Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007999.1 Hibiscus syriacus cultivar Beakdansim tig00110450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11700749
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 3 of 50
Found at i:461059 original size:112 final size:113
Alignment explanation
Indices: 460929--461507 Score: 969
Period size: 112 Copynumber: 5.2 Consensus size: 113
460919 ATCTAAAGAA
460929 AGAAGAATTTGTTCAACCTTTTACCTGAATTCATCACTTGATGGATTATTTTTGCCAGAGAAGGT
1 AGAAGAATTTGTTCAACCTTTTACCTGAATTCATCACTTGATGGATTATTTTTGCCAGAGAAGGT
460994 TCATAATGAGAAGAACTCATCTGAAGAAGGAAG-AGAAATTCATAATG
66 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATG
461041 AGAAGAATTTGTTCAACCTTTTACCTGAATTCATCACTTGATGGATTA-TTTTGCCAGAGAAGGT
1 AGAAGAATTTGTTCAACCTTTTACCTGAATTCATCACTTGATGGATTATTTTTGCCAGAGAAGGT
461105 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATG
66 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATG
461153 AGAAGAATTTGTTCAACCTTTTACCTGAATTCATCACTTGATGGA-T-TTTTTGCCAGAGAAGGT
1 AGAAGAATTTGTTCAACCTTTTACCTGAATTCATCACTTGATGGATTATTTTTGCCAGAGAAGGT
*
461216 TCAT-ATGAGAAGAACTCATCTAAAGAAGGAAGAAGAAATTCATAATG
66 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATG
* *
461263 AGAAGAATTTGTTCAACCTTTTATCTGAATTCATCACTTGATGGATTATTTTTGCCAGAGAAAGT
1 AGAAGAATTTGTTCAACCTTTTACCTGAATTCATCACTTGATGGATTATTTTTGCCAGAGAAGGT
* * *
461328 TCATAATGAGAAAAACTCATCTGAAGAAGGAATAAGAAGTTCATAATG
66 TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATG
** *
461376 AGAAGAATTTGTTCAACCTTTTGTCTGAATTCATCAATTGATGGATTATCTTTT-CCAGAGAA-G
1 AGAAGAATTTGTTCAACCTTTTACCTGAATTCATCACTTGATGGATTAT-TTTTGCCAGAGAAGG
* * *
461439 TTCATAATGAGAAG-ACTCATCTGAAGAAGAAAGAAGAAGTTCATAATA
65 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATG
*
461487 AGAAGAACTTGTTCAA-CTTTT
1 AGAAGAATTTGTTCAACCTTTT
461508 GCATAATTCT
Statistics
Matches: 447, Mismatches: 14, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
110 91 0.20
111 117 0.26
112 141 0.32
113 94 0.21
114 4 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (113 bp):
AGAAGAATTTGTTCAACCTTTTACCTGAATTCATCACTTGATGGATTATTTTTGCCAGAGAAGGT
TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAATTCATAATG
Found at i:461821 original size:3 final size:3
Alignment explanation
Indices: 461813--461875 Score: 101
Period size: 3 Copynumber: 20.7 Consensus size: 3
461803 CATATTTTTA
461813 TAT TAT TAT TAT ATAT TAT TAT TAT T-T TAT TAT TAT TAT TAT TATT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
461859 TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA
461876 AATACATATA
Statistics
Matches: 57, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.04
3 49 0.86
4 6 0.11
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:461839 original size:30 final size:32
Alignment explanation
Indices: 461805--461875 Score: 103
Period size: 33 Copynumber: 2.3 Consensus size: 32
461795 TTTTTATCCA
461805 TATTT-TTA-TATTATTATTATATATTATTAT
1 TATTTATTATTATTATTATTATATATTATTAT
*
461835 TATTTTATTATTATTATTATTATTTATTATTAT
1 TA-TTTATTATTATTATTATTATATATTATTAT
461868 TA-TTATTA
1 TATTTATTA
461876 AATACATATA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
30 2 0.05
31 9 0.24
32 3 0.08
33 23 0.62
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (32 bp):
TATTTATTATTATTATTATTATATATTATTAT
Found at i:466755 original size:2 final size:2
Alignment explanation
Indices: 466748--466802 Score: 110
Period size: 2 Copynumber: 27.5 Consensus size: 2
466738 TTTAAAATTT
466748 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
466790 TA TA TA TA TA TA T
1 TA TA TA TA TA TA T
466803 TTAAAAGAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:478145 original size:88 final size:88
Alignment explanation
Indices: 478024--478186 Score: 238
Period size: 88 Copynumber: 1.9 Consensus size: 88
478014 ATAAACACAT
* * * ** *
478024 AAGTTGAGGTAGGTATCATGGTGCGGCTGAGGGGCTACATCTCGGAGCTTACACA-CCTCTCTAG
1 AAGTTGAGGTAGGCATCATGGTGCGACTAAGGGGCTACATCTCAAAGCTCACACACCCT-TCTAG
478088 CCTACCTATACTACTATGCAACAC
65 CCTACCTATACTACTATGCAACAC
* *
478112 AAGTTGAGGTAGGCATCATGGTGCTACTAAGGGGCTACATCTCAAAGCTCACATACCCTTCTAGC
1 AAGTTGAGGTAGGCATCATGGTGCGACTAAGGGGCTACATCTCAAAGCTCACACACCCTTCTAGC
478177 CTACCTATAC
66 CTACCTATAC
478187 ATGTGTGTAA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
88 63 0.95
89 3 0.05
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (88 bp):
AAGTTGAGGTAGGCATCATGGTGCGACTAAGGGGCTACATCTCAAAGCTCACACACCCTTCTAGC
CTACCTATACTACTATGCAACAC
Found at i:480056 original size:23 final size:25
Alignment explanation
Indices: 480016--480072 Score: 84
Period size: 23 Copynumber: 2.4 Consensus size: 25
480006 CATAAAATAA
*
480016 AATAAAAATAAAATGTAAATAAAT-
1 AATAATAATAAAATGTAAATAAATG
480040 AATAATAATAAAA-GTAAATAAATG
1 AATAATAATAAAATGTAAATAAATG
480064 AA-AATAATA
1 AATAATAATA
480073 TATATATACA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
23 17 0.55
24 14 0.45
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (25 bp):
AATAATAATAAAATGTAAATAAATG
Found at i:480486 original size:14 final size:14
Alignment explanation
Indices: 480438--480494 Score: 57
Period size: 14 Copynumber: 4.1 Consensus size: 14
480428 GATTTATTTC
480438 CCTCTCTTC-CTCTT
1 CCTCT-TTCTCTCTT
* *
480452 CCTATTCCTCTCTT
1 CCTCTTTCTCTCTT
480466 CCTCTTTCTCTCTTT
1 CCTCTTTCTCTC-TT
480481 CC-CTTTCTCT-TT
1 CCTCTTTCTCTCTT
480493 CC
1 CC
480495 CTCTCTTCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
12 4 0.11
13 2 0.05
14 27 0.73
15 4 0.11
ACGTcount: A:0.02, C:0.46, G:0.00, T:0.53
Consensus pattern (14 bp):
CCTCTTTCTCTCTT
Found at i:481312 original size:20 final size:20
Alignment explanation
Indices: 481284--481322 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
481274 ATTTTAATTA
481284 ATTTATTAAT-TTAAGAAAAC
1 ATTTATTAATATTAA-AAAAC
*
481304 ATTTTTTAATATTAAAAAA
1 ATTTATTAATATTAAAAAA
481323 TGTCACGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (20 bp):
ATTTATTAATATTAAAAAAC
Found at i:483989 original size:22 final size:21
Alignment explanation
Indices: 483934--483997 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 21
483924 TGAGATACAA
* *
483934 CATCAACACCATCACCATTTCAT
1 CATCAACACCATAAACA--TCAT
483957 CATCAACACCA-ACAACATCAT
1 CATCAACACCATA-AACATCAT
*
483978 CCATCAAGACCATAAACATC
1 -CATCAACACCATAAACATC
483998 TTCTTAATTC
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
21 4 0.11
22 16 0.46
23 15 0.43
ACGTcount: A:0.42, C:0.38, G:0.02, T:0.19
Consensus pattern (21 bp):
CATCAACACCATAAACATCAT
Found at i:489242 original size:97 final size:100
Alignment explanation
Indices: 489087--489328 Score: 359
Period size: 99 Copynumber: 2.5 Consensus size: 100
489077 TCCATGATGT
* *
489087 CGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAA--TATCATTGTATAGATATTATAGTCA
1 CGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCT-TTATTGTATAGATATTATAATCA
*
489150 CC-TTATCAGGC-TAGCTGAATATTATCCATAAAGC
65 CCTTTATCAGGCTTAGCTGAATATAATCCATAAAGC
*
489184 CGGGGCGTTTAACCAATTGCTTTAGAGGGACAACTCAAGCTTTATTGTATA-ATATTATAATCAC
1 CGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATAGATATTATAATCAC
* *
489248 CTTTATCAGGCTTAGCTGAATCTAATCCATAAAGT
66 CTTTATCAGGCTTAGCTGAATATAATCCATAAAGC
* * *
489283 TGGGGCGTTTAACCAATTGCTCTAGATGGACATCTCAAGCTTTATT
1 CGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATT
489329 ATAGCCTGGG
Statistics
Matches: 131, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
97 50 0.38
98 18 0.14
99 63 0.48
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (100 bp):
CGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATAGATATTATAATCAC
CTTTATCAGGCTTAGCTGAATATAATCCATAAAGC
Found at i:493216 original size:18 final size:19
Alignment explanation
Indices: 493204--493255 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
493194 TAAAAGAAAT
493204 AAAAAGAAGAAAAACAATA
1 AAAAAGAAGAAAAACAATA
* * *
493223 AATAAAAAAGAAAAAATAATG
1 AA-AAAGAAG-AAAAACAATA
493244 AAAAAGAA-AAAA
1 AAAAAGAAGAAAA
493256 TAATGAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
18 4 0.15
