATCTTCGAAGCTTTATTTATTACTTTGTTCATTTTTAAAACTTAC
130 AGAAGTAGAAATTCAAGGTAATCTTCGAAACTTTATTTACTACTTTGTTCATTTTCAAAACTGAC
*
7075704 ATTTAATAATTTCTTATATAGTTGAAAATGCTGGAACGCACAAGAGTAGAGAACATACAAAGTTG
195 ATTTAATAATTTCTTATATAGTTGAAAATGCTGGAACGCACAAGACTAGAGAACATACAAAGTTG
** *
7075769 AAGGAATTCTACCAACTTCCTCCTGGGCACCGTGTCAAAGTTTCTAGAAACGATGAC-AGTCAAC
260 AAGGAATTAAACCAACTTCCTCCTGGGCACCGTGTCAAAGTTTCAAGAAACGATGACGA-TCAAC
* * *
7075833 CTATTGGCCTAGAAGCACGTCTTCTAGCGGGTTACTTAGGCATAGTTGGACGTAATACGAATCTG
324 CTATTGGCCCAGAAGCACGTCTTCTAGCAGGTTACTTAGGCATAGTTGGACGTAATACGAATCTA
7075898 TTACCGATCAA
389 TTACCGATCAA
7075909 TTATGAGTCA
Statistics
Matches: 352, Mismatches: 45, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
399 1 0.00
400 348 0.99
401 3 0.01
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (400 bp):
TACAGATATCATGCCGAGGAGAAAAATAAGTGATTTGCGAATTGTTCGAGCTTCTGAAGACAATG
AACAAAGAAATAACGAGGAATCGAATGCACCTGAGTCTTCCGAAGTTCCTAAAACTGTTGAAGAA
GAAGTAGAAATTCAAGGTAATCTTCGAAACTTTATTTACTACTTTGTTCATTTTCAAAACTGACA
TTTAATAATTTCTTATATAGTTGAAAATGCTGGAACGCACAAGACTAGAGAACATACAAAGTTGA
AGGAATTAAACCAACTTCCTCCTGGGCACCGTGTCAAAGTTTCAAGAAACGATGACGATCAACCT
ATTGGCCCAGAAGCACGTCTTCTAGCAGGTTACTTAGGCATAGTTGGACGTAATACGAATCTATT
ACCGATCAAC
Found at i:7077425 original size:44 final size:43
Alignment explanation
Indices: 7077343--7077504 Score: 200
Period size: 44 Copynumber: 3.7 Consensus size: 43
7077333 ATTATGTGTT
* *
7077343 ATTTAGCGGCGTTTGTA-ACAAAAACGCTGCAATATACCATAC
1 ATTTAGCGGCGTTTGTATACAAAAACGCCGCTATATACCATAC
* *
7077385 ATTTAGCGGCGTTTGTATCCTAAAAACGCCGCTATATACCAGAC
1 ATTTAGCGGCGTTTGTATAC-AAAAACGCCGCTATATACCATAC
* *
7077429 CTTTAGCGGCGTTTGTATCCCAAAAACGCCGCTATATACCATAC
1 ATTTAGCGGCGTTTGTAT-ACAAAAACGCCGCTATATACCATAC
* * * *
7077473 CTTTAGCTGCGTTTTTATAAAAAAAACGCCGC
1 ATTTAGCGGCGTTTGTAT-ACAAAAACGCCGC
7077505 GAAATCTCAA
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
42 17 0.16
43 1 0.01
44 86 0.81
45 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
ATTTAGCGGCGTTTGTATACAAAAACGCCGCTATATACCATAC
Found at i:7077498 original size:88 final size:86
Alignment explanation
Indices: 7077344--7077504 Score: 223
Period size: 88 Copynumber: 1.8 Consensus size: 86
7077334 TTATGTGTTA
* ***
7077344 TTTAGCGGCGTTTGTAACAAAAACGCTGCAATATACCATACATTTAGCGGCGTTTGTATCCTAAA
1 TTTAGCGGCGTTTGTAACAAAAACGCCGCAATATACCATACATTTAGCGGCGTTTGTATAAAAAA
7077409 AACGCCGCTATATACCAGACC
66 AACGCCGCTATATACCAGACC
* * * * *
7077430 TTTAGCGGCGTTTGTATCCCAAAAACGCCGCTATATACCATACCTTTAGCTGCGTTTTTATAAAA
1 TTTAGCGGCGTTTGTA--ACAAAAACGCCGCAATATACCATACATTTAGCGGCGTTTGTATAAAA
7077495 AAAACGCCGC
64 AAAACGCCGC
7077505 GAAATCTCAA
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
86 16 0.25
88 48 0.75
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (86 bp):
TTTAGCGGCGTTTGTAACAAAAACGCCGCAATATACCATACATTTAGCGGCGTTTGTATAAAAAA
AACGCCGCTATATACCAGACC
Found at i:7077563 original size:43 final size:43
Alignment explanation
Indices: 7077494--7077576 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
7077484 TTTTTATAAA
* * * *
7077494 AAAAACGCCGCGAAATCTCAACACCTATTGCGGCGTTTGTGCC
1 AAAAACACCGCGAAATATCAAAACCTATTGCGGCATTTGTGCC
*
7077537 AAAAACACCGCTAAATATCAAAACCTATTGCGGCATTTGT
1 AAAAACACCGCGAAATATCAAAACCTATTGCGGCATTTGT
7077577 AAGACAAACA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.23
Consensus pattern (43 bp):
AAAAACACCGCGAAATATCAAAACCTATTGCGGCATTTGTGCC
Found at i:7077586 original size:43 final size:43
Alignment explanation
Indices: 7077494--7077598 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 43
7077484 TTTTTATAAA
* * * * * **
7077494 AAAAACGCCGCGAAATCTCAACACCTATTGCGGCGTTTGTGCC
1 AAAAACACCGCTAAATATCAAAACCTATTGCGGCATTTGTAAC
*
7077537 AAAAACACCGCTAAATATCAAAACCTATTGCGGCATTTGTAAG
1 AAAAACACCGCTAAATATCAAAACCTATTGCGGCATTTGTAAC
* *
7077580 ACAAACACCTCTAAATATC
1 AAAAACACCGCTAAATATC
7077599 GTTACCTTTT
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.37, C:0.27, G:0.14, T:0.22
Consensus pattern (43 bp):
AAAAACACCGCTAAATATCAAAACCTATTGCGGCATTTGTAAC
Found at i:7079176 original size:18 final size:18
Alignment explanation
Indices: 7079153--7079204 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
7079143 TGTGTTTTAT
* *
7079153 GTGGTCCTTTGGGACATA
1 GTGGTCATTCGGGACATA
7079171 GTGGTCATTCGGGACATA
1 GTGGTCATTCGGGACATA
7079189 GTGGTCATTCGGGACA
1 GTGGTCATTCGGGACA
7079205 AATTCTACAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.19, C:0.17, G:0.35, T:0.29
Consensus pattern (18 bp):
GTGGTCATTCGGGACATA
Found at i:7079412 original size:20 final size:20
Alignment explanation
Indices: 7079387--7079440 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
7079377 ACGTATATAC
7079387 ATAATAAGTTCATAATGATA
1 ATAATAAGTTCATAATGATA
7079407 ATAATAAGTTCATAATGATA
1 ATAATAAGTTCATAATGATA
*
7079427 ATAATAAGTGCATA
1 ATAATAAGTTCATA
7079441 TGTGTATTGG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.33
Consensus pattern (20 bp):
ATAATAAGTTCATAATGATA
Found at i:7084192 original size:26 final size:28
Alignment explanation
Indices: 7084151--7084209 Score: 79
Period size: 26 Copynumber: 2.2 Consensus size: 28
7084141 TCATCTAATA
*
7084151 AATTAATTAAACTTATAA-ATTATTTTT
1 AATTAATTAAACTTATAACATAATTTTT
*
7084178 AATTAA-TAAATTTATAACATAATTTTT
1 AATTAATTAAACTTATAACATAATTTTT
7084205 -ATTAA
1 AATTAA
7084210 ATACAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 15 0.52
27 14 0.48
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (28 bp):
AATTAATTAAACTTATAACATAATTTTT
Found at i:7084212 original size:27 final size:27
Alignment explanation
Indices: 7084151--7084212 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
7084141 TCATCTAATA
* *
7084151 AATTAATTAAACTTATAAATTATTTTT
1 AATTAAATAAACTTATAAATAATTTTT
*
7084178 AATT-AATAAATTTATAACATAATTTTT
1 AATTAAATAAACTTATAA-ATAATTTTT
7084205 -ATTAAATA
1 AATTAAATA
7084213 CAATAAATCT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 14 0.47
27 16 0.53
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (27 bp):
AATTAAATAAACTTATAAATAATTTTT
Found at i:7093783 original size:55 final size:55
Alignment explanation
Indices: 7093695--7093800 Score: 185
Period size: 55 Copynumber: 1.9 Consensus size: 55
7093685 TTTTCACGAG
7093695 ATAGTGCCCTCGCCAGATTAATTACTCACATGGGGTGATCTCTACAGTCCCTGAA
1 ATAGTGCCCTCGCCAGATTAATTACTCACATGGGGTGATCTCTACAGTCCCTGAA
* * *
7093750 ATAGTGTCCTCGCCAGATTAATTGCTCAGATGGGGTGATCTCTACAGTCCC
1 ATAGTGCCCTCGCCAGATTAATTACTCACATGGGGTGATCTCTACAGTCCC
7093801 CATATAGGTC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (55 bp):
ATAGTGCCCTCGCCAGATTAATTACTCACATGGGGTGATCTCTACAGTCCCTGAA
Found at i:7093874 original size:29 final size:30
Alignment explanation
Indices: 7093841--7093907 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 30
7093831 TGGGTAGATT
7093841 GCCATGCACGCCCAGCGACCT-ACCAGGTC
1 GCCATGCACGCCCAGCGACCTAACCAGGTC
* **
7093870 GCCATGCACGCCCAGTGACCTAAGTAGGTC
1 GCCATGCACGCCCAGCGACCTAACCAGGTC
7093900 GCCATGCA
1 GCCATGCA
7093908 ATCCATGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 20 0.59
30 14 0.41
ACGTcount: A:0.22, C:0.39, G:0.25, T:0.13
Consensus pattern (30 bp):
GCCATGCACGCCCAGCGACCTAACCAGGTC
Found at i:7096990 original size:19 final size:19
Alignment explanation
Indices: 7096963--7097006 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
7096953 TGCACTTAAT
*
7096963 GCACTTGTAGTGTCAGAAC
1 GCACATGTAGTGTCAGAAC
*
7096982 GCACATGTAGTGTCGGAAC
1 GCACATGTAGTGTCAGAAC
*
7097001 GTACAT
1 GCACAT
7097007 AAAGTGCTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (19 bp):
GCACATGTAGTGTCAGAAC
Found at i:7097012 original size:19 final size:19
Alignment explanation
Indices: 7096971--7097032 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
7096961 ATGCACTTGT
**
7096971 AGTGTCAGAACGCACATGT
1 AGTGTCAGAACGCACATAA
* *
7096990 AGTGTCGGAACGTACATAA
1 AGTGTCAGAACGCACATAA
* *
7097009 AGTG-CTAGATCGCACATAG
1 AGTGTC-AGAACGCACATAA
7097028 AGTGT
1 AGTGT
7097033 TAGGCTAGTG
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
18 1 0.03
19 32 0.97
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (19 bp):
AGTGTCAGAACGCACATAA
Found at i:7097078 original size:12 final size:12
Alignment explanation
Indices: 7097057--7097090 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
7097047 TGAATATACT
*
7097057 AGATACAGAAAC
1 AGATATAGAAAC
7097069 AGATATAGAAAC
1 AGATATAGAAAC
7097081 AGATATAGAA
1 AGATATAGAA
7097091 TCACTCCACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.59, C:0.09, G:0.18, T:0.15
Consensus pattern (12 bp):
AGATATAGAAAC
Found at i:7099969 original size:18 final size:18
Alignment explanation
Indices: 7099906--7099975 Score: 68
Period size: 18 Copynumber: 3.6 Consensus size: 18
7099896 AAAATAACTC
*
7099906 AGTATCGATACTCCTACTAAG
1 AGTATCGATACTCC--CT-TG
*
7099927 AGTATCAATACTCTACCTTG
1 AGTATCGATACTC--CCTTG
*
7099947 GGTATCGATACTCCCTTG
1 AGTATCGATACTCCCTTG
7099965 AGTATCGATAC
1 AGTATCGATAC
7099976 CAAAAATGGA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
18 15 0.36
20 12 0.29
21 14 0.33
23 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (18 bp):
AGTATCGATACTCCCTTG
Found at i:7106516 original size:21 final size:22
Alignment explanation
Indices: 7106490--7106544 Score: 71
Period size: 20 Copynumber: 2.6 Consensus size: 22
7106480 AAAATAGCTC
*
7106490 AGTATCGATACTCCTACTA-AG
1 AGTATCGATACTCCTACCATAG
7106511 AGTATCGATACT-CTACCATAG
1 AGTATCGATACTCCTACCATAG
*
7106532 -GTATTGATACTCC
1 AGTATCGATACTCC
7106545 CTTGAGGACT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 15 0.50
21 15 0.50
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (22 bp):
AGTATCGATACTCCTACCATAG
Found at i:7107693 original size:21 final size:21
Alignment explanation
Indices: 7107667--7107706 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7107657 CAAAACTTAC
7107667 CTTACCTTTATTCTTCTATGG
1 CTTACCTTTATTCTTCTATGG
7107688 CTTACCTTTATTCTTCTAT
1 CTTACCTTTATTCTTCTAT
7107707 TACTCAAGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.15, C:0.25, G:0.05, T:0.55
Consensus pattern (21 bp):
CTTACCTTTATTCTTCTATGG
Found at i:7109661 original size:16 final size:15
Alignment explanation
Indices: 7109640--7109681 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
7109630 AATAATAAGC
7109640 TTTTAAATTATATCAT
1 TTTTAAATTATAT-AT
7109656 TTTTAAATTA-A-AT
1 TTTTAAATTATATAT
*
7109669 ATTTAAATTATAT
1 TTTTAAATTATAT
7109682 TTTAATCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
13 11 0.48
14 1 0.04
15 1 0.04
16 10 0.43
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTTAAATTATATAT
Found at i:7109675 original size:29 final size:28
Alignment explanation
Indices: 7109641--7109716 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 28
7109631 ATAATAAGCT
* *
7109641 TTTAAATTATATCATTT-TTAAATTAAATA
1 TTTAAATTATAT--TTTATCAAAATAAATA
7109670 TTTAAATTATATTTTAATCAAAATAAATA
1 TTTAAATTATATTTT-ATCAAAATAAATA
7109699 TTTAAATTATAATTTTAT
1 TTTAAATTAT-ATTTTAT
7109717 AGTTTCTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 3 0.07
29 34 0.81
30 5 0.12
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (28 bp):
TTTAAATTATATTTTATCAAAATAAATA
Found at i:7109865 original size:16 final size:16
Alignment explanation
Indices: 7109844--7109889 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 16
7109834 GCTATAATAT
*
7109844 ATAAAAAT-TGTAAAA
1 ATAAAAATATTTAAAA
*
7109859 ATAAAAATATTTATAA
1 ATAAAAATATTTAAAA
*
7109875 AT-AAAATTTTTAAAA
1 ATAAAAATATTTAAAA