19 2 0.07
20 11 0.41
21 10 0.37
ACGTcount: A:0.81, C:0.02, G:0.10, T:0.08
Consensus pattern (19 bp):
AAAAAGAAGAAAAACAATA
Found at i:493249 original size:17 final size:17
Alignment explanation
Indices: 493227--493264 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
493217 ACAATAAATA
493227 AAAAAGAAAAAATAATG
1 AAAAAGAAAAAATAATG
493244 AAAAAGAAAAAATAATG
1 AAAAAGAAAAAATAATG
493261 AAAA
1 AAAA
493265 TAAATAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (17 bp):
AAAAAGAAAAAATAATG
Found at i:493591 original size:43 final size:43
Alignment explanation
Indices: 493540--493667 Score: 145
Period size: 43 Copynumber: 3.0 Consensus size: 43
493530 GTGGCACTCG
* * *
493540 TGTA-AAAAAACTCCGCTATAGAACTTGACCTGTTG-TGGCGTT
1 TGTATAAAAAACACCGCTATAGAACTTGACATGTTGCT-GCATT
*
493582 TGTATAAAAAACACCGCTATAGAACCTGACATGTTGCTGCATT
1 TGTATAAAAAACACCGCTATAGAACTTGACATGTTGCTGCATT
* * * * *
493625 TGTAT-AAAAACGCCGTTATAAAACTTGACTTGTTGCGGCATT
1 TGTATAAAAAACACCGCTATAGAACTTGACATGTTGCTGCATT
493667 T
1 T
493668 TGTGAAAGAA
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
42 36 0.49
43 37 0.50
44 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (43 bp):
TGTATAAAAAACACCGCTATAGAACTTGACATGTTGCTGCATT
Found at i:493670 original size:43 final size:42
Alignment explanation
Indices: 493540--493667 Score: 148
Period size: 42 Copynumber: 3.0 Consensus size: 42
493530 GTGGCACTCG
* * * * *
493540 TGTAAAAAAACTCCGCTATAGAACTTGACCTGTTGTGGCGTT
1 TGTATAAAAACACCGCTATAGAACTTGACATGTTGCGGCATT
* *
493582 TGTATAAAAAACACCGCTATAGAACCTGACATGTTGCTGCATT
1 TGTAT-AAAAACACCGCTATAGAACTTGACATGTTGCGGCATT
* * * *
493625 TGTATAAAAACGCCGTTATAAAACTTGACTTGTTGCGGCATT
1 TGTATAAAAACACCGCTATAGAACTTGACATGTTGCGGCATT
493667 T
1 T
493668 TGTGAAAGAA
Statistics
Matches: 72, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
42 36 0.50
43 36 0.50
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (42 bp):
TGTATAAAAACACCGCTATAGAACTTGACATGTTGCGGCATT
Found at i:493848 original size:34 final size:34
Alignment explanation
Indices: 493804--493870 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
493794 AATGTGAAAC
*
493804 AATTAGGTTAGAATAGAAGCAGAAAAGATGAGAA
1 AATTAAGTTAGAATAGAAGCAGAAAAGATGAGAA
* *
493838 AATTAAGTTAGAGTAGAAGCAGAAAATATGAGA
1 AATTAAGTTAGAATAGAAGCAGAAAAGATGAGA
493871 CATTCTTTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.52, C:0.03, G:0.25, T:0.19
Consensus pattern (34 bp):
AATTAAGTTAGAATAGAAGCAGAAAAGATGAGAA
Found at i:496813 original size:41 final size:40
Alignment explanation
Indices: 496741--497184 Score: 166
Period size: 41 Copynumber: 10.9 Consensus size: 40
496731 TTTTTTGAAC
* * *
496741 AAACGCCGCTAAAGACTCAG-ACTTTTGTGGCGTTTGTTTAT
1 AAACGCCACTAAAGAATC-GTACTTTAGTGGCGTTT-TTTAT
*
496782 AAACGCCACTAAAGAATCGTA-TTGTATTGGCG-TTTTTAT
1 AAACGCCACTAAAGAATCGTACTT-TAGTGGCGTTTTTTAT
** * *
496821 ACAACGCTGCTAAAGACTCGTACTTTAGTGGCATTTTTATAT
1 A-AACGCCACTAAAGAATCGTACTTTAGTGGCGTTTTT-TAT
* * * ** * * *
496863 AAACGCCGCTATAGACTTATACTTTAGTGACGTTTTAATAC
1 AAACGCCACTAAAGAATCGTACTTTAGTGGCGTTTT-TTAT
* * * * * * * *
496904 AAACGTCGCTATAGACTTGTACTTTAGTGGTGTTTTAATAC
1 AAACGCCACTAAAGAATCGTACTTTAGTGGCGTTTT-TTAT
* * * * * * *
496945 AAACGCCGCTATAGACTCATACTTTAGTGGTGTTATTATAC
1 AAACGCCACTAAAGAATCGTACTTTAGTGGCGTT-TTTTAT
* * * * *
496986 AAATGTCGCTATAGACTC--ACTTTAGTGGCGTTTTTATAT
1 AAACGCCACTAAAGAATCGTACTTTAGTGGCGTTTTT-TAT
** * * * *
497025 AAACGCCGTTATAGACTCGTA-TTGTAGTGTCGTTTTTATAC
1 AAACGCCACTAAAGAATCGTACTT-TAGTGGCGTTTTT-TAT
* * * * *
497066 AAACGCTATTATAGACTCGTACTTTAATGGCGTTTGTGTT-T
1 AAACGCCACTAAAGAATCGTACTTTAGTGGCGTTT-T-TTAT
** * * ** *
497107 GCAAACTTCACTATAGATTCGTACTTTAGTGGTATTTTTATAC
1 --AAACGCCACTAAAGAATCGTACTTTAGTGGCGTTTTT-TAT
* * *
497150 AAACGCCGCCAAAGACA-CTTACTTTAGTGGCGTTT
1 AAACGCCACTAAAGA-ATCGTACTTTAGTGGCGTTT
497185 GTCTTTACAA
Statistics
Matches: 326, Mismatches: 57, Indels: 40
0.77 0.13 0.09
Matches are distributed among these distances:
38 2 0.01
39 36 0.11
40 30 0.09
41 218 0.67
42 12 0.04
43 28 0.09
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (40 bp):
AAACGCCACTAAAGAATCGTACTTTAGTGGCGTTTTTTAT
Found at i:497053 original size:80 final size:81
Alignment explanation
Indices: 496739--497184 Score: 366
Period size: 82 Copynumber: 5.4 Consensus size: 81
496729 TGTTTTTTGA
* * * * * *
496739 ACAAACGCCGCTAAAGACTCAGACTTTTGTGGCGTTTGTT-TATAAACGCCACTAAAGAATCGTA
1 ACAAACGTCGCTAAAGACTC-GACTTTAGTGGCGTTT-TTATATAAACGCCGCTATAGACTCATA
*
496803 -TTGTATTGGCGTTTTTAT
64 CTT-TAGTGGCGTTTTTAT
* *
496821 AC-AACG-CTGCTAAAGACTCGTACTTTAGTGGCATTTTTATATAAACGCCGCTATAGACTTATA
1 ACAAACGTC-GCTAAAGACTCG-ACTTTAGTGGCGTTTTTATATAAACGCCGCTATAGACTCATA
* *
496884 CTTTAGTGACGTTTTAAT
64 CTTTAGTGGCGTTTTTAT
* * * * *
496902 ACAAACGTCGCTATAGACTTGTACTTTAGTGGTGTTTTAATACAAACGCCGCTATAGACTCATAC
1 ACAAACGTCGCTAAAGACTCG-ACTTTAGTGGCGTTTTTATATAAACGCCGCTATAGACTCATAC
* *
496967 TTTAGTGGTGTTATTAT
65 TTTAGTGGCGTTTTTAT
* * * *
496984 ACAAATGTCGCTATAGACTC-ACTTTAGTGGCGTTTTTATATAAACGCCGTTATAGACTCGTA-T
1 ACAAACGTCGCTAAAGACTCGACTTTAGTGGCGTTTTTATATAAACGCCGCTATAGACTCATACT
*
497047 TGTAGTGTCGTTTTTAT
66 T-TAGTGGCGTTTTTAT
** * * * ** ** * * *
497064 ACAAACG-CTATTATAGACTCGTACTTTAATGGCGTTTGTGTTTGCAAACTTCACTATAGATTCG
1 ACAAACGTC-GCTAAAGACTCG-ACTTTAGTGGCGTTT-T-TATATAAACGCCGCTATAGACTCA
**
497128 TACTTTAGTGGTATTTTTAT
62 TACTTTAGTGGCGTTTTTAT
* * * *
497148 ACAAACGCCGCCAAAGACACTTACTTTAGTGGCGTTT
1 ACAAACGTCGCTAAAGACTC-GACTTTAGTGGCGTTT
497185 GTCTTTACAA
Statistics
Matches: 296, Mismatches: 53, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
79 3 0.01
80 68 0.23
81 61 0.21
82 102 0.34
83 2 0.01
84 57 0.19
85 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (81 bp):
ACAAACGTCGCTAAAGACTCGACTTTAGTGGCGTTTTTATATAAACGCCGCTATAGACTCATACT
TTAGTGGCGTTTTTAT
Found at i:500654 original size:42 final size:43
Alignment explanation
Indices: 500548--500656 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 43
500538 AGAAATATTT
500548 TGCTAAATATCATAACCTTTAGCGACGTTTGTAAAAAACATAC
1 TGCTAAATATCATAACCTTTAGCGACGTTTGTAAAAAACATAC
** * * * *
500591 AACTAAATATCATTACATTTAGCGATGTTTTTAAAAAA-A-AGC
1 TGCTAAATATCATAACCTTTAGCGACGTTTGTAAAAAACATA-C
* *
500633 TGCTAAAAAACATAACCTTTAGCG
1 TGCTAAATATCATAACCTTTAGCG
500657 GAATTTGTGA
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
41 1 0.02
42 20 0.38
43 32 0.60
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (43 bp):
TGCTAAATATCATAACCTTTAGCGACGTTTGTAAAAAACATAC
Found at i:508452 original size:90 final size:89
Alignment explanation
Indices: 508341--508516 Score: 298
Period size: 90 Copynumber: 2.0 Consensus size: 89
508331 TAATCCCAAA
* * * *
508341 TATTTAATTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAATCCCTGATATGATT
1 TATTAAATTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGACT
508406 AGGGTAACTTGGATATAAAAGGAT
66 AGGGTAACTTGGATATAAAAGGAT
508430 TATTAAATTCTAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAC
1 TATTAAATTC-AATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGAC
*
508495 TAGGGTAACTTGGCTATAAAAG
65 TAGGGTAACTTGGATATAAAAG
508517 AGTGTGTTAG
Statistics
Matches: 81, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 9 0.11
90 72 0.89
ACGTcount: A:0.45, C:0.07, G:0.11, T:0.37
Consensus pattern (89 bp):
TATTAAATTCAATTAATTAAATATAGATTTAATTAATTTGAAATAATAAAAACCCTAATATGACT
AGGGTAACTTGGATATAAAAGGAT
Found at i:511682 original size:92 final size:90
Alignment explanation
Indices: 511502--511684 Score: 258
Period size: 90 Copynumber: 2.0 Consensus size: 90
511492 GAAGCAACGT
* * *
511502 CTCCTGCAAATAAATGTATGTTTGTCTTAGAAGAAGTTGTAAAAATCTCCTACGCTACCAATTCA
1 CTCCTGCAAATAAATGCATGCTTGTCTTAGAAGAACTTGTAAAAATCTCCTACGCTACCAATTCA
*
511567 ATTATGAATGTCGGATATGAGTATG
66 ATTACGAATGTCGGATATGAGTATG
* * * * *
511592 CTCCTGCAAATACATGCATGCTTGTTTTCGAAGAACTTGTAAAAACTCTCCTATGCTGCTCAATT
1 CTCCTGCAAATAAATGCATGCTTGTCTTAGAAGAACTTGTAAAAA-TCTCCTACGCTAC-CAATT
*
511657 CAATTACGAGTGTCGGATATGAGTATG
64 CAATTACGAATGTCGGATATGAGTATG
511684 C
1 C
511685 GTCCAACACG
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
90 39 0.48
91 11 0.14
92 31 0.38
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.33
Consensus pattern (90 bp):
CTCCTGCAAATAAATGCATGCTTGTCTTAGAAGAACTTGTAAAAATCTCCTACGCTACCAATTCA
ATTACGAATGTCGGATATGAGTATG
Found at i:519793 original size:22 final size:22
Alignment explanation
Indices: 519763--519844 Score: 85
Period size: 22 Copynumber: 3.7 Consensus size: 22
519753 TGGTGCAGGA
*
519763 GGAATCGATACCCCCTTGAAGG
1 GGAACCGATACCCCCTTGAAGG
*
519785 GGAACCGATTCCCCCTTTGAAGG
1 GGAACCGATACCCCC-TTGAAGG
* * *
519808 GGAACTGATTCCCCTTTGAA-G
1 GGAACCGATACCCCCTTGAAGG
*
519829 GGAATCGATACACCCC
1 GGAACCGATAC-CCCC
519845 ACAGGGTCTC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
21 9 0.18
22 21 0.42
23 20 0.40
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (22 bp):
GGAACCGATACCCCCTTGAAGG
Found at i:519804 original size:23 final size:23
Alignment explanation
Indices: 519763--519830 Score: 95
Period size: 22 Copynumber: 3.0 Consensus size: 23
519753 TGGTGCAGGA
* *
519763 GGAATCGATACCCCC-TTGAAGG
1 GGAACCGATTCCCCCTTTGAAGG
519785 GGAACCGATTCCCCCTTTGAAGG
1 GGAACCGATTCCCCCTTTGAAGG
*
519808 GGAACTGATT-CCCCTTTGAAGG
1 GGAACCGATTCCCCCTTTGAAGG
519830 G
1 G
519831 AATCGATACA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
22 26 0.62
23 16 0.38
ACGTcount: A:0.24, C:0.26, G:0.28, T:0.22
Consensus pattern (23 bp):
GGAACCGATTCCCCCTTTGAAGG
Found at i:521933 original size:13 final size:13
Alignment explanation
Indices: 521915--521939 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
521905 TGCCGTGCAC
521915 ATTGATTATGAAT
1 ATTGATTATGAAT
521928 ATTGATTATGAA
1 ATTGATTATGAA
521940 ACTAATGGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.16, T:0.44
Consensus pattern (13 bp):
ATTGATTATGAAT
Found at i:522770 original size:10 final size:10
Alignment explanation
Indices: 522747--522788 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
522737 AACAACAAGA
*
522747 AACAACAATC
1 AACAAGAATC
522757 -ACAAGAATC
1 AACAAGAATC
522766 AACAAGAATC
1 AACAAGAATC
*
522776 AAGAGAGAATC
1 AACA-AGAATC
522787 AA
1 AA
522789 AGAGAAAGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 8 0.29
10 12 0.43
11 8 0.29
ACGTcount: A:0.60, C:0.19, G:0.12, T:0.10
Consensus pattern (10 bp):
AACAAGAATC
Found at i:524795 original size:13 final size:13
Alignment explanation
Indices: 524787--524833 Score: 76
Period size: 13 Copynumber: 3.6 Consensus size: 13
524777 TATGACGCGT
524787 ATTTATGACACAC
1 ATTTATGACACAC
524800 ATTTATGACACAC
1 ATTTATGACACAC
*
524813 ATTTATGACGCAC
1 ATTTATGACACAC
*
524826 ATTAATGA
1 ATTTATGA
524834 TGTTCATTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (13 bp):
ATTTATGACACAC
Found at i:525023 original size:85 final size:84
Alignment explanation
Indices: 524838--525026 Score: 274
Period size: 85 Copynumber: 2.2 Consensus size: 84
524828 TAATGATGTT
*
524838 CATTGAGTGTCATTGAAGCCCCCGTCATAAATTAAGATGACACACATTTGTGTGTCATAAATTTA
1 CATTGAGTGTCATTGAAGCCCCCGTCATAAATT-AGATGACACACATTTGGGTGTCATAAATTTA
524903 TGACACGCATGTATGACTTA
65 TGACACGCATGTATGACTTA
* * *
524923 CATTGCA-CGTCATTGAAGCCCCCGTCATAAATCT-GCTTGACATACATTTGGGTGTCATAAATT
1 CATTG-AGTGTCATTGAAGCCCCCGTCATAAAT-TAG-ATGACACACATTTGGGTGTCATAAATT
524986 TATGACACGCATGTATGACTTA
63 TATGACACGCATGTATGACTTA
* *
525008 CATTGTGTGTTATTGAAGC
1 CATTGAGTGTCATTGAAGC
525027 ACACGCCATT
Statistics
Matches: 93, Mismatches: 7, Indels: 8
0.86 0.06 0.07
Matches are distributed among these distances:
84 1 0.01
85 90 0.97
86 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.33
Consensus pattern (84 bp):
CATTGAGTGTCATTGAAGCCCCCGTCATAAATTAGATGACACACATTTGGGTGTCATAAATTTAT
GACACGCATGTATGACTTA
Found at i:525090 original size:2 final size:2
Alignment explanation
Indices: 525083--525133 Score: 84
Period size: 2 Copynumber: 25.5 Consensus size: 2
525073 TTTCGTAAAT
* *
525083 TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
525125 TA TA TA TA T
1 TA TA TA TA T
525134 TGTAGATTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:526976 original size:11 final size:12
Alignment explanation
Indices: 526947--526976 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
526937 ATATATTGAT
526947 AATCAAATGAAA
1 AATCAAATGAAA
526959 AATCAAATGAAA
1 AATCAAATGAAA
526971 AA-CAAA
1 AATCAAA
526977 CTCGGGATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.70, C:0.10, G:0.07, T:0.13
Consensus pattern (12 bp):
AATCAAATGAAA
Found at i:527591 original size:26 final size:25
Alignment explanation
Indices: 527558--527637 Score: 70
Period size: 26 Copynumber: 3.1 Consensus size: 25
527548 CTTTGTAGTG
527558 TCCCTTCTCCTTTACCCTCTTCCTTT
1 TCCCTTCTCCTTT-CCCTCTTCCTTT
* * * * ** *
527584 TTCTTTCTCTTTTTCCGTCTTCAGTG
1 TCCCTTCTC-CTTTCCCTCTTCCTTT
527610 TCCCTTCTCCTTTCTCCTCTTCCTTT
1 TCCCTTCTCCTTTC-CCTCTTCCTTT
527636 TC
1 TC
527638 AACAAGTTCT
Statistics
Matches: 38, Mismatches: 14, Indels: 4
0.68 0.25 0.07
Matches are distributed among these distances:
25 4 0.11
26 31 0.82
27 3 0.08
ACGTcount: A:0.03, C:0.40, G:0.04, T:0.54
Consensus pattern (25 bp):
TCCCTTCTCCTTTCCCTCTTCCTTT
Found at i:531471 original size:15 final size:15
Alignment explanation
Indices: 531445--531500 Score: 67
Period size: 15 Copynumber: 3.7 Consensus size: 15
531435 GATGCTTTCT
531445 TTTTCCTTCTTTGACG
1 TTTT-CTTCTTTGACG
*
531461 TTTTTTTCTTTGACG
1 TTTTCTTCTTTGACG
* *
531476 TTTTCTTCTTAGACA
1 TTTTCTTCTTTGACG
*
531491 TTGTCTTCTT
1 TTTTCTTCTT
531501 ACCCCATCAA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
15 31 0.89
16 4 0.11
ACGTcount: A:0.09, C:0.20, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTTCTTCTTTGACG
Found at i:548681 original size:20 final size:20
Alignment explanation
Indices: 548658--548697 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
548648 CAGCGGTTCC
548658 CGGTTGAACCGACCGGTCCG
1 CGGTTGAACCGACCGGTCCG
*
548678 CGGTTGAACCGACTGGTCCG
1 CGGTTGAACCGACCGGTCCG
548698 GTCTGGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.33, G:0.35, T:0.17
Consensus pattern (20 bp):
CGGTTGAACCGACCGGTCCG
Found at i:553783 original size:17 final size:17
Alignment explanation
Indices: 553763--553797 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
553753 GTAAAAAAAC
553763 AGTATAGATAA-AGAAAT
1 AGTATA-ATAAGAGAAAT
553780 AGTATAATAAGAGAAAT
1 AGTATAATAAGAGAAAT
553797 A
1 A
553798 TTGTGACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.60, C:0.00, G:0.17, T:0.23
Consensus pattern (17 bp):
AGTATAATAAGAGAAAT
Found at i:553875 original size:17 final size:18
Alignment explanation
Indices: 553827--553877 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 18
553817 ACAGTAAAAG
*
553827 GAAACAATACAAAAAGAA
1 GAAACAATACAAGAAGAA
* * *
553845 GAAATAGTATAAGAAG-A
1 GAAACAATACAAGAAGAA
553862 GAAACAATACAAGAAG
1 GAAACAATACAAGAAG
553878 TAAATATAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.65, C:0.08, G:0.18, T:0.10
Consensus pattern (18 bp):
GAAACAATACAAGAAGAA
Found at i:554394 original size:12 final size:12
Alignment explanation
Indices: 554377--554402 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
554367 ATGTTGCGCG
554377 AAATCGAATGTA
1 AAATCGAATGTA
554389 AAATCGAATGTA
1 AAATCGAATGTA
554401 AA
1 AA
554403 TGGGAAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.08, G:0.15, T:0.23
Consensus pattern (12 bp):
AAATCGAATGTA
Found at i:554884 original size:19 final size:19
Alignment explanation
Indices: 554839--554880 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
554829 CATAAATGAG
554839 GGTTTAAGATAAGTTTTAA
1 GGTTTAAGATAAGTTTTAA
554858 GGTTTAAGATAAGTTTT-A
1 GGTTTAAGATAAGTTTTAA
554876 GGTTT
1 GGTTT
554881 TAAGGTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.31, C:0.00, G:0.24, T:0.45
Consensus pattern (19 bp):
GGTTTAAGATAAGTTTTAA
Found at i:555456 original size:20 final size:22
Alignment explanation
Indices: 555411--555462 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 22
555401 TCGCGAGGAG
*
555411 AGTATCGATACCCCGTCAAGGT
1 AGTATCAATACCCCGTCAAGGT
*
555433 -GTATCAATACCGC-TCAA-GT
1 AGTATCAATACCCCGTCAAGGT
*