7109890 TAATCTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (16 bp):
ATAAAAATATTTAAAA
Found at i:7109881 original size:15 final size:14
Alignment explanation
Indices: 7109856--7109904 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
7109846 AAAAATTGTA
7109856 AAAATAAAAATATTT
1 AAAAT-AAAATATTT
*
7109871 ATAAATAAAATTTTT
1 A-AAATAAAATATTT
**
7109886 AAAATAATCTATTT
1 AAAATAAAATATTT
7109900 AAAAT
1 AAAAT
7109905 TTTTATTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
14 15 0.52
15 10 0.34
16 4 0.14
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (14 bp):
AAAATAAAATATTT
Found at i:7110961 original size:10 final size:10
Alignment explanation
Indices: 7110946--7110970 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7110936 TAACTGCTTG
7110946 ACTGCTTACA
1 ACTGCTTACA
7110956 ACTGCTTACA
1 ACTGCTTACA
7110966 ACTGC
1 ACTGC
7110971 ATATCATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.32, G:0.12, T:0.28
Consensus pattern (10 bp):
ACTGCTTACA
Found at i:7113468 original size:3 final size:3
Alignment explanation
Indices: 7113460--7113530 Score: 133
Period size: 3 Copynumber: 23.7 Consensus size: 3
7113450 AATATATATT
*
7113460 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7113508 TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
7113531 TGGGTAAAAA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:7113975 original size:113 final size:113
Alignment explanation
Indices: 7113777--7114401 Score: 952
Period size: 113 Copynumber: 5.5 Consensus size: 113
7113767 ATAAGCTTTT
* * * * * * *
7113777 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTAATGAATTCAGGTA
1 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGATAATCCATCAAATGATGGATTCAAGTA
*
7113842 AAAGGTTGAACAAATTCTTCTCATTATGAACTT-TCTCTTCCTTCTTCA
66 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCT-TCTTCCTTCTTCA
*
7113890 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGATGATCCATCAAATGATGGATTCAAGTA
1 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGATAATCCATCAAATGATGGATTCAAGTA
7113955 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
66 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* ** *
7114003 GATGAGTTCTTCTCATTATGAACTTTCTCTGAAAAAAATAATCCATCAAGTGATGGATTC-AG-A
1 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGATAATCCATCAAATGATGGATTCAAGTA
*
7114066 CAAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
66 -AAAA-GTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* * * * *
7114116 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATTATAATCCATCAATTTGATGAATTCAGGC
1 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGATAATCCATCAA-ATGATGGATTCAAGT
* *
7114181 AAAATGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCA
65 AAAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
*
7114230 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGATGATCCATCAAATGATGGATTCAAGTA
1 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGATAATCCATCAAATGATGGATTCAAGTA
* *
7114295 AAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
66 AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
*
7114343 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATG-TAAATCCATCAAATGATAGATT
1 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGAT-AATCCATCAAATGATGGATT
7114402 TGAATCTTTG
Statistics
Matches: 472, Mismatches: 33, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
111 1 0.00
112 7 0.01
113 360 0.76
114 99 0.21
115 4 0.01
116 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (113 bp):
GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGATAATCCATCAAATGATGGATTCAAGTA
AAAAGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCA
Found at i:7114287 original size:227 final size:226
Alignment explanation
Indices: 7113777--7114396 Score: 1012
Period size: 227 Copynumber: 2.7 Consensus size: 226
7113767 ATAAGCTTTT
* * * *
7113777 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTAATGAATTCAGGTA
1 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGATGATCCATCAAGTGATGGATTCAGATA
*
7113842 AAAGGTTGAACAAATTCTTCTCATTATGAACTT-TCTCTTCCTTCTTCAGATGAGTTCTTCTCAT
66 AAAGGTTAAACAAATTCTTCTCATTATGAACTTCT-TCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * * *
7113906 TATGAACTTTCTCTGGAAATGATGATCCATCAAATGATGGATTCAAGTAAAAAGTTGAACAAATT
130 TATGAACTTTCTCTGGAAATTATAATCCATCAAATGATGAATTCAAGCAAAAAGTTGAACAAATT
7113971 CTTCTCATTATGAACTTCTTCTTCCTTCTTCA
195 CTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* * * *
7114003 GATGAGTTCTTCTCATTATGAACTTTCTCTGAAAAAAATAATCCATCAAGTGATGGATTCAGACA
1 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGATGATCCATCAAGTGATGGATTCAGATA
7114068 AAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
66 AAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
* * *
7114133 ATGAACTTTCTCTGGAAATTATAATCCATCAATTTGATGAATTCAGGCAAAATGTTGAACAAATT
131 ATGAACTTTCTCTGGAAATTATAATCCATCAA-ATGATGAATTCAAGCAAAAAGTTGAACAAATT
*
7114198 CTTCTCATTATGAATTTCTTCTTCCTTCTTCA
195 CTTCTCATTATGAACTTCTTCTTCCTTCTTCA
* *
7114230 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATGATGATCCATCAAATGATGGATTCA-AGT
1 GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGATGATCCATCAAGTGATGGATTCAGA-T
7114294 AAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
65 AAAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
7114359 TATGAACTTTCTCTGGAAATGTA-AATCCATCAAATGAT
130 TATGAACTTTCTCTGGAAAT-TATAATCCATCAAATGAT
7114397 AGATTTGAAT
Statistics
Matches: 366, Mismatches: 24, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
226 154 0.42
227 210 0.57
228 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (226 bp):
GATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGATGATCCATCAAGTGATGGATTCAGATA
AAAGGTTAAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT
ATGAACTTTCTCTGGAAATTATAATCCATCAAATGATGAATTCAAGCAAAAAGTTGAACAAATTC
TTCTCATTATGAACTTCTTCTTCCTTCTTCA
Found at i:7115269 original size:83 final size:83
Alignment explanation
Indices: 7115130--7115702 Score: 1119
Period size: 83 Copynumber: 6.9 Consensus size: 83
7115120 GTTCCTACCA
* *
7115130 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAACACATTCATCTTCCAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
7115195 CAATGATTGGTTCTGTCT
66 CAATGATTGGTTCTGTCT
7115213 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
7115278 CAATGATTGGTTCTGTCT
66 CAATGATTGGTTCTGTCT
7115296 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
7115361 CAATGATTGGTTCTGTCT
66 CAATGATTGGTTCTGTCT
*
7115379 AACCAGATCAAATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
7115444 CAATGATTGGTTCTGTCT
66 CAATGATTGGTTCTGTCT
7115462 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
7115527 CAATGATTGGTTCTGTCT
66 CAATGATTGGTTCTGTCT
7115545 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
7115610 CAATGATTGGTTCTGTCT
66 CAATGATTGGTTCTGTCT
7115628 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
7115693 CAATGATTGG
66 CAATGATTGG
7115703 ACTAGGATAT
Statistics
Matches: 486, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 486 1.00
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (83 bp):
AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTCTAAATT
CAATGATTGGTTCTGTCT
Found at i:7116827 original size:6 final size:6
Alignment explanation
Indices: 7116816--7116888 Score: 64
Period size: 6 Copynumber: 12.5 Consensus size: 6
7116806 TTGACCCCCC
** *
7116816 CTTTTT CTTTTT -TTCCT -TTTTT CTTTTT CTTTCTTT TTTTTT CTTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT C-TT-TTT CTTTTT CTTTTT
*
7116864 C-TTTT CTCTTT -TTTTT CTTTTT CTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTT
7116889 CAAGCATAAT
Statistics
Matches: 54, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
5 15 0.28
6 32 0.59
7 4 0.07
8 3 0.06
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
CTTTTT
Found at i:7116838 original size:16 final size:16
Alignment explanation
Indices: 7116817--7116885 Score: 95
Period size: 16 Copynumber: 4.2 Consensus size: 16
7116807 TGACCCCCCC
*
7116817 TTTTTCTTTTTTTCCT
1 TTTTTCTTTTTTTTCT
7116833 TTTTTCTTTTTCTTTCT
1 TTTTTCTTTTT-TTTCT
7116850 TTTTT-TTTCTTTTTCT
1 TTTTTCTTT-TTTTTCT
*
7116866 TTTCTCTTTTTTTTCT
1 TTTTTCTTTTTTTTCT
7116882 TTTT
1 TTTT
7116886 CTTCAAGCAT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
16 33 0.70
17 14 0.30
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTCTTTTTTTTCT
Found at i:7116842 original size:22 final size:20
Alignment explanation
Indices: 7116816--7116888 Score: 101
Period size: 22 Copynumber: 3.5 Consensus size: 20
7116806 TTGACCCCCC
7116816 CTTTTTCTTTTTTTCCTTTTTT
1 CTTTTTCTTTTTTT--TTTTTT
*
7116838 CTTTTTCTTTCTTTTTTTTT
1 CTTTTTCTTTTTTTTTTTTT
7116858 CTTTTTCTTTTCTCTTTTTTTT
1 CTTTTTCTTTT-T-TTTTTTTT
7116880 CTTTTTCTT
1 CTTTTTCTT
7116889 CAAGCATAAT
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
20 16 0.34
21 1 0.02
22 30 0.64
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (20 bp):
CTTTTTCTTTTTTTTTTTTT
Found at i:7116848 original size:26 final size:27
Alignment explanation
Indices: 7116819--7116879 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
7116809 ACCCCCCCTT
7116819 TTTCTTTTTTTC-CTTTTTTCTTTT-TC
1 TTTCTTTTTTTCTC-TTTTTCTTTTCTC
*
7116845 TTTCTTTTTTTTTCTTTTTCTTTTCTC
1 TTTCTTTTTTTCTCTTTTTCTTTTCTC
7116872 TTT-TTTTT
1 TTTCTTTTT
7116880 CTTTTTCTTC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 26 0.81
27 6 0.19
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (27 bp):
TTTCTTTTTTTCTCTTTTTCTTTTCTC
Found at i:7127538 original size:15 final size:13
Alignment explanation
Indices: 7127509--7127543 Score: 52
Period size: 15 Copynumber: 2.5 Consensus size: 13
7127499 CTCTGACAGA
7127509 AAAATAATGAAAT
1 AAAATAATGAAAT
7127522 AAAATAATTGCAAAT
1 AAAATAA-TG-AAAT
7127537 AAAATAA
1 AAAATAA
7127544 AATGAAACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 7 0.35
14 2 0.10
15 11 0.55
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.23
Consensus pattern (13 bp):
AAAATAATGAAAT
Found at i:7127586 original size:28 final size:28
Alignment explanation
Indices: 7127552--7127622 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 28
7127542 AAAATGAAAC
7127552 ATATAAATATTATGAAA-ATAATAAATAA
1 ATATAAATATTATGAAAGATAA-AAATAA
* * *
7127580 ATATAAAAATTTTGAAAAGATAAAATTAA
1 ATATAAATATTATG-AAAGATAAAAATAA
7127609 AT-TAAATA-TATGAA
1 ATATAAATATTATGAA
7127623 TTTTTAATTC
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
26 2 0.06
27 3 0.08
28 17 0.47
29 10 0.28
30 4 0.11
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (28 bp):
ATATAAATATTATGAAAGATAAAAATAA
Found at i:7129741 original size:3 final size:3
Alignment explanation
Indices: 7129733--7129803 Score: 133
Period size: 3 Copynumber: 23.7 Consensus size: 3
7129723 AATATATATT
*
7129733 TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7129781 TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
7129804 TGGGTAAAAA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 66 1.00
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:7133392 original size:19 final size:18
Alignment explanation
Indices: 7133344--7133383 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
7133334 TTTCTTCAAT
7133344 ATTAAAAAATAAATAAATA
1 ATTAAAAAAT-AATAAATA
*
7133363 ATTAAAAAATAATATATA
1 ATTAAAAAATAATAAATA
7133381 ATT
1 ATT
7133384 TATAAAATAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
ATTAAAAAATAATAAATA
Found at i:7133403 original size:118 final size:117
Alignment explanation