555452 AGTATCTATAC
1 AGTATCAATAC
555463 TCGGGAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 2 0.08
20 13 0.50
21 11 0.42
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (22 bp):
AGTATCAATACCCCGTCAAGGT
Found at i:556031 original size:29 final size:30
Alignment explanation
Indices: 555998--556059 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
555988 AAATTTTGTC
*
555998 TAGTGACTAAAATATAAATTTTG-AAAGTT
1 TAGTGACTAAAATATAAACTTTGAAAAGTT
** *
556027 TAGTGGGTAAAGTATAAACTTTGAAAAGTT
1 TAGTGACTAAAATATAAACTTTGAAAAGTT
556057 TAG
1 TAG
556060 GAACCAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 19 0.68
30 9 0.32
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.35
Consensus pattern (30 bp):
TAGTGACTAAAATATAAACTTTGAAAAGTT
Found at i:557828 original size:24 final size:24
Alignment explanation
Indices: 557801--557849 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
557791 TGCATGACAT
*
557801 TGTACATAGATGTTTTCTACATCA
1 TGTACATAGATGTTTTATACATCA
557825 TGTACATAGATGTTTTATACATCA
1 TGTACATAGATGTTTTATACATCA
557849 T
1 T
557850 CAGGAAGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.31, C:0.14, G:0.12, T:0.43
Consensus pattern (24 bp):
TGTACATAGATGTTTTATACATCA
Found at i:570416 original size:17 final size:18
Alignment explanation
Indices: 570375--570430 Score: 62
Period size: 18 Copynumber: 3.1 Consensus size: 18
570365 GTAATTTTTC
*
570375 TTTTCTTATATTGATTA-T
1 TTTTCTTATACTG-TTACT
*
570393 ATTTTC-TATACTGTTTCT
1 -TTTTCTTATACTGTTACT
570411 TTTTCTTATACTGTTACT
1 TTTTCTTATACTGTTACT
570429 TT
1 TT
570431 CACTATACCA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
17 7 0.22
18 20 0.62
19 5 0.16
ACGTcount: A:0.18, C:0.12, G:0.05, T:0.64
Consensus pattern (18 bp):
TTTTCTTATACTGTTACT
Found at i:570949 original size:66 final size:66
Alignment explanation
Indices: 570771--570950 Score: 245
Period size: 66 Copynumber: 2.7 Consensus size: 66
570761 ATCATATAGT
* * *
570771 ACTCCA-CTTCATGCACCACAAAGGTACATGAGTCTCATCGAGTGATATGTACATTATTCAATTA
1 ACTCCACCTT-ATGCACCACAAAGGTACACGAGTCTCATCGAGTGATCTATACATTATTCAATTA
*
570835 TT
65 TC
* * * *
570837 AATCCACATCATGCACCACAAAGGTACACGAGTCTCATCGAGTGATCTATACATTATTCAATTGT
1 ACTCCACCTTATGCACCACAAAGGTACACGAGTCTCATCGAGTGATCTATACATTATTCAATTAT
570902 C
66 C
***
570903 ACTCCACCTTATGCACCACAATCATACACGAGTCTCATCGAGTGATCT
1 ACTCCACCTTATGCACCACAAAGGTACACGAGTCTCATCGAGTGATCT
570951 GAACAATATT
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
66 98 0.99
67 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (66 bp):
ACTCCACCTTATGCACCACAAAGGTACACGAGTCTCATCGAGTGATCTATACATTATTCAATTAT
C
Found at i:580583 original size:135 final size:136
Alignment explanation
Indices: 580317--580626 Score: 324
Period size: 135 Copynumber: 2.3 Consensus size: 136
580307 AGTCACCTGA
* * * * *
580317 AAAATAATATGGTTAGGTGCTCCTGTGCGAGTCACTCTAATCCTTTGGGGCTCTTGTGCGAGTCA
1 AAAATAATATGATTAAGTGCTCCTGTGCGAGTCACTCTAATCATTCGGGGCTCGTGTGCGAGTCA
* * ** * * * *
580382 TCCGGAATAATATGATTATGTACTCTCATGGGAGTTACTTTAATCCTTCGTGTCCCTCATGTGAG
66 TCCAGAATAATATGATTAAGTACTCTCATGCAAGTCACTCTAATCCTTCGGGTCCCACATGTGAG
*
580447 TCATCC
131 TCACCC
* *
580453 AAAATAATATGATTAAGTGTTCC-GTGCGAGTCACTCTAATTATTCGGGGCTCGTGTGCGAGTCA
1 AAAATAATATGATTAAGTGCTCCTGTGCGAGTCACTCTAATCATTCGGGGCTCGTGTGCGAGTCA
* * ** *
580517 -CCAAGAATAATATTATTAAGTGCTCTTGTGCAAGTCACTCTAATCCTTTGGGGCTCCCACA-G-
66 TCC-AGAATAATATGATTAAGTACTCTCATGCAAGTCACTCTAATCC-TTCGGG-TCCCACATGT
580579 GAGTCACCC
128 GAGTCACCC
* * * * *
580588 GAAATAATATGATTAGGTGCTACTGTACGATTCAC-CTAA
1 AAAATAATATGATTAAGTGCTCCTGTGCGAGTCACTCTAA
580627 AATAATATGA
Statistics
Matches: 143, Mismatches: 27, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
134 2 0.01
135 101 0.71
136 34 0.24
137 6 0.04
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (136 bp):
AAAATAATATGATTAAGTGCTCCTGTGCGAGTCACTCTAATCATTCGGGGCTCGTGTGCGAGTCA
TCCAGAATAATATGATTAAGTACTCTCATGCAAGTCACTCTAATCCTTCGGGTCCCACATGTGAG
TCACCC
Found at i:580812 original size:51 final size:51
Alignment explanation
Indices: 580746--580956 Score: 217
Period size: 51 Copynumber: 4.1 Consensus size: 51
580736 ATCATAACAC
* * * * *
580746 ATAACATGGATTTACACCAGTTAAATAATCACGTAATTCCAGCAGTGGTAT
1 ATAACATAGAATTACACCAGTTAAATCATCACTTAATTCCAACAGTGGTAT
* * * * * * *
580797 ATAACATATAATTACACTAGTTAAATCGTTA-TTCTATTCCAGCTGTGGTAT
1 ATAACATAGAATTACACCAGTTAAATCATCACTT-AATTCCAACAGTGGTAT
* * *
580848 ATAACATAGACTTACACCAGTTAAATCATCACTTAATTCTAAAAGTGGTAT
1 ATAACATAGAATTACACCAGTTAAATCATCACTTAATTCCAACAGTGGTAT
* * * * * *
580899 ATAACATAGATTTAAACTAGTTAAATCGTCACTTAATTTCAACAGTGATAT
1 ATAACATAGAATTACACCAGTTAAATCATCACTTAATTCCAACAGTGGTAT
580950 ATAACAT
1 ATAACAT
580957 CGACTTACCG
Statistics
Matches: 130, Mismatches: 28, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
50 1 0.01
51 127 0.98
52 2 0.02
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (51 bp):
ATAACATAGAATTACACCAGTTAAATCATCACTTAATTCCAACAGTGGTAT
Found at i:580951 original size:102 final size:102
Alignment explanation
Indices: 580746--580964 Score: 269
Period size: 102 Copynumber: 2.1 Consensus size: 102
580736 ATCATAACAC
* * ** *
580746 ATAACATGGATTTACACCAGTTAAATAATCACGTAATTCCAGCAGTGGTATATAACATATAATTA
1 ATAACATAGACTTACACCAGTTAAATAATCACGTAATTCCAAAAGTGGTATATAACATAGAATTA
* * * * * *
580811 CACTAGTTAAATCGTTATTCTATTCCAGCTGTGGTAT
66 AACTAGTTAAATCGTCATTCAATTCCAACAGTGATAT
* * * *
580848 ATAACATAGACTTACACCAGTTAAATCATCACTTAATTCTAAAAGTGGTATATAACATAGATTTA
1 ATAACATAGACTTACACCAGTTAAATAATCACGTAATTCCAAAAGTGGTATATAACATAGAATTA
*
580913 AACTAGTTAAATCGTCACTT-AATTTCAACAGTGATAT
66 AACTAGTTAAATCGTCA-TTCAATTCCAACAGTGATAT
*
580950 ATAACATCGACTTAC
1 ATAACATAGACTTAC
580965 CGAGTATCTA
Statistics
Matches: 99, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
102 97 0.98
103 2 0.02
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.33
Consensus pattern (102 bp):
ATAACATAGACTTACACCAGTTAAATAATCACGTAATTCCAAAAGTGGTATATAACATAGAATTA
AACTAGTTAAATCGTCATTCAATTCCAACAGTGATAT
Found at i:585914 original size:89 final size:88
Alignment explanation
Indices: 585810--585979 Score: 232
Period size: 89 Copynumber: 1.9 Consensus size: 88
585800 ATTCCACTAT
* * * * *
585810 TCTTCAGGGAAGATTGAATCTAGGAAGACTTGTTCCACTGCTGCTCAGGGAATATCAAATCTGGA
1 TCTTCAGGGAAGATTGAATCGAGGAAGACTTGTTCCACTGCTCCTCAAGGAAGACCAAATCTGG-
*
585875 AAAAGGGGGATATGCTCCACTGCA
65 AAAAGGGAGATATGCTCCACTGCA
* * * *
585899 TCTTTAGGGAAGATTGAATCGAGGCATACTTGTTCCACTGCTCCTCAAGGAAGACCAAATTTGGA
1 TCTTCAGGGAAGATTGAATCGAGGAAGACTTGTTCCACTGCTCCTCAAGGAAGACCAAATCTGGA
*
585964 CAAGGGAGATATGCTC
66 AAAGGGAGATATGCTC
585980 TGTTACTTCT
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
88 15 0.21
89 55 0.79
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (88 bp):
TCTTCAGGGAAGATTGAATCGAGGAAGACTTGTTCCACTGCTCCTCAAGGAAGACCAAATCTGGA
AAAGGGAGATATGCTCCACTGCA
Found at i:587496 original size:6 final size:6
Alignment explanation
Indices: 587487--587564 Score: 85
Period size: 6 Copynumber: 13.8 Consensus size: 6
587477 CCTTTTATTT
* * *
587487 TTTTTC TTTTTC TTTTTC TTTTTC TCTTT- TGTTTC TTTCT- TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
*
587533 -TTTCC TTTTTC -TTTT- TTTTTC TTTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT
587565 TTCTTCAGGT
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
5 20 0.33
6 40 0.67
ACGTcount: A:0.00, C:0.17, G:0.01, T:0.82
Consensus pattern (6 bp):
TTTTTC
Found at i:587541 original size:33 final size:34
Alignment explanation
Indices: 587479--587565 Score: 99
Period size: 34 Copynumber: 2.6 Consensus size: 34
587469 CTTGAACCCC
* * *
587479 TTTTATTTTTTTTC-TTTTTCTTTTTCTTTTTCT
1 TTTTGTTTCTTTTCTTTTTTCTTTTCCTTTTTCT
587512 CTTTTGTTTC-TTTCTTTTTTC-TTTCCTTTTTCT
1 -TTTTGTTTCTTTTCTTTTTTCTTTTCCTTTTTCT
*
587545 TTTTTTTTCTTTTTCTTTTTT
1 TTTTGTTTC-TTTTCTTTTTT
587566 TCTTCAGGTG
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
32 8 0.17
33 15 0.33
34 23 0.50
ACGTcount: A:0.01, C:0.15, G:0.01, T:0.83
Consensus pattern (34 bp):
TTTTGTTTCTTTTCTTTTTTCTTTTCCTTTTTCT
Found at i:599708 original size:118 final size:122
Alignment explanation
Indices: 599490--599731 Score: 447
Period size: 118 Copynumber: 2.0 Consensus size: 122
599480 TTTTGGTTCT
599490 CTAAAATCTTTCATTTGTTCAAGCTTCGTAGAATCCTCTAACAAATGCAGTGCAAAAATATCAAT
1 CTAAAATCTTTCATTTGTTCAAGCTTCGTAGAATCCTCTAACAAATGCAGTGCAAAAATATCAAT
599555 CTAAAAATGAAATTCCTGAGTGCTCATGTTAAATTGACTATAACAGGTG-TCCTTAA
66 CTAAAAATGAAATTCCTGAGTGCTCATGTTAAATTGACTATAACAGGTGTTCCTTAA
599611 CTAAAATCTTTCATTTGTTCAAGC-TCGTAGAATCCTCTAACAAATGCAGTGC-AAAATATCAAT
1 CTAAAATCTTTCATTTGTTCAAGCTTCGTAGAATCCTCTAACAAATGCAGTGCAAAAATATCAAT
*
599674 CT-AAAATGAAATTCCTGAGTGCTCGTGTTAAATTGACTATAACAGGTGTTCCTTAA
66 CTAAAAATGAAATTCCTGAGTGCTCATGTTAAATTGACTATAACAGGTGTTCCTTAA
599730 CT
1 CT
599732 CCCTTAGTCC
Statistics
Matches: 119, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
118 45 0.38
119 22 0.18
120 28 0.24
121 24 0.20
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (122 bp):
CTAAAATCTTTCATTTGTTCAAGCTTCGTAGAATCCTCTAACAAATGCAGTGCAAAAATATCAAT
CTAAAAATGAAATTCCTGAGTGCTCATGTTAAATTGACTATAACAGGTGTTCCTTAA
Found at i:602452 original size:19 final size:19
Alignment explanation
Indices: 602428--602466 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
602418 ACTTGAAGCC
*
602428 TACTTTACTTGAGCTCTCT
1 TACTTTACTTCAGCTCTCT
* *
602447 TACTTTTCTTCATCTCTCT
1 TACTTTACTTCAGCTCTCT
602466 T
1 T
602467 TAGGCTTTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.13, C:0.28, G:0.05, T:0.54
Consensus pattern (19 bp):
TACTTTACTTCAGCTCTCT
Found at i:607507 original size:20 final size:21
Alignment explanation
Indices: 607453--607515 Score: 65
Period size: 20 Copynumber: 2.9 Consensus size: 21
607443 GATTCCCCTG
607453 TGGGGGGAATCGGTTCCCCTTCAA
1 TGGGGGG-ATCGGTT-CCC-TCAA
* *
607477 AGGGGGAATCGGTTCCCTC-A
1 TGGGGGGATCGGTTCCCTCAA
*
607497 TGGGGGGATCGATTCCCTC
1 TGGGGGGATCGGTTCCCTC
607516 TGCACAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 17 0.50
21 2 0.06
22 3 0.09
23 7 0.21
24 5 0.15
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.24
Consensus pattern (21 bp):
TGGGGGGATCGGTTCCCTCAA
Found at i:616486 original size:12 final size:13
Alignment explanation
Indices: 616463--616518 Score: 59
Period size: 12 Copynumber: 4.7 Consensus size: 13
616453 AAGAACTAGA
616463 TTGAAGCTCGATT
1 TTGAAGCTCGATT
616476 TTGAA-CTCGA--
1 TTGAAGCTCGATT
* *
616486 TTCAAGCTTGATT
1 TTGAAGCTCGATT
616499 TTGAA-CTCGATT
1 TTGAAGCTCGATT
616511 TTG-AGCTC
1 TTGAAGCTC
616519 AATTCGAGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 9
0.73 0.08 0.19
Matches are distributed among these distances:
10 4 0.11
11 5 0.14
12 17 0.49
13 9 0.26
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39
Consensus pattern (13 bp):
TTGAAGCTCGATT
Found at i:616487 original size:23 final size:23
Alignment explanation
Indices: 616455--616510 Score: 85
Period size: 23 Copynumber: 2.4 Consensus size: 23
616445 AAAAATTCAA
* *
616455 GAACTAGATTGAAGCTCGATTTT
1 GAACTCGATTCAAGCTCGATTTT
*
616478 GAACTCGATTCAAGCTTGATTTT
1 GAACTCGATTCAAGCTCGATTTT
616501 GAACTCGATT
1 GAACTCGATT
616511 TTGAGCTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (23 bp):
GAACTCGATTCAAGCTCGATTTT
Found at i:616539 original size:24 final size:23
Alignment explanation
Indices: 616504--616553 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
616494 TGATTTTGAA
* *
616504 CTCGATTTTGAGCTCAATTCGAG
1 CTCGATTATGAGCTCAATTCAAG
*
616527 CTCGAATTATGAGCTCGATTCAAG
1 CTCG-ATTATGAGCTCAATTCAAG
616551 CTC
1 CTC
616554 ATTGGGTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (23 bp):
CTCGATTATGAGCTCAATTCAAG
Found at i:616542 original size:13 final size:12
Alignment explanation
Indices: 616467--616544 Score: 52
Period size: 12 Copynumber: 6.6 Consensus size: 12
616457 ACTAGATTGA
*
616467 AGCTCGATTTTG
1 AGCTCGAATTTG
* **
616479 AACTCG-ATTCA
1 AGCTCGAATTTG
* *
616490 AGCTTGATTTTG
1 AGCTCGAATTTG
* *
616502 AACTCGATTTTG
1 AGCTCGAATTTG
*
616514 AGCTC-AATTCG
1 AGCTCGAATTTG
616525 AGCTCGAATTATG
1 AGCTCGAATT-TG
616538 AGCTCGA
1 AGCTCGA
616545 TTCAAGCTCA
Statistics
Matches: 48, Mismatches: 15, Indels: 5
0.71 0.22 0.07
Matches are distributed among these distances:
11 15 0.31
12 25 0.52
13 8 0.17
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.35
Consensus pattern (12 bp):
AGCTCGAATTTG
Found at i:617754 original size:7 final size:7
Alignment explanation
Indices: 617721--617754 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
617711 ACTCGAATAA
617721 AGGGTTT
1 AGGGTTT
*
617728 AGGATTT
1 AGGGTTT
617735 AGGGTTT
1 AGGGTTT
*
617742 AAGGTTT
1 AGGGTTT
617749 AGGGTT
1 AGGGTT
617755 CATTACAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (7 bp):
AGGGTTT
Found at i:620398 original size:15 final size:15
Alignment explanation
Indices: 620378--620409 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
620368 TAGTGTTTAA
620378 ATTATACATTATTTT
1 ATTATACATTATTTT
620393 ATTATACATTATTTT
1 ATTATACATTATTTT
620408 AT
1 AT
620410 GACCAATTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.59
Consensus pattern (15 bp):
ATTATACATTATTTT
Found at i:625563 original size:2 final size:2
Alignment explanation
Indices: 625556--625589 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
625546 AACTACATGA
*
625556 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
625590 TAAATTTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:634669 original size:21 final size:21
Alignment explanation
Indices: 634643--634682 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
634633 TCAATTGTGT
634643 ATCGATGCACTGCTACAGTGC
1 ATCGATGCACTGCTACAGTGC
*
634664 ATCGATGTACTGCTACAGT
1 ATCGATGCACTGCTACAGT
634683 AACTTTCGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (21 bp):
ATCGATGCACTGCTACAGTGC
Found at i:637776 original size:42 final size:42
Alignment explanation
Indices: 637690--638001 Score: 222
Period size: 43 Copynumber: 7.2 Consensus size: 42
637680 TAAGGGCTTA
* * *
637690 AATTATAAAAATAAAAAGT-ATTATTGAAAAAATTACGGACCTC
1 AATTAT-AAAGTAAAAAGTGA-GATTGAAAAAATTAGGGACCTC
* * *
637733 AATTATAAAGATAAAAAGTGATATTTAAAAAA-TAGGGGCCTC
1 AATTATAAAG-TAAAAAGTGAGATTGAAAAAATTAGGGACCTC
* * * *
637775 AATTTTAAAGTAAAAAATGAGATTGAAAAAACTAAGGG-CCTA
1 AATTATAAAGTAAAAAGTGAGATTGAAAAAA-TTAGGGACCTC
* * *
637817 AATTATGTAAGTAAAAAGTGGGATTGAAAAAATTAGGGACCTT
1 AATTAT-AAAGTAAAAAGTGAGATTGAAAAAATTAGGGACCTC
* * ** *
637860 AATTATGAAGGTAAAAAGTGAGACTGGAAAAAATTA-CAAGCTC
1 AATTAT-AAAGTAAAAAGTGAGA-TTGAAAAAATTAGGGACCTC
* * * * *
637903 AATTATAAAGGTACAAAGTGAGAATGAAAAACTTA-GAATCATC
1 AATTATAAA-GTAAAAAGTGAGATTGAAAAAATTAGGGA-CCTC
* **
637946 AATCATAAATGTAAAAAGT-ATGATTGGAAAAAAAATTAAAGACCTC
1 AATTATAAA-GTAAAAAGTGA-GATT-G--AAAAAATTAGGGACCTC
637992 AATTATAAAG
1 AATTATAAAG
638002 ATAACAAATT
Statistics
Matches: 214, Mismatches: 41, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
41 18 0.08
42 47 0.22
43 115 0.54
44 13 0.06
45 1 0.00
46 19 0.09
47 1 0.00
ACGTcount: A:0.51, C:0.08, G:0.16, T:0.25
Consensus pattern (42 bp):
AATTATAAAGTAAAAAGTGAGATTGAAAAAATTAGGGACCTC
Found at i:649511 original size:13 final size:13
Alignment explanation
Indices: 649493--649526 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
649483 GGGTAGTGTT
649493 CATGTTTTAAAAA
1 CATGTTTTAAAAA
*
649506 CATGTTTTATAAA
1 CATGTTTTAAAAA
*
649519 TATGTTTT
1 CATGTTTT
649527 TACCAAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.35, C:0.06, G:0.09, T:0.50
Consensus pattern (13 bp):
CATGTTTTAAAAA
Found at i:650157 original size:3 final size:3
Alignment explanation
Indices: 650145--650182 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
650135 CTATATCATC
* *
650145 ATT ATT -TT ATT ATT ATT ATT ATT ATA AAT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
650183 TACAAACCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:650329 original size:12 final size:12
Alignment explanation
Indices: 650307--650348 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
650297 AATAAACCAC
650307 ACCC-AAACCCA
1 ACCCAAAACCCA
* *
650318 ACCTATAACCCA
1 ACCCAAAACCCA
650330 ACCCAAAACCCA
1 ACCCAAAACCCA