Indices: 7133257--7133479 Score: 279
Period size: 118 Copynumber: 1.9 Consensus size: 117
7133247 TATATTAATT
* * *
7133257 TATATATATTTATAAATAAAATACTTATTTATTTAGAAATATCAGAAAAT-GACTTCTAGGTGCC
1 TATATATATTTATAAATAAAATACTTATTTATTTAAAAATATCAGAAAATGGACATCCAGGTGCC
*
7133321 TTAAGACAGCACTTTTCTTCAATATTAAAAAATAAATAAATAATTAAAAAATAA
66 TTAAGACAGC-CCTTTCTT-AATATTAAAAAATAAATAAATAATTAAAAAATAA
** * * * *
7133375 TATATA-ATTTATAAAATAGCATATTTATTTATTTAAAAATATCAGAATATGGACATCCAGTTGT
1 TATATATATTTAT-AAATAAAATACTTATTTATTTAAAAATATCAGAAAATGGACATCCAGGTGC
* * * *
7133439 TTTAAGACTGCCCTTTCTTAATATTGAAAATTAAATAAATA
65 CTTAAGACAGCCCTTTCTTAATATTAAAAAATAAATAAATA
7133480 TATATTAAAA
Statistics
Matches: 89, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
117 26 0.29
118 45 0.51
119 18 0.20
ACGTcount: A:0.45, C:0.09, G:0.08, T:0.38
Consensus pattern (117 bp):
TATATATATTTATAAATAAAATACTTATTTATTTAAAAATATCAGAAAATGGACATCCAGGTGCC
TTAAGACAGCCCTTTCTTAATATTAAAAAATAAATAAATAATTAAAAAATAA
Found at i:7133558 original size:2 final size:2
Alignment explanation
Indices: 7133551--7133592 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
7133541 TATTATTTAT
* *
7133551 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7133593 AATAATAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:7133607 original size:14 final size:15
Alignment explanation
Indices: 7133590--7133621 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
7133580 ATTTATTTAT
7133590 ATAAATAATAA-AAA
1 ATAAATAATAATAAA
7133604 AT-AATAATAATAAA
1 ATAAATAATAATAAA
7133618 ATAA
1 ATAA
7133622 TATTGCAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
13 8 0.50
14 7 0.44
15 1 0.06
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (15 bp):
ATAAATAATAATAAA
Found at i:7134978 original size:3 final size:3
Alignment explanation
Indices: 7134958--7135008 Score: 61
Period size: 3 Copynumber: 17.0 Consensus size: 3
7134948 ATTGGGCCTG
*
7134958 TAA T-A TAA TAA -AA TTAA TAA TAAA TAA TAA TAT TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA -TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
7135003 TAA TAA
1 TAA TAA
7135009 ATGTAAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
2 4 0.10
3 33 0.79
4 5 0.12
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:7134986 original size:19 final size:18
Alignment explanation
Indices: 7134958--7135005 Score: 71
Period size: 19 Copynumber: 2.7 Consensus size: 18
7134948 ATTGGGCCTG
7134958 TAAT-ATAATAAAATTAA
1 TAATAATAATAAAATTAA
*
7134975 TAATAAATAATAATATTAA
1 TAAT-AATAATAAAATTAA
7134994 TAATAATAATAA
1 TAATAATAATAA
7135006 TAAATGTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 4 0.14
18 8 0.29
19 16 0.57
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TAATAATAATAAAATTAA
Found at i:7135429 original size:123 final size:113
Alignment explanation
Indices: 7135303--7135827 Score: 698
Period size: 113 Copynumber: 4.6 Consensus size: 113
7135293 ATAGAATCTT
* * *
7135303 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTTCCTCTTCAGATGAGTTATTCTCA
1 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCA
* * ** *
7135368 TTATGAACTTTCTCTGGAAAAGTGTATGCTAATCTATCTCCTTCTGTGATAGA-GTCA
66 TTATGAACTTTCTCTGG-AAA----ATGCTGATCCA--T-C--AAGTGATAGATTTCA
* *
7135425 TGCAAAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTC
1 -GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTC
* *
7135490 ATTATGAACTTTCTCTGG-AAATGCTGATCCATCAAGTGATGGATTTGA
65 ATTATGAACTTTCTCTGGAAAATGCTGATCCATCAAGTGATAGATTTCA
7135538 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTC
* *
7135603 ATTATGAACTTTCTCTGG-AAATGCTGATCCATCAAGTGATGGATTTGA
65 ATTATGAACTTTCTCTGGAAAATGCTGATCCATCAAGTGATAGATTTCA
*
7135651 GCAAAAGGTTGAACAAGCTCTTCTCATTGTGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTC
* * * * *
7135716 ATTATGAACTTTCTCTGG-AAATACTGATTCATCAAGGGATGGATTTGA
65 ATTATGAACTTTCTCTGGAAAATGCTGATCCATCAAGTGATAGATTTCA
* * *
7135764 GCAAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTTAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTC
7135828 TTCTTCTTCC
Statistics
Matches: 380, Mismatches: 20, Indels: 15
0.92 0.05 0.04
Matches are distributed among these distances:
112 68 0.18
113 220 0.58
114 1 0.00
115 1 0.00
117 9 0.02
121 2 0.01
123 79 0.21
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (113 bp):
GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCA
TTATGAACTTTCTCTGGAAAATGCTGATCCATCAAGTGATAGATTTCA
Found at i:7135630 original size:113 final size:112
Alignment explanation
Indices: 7135426--7135827 Score: 705
Period size: 113 Copynumber: 3.6 Consensus size: 112
7135416 ATAGAGTCAT
* *
7135426 GCAAAAGGTTAAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCA
1 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCA
7135491 TTATGAACTTTCTCTGGAAATGCTGATCCATCAAGTGATGGATTTGA
66 TTATGAACTTTCTCTGGAAATGCTGATCCATCAAGTGATGGATTTGA
7135538 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTC
7135603 ATTATGAACTTTCTCTGGAAATGCTGATCCATCAAGTGATGGATTTGA
65 ATTATGAACTTTCTCTGGAAATGCTGATCCATCAAGTGATGGATTTGA
*
7135651 GCAAAAGGTTGAACAAGCTCTTCTCATTGTGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTC
* * *
7135716 ATTATGAACTTTCTCTGGAAATACTGATTCATCAAGGGATGGATTTGA
65 ATTATGAACTTTCTCTGGAAATGCTGATCCATCAAGTGATGGATTTGA
* * *
7135764 GCAAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTTAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTC
7135828 TTCTTCTTCC
Statistics
Matches: 279, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
112 61 0.22
113 218 0.78
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (112 bp):
GCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCA
TTATGAACTTTCTCTGGAAATGCTGATCCATCAAGTGATGGATTTGA
Found at i:7135833 original size:30 final size:30
Alignment explanation
Indices: 7135797--7135857 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
7135787 TCATTATGAA
7135797 CTTCTTCTTCCTCTTTAGATGAGTTCTTCT
1 CTTCTTCTTCCTCTTTAGATGAGTTCTTCT
7135827 CTTCTTCTTCCTCTTTAGATGAGTTCTTCT
1 CTTCTTCTTCCTCTTTAGATGAGTTCTTCT
7135857 C
1 C
7135858 ATTATGAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.10, C:0.28, G:0.10, T:0.52
Consensus pattern (30 bp):
CTTCTTCTTCCTCTTTAGATGAGTTCTTCT
Found at i:7135959 original size:142 final size:143
Alignment explanation
Indices: 7135684--7135969 Score: 538
Period size: 142 Copynumber: 2.0 Consensus size: 143
7135674 TCATTGTGAA
*
7135684 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATACTGATTCATC
1 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATACTGATCCATC
*
7135749 AAGGGATGGATTTGAGCAAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTTA
66 AAGGGATGGATTTGAGCAAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCA
7135814 GATGAGTTCTTCT
131 GATGAGTTCTTCT
*
7135827 CTTCTTCTTCC-TCTTTAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATACTGATCCATC
1 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATACTGATCCATC
7135891 AAGGGATGGATTTGAGCAAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCA
66 AAGGGATGGATTTGAGCAAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCA
7135956 GATGAGTTCTTCT
131 GATGAGTTCTTCT
7135969 C
1 C
7135970 ATTATGAACT
Statistics
Matches: 140, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
142 129 0.92
143 11 0.08
ACGTcount: A:0.23, C:0.20, G:0.15, T:0.41
Consensus pattern (143 bp):
CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAATACTGATCCATC
AAGGGATGGATTTGAGCAAAAGGTTGAATAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCA
GATGAGTTCTTCT
Found at i:7139908 original size:9 final size:9
Alignment explanation
Indices: 7139894--7139973 Score: 90
Period size: 10 Copynumber: 8.6 Consensus size: 9
7139884 CTTGATTCAA
7139894 TTTTTTTCTT
1 TTTTTTTC-T
7139904 TTTTTTTCT
1 TTTTTTTCT
*
7139913 TTTTTTTAAT
1 TTTTTTT-CT
7139923 TTTTTTTCCT
1 TTTTTTT-CT
*
7139933 TTTTTTCCT
1 TTTTTTTCT
7139942 TTTTTTTC-
1 TTTTTTTCT
*
7139950 TTTTTTACT
1 TTTTTTTCT
7139959 CTTTTTTTCT
1 -TTTTTTTCT
7139969 TTTTT
1 TTTTT
7139974 CCTTTCTTTG
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
8 7 0.12
9 22 0.37
10 31 0.52
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:7139918 original size:19 final size:19
Alignment explanation
Indices: 7139894--7139973 Score: 99
Period size: 19 Copynumber: 4.3 Consensus size: 19
7139884 CTTGATTCAA
7139894 TTTTTTTCTTTTTTTTTCT
1 TTTTTTTCTTTTTTTTTCT
** *
7139913 TTTTTTTAATTTTTTTTCC
1 TTTTTTTCTTTTTTTTTCT
*
7139932 TTTTTTTCCTTTTTTTTC-
1 TTTTTTTCTTTTTTTTTCT
* *
7139950 TTTTTTACTCTTTTTTTCT
1 TTTTTTTCTTTTTTTTTCT
7139969 TTTTT
1 TTTTT
7139974 CCTTTCTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
18 15 0.29
19 37 0.71
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTTTTCTTTTTTTTTCT
Found at i:7144061 original size:26 final size:28
Alignment explanation
Indices: 7144031--7144091 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
7144021 AAACATTAAT
7144031 AAAATAAT-A-TACATATAAATA-TTATG
1 AAAATAATAAGTACATATAAA-ACTTATG
* *
7144057 AAAATAATAAGTATATATAAAACTTTTG
1 AAAATAATAAGTACATATAAAACTTATG
7144085 AAAATAA
1 AAAATAA
7144092 AGAATTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 8 0.27
27 2 0.07
28 20 0.67
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (28 bp):
AAAATAATAAGTACATATAAAACTTATG
Found at i:7144718 original size:118 final size:122
Alignment explanation
Indices: 7144586--7144821 Score: 295
Period size: 119 Copynumber: 2.0 Consensus size: 122
7144576 TATATTAATT
* * * *
7144586 TATATATATTTAT-AAATAAAATACTTATTTATTTAGAAATATCAGAAAA-GGACTTCTAGGTGC
1 TATATATATTTATAAAATAAAATACTTATTTATTTAAAAATATCAAAAAATGGACATCCAGGTGC
*
7144649 CTTAAGACAGCTCTTTTCTTCAATATTAAAAAATAAATAAA-A-A-ATTAAAAAAATAA
66 CTTAAGACAG-TCATTTCTT-AATATTAAAAAATAAATAAATATATATTAAAAAAATAA
** * * *
7144705 TATATA-ATTTATAAAATAGGATATTTATTTATTTAAAAATATCAAAAAATGGACATCCAGTTGT
1 TATATATATTTATAAAATAAAATACTTATTTATTTAAAAATATCAAAAAATGGACATCCAGGTGC
* * *
7144769 TTTAAGACTGTCATTTCTTAATATTGAAAAATAAATAAATATATATTAAAAAA
66 CTTAAGACAGTCATTTCTTAATATTAAAAAATAAATAAATATATATTAAAAAA
7144822 TGATTATTAA
Statistics
Matches: 99, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
118 25 0.25
119 46 0.46
120 19 0.19
121 9 0.09
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (122 bp):
TATATATATTTATAAAATAAAATACTTATTTATTTAAAAATATCAAAAAATGGACATCCAGGTGC
CTTAAGACAGTCATTTCTTAATATTAAAAAATAAATAAATATATATTAAAAAAATAA
Found at i:7146280 original size:3 final size:3
Alignment explanation
Indices: 7146260--7146310 Score: 61
Period size: 3 Copynumber: 17.0 Consensus size: 3
7146250 ATTGGGCCTG
*
7146260 TAA T-A TAA TAA -AA TTAA TAA TAAA TAA TAA TAT TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA -TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
7146305 TAA TAA
1 TAA TAA
7146311 ATGTAAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
2 4 0.10
3 33 0.79
4 5 0.12
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:7146288 original size:19 final size:18
Alignment explanation
Indices: 7146260--7146307 Score: 71
Period size: 19 Copynumber: 2.7 Consensus size: 18
7146250 ATTGGGCCTG
7146260 TAAT-ATAATAAAATTAA
1 TAATAATAATAAAATTAA
*
7146277 TAATAAATAATAATATTAA
1 TAAT-AATAATAAAATTAA
7146296 TAATAATAATAA
1 TAATAATAATAA
7146308 TAAATGTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 4 0.14
18 8 0.29
19 16 0.57
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
TAATAATAATAAAATTAA
Found at i:7150287 original size:121 final size:121
Alignment explanation
Indices: 7149911--7150596 Score: 1304