650342 A-CCAAAA
1 ACCCAAAA
650349 TCCGACCGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.50, C:0.45, G:0.00, T:0.05
Consensus pattern (12 bp):
ACCCAAAACCCA
Found at i:650338 original size:24 final size:24
Alignment explanation
Indices: 650298--650344 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
650288 AAAACCAAAA
650298 ATAAACCACACCCAAACCCAACCT
1 ATAAACCACACCCAAACCCAACCT
*
650322 ATAACCCA-ACCCAAAACCCAACC
1 ATAAACCACACCC-AAACCCAACC
650345 AAAATCCGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.47, C:0.47, G:0.00, T:0.06
Consensus pattern (24 bp):
ATAAACCACACCCAAACCCAACCT
Found at i:650935 original size:20 final size:20
Alignment explanation
Indices: 650891--650935 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
650881 GTAGCCGAAG
*
650891 AGTTTAGGTGGTTTTTGGGT
1 AGTTTAGGTGGTTTTTAGGT
**
650911 AGTTTAGGTTTTTTTTAGGT
1 AGTTTAGGTGGTTTTTAGGT
*
650931 GGTTT
1 AGTTT
650936 TAAGCCCAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.11, C:0.00, G:0.33, T:0.56
Consensus pattern (20 bp):
AGTTTAGGTGGTTTTTAGGT
Found at i:655117 original size:14 final size:14
Alignment explanation
Indices: 655095--655136 Score: 75
Period size: 14 Copynumber: 3.0 Consensus size: 14
655085 TCGATTATAT
*
655095 GTTCGTTTATGTTC
1 GTTCATTTATGTTC
655109 GTTCATTTATGTTC
1 GTTCATTTATGTTC
655123 GTTCATTTATGTTC
1 GTTCATTTATGTTC
655137 AAACAGAACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.12, C:0.14, G:0.17, T:0.57
Consensus pattern (14 bp):
GTTCATTTATGTTC
Found at i:655945 original size:2 final size:2
Alignment explanation
Indices: 655940--655983 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
655930 AAACATAAAG
655940 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
655982 AT
1 AT
655984 GTACATCTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:659457 original size:107 final size:106
Alignment explanation
Indices: 659336--660322 Score: 1545
Period size: 107 Copynumber: 9.3 Consensus size: 106
659326 TCACTTCCTC
* **
659336 TTTCTTCAGGGAGTAGAACTCGAACATTCTTCTTCCTACGGG-CTCGCTCTCTCTTTTCTTCAGG
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTC-CGCTCTCT-TTTTCTTCAGG
* ** *
659400 GAGTAGAACTCGAACAATCATCTTCCTACGGGTCTTCTCTCTC
64 GAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * * *
659443 TTCCTTCAAGGAGTAGAACTCGAACAATCATCTTCCTACGGGTCCGCTCTCTCTTTCTTCAGGGA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGGA
* *
659508 GTAGAACTAGAACAATAATCTTCCTACGGGTCCGCTATCTA
66 GTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * *
659549 TTTATTCAGGGAGTAGAACTCAAACAATAATCTTCCTACGTGTCCGCTCTCTTTTTCTTCAGGGA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGGA
659614 GTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
66 GT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
659656 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCTGCTCTCTTTTTCTTCAGGGA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGGA
659721 GTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
66 GT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* *
659763 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCATACGAGTCCGCTCTCTTTTTCTTCAGGGA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGGA
*
659828 GTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTT
66 GT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
659870 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGG
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGG
** *
659935 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCATTCTCTT
65 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
659977 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGG
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGG
* *
660042 AGTAGAACTTGAACAATAATCTTCCTACGGGTCCGCTCTCTT
65 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
660084 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGCCCGCTCTCTTTTTCTTCAGGG
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGG
*
660149 AGTAAAACTCGAACAATAATCTTCCTACGGGAT-CGCTCTCTA
65 AGTAGAACTCGAACAATAATCTTCCTACGGG-TCCGCTCTCTA
* * *
660191 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCTTACGGGTCCAC-C-CTATTTCTTCAGGG
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGG
660254 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCGC-C-CTA
65 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
660294 TTTTCTTCAGGGAGTAGAACTCGAACAAT
1 -TTTCTTCAGGGAGTAGAACTCGAACAAT
660323 CTTATGTTGC
Statistics
Matches: 828, Mismatches: 46, Indels: 16
0.93 0.05 0.02
Matches are distributed among these distances:
103 17 0.02
104 16 0.02
105 46 0.06
106 108 0.13
107 589 0.71
108 52 0.06
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (106 bp):
TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGGA
GTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
Found at i:659469 original size:53 final size:53
Alignment explanation
Indices: 659336--660322 Score: 1527
Period size: 53 Copynumber: 18.5 Consensus size: 53
659326 TCACTTCCTC
* ** *
659336 TTTCTTCAGGGAGTAGAACTCGAACATTCTTCTTCCTACGGG-CTCGCTCTCTCT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTC-CGCTCTCT-A
* ** *
659390 TTTCTTCAGGGAGTAGAACTCGAACAATCATCTTCCTACGGGTCTTCTCTCTC
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * * *
659443 TTCCTTCAAGGAGTAGAACTCGAACAATCATCTTCCTACGGGTCCGCTCTCTC
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* *
659496 TTTCTTCAGGGAGTAGAACTAGAACAATAATCTTCCTACGGGTCCGCTATCTA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * * *
659549 TTTATTCAGGGAGTAGAACTCAAACAATAATCTTCCTACGTGTCCGCTCTCTT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
659602 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* *
659656 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCTGCTCTCTT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
659709 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * *
659763 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCATACGAGTCCGCTCTCTT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
659816 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTT
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
659870 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
** *
659924 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCATTCTCTT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
659977 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* *
660031 TTTCTTCAGGGAGTAGAACTTGAACAATAATCTTCCTACGGGTCCGCTCTCTT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* *
660084 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGCCCGCTCTCTT
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
660138 TTTCTTCAGGGAGTAAAACTCGAACAATAATCTTCCTACGGGAT-CGCTCTCTA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGG-TCCGCTCTCTA
* *
660191 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCTTACGGGTCCAC-C-CTA
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
660243 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGC-C-CTA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
660294 TTTTCTTCAGGGAGTAGAACTCGAACAAT
1 -TTTCTTCAGGGAGTAGAACTCGAACAAT
660323 CTTATGTTGC
Statistics
Matches: 870, Mismatches: 53, Indels: 22
0.92 0.06 0.02
Matches are distributed among these distances:
51 35 0.04
52 45 0.05
53 409 0.47
54 380 0.44
55 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (53 bp):
TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
Found at i:661687 original size:25 final size:24
Alignment explanation
Indices: 661659--661758 Score: 102
Period size: 26 Copynumber: 4.2 Consensus size: 24
661649 CTTTTATTTG
*
661659 TTTTTGTTTT-ATTTATTTTTTCA
1 TTTTTTTTTTCATTTATTTTTTCA
661682 ---TTTTTTTCATTTATTTTTTCA
1 TTTTTTTTTTCATTTATTTTTTCA
*
661703 TTTATTTTTTCATTTATTTTTTTCA
1 TTTTTTTTTTCATTTA-TTTTTTCA
*
661728 TTTTTTTCATTT-TTTATATTTTTTCA
1 TTTTTTT--TTTCATT-TATTTTTTCA
661754 TTTTT
1 TTTTT
661759 CATTTTTTTT
Statistics
Matches: 65, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
20 6 0.09
21 13 0.20
24 12 0.18
25 14 0.22
26 15 0.23
27 5 0.08
ACGTcount: A:0.14, C:0.07, G:0.01, T:0.78
Consensus pattern (24 bp):
TTTTTTTTTTCATTTATTTTTTCA
Found at i:661698 original size:12 final size:12
Alignment explanation
Indices: 661665--661734 Score: 96
Period size: 12 Copynumber: 6.2 Consensus size: 12
661655 TTTGTTTTTG
661665 TTTT-ATTTATT
1 TTTTCATTTATT
661676 TTTTCA--T-TT
1 TTTTCATTTATT
661685 TTTTCATTTATT
1 TTTTCATTTATT
661697 TTTTCATTTATT
1 TTTTCATTTATT
661709 TTTTCATTTATTT
1 TTTTCATTTA-TT
661722 TTTTCATTT-TT
1 TTTTCATTTATT
661733 TT
1 TT
661735 CATTTTTTAT
Statistics
Matches: 54, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
9 8 0.15
10 1 0.02
11 9 0.17
12 25 0.46
13 11 0.20
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTCATTTATT
Found at i:661706 original size:33 final size:34
Alignment explanation
Indices: 661665--661739 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 34
661655 TTTGTTTTTG
661665 TTTT-ATTTATTTTTTCATTT-TTTTCATTT-A-TT
1 TTTTCATTTATTTTTTCATTTATTTT--TTTCATTT
661697 TTTTCATTTATTTTTTCATTTATTTTTTTCATTT
1 TTTTCATTTATTTTTTCATTTATTTTTTTCATTT
661731 TTTTCATTT
1 TTTTCATTT
661740 TTTATATTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
32 7 0.18
33 17 0.44
34 15 0.38
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (34 bp):
TTTTCATTTATTTTTTCATTTATTTTTTTCATTT
Found at i:661731 original size:46 final size:46
Alignment explanation
Indices: 661665--661781 Score: 149
Period size: 46 Copynumber: 2.6 Consensus size: 46
661655 TTTGTTTTTG
661665 TTTT-ATTTA-TTTTTTCATTTTTTTCATTTATTT-T-TTCATTT-ATT
1 TTTTCATTTATTTTTTTCATTTTTTTCATTT-TTTATATT-ATTTCA-T
*
661709 TTTTCATTTATTTTTTTCATTTTTTTCATTTTTTATATTTTTTCAT
1 TTTTCATTTATTTTTTTCATTTTTTTCATTTTTTATATTATTTCAT
661755 TTTTCATTT-TTTTTTTC-TTTTTTTCAT
1 TTTTCATTTATTTTTTTCATTTTTTTCAT
661782 CTTCAAGCAA
Statistics
Matches: 67, Mismatches: 1, Indels: 10
0.86 0.01 0.13
Matches are distributed among these distances:
44 14 0.21
45 16 0.24
46 34 0.51
47 3 0.04
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.78
Consensus pattern (46 bp):
TTTTCATTTATTTTTTTCATTTTTTTCATTTTTTATATTATTTCAT
Found at i:661749 original size:9 final size:9
Alignment explanation
Indices: 661674--661781 Score: 77
Period size: 9 Copynumber: 12.0 Consensus size: 9
661664 GTTTTATTTA
661674 TTTTTTCAT
1 TTTTTTCAT
661683 TTTTTTCATTT
1 TTTTTTCA--T
661694 ATTTTTTCAT
1 -TTTTTTCAT
661704 TTATTTT--T
1 TT-TTTTCAT
**
661712 TCATTT-AT
1 TTTTTTCAT
661720 TTTTTTCAT
1 TTTTTTCAT
661729 TTTTTTCA-
1 TTTTTTCAT
661737 TTTTTT-AT
1 TTTTTTCAT
661745 ATTTTTTCAT
1 -TTTTTTCAT
*
661755 TTTTCATT-TT
1 TTTT--TTCAT
661765 TTTTTTC-T
1 TTTTTTCAT
661773 TTTTTTCAT
1 TTTTTTCAT
661782 CTTCAAGCAA
Statistics
Matches: 81, Mismatches: 5, Indels: 26
0.72 0.04 0.23
Matches are distributed among these distances:
7 4 0.05
8 23 0.28
9 31 0.38
10 12 0.15
11 3 0.04
12 8 0.10
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTTCAT
Found at i:661771 original size:12 final size:12
Alignment explanation
Indices: 661682--661778 Score: 89
Period size: 12 Copynumber: 8.3 Consensus size: 12
661672 TATTTTTTCA
661682 TTTTTTTCATTT
1 TTTTTTTCATTT
*
661694 ATTTTTTCATTT
1 TTTTTTTCATTT
*
661706 ATTTTTTCATTT
1 TTTTTTTCATTT
661718 ATTTTTTTCA---
1 -TTTTTTTCATTT
661728 TTTTTTTCATTT
1 TTTTTTTCATTT
661740 TTTATATTT--TTT
1 TTT-T-TTTCATTT
**
661752 CATTTTTCATTT
1 TTTTTTTCATTT
661764 TTTTTTTC-TTT
1 TTTTTTTCATTT
661775 TTTT
1 TTTT
661779 CATCTTCAAG
Statistics
Matches: 71, Mismatches: 6, Indels: 17
0.76 0.06 0.18
Matches are distributed among these distances:
9 9 0.13
10 3 0.04
11 8 0.11
12 39 0.55
13 9 0.13
14 3 0.04
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTTTTCATTT
Found at i:667143 original size:12 final size:12
Alignment explanation
Indices: 667121--667162 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
667111 AATAAACCAC
667121 ACCC-AAACCCA
1 ACCCAAAACCCA
* *
667132 ACCTATAACCCA
1 ACCCAAAACCCA
667144 ACCCAAAACCCA
1 ACCCAAAACCCA
667156 A-CCAAAA
1 ACCCAAAA
667163 TCCGACGGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.50, C:0.45, G:0.00, T:0.05
Consensus pattern (12 bp):
ACCCAAAACCCA
Found at i:667152 original size:24 final size:24
Alignment explanation
Indices: 667112--667158 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
667102 AAAACCAAAA
667112 ATAAACCACACCCAAACCCAACCT
1 ATAAACCACACCCAAACCCAACCT
*
667136 ATAACCCA-ACCCAAAACCCAACC
1 ATAAACCACACCC-AAACCCAACC
667159 AAAATCCGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.47, C:0.47, G:0.00, T:0.06
Consensus pattern (24 bp):
ATAAACCACACCCAAACCCAACCT
Found at i:667196 original size:19 final size:19
Alignment explanation
Indices: 667172--667211 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
667162 ATCCGACGGA
667172 GTCTAAACTAAACCCTAGG
1 GTCTAAACTAAACCCTAGG
667191 GTCTAAACTAAACCCTAGG
1 GTCTAAACTAAACCCTAGG
667210 GT
1 GT
667212 AGCTGCCCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (19 bp):
GTCTAAACTAAACCCTAGG
Found at i:667763 original size:19 final size:19
Alignment explanation
Indices: 667721--667763 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
667711 GTAGCCGAAG
*
667721 AGTTTAGGTGGTTTTGGGT
1 AGTTTAGGTGGTTTTAGGT
**
667740 AGTTTAGGTTTTTTTAGGT
1 AGTTTAGGTGGTTTTAGGT
*
667759 GGTTT
1 AGTTT
667764 TAAGCCCAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.12, C:0.00, G:0.35, T:0.53
Consensus pattern (19 bp):
AGTTTAGGTGGTTTTAGGT
Found at i:671916 original size:14 final size:14
Alignment explanation
Indices: 671894--671935 Score: 75
Period size: 14 Copynumber: 3.0 Consensus size: 14
671884 TCGATTATAT
*
671894 GTTCGTTTATGTTC
1 GTTCATTTATGTTC
671908 GTTCATTTATGTTC
1 GTTCATTTATGTTC
671922 GTTCATTTATGTTC
1 GTTCATTTATGTTC
671936 AAACAGAGGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.12, C:0.14, G:0.17, T:0.57
Consensus pattern (14 bp):
GTTCATTTATGTTC
Found at i:672739 original size:2 final size:2
Alignment explanation
Indices: 672734--672765 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
672724 AAACATAAAG
*
672734 AT AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
672766 GTACATCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:673205 original size:242 final size:250
Alignment explanation
Indices: 672775--673253 Score: 677
Period size: 242 Copynumber: 1.9 Consensus size: 250
672765 TGTACATCTA
* *
672775 AAATTTTAGGAGAGGCTAACTTATAAAATTATAGAGGGACGAAACATACTATTAATACAAAATAC
1 AAATTTTAGGAGAGACTAACTTATAAAATTATAGAGGGAAGAAACATACTATTAATACAAAATAC
* *
672840 ATAAAAGAATATCTAAAATATATGTTAATTTAAAATTTTTAAAAATAAAAACTACCCCGATTGTC
66 ATAAAAGAATATCTAAAATATATGATAATTTAAAACTTTTAAAAATAAAAACTACCCCGATTGTC
* **
672905 GCCTGGGTCCATCCCTACCTACACAATCATCTTCCGATGAGATTATATTAGTGAAACACA-C-CA
131 CCCTAAGTCCATCCCTACCTACACAATCATCTTCCGATGAGATTATATTAGTGAAACACACCTCA
* *
672968 -CATTTTCAAACCAAAGTGAAATGGGAAAGGAATAATGCTAGAGGAGAACTTCTG
196 CCATTTGCAAACCAAAGTGAAATGGGAAAGAAATAATGCTAGAGGAGAACTTCTG
* * * * *
673022 AAATTTTAGGAGATACTAACTTATTAAATTTTAGATGGAAGAAACATATTA-TAA-A-AAAATAC
1 AAATTTTAGGAGAGACTAACTTATAAAATTATAGAGGGAAGAAACATACTATTAATACAAAATAC
* * * * * *
673084 ATAAAA-AA-ATCTAAAATATTTGATAATTTAAAACTTTTAAAGATGACAACTACCTCGGTTGTC
66 ATAAAAGAATATCTAAAATATATGATAATTTAAAACTTTTAAAAATAAAAACTACCCCGATTGTC
* * *
673147 CCCTAAGTCCATCCCTACCTACACTATCATCTTCCGGTGATATTATATTAGTGAAACACACCTCA
131 CCCTAAGTCCATCCCTACCTACACAATCATCTTCCGATGAGATTATATTAGTGAAACACACCTCA
* *
673212 CCATTTGCAAACCAAATTGCAATGGGAAAGAAATAATGCTAG
196 CCATTTGCAAACCAAAGTGAAATGGGAAAGAAATAATGCTAG
673254 GATTAGCACC
Statistics
Matches: 204, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
242 101 0.50
243 3 0.01
244 15 0.07
245 38 0.19
246 3 0.01
247 44 0.22
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (250 bp):
AAATTTTAGGAGAGACTAACTTATAAAATTATAGAGGGAAGAAACATACTATTAATACAAAATAC
ATAAAAGAATATCTAAAATATATGATAATTTAAAACTTTTAAAAATAAAAACTACCCCGATTGTC
CCCTAAGTCCATCCCTACCTACACAATCATCTTCCGATGAGATTATATTAGTGAAACACACCTCA
CCATTTGCAAACCAAAGTGAAATGGGAAAGAAATAATGCTAGAGGAGAACTTCTG
Found at i:676227 original size:107 final size:106