Period size: 121 Copynumber: 5.7 Consensus size: 121
7149901 TTTTACAAGT
* * *
7149911 CCAAGTTTTACGTATATACGTGTTTAAAATTTGTTAATATATTTTAAATATTCTTCCATTCATAT
1 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
7149976 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
66 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
7150032 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATA-TTTAAATATTCTTCCATTCATAT
1 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
7150096 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
66 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
7150152 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
1 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
7150217 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
66 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
7150273 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
1 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
7150338 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
66 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
7150394 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
1 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
7150459 AGAGTTGTCTCAAATATTTG-TTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
66 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
*
7150514 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATACTTCCATTCATAT
1 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
* *
7150579 AGAATTGCCTCAAATATT
66 AGAGTTGTCTCAAATATT
7150597 GTCAGGGTAT
Statistics
Matches: 558, Mismatches: 6, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
120 235 0.42
121 323 0.58
ACGTcount: A:0.31, C:0.13, G:0.08, T:0.47
Consensus pattern (121 bp):
CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
Found at i:7150485 original size:241 final size:242
Alignment explanation
Indices: 7149911--7150596 Score: 1304
Period size: 241 Copynumber: 2.8 Consensus size: 242
7149901 TTTTACAAGT
* * *
7149911 CCAAGTTTTACGTATATACGTGTTTAAAATTTGTTAATATATTTTAAATATTCTTCCATTCATAT
1 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
7149976 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTT
66 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTT
7150041 ACGCATATACATGTTTAAAATTTGTTCATATA-TTTAAATATTCTTCCATTCATATAGAGTTGTC
131 ACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATATAGAGTTGTC
7150105 TCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
196 TCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
7150152 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
1 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
7150217 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTT
66 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTT
7150282 ACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATATAGAGTTGTC
131 ACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATATAGAGTTGTC
7150347 TCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
196 TCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
7150394 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
1 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
7150459 AGAGTTGTCTCAAATATTTG-TTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTT
66 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTT
* * *
7150523 ACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATACTTCCATTCATATAGAATTGCC
131 ACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATATAGAGTTGTC
7150588 TCAAATATT
196 TCAAATATT
7150597 GTCAGGGTAT
Statistics
Matches: 438, Mismatches: 6, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
241 274 0.63
242 164 0.37
ACGTcount: A:0.31, C:0.13, G:0.08, T:0.47
Consensus pattern (242 bp):
CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTT
ACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATATAGAGTTGTC
TCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
Found at i:7150576 original size:362 final size:362
Alignment explanation
Indices: 7149911--7150596 Score: 1302
Period size: 362 Copynumber: 1.9 Consensus size: 362
7149901 TTTTACAAGT
* *
7149911 CCAAGTTTTACGTATATACGTGTTTAAAATTTGTTAATATATTTTAAATATTCTTCCATTCATAT
1 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTAATATATTTTAAATATTCTTCCATTCATAT
7149976 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTT
66 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTT
7150041 ACGCATATACATGTTTAAAATTTGTTCATATATTTAAATATTCTTCCATTCATATAGAGTTGTCT
131 ACGCATATACATGTTTAAAATTTGTTCATATATTTAAATATTCTTCCATTCATATAGAGTTGTCT
7150106 CAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTTACGCATATAC
196 CAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTTACGCATATAC
* * *
7150171 ATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATATAGAGTTGTCTCAAATATTT
261 ATGTTTAAAATTTGTTCATATATTTTAAATATACTTCCATTCATATAGAATTGCCTCAAATATTT
7150236 GTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
326 GTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
*
7150273 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATAT
1 CCAAGTTTTACGCATATACATGTTTAAAATTTGTTAATATATTTTAAATATTCTTCCATTCATAT
7150338 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTT
66 AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTT
7150403 ACGCATATACATGTTTAAAATTTGTTCATATATTTTAAATATTCTTCCATTCATATAGAGTTGTC
131 ACGCATATACATGTTTAAAATTTGTTCATATA-TTTAAATATTCTTCCATTCATATAGAGTTGTC
7150468 TCAAATATTTG-TTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTTACGCATATA
195 TCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTTACGCATATA
7150532 CATGTTTAAAATTTGTTCATATATTTTAAATATACTTCCATTCATATAGAATTGCCTCAAATATT
260 CATGTTTAAAATTTGTTCATATATTTTAAATATACTTCCATTCATATAGAATTGCCTCAAATATT
7150597 GTCAGGGTAT
Statistics
Matches: 317, Mismatches: 6, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
362 274 0.86
363 43 0.14
ACGTcount: A:0.31, C:0.13, G:0.08, T:0.47
Consensus pattern (362 bp):
CCAAGTTTTACGCATATACATGTTTAAAATTTGTTAATATATTTTAAATATTCTTCCATTCATAT
AGAGTTGTCTCAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTT
ACGCATATACATGTTTAAAATTTGTTCATATATTTAAATATTCTTCCATTCATATAGAGTTGTCT
CAAATATTTGTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAACCCAAGTTTTACGCATATAC
ATGTTTAAAATTTGTTCATATATTTTAAATATACTTCCATTCATATAGAATTGCCTCAAATATTT
GTTTTCGTTTTAATAATTTAATTATGTTTTCTCAAAC
Found at i:7150829 original size:13 final size:13
Alignment explanation
Indices: 7150813--7150837 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7150803 TAAATAATAA
7150813 TTTTTTTTTGAAT
1 TTTTTTTTTGAAT
7150826 TTTTTTTTTGAA
1 TTTTTTTTTGAA
7150838 AACATCCTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (13 bp):
TTTTTTTTTGAAT
Found at i:7151094 original size:3 final size:3
Alignment explanation
Indices: 7151086--7151114 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7151076 AAGAACTGTT
7151086 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7151115 TAAAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7152444 original size:148 final size:148
Alignment explanation
Indices: 7152171--7152463 Score: 509
Period size: 148 Copynumber: 2.0 Consensus size: 148
7152161 AAACTATTTA
* * *
7152171 AATTAGAATCAAATAATATTATAGTATTATAAATATTTATAGTTAAATTTAAACAGAAACTCGAA
1 AATTAGAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAACAGAAACTCGAA
*
7152236 AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATAAAAAATTTTGTGAGTCAACT
66 AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATAAAAAATTTTGCGAGTCAACT
7152301 ATTTTATAAACTGAACTG
131 ATTTTATAAACTGAACTG
*
7152319 AATTAGAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAACAGAAACTTGAA
1 AATTAGAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAACAGAAACTCGAA
7152384 AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATCGAAAAAA-TTT-CGAGTCAA
66 AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAAT--AAAAAATTTTGCGAGTCAA
7152447 CTATTTTATAAACTGAA
129 CTATTTTATAAACTGAA
7152464 TTGAGTATTT
Statistics
Matches: 138, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
148 129 0.93
149 3 0.02
150 6 0.04
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.37
Consensus pattern (148 bp):
AATTAGAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAACAGAAACTCGAA
AATTCAATTCAATTCGACTTGATTTAAATTTTATAAACTCAAATAAAAAATTTTGCGAGTCAACT
ATTTTATAAACTGAACTG
Found at i:7152649 original size:35 final size:35
Alignment explanation
Indices: 7152610--7152686 Score: 109
Period size: 35 Copynumber: 2.2 Consensus size: 35
7152600 GTTGGGTATA
* *
7152610 TAATTGAAGTATTTTGAAATTTGAGGTTTAGAATG
1 TAATTGAAGCATTTTGAAATTTGAGGTTTAAAATG
* * *
7152645 TAATTGAAGCATTTTGGATTTTGGGGTTTAAAATG
1 TAATTGAAGCATTTTGAAATTTGAGGTTTAAAATG
7152680 TAATTGA
1 TAATTGA
7152687 TGACTGTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.32, C:0.01, G:0.23, T:0.43
Consensus pattern (35 bp):
TAATTGAAGCATTTTGAAATTTGAGGTTTAAAATG
Found at i:7154776 original size:21 final size:21
Alignment explanation
Indices: 7154752--7154791 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7154742 TGATACACCT
7154752 ATGATGATCTTATTGATGTTA
1 ATGATGATCTTATTGATGTTA
*
7154773 ATGATTATCTTATTGATGT
1 ATGATGATCTTATTGATGT
7154792 GAAATTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.28, C:0.05, G:0.17, T:0.50
Consensus pattern (21 bp):
ATGATGATCTTATTGATGTTA
Found at i:7158373 original size:15 final size:15
Alignment explanation
Indices: 7158328--7158375 Score: 78
Period size: 15 Copynumber: 3.2 Consensus size: 15
7158318 TTAGCTGGGT
*
7158328 GGGCGGATGTGGGGC
1 GGGCGGATGCGGGGC
*
7158343 AGGCGGATGCGGGGC
1 GGGCGGATGCGGGGC
7158358 GGGCGGATGCGGGGC
1 GGGCGGATGCGGGGC
7158373 GGG
1 GGG
7158376 TAATGTCTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.08, C:0.17, G:0.67, T:0.08
Consensus pattern (15 bp):
GGGCGGATGCGGGGC
Found at i:7171564 original size:13 final size:13
Alignment explanation
Indices: 7171546--7171586 Score: 57
Period size: 12 Copynumber: 3.2 Consensus size: 13
7171536 CGTCGAATTT
7171546 ATTTTAAAAAATA
1 ATTTTAAAAAATA
7171559 ATTTT-AAAAATA
1 ATTTTAAAAAATA
*
7171571 ATTTAATAAAAATA
1 ATTTTA-AAAAATA
7171585 AT
1 AT
7171587 AATAAAAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
12 11 0.44
13 5 0.20
14 9 0.36
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
ATTTTAAAAAATA
Found at i:7175643 original size:34 final size:34
Alignment explanation
Indices: 7175605--7175816 Score: 109
Period size: 34 Copynumber: 5.6 Consensus size: 34
7175595 TTTCATGCCC
7175605 ATAATGCACCCATATGTATTATTCTTTTATGCTG
1 ATAATGCACCCATATGTATTATTCTTTTATGCTG
* * **
7175639 ATAATGCAACCATATGCATTTTAACTTTGGCATCCTTTCATGCCA
1 ATAATGCACCCATATG--TATT-A--TT--C-T--TTT-ATGCTG
* *
7175684 ATAATGCACCCATATGAATTATTCTTTTATGTTG
1 ATAATGCACCCATATGTATTATTCTTTTATGCTG
* **
7175718 ATAATGCACCCATATGCATTTCAACTTTGGCATCCTTTCATGCCA
1 ATAATGCACCCATATGTA-TT--A--TT--C-T--TTT-ATGCTG
* * * *
7175763 ATAATGCACCTATATGCATTATTCTCTTATACTG
1 ATAATGCACCCATATGTATTATTCTTTTATGCTG
7175797 ATAATGCACCCATATGTATT
1 ATAATGCACCCATATGTATT
7175817 TTAGCTAAGG
Statistics
Matches: 135, Mismatches: 21, Indels: 44
0.68 0.10 0.22
Matches are distributed among these distances:
34 56 0.41
35 7 0.05
36 3 0.02
37 4 0.03
38 2 0.01
39 4 0.03
40 4 0.03
41 2 0.01
42 4 0.03
43 2 0.01
44 8 0.06
45 39 0.29
ACGTcount: A:0.29, C:0.22, G:0.11, T:0.39
Consensus pattern (34 bp):
ATAATGCACCCATATGTATTATTCTTTTATGCTG
Found at i:7175680 original size:79 final size:79
Alignment explanation
Indices: 7175549--7175871 Score: 441
Period size: 79 Copynumber: 4.1 Consensus size: 79
7175539 TTATAGTATA
* * * *
7175549 CTTTTATGTTGGTAATGC-ACCTATATGCATTTCAACTTTGGCATCATTTCATGCCCATAATGCA
1 CTTTTATGCTGATAATGCAACC-ATATGCATTTCAACTTTGGCATCCTTTCATGCCAATAATGCA
*
7175613 CCCATATGTATTATT
65 CCCATATGCATTATT
*
7175628 CTTTTATGCTGATAATGCAACCATATGCATTTTAACTTTGGCATCCTTTCATGCCAATAATGCAC
1 CTTTTATGCTGATAATGCAACCATATGCATTTCAACTTTGGCATCCTTTCATGCCAATAATGCAC
*
7175693 CCATATGAATTATT
66 CCATATGCATTATT
* *
7175707 CTTTTATGTTGATAATGCACCCATATGCATTTCAACTTTGGCATCCTTTCATGCCAATAATGCAC
1 CTTTTATGCTGATAATGCAACCATATGCATTTCAACTTTGGCATCCTTTCATGCCAATAATGCAC
*
7175772 CTATATGCATTATT
66 CCATATGCATTATT
* * * * * * ** * **
7175786 CTCTTATACTGATAATGCACCCATATGTATTTTAGCTAAGGTATCCTTTCACACCAATAATGCAC
1 CTTTTATGCTGATAATGCAACCATATGCATTTCAACTTTGGCATCCTTTCATGCCAATAATGCAC
7175851 CCATATGCATTATT
66 CCATATGCATTATT
7175865 CTTTTAT
1 CTTTTAT
7175872 CATTTGTTCT
Statistics
Matches: 219, Mismatches: 24, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
79 216 0.99
80 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.39
Consensus pattern (79 bp):
CTTTTATGCTGATAATGCAACCATATGCATTTCAACTTTGGCATCCTTTCATGCCAATAATGCAC
CCATATGCATTATT
Found at i:7175688 original size:45 final size:45
Alignment explanation
Indices: 7175639--7175782 Score: 132
Period size: 45 Copynumber: 3.4 Consensus size: 45
7175629 TTTTATGCTG
7175639 ATAATGCAACCATATGCATTTTAACTTTGGCATCCTTTCATGCCA
1 ATAATGCAACCATATGCATTTTAACTTTGGCATCCTTTCATGCCA
* * ***
7175684 ATAATGCACCCATATG-A-ATT-A--TT--C-T--TTT-ATGTTG
1 ATAATGCAACCATATGCATTTTAACTTTGGCATCCTTTCATGCCA
* *
7175718 ATAATGCACCCATATGCATTTCAACTTTGGCATCCTTTCATGCCA
1 ATAATGCAACCATATGCATTTTAACTTTGGCATCCTTTCATGCCA
7175763 ATAATGC-ACCTATATGCATT
1 ATAATGCAACC-ATATGCATT
7175783 ATTCTCTTAT
Statistics
Matches: 76, Mismatches: 11, Indels: 24
0.68 0.10 0.22
Matches are distributed among these distances:
34 19 0.25
35 4 0.05
36 1 0.01
37 2 0.03
38 1 0.01
39 2 0.03
40 2 0.03
41 1 0.01
42 2 0.03
43 2 0.03
44 6 0.08
45 34 0.45
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (45 bp):
ATAATGCAACCATATGCATTTTAACTTTGGCATCCTTTCATGCCA
Found at i:7175843 original size:158 final size:158
Alignment explanation
Indices: 7175549--7175871 Score: 493
Period size: 158 Copynumber: 2.0 Consensus size: 158
7175539 TTATAGTATA
* * *
7175549 CTTTTATGTTGGTAATGCACCTATATGCATTTCAACTTTGGCATCATTTCATGCCCATAATGCAC
1 CTTTTATGTTGATAATGCACCCATATGCATTTCAACTTTGGCATCATTTCATGCCAATAATGCAC
* * * **
7175614 CCATATGTATTATTCTTTTATGCTGATAATGCAACCATATGCATTTTAACTTTGGCATCCTTTCA
66 CCATATGCATTATTCTCTTATACTGATAATGCAACCATATGCATTTTAACTAAGGCATCCTTTCA
**
7175679 TGCCAATAATGCACCCATATGAATTATT
131 CACCAATAATGCACCCATATGAATTATT
*
7175707 CTTTTATGTTGATAATGCACCCATATGCATTTCAACTTTGGCATCCTTTCATGCCAATAATGCAC
1 CTTTTATGTTGATAATGCACCCATATGCATTTCAACTTTGGCATCATTTCATGCCAATAATGCAC
* * * * *
7175772 CTATATGCATTATTCTCTTATACTGATAATGCACCCATATGTATTTTAGCTAAGGTATCCTTTCA
66 CCATATGCATTATTCTCTTATACTGATAATGCAACCATATGCATTTTAACTAAGGCATCCTTTCA
*
7175837 CACCAATAATGCACCCATATGCATTATT
131 CACCAATAATGCACCCATATGAATTATT
7175865 CTTTTAT
1 CTTTTAT
7175872 CATTTGTTCT
Statistics
Matches: 148, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
158 148 1.00
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.39
Consensus pattern (158 bp):
CTTTTATGTTGATAATGCACCCATATGCATTTCAACTTTGGCATCATTTCATGCCAATAATGCAC
CCATATGCATTATTCTCTTATACTGATAATGCAACCATATGCATTTTAACTAAGGCATCCTTTCA
CACCAATAATGCACCCATATGAATTATT
Found at i:7176370 original size:54 final size:55
Alignment explanation
Indices: 7176305--7176424 Score: 179
Period size: 55 Copynumber: 2.2 Consensus size: 55
7176295 ATCCGTTTCG
* * * * *
7176305 GGTATCAATACCAATATTAGGTTCGATGTTT-CTTGGTATCGATACCCTTACCAT
1 GGTATCGATACCAAAATTAGATTCGATGTTTGCTTGGTATCGATACCCCTACAAT
*
7176359 GGTATCGATACCAAAATTAGATTTGATGTTTGCTTGGTATCGATACCCCTACAAT
1 GGTATCGATACCAAAATTAGATTCGATGTTTGCTTGGTATCGATACCCCTACAAT
7176414 GGTATCGATAC
1 GGTATCGATAC
7176425 TACCTTAATG
Statistics
Matches: 59, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
54 27 0.46
55 32 0.54
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (55 bp):
GGTATCGATACCAAAATTAGATTCGATGTTTGCTTGGTATCGATACCCCTACAAT
Found at i:7179445 original size:22 final size:22
Alignment explanation
Indices: 7179417--7179463 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
7179407 TCATGACTGA
7179417 TTCCATTAAACAAGAGTTTTGT
1 TTCCATTAAACAAGAGTTTTGT
* *
7179439 TTCCATTAAGCAAGAGTTTTTT
1 TTCCATTAAACAAGAGTTTTGT
7179461 TTC
1 TTC
7179464 GAACAATGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.45
Consensus pattern (22 bp):
TTCCATTAAACAAGAGTTTTGT
Found at i:7184672 original size:21 final size:21
Alignment explanation
Indices: 7184647--7184689 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7184637 CATTAATGCC
* *
7184647 TTTGTTGAAGCTATGAAATCT
1 TTTGTTGAAGCCATAAAATCT
*
7184668 TTTGTTGAGGCCATAAAATCT
1 TTTGTTGAAGCCATAAAATCT
7184689 T
1 T
7184690 GTAGTGAAGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.42
Consensus pattern (21 bp):
TTTGTTGAAGCCATAAAATCT
Found at i:7193845 original size:13 final size:13
Alignment explanation
Indices: 7193775--7193859 Score: 74
Period size: 13 Copynumber: 6.8 Consensus size: 13
7193765 TATTACAAAT
*
7193775 AATAATACATATAA
1 AATAATA-ATATAG
*
7193789 AATAAT-ATCTAG
1 AATAATAATATAG
7193801 CAATAATAATAT--
1 -AATAATAATATAG
7193813 AATAATAA-ATAG
1 AATAATAATATAG
*
7193825 TA-AATAATAT-G
1 AATAATAATATAG
7193836 AAATAATAATATAG
1 -AATAATAATATAG
7193850 AATAATAATA
1 AATAATAATA
7193860 AATAATATCT
Statistics
Matches: 58, Mismatches: 5, Indels: 17
0.73 0.06 0.21
Matches are distributed among these distances:
10 2 0.03
11 14 0.24
12 8 0.14
13 24 0.41
14 10 0.17
ACGTcount: A:0.61, C:0.04, G:0.05, T:0.31
Consensus pattern (13 bp):
AATAATAATATAG
Found at i:7194660 original size:23 final size:23
Alignment explanation
Indices: 7194634--7194678 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
7194624 CAAGCTTTAT
*
7194634 ATGTCATTTACTTTTCATGACAC
1 ATGTCATTTACTTTTCAAGACAC
7194657 ATGTCATTTACTTTTCAAGACA
1 ATGTCATTTACTTTTCAAGACA
7194679 TTTAGATAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.29, C:0.20, G:0.09, T:0.42
Consensus pattern (23 bp):
ATGTCATTTACTTTTCAAGACAC
Found at i:7196710 original size:21 final size:20
Alignment explanation
Indices: 7196664--7196715 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
7196654 TCAACAGTGA
*
7196664 AGGGATCAATCCTTTTTGAG
1 AGGGATCAATCCTTTTTCAG
* * *
7196684 ATGGATAAATCCTTTTTCACT
1 AGGGATCAATCCTTTTTCA-G
7196705 AGGGATCAATC
1 AGGGATCAATC
7196716 ATATGCTGGA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (20 bp):
AGGGATCAATCCTTTTTCAG
Found at i:7202196 original size:36 final size:34
Alignment explanation
Indices: 7202156--7202281 Score: 105
Period size: 35 Copynumber: 3.6 Consensus size: 34
7202146 AAAATTAAAA
*
7202156 ATATTTATTATCTTTTTAAACTAGAATATTAATTAG
1 ATATTTATTATCTTTTTAAA-TAGAATATTAA-GAG
* * *
7202192 ATATTTA-TATCTTTTTAAATATATCAAATTAAGAT
1 ATATTTATTATCTTTTTAAATAGA--ATATTAAGAG
* * *
7202227 ATATTTATTATCTTATTAAATTTGAATATTAA-AA
1 ATATTTATTATCTTTTTAAA-TAGAATATTAAGAG
* *
7202261 ATA-TCAATATCTTTTTAAATA
1 ATATTTATTATCTTTTTAAATA
7202282 TTTCAAATTA
Statistics
Matches: 73, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
32 1 0.01
33 13 0.18
34 7 0.10
35 26 0.36
36 24 0.33
37 2 0.03
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.49
Consensus pattern (34 bp):
ATATTTATTATCTTTTTAAATAGAATATTAAGAG
Found at i:7202209 original size:71 final size:68
Alignment explanation
Indices: 7202147--7202373 Score: 283
Period size: 71 Copynumber: 3.2 Consensus size: 68
7202137 AAGTTTTTTA
* * * **
7202147 AAATTAAAAATATTTATTATCTTTTTAAACTAGAATATTAATTAGATATTTATATCTTTTTAAAT
1 AAATTAAAAATATTTATTATCTTTTTAAATTTGAATATTAA--AAATATCAATATCTTTTTAAAT
*
7202212 ATATC
64 ATTTC
* *
7202217 AAATTAAGATATATTTATTATCTTATTAAATTTGAATATTAAAAATATCAATATCTTTTTAAATA
1 AAATTAA-AAATATTTATTATCTTTTTAAATTTGAATATTAAAAATATCAATATCTTTTTAAATA
7202282 TTTC
65 TTTC
* *
7202286 AAATTAAAATCTAATTTATTATCTTTTTTAAATTTGAATATTAAAAATATATCAATATCTTTTTG
1 AAATTAAAA-AT-ATTTATTATC-TTTTTAAATTTGAATATT-AAAA-ATATCAATATCTTTTTA
7202351 AATATTTC
61 AATATTTC
7202359 AAATTAAAAGATATT
1 AAATTAAAA-ATATT
7202374 ATCTATTAAA
Statistics
Matches: 137, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
68 1 0.01
69 31 0.23
70 17 0.12
71 47 0.34
72 7 0.05
73 34 0.25
ACGTcount: A:0.44, C:0.06, G:0.03, T:0.48
Consensus pattern (68 bp):
AAATTAAAAATATTTATTATCTTTTTAAATTTGAATATTAAAAATATCAATATCTTTTTAAATAT
TTC
Found at i:7202365 original size:36 final size:36
Alignment explanation
Indices: 7202198--7202373 Score: 157
Period size: 36 Copynumber: 4.9 Consensus size: 36
7202188 TTAGATATTT
* * *
7202198 ATATCTTTTTAAATATATCAAATTAAGATATATTTA
1 ATATCTTTTTAAATATTTCAAATTAAAATATATTCA
* * *
7202234 TTATCTTATT-AA-ATTTGAATATTAAAA-ATA-TCA
1 ATATCTTTTTAAATATTTCAA-ATTAAAATATATTCA
* *
7202267 ATATCTTTTTAAATATTTCAAATTAAAATCTAATTTA
1 ATATCTTTTTAAATATTTCAAATTAAAATAT-ATTCA
* * *
7202304 TTATCTTTTTTAA-ATTTGAATATTAAAA-ATATATCA
1 ATATCTTTTTAAATATTTCAA-ATTAAAATATAT-TCA
* *
7202340 ATATCTTTTTGAATATTTCAAATTAAAAGATATT
1 ATATCTTTTTAAATATTTCAAATTAAAATATATT
7202374 ATCTATTAAA
Statistics
Matches: 111, Mismatches: 19, Indels: 20
0.74 0.13 0.13
Matches are distributed among these distances:
33 10 0.09
34 17 0.15
35 17 0.15
36 37 0.33
37 30 0.27
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.48
Consensus pattern (36 bp):
ATATCTTTTTAAATATTTCAAATTAAAATATATTCA
Found at i:7208183 original size:36 final size:36
Alignment explanation
Indices: 7208087--7208201 Score: 132
Period size: 35 Copynumber: 3.3 Consensus size: 36
7208077 ATATTAAAAG
7208087 ATATTAAAAGATA-CAATATCTTTTTGAATATTT-A
1 ATATTAAAAGATATCAATATCTTTTTGAATATTTGA
* * *
7208121 AAATTAAAAGATATTCATTAT-GTTTTGAA-ATTTGA
1 ATATTAAAAGATA-TCAATATCTTTTTGAATATTTGA
* *
7208156 ATATTAAAAAGAGATCAATATCTTTTTGAATGTTTGA
1 ATATT-AAAAGATATCAATATCTTTTTGAATATTTGA
7208193 A-ATTAAAAG
1 ATATTAAAAG
7208202 CTATTATCTG
Statistics
Matches: 67, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
34 16 0.24
35 23 0.34
36 22 0.33
37 6 0.09
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.41
Consensus pattern (36 bp):
ATATTAAAAGATATCAATATCTTTTTGAATATTTGA
Found at i:7209422 original size:44 final size:44
Alignment explanation
Indices: 7209373--7209460 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
7209363 AAAATAGTAA
*
7209373 CTCTAACAGATATAATGTATCATAATATATG-TATGAAAAATAAT
1 CTCTAACAGATATAATATATCATAATATATGTTA-GAAAAATAAT
*
7209417 CTCTAACATATATAATATATCATAATATATGTTAGAAAAATAAT
1 CTCTAACAGATATAATATATCATAATATATGTTAGAAAAATAAT
7209461 GTTAATGAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 39 0.95
45 2 0.05
ACGTcount: A:0.49, C:0.09, G:0.07, T:0.35
Consensus pattern (44 bp):
CTCTAACAGATATAATATATCATAATATATGTTAGAAAAATAAT
Found at i:7214067 original size:2 final size:2
Alignment explanation
Indices: 7214060--7214104 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
7214050 AACTAATTTT
7214060 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7214102 TA T
1 TA T
7214105 CATTATGAGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7215082 original size:3 final size:3
Alignment explanation
Indices: 7215029--7215066 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
7215019 GCCTGCAAAC
7215029 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
7215067 TTTAGTTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7215530 original size:134 final size:134
Alignment explanation
Indices: 7215191--7215534 Score: 465
Period size: 134 Copynumber: 2.6 Consensus size: 134
7215181 AATGTTGTTT
* * * *
7215191 CATTCCACTGTTCTTCCGGGGAGATTGAATCAGAATCGATTTACTTTACTGCTCTTCAGGAAGAC
1 CATTCCACTGTTCTTCAGGGAAGATTGAATCAGAATCGATTTGCTTTACTTCTCTTCAGGAAGAC
* * * * *
7215256 CAAATATGAAATAAGAAGAATATGCTCCACTACTCTTTAGGGGAGATCAGACTCGAGAAAACTTT
66 CAAATCTGAAAGAAGAAGAATATACTCCACTACTCTTTAAGGGAGATCAGACTCAAGAAAACTTT
7215321 GATC
131 GATC
* * * *
7215325 CACTT-TACTATTCTTCAGTGAAGATTGAATCAGAATCGATTTGATTTACTTCTCTTCAGGAAGA
1 CA-TTCCACTGTTCTTCAGGGAAGATTGAATCAGAATCGATTTGCTTTACTTCTCTTCAGGAAGA
* *
7215389 CCAAATCTGAAAGAAGAAGAATCTACTCCACTACTCTTTAAGGGAGATCAGACTCAAGAAATCTT
65 CCAAATCTGAAAGAAGAAGAATATACTCCACTACTCTTTAAGGGAGATCAGACTCAAGAAAACTT
7215454 TGATC
130 TGATC
* * * * * * *
7215459 TATTCCACTGCTCTTCAGGGAAGATTGAATCAAAATCGATTTGCTTCACTTATCTTCAAGAAGAT
1 CATTCCACTGTTCTTCAGGGAAGATTGAATCAGAATCGATTTGCTTTACTTCTCTTCAGGAAGAC
*
7215524 CGAATCTGAAA
66 CAAATCTGAAA
7215535 ATCAAACATT
Statistics
Matches: 181, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
133 2 0.01
134 177 0.98
135 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (134 bp):
CATTCCACTGTTCTTCAGGGAAGATTGAATCAGAATCGATTTGCTTTACTTCTCTTCAGGAAGAC
CAAATCTGAAAGAAGAAGAATATACTCCACTACTCTTTAAGGGAGATCAGACTCAAGAAAACTTT
GATC
Found at i:7215880 original size:20 final size:21
Alignment explanation
Indices: 7215843--7215894 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
7215833 ATCATTAATA
7215843 TTTTGAGAAAGTGAAAAAGGT
1 TTTTGAGAAAGTGAAAAAGGT
7215864 TTTTGAGAAAGTG-AAAAGGT
1 TTTTGAGAAAGTGAAAAAGGT
* *
7215884 CTTTAAGAAAG
1 TTTTGAGAAAG
7215895 AAAAAATTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.42, C:0.02, G:0.27, T:0.29
Consensus pattern (21 bp):
TTTTGAGAAAGTGAAAAAGGT
Found at i:7215900 original size:20 final size:20
Alignment explanation
Indices: 7215856--7215900 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
7215846 TGAGAAAGTG
* * *
7215856 AAAAAGGTTTTTGAGAAAGT
1 AAAAAGGTCTTTAAGAAAGA
*
7215876 GAAAAGGTCTTTAAGAAAGA
1 AAAAAGGTCTTTAAGAAAGA
7215896 AAAAA
1 AAAAA
7215901 TTAGAACTTT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.02, G:0.22, T:0.22
Consensus pattern (20 bp):
AAAAAGGTCTTTAAGAAAGA
Found at i:7216261 original size:50 final size:51
Alignment explanation
Indices: 7216135--7216269 Score: 168
Period size: 50 Copynumber: 2.6 Consensus size: 51
7216125 ATAACATTAC
* * * *
7216135 AAAAAGATTAACTCCTCTACACGAGAAAGTCAAGTTGAGGAATGATACTACT
1 AAAAAG-TTAACTCCTCTCCGCAAGAAAGTCAAGTTGAGGAATGACACTACT
7216187 AAAAAGTTAACTCCTCTCCGCAAGAAAGTCAAGTTGA-GAATGACA-TCACT
1 AAAAAGTTAACTCCTCTCCGCAAGAAAGTCAAGTTGAGGAATGACACT-ACT
* *
7216237 AAAAAGTTGACTCTTCTTCC-CAAGAAAGTCAAG
1 AAAAAGTTAACTCCTC-TCCGCAAGAAAGTCAAG
7216270 AATAACACCG
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
49 1 0.01
50 37 0.49
51 31 0.41
52 6 0.08
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (51 bp):
AAAAAGTTAACTCCTCTCCGCAAGAAAGTCAAGTTGAGGAATGACACTACT
Found at i:7216414 original size:45 final size:44
Alignment explanation
Indices: 7216363--7216579 Score: 256
Period size: 45 Copynumber: 4.8 Consensus size: 44
7216353 AGTTAAGAAC
* * *
7216363 CACTAAAATG-TTGACTTTTCTTGAAGAGAAAGTCAAGTAGGACAA
1 CACTAAAA-GATTGACTTCTCTT-AAGAGAAAGTCAAGGAAGACAA
* **
7216408 CACTAAAAGATCGACTTCTCTTCGTGAGAAAGTCAAGGAAGACAA
1 CACTAAAAGATTGACTTCTCTT-AAGAGAAAGTCAAGGAAGACAA
* * *
7216453 CAATAAAAGATTGACTCCTCTTCACGAGAAAGTCAAGGAAGACAA
1 CACTAAAAGATTGACTTCTCTT-AAGAGAAAGTCAAGGAAGACAA
* *
7216498 CACTAAAAGATTGACTCCTCTTAATGAGAAAGTCAAGGATGACAA
1 CACTAAAAGATTGACTTCTCTTAA-GAGAAAGTCAAGGAAGACAA
* *
7216543 AACTGAAAGATTGACTTCTCTTAACGAGAAAGTCAAG
1 CACTAAAAGATTGACTTCTCTTAA-GAGAAAGTCAAG
7216580 AATAACATTG
Statistics
Matches: 151, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
44 2 0.01
45 149 0.99
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Consensus pattern (44 bp):
CACTAAAAGATTGACTTCTCTTAAGAGAAAGTCAAGGAAGACAA
Found at i:7216619 original size:42 final size:42
Alignment explanation
Indices: 7216413--7217340 Score: 677
Period size: 42 Copynumber: 22.2 Consensus size: 42
7216403 GACAACACTA
* * * * * * *
7216413 AAAGATCGACTTCTCTTCGTGAGAAAGTCAAGGAAGACAACAATA
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAA-G-A-ATAACATTG
* * * * *
7216458 AAAGATTGACTCCTCTTCACGAGAAAGTCAAGGAAGACAACACTA
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAA-G-A-ATAACATTG
* * * * *
7216503 AAAGATTGACTCCTCTTAATGAGAAAGTCAAGGATGACAAAACTG
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAA-GA--ATAACATTG
* * * *
7216548 AAAGATTGACTTCTCTTAACGAGAAAGTCAAGAATAACATTG
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
* * * * * *
7216590 GAAGATTTACTCCCCTTTATGAGGGAGTCAAGAATAACATTA
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
* * * * * *
7216632 AAAGATAGAATTCTCTTCACGATGAAGTCAATAATAACATTG
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
* * *
7216674 AACGATTGACTCCTCTTCACGAGGGAGTCAAGAA-AGACAATACTG
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATA-AC-AT--TG
* ** * * *
7216719 AAAGATTTACTTTTGTTCATGAGAAAGTCAAGAATAACACTG
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
* *
7216761 AAAGATTGACTCCTCTTCATGAGAAAGTAAAGAAT-A-A-TG
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
** * * *
7216800 -AAGATTGACTTGTCTTCACGAGGAATTCAAGAATAATATTG
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
* *
7216841 AAAGATAT-ACTTCTCTTCACGAGGAAGTCAAGAATAACATT-
1 AAAGAT-TGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
* * *
7216882 AAATGATT-ACTCCTCTTCACT-AGGGAGTTAAGAA-AGACAATG
1 AAA-GATTGACTCCTCTTCA-TGAGGAAGTCAAGAATA-ACATTG
* * * * *
7216924 ACATATTGACTCCTCTTAATGAGGCAGTCAATAATAACATTG
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
*
7216966 AAAGATTGACTTCTCTTCATGAGGAAGTCAAGAATAACATTG
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
* * *
7217008 AAAGATTGACTCTTCTTCACGAGGGAGTCAAGAA-AGACAATACTG
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATA-AC-AT--TG
* ** * *
7217053 AAATATTGACTTATCTTCACGAGAAAGTCAAGAATAAC----
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
* * * * * *
7217091 AAAGATTGATTTCTCTTCACGAGGAATTCAAAAATAATATTG
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
* * * * *
7217133 AAATATTGATTCCTCTTCACGAGGGAGTCAAGAATAA-A--A
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
* *
7217172 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAACATTG
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
7217214 AAAGATTGACTCCTCTTCATGAGGGAA-TCAAGAATAAC----
1 AAAGATTGACTCCTCTTCATGA-GGAAGTCAAGAATAACATTG
* * **
7217252 AAAGATTTACTTCTCCCCATGAGGAAGTCAAGAATAA-A---
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
** *
7217290 AAAGACCGACTTCTCTTCATGAGGAAGTCAAGAATAACATTG
1 AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
7217332 AAAGATTGA
1 AAAGATTGA
7217341 AGTTTCTAGG
Statistics
Matches: 723, Mismatches: 123, Indels: 77
0.78 0.13 0.08
Matches are distributed among these distances:
37 4 0.01
38 119 0.16
39 37 0.05
40 4 0.01
41 39 0.05
42 333 0.46
43 10 0.01
44 4 0.01
45 171 0.24
46 2 0.00
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (42 bp):
AAAGATTGACTCCTCTTCATGAGGAAGTCAAGAATAACATTG
Found at i:7216973 original size:167 final size:164
Alignment explanation
Indices: 7216458--7217340 Score: 635
Period size: 167 Copynumber: 5.3 Consensus size: 164
7216448 GACAACAATA
* * * * * * * *
7216458 AAAGATTGACTCCTCTTCACGAGAAAGTCAAGGAAGACAACACTAAAAGATTGACTCCTCTTAAT
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAA-G-A-ATAA-ATTGAAAGATTGACTTCTCTTCAC
* * * * * *
7216523 GAGAAAGTCAAGGATGACAAAACTGAAA-GATTGACTTCTCTTAACGAGAAAGTCAAGAATAACA
62 GAGGAAGTCAA-GA--ATAACATTGAAATGATTGACTCCTCTTCACGAGAAAGTCAAGAATAACA
* * * * * * *
7216587 TTGGAAGATTTACTCCCCTTTATGAGGGAGTCAAGAATAACATTA
124 ----AAGATTGACTCCTCTTAACGAGGAAGTCAAAAATAACATTG
* * * * * *
7216632 AAAGATAGAATTCTCTTCACGATGAAGTCAATAATAACATTGAACGATTGACTCCTCTTCACGAG
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA-ATTGAAAGATTGACTTCTCTTCACGAG
* * ** * *
7216697 GGAGTCAAGAA-AGACAATACTGAAA-GATTTACTTTTGTTCATGAGAAAGTCAAGAATAACACT
65 GAAGTCAAGAATA-AC-AT--TGAAATGATTGACTCCTCTTCACGAGAAAGTCAAGAAT-A-AC-
* * *
7216760 GAAAGATTGACTCCTCTTCATGAGAAAGT-AAAGAAT-A-A-TG
123 -AAAGATTGACTCCTCTTAACGAGGAAGTCAAA-AATAACATTG
* *
7216800 -AAGATTGACTTGTCTTCACGAGGAATTCAAGAATAATATTGAAAGATAT-ACTTCTCTTCACGA
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA-ATTGAAAGAT-TGACTTCTCTTCACGA
* ** *
7216863 GGAAGTCAAGAATAACATT-AAATGATT-ACTCCTCTTCACTAGGGAGTTAAGAA-AGACAATGA
64 GGAAGTCAAGAATAACATTGAAATGATTGACTCCTCTTCACGAGAAAGTCAAGAATA-AC-A--A
* * * *
7216925 CATATTGACTCCTCTTAATGAGGCAGTCAATAATAACATTG
125 -AGATTGACTCCTCTTAACGAGGAAGTCAAAAATAACATTG
*
7216966 AAAGATTGACTTCTCTTCATGAGGAAGTCAAGAATAACATTGAAAGATTGAC-TCTTCTTCACGA
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA-ATTGAAAGATTGACTTC-TCTTCACGA
* **
7217030 GGGAGTCAAGAA-AGACAATACTGAAAT-ATTGACTTATCTTCACGAGAAAGTCAAGAATAACAA
64 GGAAGTCAAGAATA-AC-AT--TGAAATGATTGACTCCTCTTCACGAGAAAGTCAAGAATAACAA
* * * * *
7217093 AGATTGATTTCTCTTCACGAGGAATTCAAAAATAATATTG
125 AGATTGACTCCTCTTAACGAGGAAGTCAAAAATAACATTG
* * *
7217133 AAATATTGA-TTCCTCTTCACGAGGGAGTCAAGAATAAA--AAAAGATTGACTTCTCTTCACGAG
1 AAAGATTGACTT-CTCTTCACGAGGAAGTCAAGAATAAATTGAAAGATTGACTTCTCTTCACGAG
* *
7217195 GAAGTCAAGAATAACATTGAAA-GATTGACTCCTCTTCATGAGGGAA-TCAAGAATAACAAAGAT
65 GAAGTCAAGAATAACATTGAAATGATTGACTCCTCTTCACGA-GAAAGTCAAGAATAACAAAGAT
* * *** * *
7217258 TTACTTCTCCCCATGAGGAAGTCAAGAATAA-A---
129 TGACTCCTCTTAACGAGGAAGTCAAAAATAACATTG
** *
7217290 AAAGACCGACTTCTCTTCATGAGGAAGTCAAGAATAACATTGAAAGATTGA
1 AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAA-ATTGAAAGATTGA
7217341 AGTTTCTAGG
Statistics
Matches: 576, Mismatches: 95, Indels: 90
0.76 0.12 0.12
Matches are distributed among these distances:
157 29 0.05
158 3 0.01
160 11 0.02
161 64 0.11
162 4 0.01
163 48 0.08
164 40 0.07
165 4 0.01
166 11 0.02
167 195 0.34
168 8 0.01
169 2 0.00
170 10 0.02
171 115 0.20
172 3 0.01
173 2 0.00
174 26 0.05
175 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.18, T:0.26
Consensus pattern (164 bp):
AAAGATTGACTTCTCTTCACGAGGAAGTCAAGAATAAATTGAAAGATTGACTTCTCTTCACGAGG
AAGTCAAGAATAACATTGAAATGATTGACTCCTCTTCACGAGAAAGTCAAGAATAACAAAGATTG
ACTCCTCTTAACGAGGAAGTCAAAAATAACATTG
Found at i:7219223 original size:7 final size:7
Alignment explanation
Indices: 7219197--7219402 Score: 115
Period size: 7 Copynumber: 29.4 Consensus size: 7
7219187 TGTCTCATTG
7219197 TTTTCTT
1 TTTTCTT
*
7219204 TTTCCTCT
1 TTTTCT-T
7219212 TTTTCTT
1 TTTTCTT
7219219 TTTTCTT
1 TTTTCTT
7219226 TTTTCTT
1 TTTTCTT
7219233 TTTTC-T
1 TTTTCTT
7219239 TTTTCTT
1 TTTTCTT
7219246 CTTTT-TT
1 -TTTTCTT
7219253 TCTATT-TT
1 T-T-TTCTT
* *
7219261 TTATCTA
1 TTTTCTT
* *
7219268 TTATCTA
1 TTTTCTT
*
7219275 TTATCTT
1 TTTTCTT
*
7219282 TTCTCTT
1 TTTTCTT
*
7219289 TTTTCCT
1 TTTTCTT
*
7219296 TCTTCTT
1 TTTTCTT
7219303 TTTTCTAT
1 TTTTCT-T
*
7219311 CTTTTCTC
1 -TTTTCTT
7219319 TTTTC--
1 TTTTCTT
*
7219324 TTTTCTC
1 TTTTCTT
7219331 TTTTCTT
1 TTTTCTT
7219338 TTTT-TT
1 TTTTCTT
*
7219344 TTATC-T
1 TTTTCTT
*
7219350 TTTTC-A
1 TTTTCTT
*
7219356 TTTTCCT
1 TTTTCTT
7219363 TTTT-TT
1 TTTTCTT
*
7219369 TCTTCTTT
1 TTTTC-TT
*
7219377 TTTTCAATA
1 TTTTC--TT
*
7219386 TTTTCTC
1 TTTTCTT
7219393 TTTTCTT
1 TTTTCTT
7219400 TTT
1 TTT
7219403 ATCTCTAGAT
Statistics
Matches: 160, Mismatches: 24, Indels: 30
0.75 0.11 0.14
Matches are distributed among these distances:
5 5 0.03
6 27 0.17
7 94 0.59
8 22 0.14
9 12 0.08
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTCTT
Found at i:7219261 original size:11 final size:10
Alignment explanation
Indices: 7219217--7219381 Score: 75
Period size: 11 Copynumber: 15.7 Consensus size: 10
7219207 CCTCTTTTTC
7219217 TTTTTTCTTT
1 TTTTTTCTTT
7219227 TTTCTTT-TTT
1 TTT-TTTCTTT
*
7219237 CTTTTTCTTCT
1 TTTTTTCTT-T
7219248 TTTTTTCTATT
1 TTTTTTCT-TT
*
7219259 TTTTATCTATT
1 TTTTTTCT-TT
* * * *
7219270 ATCTATT-ATC
1 -TTTTTTCTTT
*
7219280 TTTTCTCTTT
1 TTTTTTCTTT
* *
7219290 TTTCCTTCTTC
1 TTT-TTTCTTT
*
7219301 TTTTTTCTATC
1 TTTTTTCT-TT
*
7219312 TTTTCTCTTT
1 TTTTTTCTTT
*
7219322 TCTTTTCTCTT
1 TTTTTTCT-TT
*
7219333 TTCTTT-TTT
1 TTTTTTCTTT
*
7219342 TTTTATCTTT
1 TTTTTTCTTT
*
7219352 TTCATTTTCCTT
1 TT--TTTTCTTT
7219364 TTTTTTCTTCT
1 TTTTTTCTT-T
7219375 TTTTTTC
1 TTTTTTC
7219382 AATATTTTCT
Statistics
Matches: 114, Mismatches: 28, Indels: 25
0.68 0.17 0.15
Matches are distributed among these distances:
9 12 0.11
10 38 0.33
11 52 0.46
12 12 0.11
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:7219397 original size:37 final size:37
Alignment explanation
Indices: 7219197--7219402 Score: 137
Period size: 36 Copynumber: 5.5 Consensus size: 37
7219187 TGTCTCATTG
*
7219197 TTTTCT-TTTTCCTCTTTTTCTT-TTTTCTTTTTTCT-T-
1 TTTTCTCTTTTCCT-TTTTT-TTCTTCT-TTTTTTCTATC
* *
7219233 TTTTCT-TTTTCTTCTTTTTTTCTAT-TTTTTATCTATTATC
1 TTTTCTCTTTTCCT-TTTTTTTCT-TCTTTTT-T-T-CTATC
* *
7219273 TATTATCTTTTCTCTTTTTTCCTTCTTC-TTTTTTCTATC
1 TTTTCTCTTTTC-CTTTTTT--TTCTTCTTTTTTTCTATC
*
7219312 TTTTCTCTTTTCTTTTCTCTTTTCTT-TTTTTTT-TATC
1 TTTTCTCTTTTCCTTT-T-TTTTCTTCTTTTTTTCTATC
* *
7219349 TTTT-TCATTTTCCTTTTTTTTCTTCTTTTTTTCAATA
1 TTTTCTC-TTTTCCTTTTTTTTCTTCTTTTTTTCTATC
7219386 TTTTCTCTTTT-CTTTTT
1 TTTTCTCTTTTCCTTTTT
7219403 ATCTCTAGAT
Statistics
Matches: 139, Mismatches: 12, Indels: 38
0.74 0.06 0.20
Matches are distributed among these distances:
35 13 0.09
36 37 0.27
37 28 0.20
38 17 0.12
39 16 0.12
40 7 0.05
41 11 0.08
42 6 0.04
43 4 0.03
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (37 bp):
TTTTCTCTTTTCCTTTTTTTTCTTCTTTTTTTCTATC
Found at i:7219416 original size:74 final size:75
Alignment explanation
Indices: 7219280--7219419 Score: 171
Period size: 74 Copynumber: 1.9 Consensus size: 75
7219270 ATCTATTATC
* * * * *
7219280 TTTTCTCTTTTTTCCTTCTTCTTTTTTCTATCTTTTCTCTTTTCTTTTCTCTTTTCTTTTTTTTT
1 TTTTCTCTTTTTT-CTTCTTCTTTTTTCAATATTTTCTCTTTTCTTTTCTCATCTCTATTTTTTT
7219345 TATCTTTTTCA
65 TATCTTTTTCA
7219356 TTTTC-CTTTTTT-TTCTTCTTTTTTTCAATATTTTCTCTTTTCTTTT-T-ATCTCTAGATTTTT
1 TTTTCTCTTTTTTCTTCTTC-TTTTTTCAATATTTTCTCTTTTCTTTTCTCATCTCT--ATTTTT
7219417 TTT
63 TTT
7219420 TATGAATTTA
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
72 4 0.07
73 7 0.12
74 33 0.59
75 7 0.12
76 5 0.09
ACGTcount: A:0.06, C:0.19, G:0.01, T:0.74
Consensus pattern (75 bp):
TTTTCTCTTTTTTCTTCTTCTTTTTTCAATATTTTCTCTTTTCTTTTCTCATCTCTATTTTTTTT
ATCTTTTTCA
Found at i:7219420 original size:24 final size:22
Alignment explanation
Indices: 7219363--7219420 Score: 53
Period size: 24 Copynumber: 2.4 Consensus size: 22
7219353 TCATTTTCCT
*
7219363 TTTTTTTCTTCTTTTTTTCAATA
1 TTTTTTT-TTCTTTTTTTCAAGA
*
7219386 TTTTCTCTTTTCTTTTTATCTCTAGA
1 TTTT-T-TTTTCTTTTT-T-TCAAGA
7219412 TTTTTTTTT
1 TTTTTTTTT
7219421 ATGAATTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
23 4 0.14
24 13 0.45
25 4 0.14
26 8 0.28
ACGTcount: A:0.10, C:0.14, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTTTTTTCTTTTTTTCAAGA
Found at i:7230206 original size:19 final size:20
Alignment explanation
Indices: 7230151--7230208 Score: 64
Period size: 20 Copynumber: 3.0 Consensus size: 20
7230141 TTGATATTTT
* * *
7230151 CCAATAGTTTCAAAACTATC
1 CCAAGAGTTTCGAAACTTTC
7230171 CCAAGAGTTTCGAAACTTTC
1 CCAAGAGTTTCGAAACTTTC
* *
7230191 CCAA-ATTTTTGAAACTTT
1 CCAAGAGTTTCGAAACTTT
7230209 GTGTGCAGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
19 12 0.36
20 21 0.64
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (20 bp):
CCAAGAGTTTCGAAACTTTC
Found at i:7243591 original size:18 final size:19
Alignment explanation
Indices: 7243565--7243621 Score: 91
Period size: 19 Copynumber: 3.1 Consensus size: 19
7243555 TAATTAGTGA
7243565 AACAAACTCTATTTAATAT
1 AACAAACTCTATTTAATAT
7243584 AA-AAACTCTATTTAATCA-
1 AACAAACTCTATTTAAT-AT
7243602 AACAAACTCTATTTAATAT
1 AACAAACTCTATTTAATAT
7243621 A
1 A
7243622 CAATTACGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
18 17 0.49
19 18 0.51
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (19 bp):
AACAAACTCTATTTAATAT
Found at i:7243610 original size:19 final size:18
Alignment explanation
Indices: 7243564--7243624 Score: 88
Period size: 18 Copynumber: 3.3 Consensus size: 18
7243554 TTAATTAGTG
7243564 AAACAAACTCTATTTAAT
1 AAACAAACTCTATTTAAT
7243582 ATAA-AAACTCTATTTAAT
1 A-AACAAACTCTATTTAAT
7243600 CAAACAAACTCTATTTAAT
1 -AAACAAACTCTATTTAAT
*
7243619 ATACAA
1 AAACAA
7243625 TTACGTGTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
18 22 0.56
19 17 0.44
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (18 bp):
AAACAAACTCTATTTAAT
Found at i:7249441 original size:15 final size:15
Alignment explanation
Indices: 7249421--7249452 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
7249411 CCCCCTTACT
7249421 TTAACACTTCTCCCC
1 TTAACACTTCTCCCC
7249436 TTAACACTTCTCCCC
1 TTAACACTTCTCCCC
7249451 TT
1 TT
7249453 TTTGTTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.44, G:0.00, T:0.38
Consensus pattern (15 bp):
TTAACACTTCTCCCC
Found at i:7251488 original size:19 final size:20
Alignment explanation
Indices: 7251457--7251494 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
7251447 GTGGAATGTG
*
7251457 ATGATGTTTAGCATGATTTA
1 ATGATGTTTAGCAGGATTTA
7251477 ATGATG-TTAGCAGGATTT
1 ATGATGTTTAGCAGGATTT
7251495 GGAGAAGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.29, C:0.05, G:0.24, T:0.42
Consensus pattern (20 bp):
ATGATGTTTAGCAGGATTTA
Found at i:7251763 original size:45 final size:44
Alignment explanation
Indices: 7251673--7251770 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 44
7251663 GGCAGTGTTC
* * *
7251673 ATCGATGCACATTCAAGGAGTGCATCGGTGCATCTTGATGATGT
1 ATCGATGCACATTCAAGGAGTGCATCGATGCACCTTAATGATGT
7251717 ATCGATGCACATTCAAATGGA-TGCATCGATGCACCTTAAT-AGTGT
1 ATCGATGCACATTC-AA-GGAGTGCATCGATGCACCTTAATGA-TGT
*
7251762 ATCAATGCA
1 ATCGATGCA
7251771 TTATGCACAA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
44 15 0.32
45 29 0.62
46 3 0.06
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (44 bp):
ATCGATGCACATTCAAGGAGTGCATCGATGCACCTTAATGATGT
Found at i:7255616 original size:22 final size:21
Alignment explanation
Indices: 7255574--7255613 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7255564 GAGATTATTT
*
7255574 TCATTTTTCAATTTTGAAATA
1 TCATTTTTCAATTTTAAAATA
7255595 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
7255614 ATAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAATA
Found at i:7255906 original size:27 final size:27
Alignment explanation
Indices: 7255868--7255923 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
7255858 TGCCGGCTTT
7255868 TTGCATTCGTAGAAAATGATCAGGTCC
1 TTGCATTCGTAGAAAATGATCAGGTCC
7255895 TTGCATTCGTAGAAAATGATCAGGTCC
1 TTGCATTCGTAGAAAATGATCAGGTCC
7255922 TT
1 TT
7255924 CTCTTTTGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (27 bp):
TTGCATTCGTAGAAAATGATCAGGTCC
Found at i:7257626 original size:65 final size:63
Alignment explanation
Indices: 7257554--7257740 Score: 186
Period size: 64 Copynumber: 2.9 Consensus size: 63
7257544 ACACTGATAA
7257554 TGCATCGATGCATAAATATGC-TTCGATGTTTTGAAAAAAACATGG-GTGCATCGATGCATGGCT
1 TGCATCGATGCATAAA-AT-CATTCGATGTTTT--AAAAAACATGGAGTGCATCGATGCATGG-T
7257617 -TG
61 ATG
* * *
7257619 TGCATCGATGCATAAAATCAATTCGATGTTTTAATATATATGGAGTGCATCGATGCATGGTATG
1 TGCATCGATGCATAAAATC-ATTCGATGTTTTAAAAAACATGGAGTGCATCGATGCATGGTATG
* * * * *
7257683 TGCATCGGTACACAAAAGTCATTCGATG-TTCAATTAAAACAAGG-GTGCATCGATGCAT
1 TGCATCGATGCATAAAA-TCATTCGATGTTTTAA--AAAACATGGAGTGCATCGATGCAT
7257741 TGATTCATGC
Statistics
Matches: 104, Mismatches: 11, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
63 14 0.13
64 56 0.54
65 34 0.33
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (63 bp):
TGCATCGATGCATAAAATCATTCGATGTTTTAAAAAACATGGAGTGCATCGATGCATGGTATG
Found at i:7258951 original size:17 final size:17
Alignment explanation
Indices: 7258925--7258964 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
7258915 ATATTCAAAC
*
7258925 TTTAAAAGATAATATCT
1 TTTAATAGATAATATCT
7258942 TTTAATAGATAATATCT
1 TTTAATAGATAATATCT
7258959 TTTAAT
1 TTTAAT
7258965 TTGGAATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (17 bp):
TTTAATAGATAATATCT
Found at i:7259047 original size:82 final size:81
Alignment explanation
Indices: 7258952--7259119 Score: 241
Period size: 82 Copynumber: 2.1 Consensus size: 81
7258942 TTTAATAGAT
* ** *
7258952 AATATCTTTTAATTTGGAATATTTAAAAATATATTGATATCTTTTTAATATA-TTTTTAATAATT
1 AATATCATTTAATTTAAAATATTTAAAAATATATTGATATCCTTTTAATA-ACTTTTTAAT-ATT
*
7259016 AAATTTAAAAAGATAA-TA
64 AAATTCAAAAAGA-AAGTA
*
7259034 AATATCATTTAATTTAAAATATTTAAAATTATATTGATATCCTTTTAATAACTTTTTAATATTAA
1 AATATCATTTAATTTAAAATATTTAAAAATATATTGATATCCTTTTAATAACTTTTTAATATTAA
7259099 ATTCAAAAAGAAAGTA
66 ATTCAAAAAGAAAGTA
7259115 AATAT
1 AATAT
7259120 ATATTACCTT
Statistics
Matches: 78, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
80 2 0.03
81 23 0.29
82 53 0.68
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.45
Consensus pattern (81 bp):
AATATCATTTAATTTAAAATATTTAAAAATATATTGATATCCTTTTAATAACTTTTTAATATTAA
ATTCAAAAAGAAAGTA
Found at i:7259137 original size:81 final size:82
Alignment explanation
Indices: 7258969--7259142 Score: 230
Period size: 81 Copynumber: 2.1 Consensus size: 82
7258959 TTTAATTTGG
* *
7258969 AATATTTAAAAATATATTGATATCTTTTTAATATATTTTTAATAATTAAATTTAAAAAGATAATA
1 AATATTTAAAAATATATTGATATCCTTTTAATATATTTTTAATAATTAAATTCAAAAAGATAATA
*
7259034 AATATCATTTAATTTAA
66 AATATCATTTAACTTAA
*
7259051 AATATTTAAAATTATATTGATATCCTTTTAATA-ACTTTTTAAT-ATTAAATTCAAAAAGA-AAG
1 AATATTTAAAAATATATTGATATCCTTTTAATATA-TTTTTAATAATTAAATTCAAAAAGATAA-
* *
7259113 TAAATAT-ATATTACCTTGA
64 TAAATATCAT-TTAACTTAA
*
7259132 GATATTTAAAA
1 AATATTTAAAA
7259143 GGATATAACT
Statistics
Matches: 82, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
80 4 0.05
81 39 0.48
82 39 0.48
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.44
Consensus pattern (82 bp):
AATATTTAAAAATATATTGATATCCTTTTAATATATTTTTAATAATTAAATTCAAAAAGATAATA
AATATCATTTAACTTAA
Found at i:7259156 original size:81 final size:82
Alignment explanation
Indices: 7258969--7259165 Score: 206
Period size: 81 Copynumber: 2.4 Consensus size: 82
7258959 TTTAATTTGG
** * * *
7258969 AATATTTAAAAATATATTGATATCTTTTTAATATATTTTTAATAATTAAATTTAAAAAGATAATA
1 AATATTTAAAAGGATATTAATATCCTTTTAATATATTTTTAATAATTAAATTCAAAAAGATAATA
*
7259034 AATATCATTTAATTTAA
66 AATATCATTTAACTTAA
** *
7259051 AATATTTAAAATTATATTGATATCCTTTTAATA-ACTTTTTAAT-ATTAAATTCAAAAAGA-AAG
1 AATATTTAAAAGGATATTAATATCCTTTTAATATA-TTTTTAATAATTAAATTCAAAAAGATAA-
* *
7259113 TAAATAT-ATATTACCTTGA
64 TAAATATCAT-TTAACTTAA
* *
7259132 GATATTTAAAAGGATA-TAACTATCCTATTAATAT
1 AATATTTAAAAGGATATTAA-TATCCTTTTAATAT
7259166 TCAAATGTAA
Statistics
Matches: 99, Mismatches: 11, Indels: 10
0.82 0.09 0.08
Matches are distributed among these distances:
80 6 0.06
81 54 0.55
82 39 0.39
ACGTcount: A:0.47, C:0.06, G:0.05, T:0.43
Consensus pattern (82 bp):
AATATTTAAAAGGATATTAATATCCTTTTAATATATTTTTAATAATTAAATTCAAAAAGATAATA
AATATCATTTAACTTAA
Found at i:7266850 original size:22 final size:22
Alignment explanation
Indices: 7266825--7266868 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
7266815 AATCTAAATT
7266825 ATACCAATTTTAATAACTGACA
1 ATACCAATTTTAATAACTGACA
7266847 ATACCAATTTTAATAACTGACA
1 ATACCAATTTTAATAACTGACA
7266869 CATCAACACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.18, G:0.05, T:0.32
Consensus pattern (22 bp):
ATACCAATTTTAATAACTGACA
Found at i:7272148 original size:22 final size:22
Alignment explanation
Indices: 7272107--7272148 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7272097 ATATATATGA
*
7272107 TAAAATTTTAGAGTGAACACGG
1 TAAAATTTCAGAGTGAACACGG
* *
7272129 TAAAATTTCAGGGTGGACAC
1 TAAAATTTCAGAGTGAACAC
7272149 ACACATATAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.26
Consensus pattern (22 bp):
TAAAATTTCAGAGTGAACACGG
Found at i:7278609 original size:17 final size:17
Alignment explanation
Indices: 7278587--7278628 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
7278577 TGGGTTATTC
7278587 AAAACCAAAATCATATA
1 AAAACCAAAATCATATA
7278604 AAAACCAAAATCATATA
1 AAAACCAAAATCATATA
7278621 AAAACCAA
1 AAAACCAA
7278629 TTAGTAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.67, C:0.19, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAACCAAAATCATATA
Found at i:7286955 original size:106 final size:106
Alignment explanation
Indices: 7286769--7287679 Score: 1545
Period size: 106 Copynumber: 8.6 Consensus size: 106
7286759 AAAAGTTGTC
7286769 TGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
1 TGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
7286834 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
66 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
*
7286875 TGTCAACAAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
1 TGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
*
7286940 AGACAACGCATGTTCAACTTCACGACGAAGGGACCGCTGGT
66 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
* * *
7286981 TGTCAACAAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAAGATATTGGACTCC
1 TGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* *
7287046 AGACAACGTAAGTTCAACTTCACGACGAAGGGACCGCGGGT
66 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
* * *
7287087 TGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCG
1 TGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
7287152 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
66 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
* *
7287193 TGTCAACAAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCC
1 TGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
* *
7287258 AGACAACGTAAGTTCAACTTCACGATGAAGGGACCGCTGGT
66 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
* * *
7287299 TGTCAACAAACAACTTCTCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCG
1 TGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
7287364 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
66 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
* *
7287405 TGTCAACAAACAATTTCCCAATTTCGGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCG
1 TGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
7287470 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
66 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
* * **
7287511 TGTCAACAAACAACTTCCCAATTTCATAGCCAATTTCAACTTCACGGCGAAGGATATTGGACTCC
1 TGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
*
7287576 AGACAACGCAAGTTCAACTTCACAACGAAGGGA-CGACTGGT
66 AGACAACGCAAGTTCAACTTCACGACGAAGGGACCG-CTGGT
* * * * *
7287617 TGTCAACAAACAATTTCCCAGTTCCAAAGCCAATTTCAACTTCACGACGGAGGATATTGGACT
1 TGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACT
7287680 TGGAACAATA
Statistics
Matches: 759, Mismatches: 45, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
105 2 0.00
106 757 1.00
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (106 bp):
TGTCAACAAACAATTTCCCAATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGGACTCC
AGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGT
Found at i:7297950 original size:23 final size:23
Alignment explanation
Indices: 7297891--7297968 Score: 86
Period size: 23 Copynumber: 3.4 Consensus size: 23
7297881 ATACACATAT
* *
7297891 TATACATACAT-ATATATGCATG
1 TATACATATATCATATATACATG
* *
7297913 TAATGCTTATATCATATATACATG
1 T-ATACATATATCATATATACATG
*
7297937 TATACATATATCATACATACATG
1 TATACATATATCATATATACATG
*
7297960 TTTACATAT
1 TATACATAT
7297969 CATCCATCCA
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
22 1 0.02
23 34 0.74
24 11 0.24
ACGTcount: A:0.40, C:0.14, G:0.06, T:0.40
Consensus pattern (23 bp):
TATACATATATCATATATACATG
Found at i:7298051 original size:16 final size:16
Alignment explanation
Indices: 7298030--7298075 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
7298020 ATATCTATAT
*
7298030 ATGTATGTATGTATGC
1 ATGTATATATGTATGC
*
7298046 ATGTATAT-TTTGATGC
1 ATGTATATATGT-ATGC
7298062 ATGTATATATGTAT
1 ATGTATATATGTAT
7298076 AATAATGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 2 0.08
16 21 0.84
17 2 0.08
ACGTcount: A:0.28, C:0.04, G:0.20, T:0.48
Consensus pattern (16 bp):
ATGTATATATGTATGC
Found at i:7298163 original size:16 final size:16
Alignment explanation
Indices: 7298139--7298177 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
7298129 TATGAGAGAC
*
7298139 ATATATACATGTCTAT
1 ATATATACATGTATAT
*
7298155 ATGTATACATGTATAT
1 ATATATACATGTATAT
7298171 ATATATA
1 ATATATA
7298178 TATGCATGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.44
Consensus pattern (16 bp):
ATATATACATGTATAT
Found at i:7298255 original size:4 final size:4
Alignment explanation
Indices: 7298239--7298300 Score: 56
Period size: 4 Copynumber: 15.5 Consensus size: 4
7298229 TGTGTTCTAT
* * * *
7298239 ATAC ATCC ATAC ATAC A-ATC ATAC ATAC ATCC ATAC ATTAT ATAT ATAC
1 ATAC ATAC ATAC ATAC ATA-C ATAC ATAC ATAC ATAC A-TAC ATAC ATAC
7298288 ATAC ATA- ATAC AT
1 ATAC ATAC ATAC AT
7298301 GTTCTACATG
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
3 4 0.08
4 40 0.83
5 4 0.08
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.31
Consensus pattern (4 bp):
ATAC
Found at i:7298359 original size:31 final size:30
Alignment explanation
Indices: 7298281--7298359 Score: 76
Period size: 28 Copynumber: 2.7 Consensus size: 30
7298271 ATACATTATA
* *
7298281 TATATACATACATA-ATACATGTTCTACATG
1 TATATACAT-CATACATGCATATTCTACATG
*
7298311 CATCATACA-C--ACATGCATATTCTACATAG
1 TAT-ATACATCATACATGCATATTCTACAT-G
7298340 TATATACATCATACATGCAT
1 TATATACATCATACATGCAT
7298360 CACATATATA
Statistics
Matches: 39, Mismatches: 4, Indels: 11
0.72 0.07 0.20
Matches are distributed among these distances:
27 1 0.03
28 18 0.46
29 5 0.13
30 2 0.05
31 13 0.33
ACGTcount: A:0.39, C:0.22, G:0.06, T:0.33
Consensus pattern (30 bp):
TATATACATCATACATGCATATTCTACATG
Found at i:7298974 original size:286 final size:285
Alignment explanation
Indices: 7298420--7299172 Score: 848
Period size: 286 Copynumber: 2.6 Consensus size: 285
7298410 ACTAAAAGGG
* * * * *
7298420 TAAACTTTT-TTCGCCAA-TTTTTAAATGAATCCAATTTAGT-CTAATTTAATATTAATTTCAAC
1 TAAACTTTTGTTCACAAACTTTTTAAATGAATACAATTTAGTAC-ATTTTTATATTAATTTCAAC
* * * * *
7298482 TTTATATTTTACAAATGTTTCAATTTGA-CC--ACGTGTTGTTTAATTAATTTAAATTCTAGTTT
65 TTCATATTTTACAATTGTTTCAATTTGATCCTTATGTGTTGTTTAATTTATTTAATTTC-AGTTT
* * * * * * * *
7298544 ATAATTTCATATTTATTCAATTTAGTCTTTAAAATTATCTTTTAATTCGAAATTGGCTCATACTT
129 GTAATTTCATGTTTGTTCAATTTAGTCCTTAAAATTATATTTTTATTCAAAACTGGCTCATACTT
* * * * * *
7298609 ATTTATATTTTTGTATTTGCTTCAAACCATTTAAATCATATCATAAACTTCATTTCAAACCCTAT
194 ATTTATATTTTTGTATTTACTCCAAACCATATAAACCACATCATAAACTTCATGTCAAACCCTAT
* *
7298674 AAATTATATCATAATCTCTTC-AACCTTA
259 AAATTATATCATAAT-T-TCCAAACCCTA
* *
7298702 TAAATTTTTGTTCACAAAGTTTTTAAATGAATACAATTTAGTACATTTTTATATTAATTTCAACT
1 TAAACTTTTGTTCACAAACTTTTTAAATGAATACAATTTAGTACATTTTTATATTAATTTCAACT
* *
7298767 TCATATTTTACAATTGTTTCAATTTGATCCTTGTGTGTTGTTTAATTTATTTAATTTCAATTTGT
66 TCATATTTTACAATTGTTTCAATTTGATCCTTATGTGTTGTTTAATTTATTTAATTTCAGTTTGT
* *
7298832 AATTTCATGTTTGTTCAAATTAGTCCTTAACATTATATTTTTATTCAAAACTGGCTCATACTTAT
131 AATTTCATGTTTGTTCAATTTAGTCCTTAAAATTATATTTTTATTCAAAACTGGCTCATACTTAT
* * *
7298897 TTATA-TTTTGTAATTTACTCCAAACCCTATAAACCACATTATAAACTTCATGTCAAACTCTATA
196 TTATATTTTTGT-ATTTACTCCAAACCATATAAACCACATCATAAACTTCATGTCAAACCCTATA
7298961 AATTATATCATAATTTCCAAACCCTA
260 AATTATATCATAATTTCCAAACCCTA
* * *
7298987 TAAACTTTTGTTCACCAACTTTTTAAATGGATGA-AATTTAGTTA-ATTTTTATCTTAAATTT-A
1 TAAACTTTTGTTCACAAACTTTTTAAATGAAT-ACAATTTAG-TACATTTTTATATT-AATTTCA
* * * * * * *
7299049 GCTTCACATTTTATAATTATTTCGATTTGATCCCTTATATATCCTTGTTGTTTAATTTATATAAA
63 ACTTCATATTTTACAATTGTTTCAATTTGAT-CC---T-TAT--GTGTTGTTTAATTTAT-TTAA
* *
7299114 TTTTAGTTTGTAATTTCATGTTTGTTCAATTTAGTCCTTAAAATTGTA-TTTTA-TCAAAA
120 TTTCAGTTTGTAATTTCATGTTTGTTCAATTTAGTCCTTAAAATTATATTTTTATTCAAAA
7299173 TTGACCCATT
Statistics
Matches: 400, Mismatches: 52, Indels: 29
0.83 0.11 0.06
Matches are distributed among these distances:
282 8 0.02
283 6 0.01
284 68 0.17
285 88 0.22
286 133 0.33
287 22 0.05
289 1 0.00
290 2 0.00
291 6 0.01
292 20 0.05
293 46 0.12
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.47
Consensus pattern (285 bp):
TAAACTTTTGTTCACAAACTTTTTAAATGAATACAATTTAGTACATTTTTATATTAATTTCAACT
TCATATTTTACAATTGTTTCAATTTGATCCTTATGTGTTGTTTAATTTATTTAATTTCAGTTTGT
AATTTCATGTTTGTTCAATTTAGTCCTTAAAATTATATTTTTATTCAAAACTGGCTCATACTTAT
TTATATTTTTGTATTTACTCCAAACCATATAAACCACATCATAAACTTCATGTCAAACCCTATAA
ATTATATCATAATTTCCAAACCCTA
Found at i:7318047 original size:26 final size:24
Alignment explanation
Indices: 7318018--7318069 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
7318008 ACATAATAAA
7318018 TAGTAGAGTGATCATTTTATAACTTT
1 TAGTAGAGTG-T-ATTTTATAACTTT
*
7318044 TAGTTGAGTGTATTTTATAACTTT
1 TAGTAGAGTGTATTTTATAACTTT
7318068 TA
1 TA
7318070 ATAGTCGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 15 0.60
25 1 0.04
26 9 0.36
ACGTcount: A:0.29, C:0.06, G:0.15, T:0.50
Consensus pattern (24 bp):
TAGTAGAGTGTATTTTATAACTTT
Found at i:7318230 original size:21 final size:21
Alignment explanation
Indices: 7318193--7318236 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7318183 ATTTTACTCT
* *
7318193 TATTTTTAAAAGTTTTAATAA
1 TATTTTTAAAAGCTTTAAAAA
7318214 TATTTTTAAATA-CTTTAAAAA
1 TATTTTTAAA-AGCTTTAAAAA
7318235 TA
1 TA
7318237 ATTTAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (21 bp):
TATTTTTAAAAGCTTTAAAAA
Found at i:7319511 original size:4 final size:4
Alignment explanation
Indices: 7319502--7319527 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
7319492 GATTTCAATG
7319502 TTGT TTGT TTGT TTGT TTGT TTGT TT
1 TTGT TTGT TTGT TTGT TTGT TTGT TT
7319528 CTAATTGGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77
Consensus pattern (4 bp):
TTGT
Found at i:7321406 original size:18 final size:18
Alignment explanation
Indices: 7321383--7321425 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
7321373 CCCATTGTAT
7321383 GTGCATTGAGAGTCGTAG
1 GTGCATTGAGAGTCGTAG
7321401 GTGCATTGAGAGTCGTAG
1 GTGCATTGAGAGTCGTAG
7321419 GTGCATT
1 GTGCATT
7321426 TCGACATAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.21, C:0.12, G:0.37, T:0.30
Consensus pattern (18 bp):
GTGCATTGAGAGTCGTAG
Done.