Alignment explanation
Indices: 676107--677091 Score: 1482
Period size: 107 Copynumber: 9.3 Consensus size: 106
676097 TCACTTCCTC
* ** *
676107 TTTCTTCAGGGAGTAGAACTCGAACATTCTTCTTCCTAAGGG-CTCGCTCTCTCTTTTCTTCAGG
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTC-CGCTCTCT-TTTTCTTCAGG
* ** *
676171 GAGTAGAACTCGAACAATCATCTTCCTACGGGTCTTCTCTCTC
64 GAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * * *
676214 TTCCTTCAAGGAGTAGAACTCGAACAATCATCTTCCTACGGGTCCGCTCTCTCTTTCTTCAGGGA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGGA
* *
676279 GTAGAACTAGAACAATAATCTTCCTACGGGTCCGCTATCTA
66 GTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * *
676320 TTTATTCATGGAGTAGAACTCAAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGGA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGGA
*
676385 GTAAGAACTCAAACAATAATCTTCCTACGGGTCCGCTCTCTA
66 GT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* *
676427 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTTCTACGGGTCTGCTCTCTTTTTCTTCAGGGA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGGA
676492 GTAAGAACTCGAACAA-AATCTTCCTACGGGTCCGCTCTCTA
66 GT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* *
676533 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCATACGAGTCCGCTCT-TTTTTCTTCAGGGA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGGA
*
676597 GTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTT
66 GT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
676639 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGG
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGG
** *
676704 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCATTCTCTT
65 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
676746 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGG
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGG
* * *
676811 AGTAGAACTTGAACAATAATCTTCCTACGGGTTCGCTCTCTT
65 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
676853 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGCCCGCTCTCTTTTTCTTCAGGG
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGG
*
676918 AGTAAAACTCGAACAATAATCTTCCTACGGGAT-CGCTCTCTA
65 AGTAGAACTCGAACAATAATCTTCCTACGGG-TCCGCTCTCTA
* * *
676960 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCTTACGGGTCCAC-C-CTATTTCTTCAGGG
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGG
677023 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCGC-C-CTA
65 AGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
677063 TTTTCTTTAGGGAGTAGAACTCGAACAAT
1 -TTTCTTCAGGGAGTAGAACTCGAACAAT
677092 CTTATGTTGC
Statistics
Matches: 818, Mismatches: 52, Indels: 20
0.92 0.06 0.02
Matches are distributed among these distances:
103 17 0.02
104 15 0.02
105 76 0.09
106 218 0.27
107 475 0.58
108 17 0.02
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (106 bp):
TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGGA
GTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
Found at i:676240 original size:53 final size:53
Alignment explanation
Indices: 676107--677091 Score: 1464
Period size: 53 Copynumber: 18.5 Consensus size: 53
676097 TCACTTCCTC
* ** * *
676107 TTTCTTCAGGGAGTAGAACTCGAACATTCTTCTTCCTAAGGG-CTCGCTCTCTCT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTC-CGCTCTCT-A
* ** *
676161 TTTCTTCAGGGAGTAGAACTCGAACAATCATCTTCCTACGGGTCTTCTCTCTC
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * * *
676214 TTCCTTCAAGGAGTAGAACTCGAACAATCATCTTCCTACGGGTCCGCTCTCTC
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* *
676267 TTTCTTCAGGGAGTAGAACTAGAACAATAATCTTCCTACGGGTCCGCTATCTA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * * *
676320 TTTATTCATGGAGTAGAACTCAAACAATAATCTTCCTACGGGTCCGCTCTCTT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
676373 TTTCTTCAGGGAGTAAGAACTCAAACAATAATCTTCCTACGGGTCCGCTCTCTA
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * *
676427 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTTCTACGGGTCTGCTCTCTT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
676480 TTTCTTCAGGGAGTAAGAACTCGAACAA-AATCTTCCTACGGGTCCGCTCTCTA
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * *
676533 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCATACGAGTCCGCTCT-TT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
676585 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTT
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
676639 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
** *
676693 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCATTCTCTT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
676746 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* * *
676800 TTTCTTCAGGGAGTAGAACTTGAACAATAATCTTCCTACGGGTTCGCTCTCTT
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
* *
676853 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGCCCGCTCTCTT
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
676907 TTTCTTCAGGGAGTAAAACTCGAACAATAATCTTCCTACGGGAT-CGCTCTCTA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGG-TCCGCTCTCTA
* *
676960 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCTTACGGGTCCAC-C-CTA
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
677012 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGC-C-CTA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
*
677063 TTTTCTTTAGGGAGTAGAACTCGAACAAT
1 -TTTCTTCAGGGAGTAGAACTCGAACAAT
677092 CTTATGTTGC
Statistics
Matches: 860, Mismatches: 59, Indels: 26
0.91 0.06 0.03
Matches are distributed among these distances:
51 35 0.04
52 72 0.08
53 445 0.52
54 307 0.36
55 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (53 bp):
TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTA
Found at i:676409 original size:160 final size:160
Alignment explanation
Indices: 676107--677091 Score: 1488
Period size: 160 Copynumber: 6.2 Consensus size: 160
676097 TCACTTCCTC
* ** * *
676107 TTTCTTCAGGGAGTAGAACTCGAACATTCTTCTTCCTAAGGG-CTCGCTCTCTCTTTTCTTCAGG
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTC-CGCTCTCT-ATTTCTTCAGG
* ** * * *
676171 GAGT-AGAACTCGAACAATCATCTTCCTACGGGTCTTCTCTCTCTTCCTTCAAGGAGTAGAACTC
64 GAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGGAGTAGAACTC
* *
676235 GAACAATCATCTTCCTACGGGTCCGCTCTCTC
129 GAACAATAATCTTCCTACGGGTCCGCTCTCTT
* * * *
676267 TTTCTTCAGGGAGTAGAACTAGAACAATAATCTTCCTACGGGTCCGCTATCTATTTATTCATGGA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGGA
* * *
676332 GT-AGAACTCAAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGGAGTAAGAACTCA
66 GTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGGAGT-AGAACTCG
*
676396 AACAATAATCTTCCTACGGGTCCGCTCTCTA
130 AACAATAATCTTCCTACGGGTCCGCTCTCTT
* * *
676427 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTTCTACGGGTCTGCTCTCTTTTTCTTCAGGGA
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGGA
676492 GTAAGAACTCGAACAA-AATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGGAGTAGAACTCGA
66 GTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGGAGTAGAACTCGA
* *
676556 ACAATAATCTTCATACGAGTCCGCTCT-TT
131 ACAATAATCTTCCTACGGGTCCGCTCTCTT
*
676585 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTTTTTCTTCAGGG
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGG
676650 AGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGGAGTAGAACTCG
65 AGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGGAGTAGAACTCG
**
676715 AACAATAATCTTCCTACGGGTCCATTCTCTT
130 AACAATAATCTTCCTACGGGTCCGCTCTCTT
676746 TTTCTTCAGGGAGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGG
1 TTTCTTCAGGGAGT-AGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGG
* * *
676811 AGT-AGAACTTGAACAATAATCTTCCTACGGGTTCGCTCTCTTTTTCTTCAGGGAGTAAGAACTC
65 AGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGGAGT-AGAACTC
*
676875 GAACAATAATCTTCCTACGGGCCCGCTCTCTT
129 GAACAATAATCTTCCTACGGGTCCGCTCTCTT
*
676907 TTTCTTCAGGGAGTAAAACTCGAACAATAATCTTCCTACGGGAT-CGCTCTCTATTTCTTCAGGG
1 TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGG-TCCGCTCTCTATTTCTTCAGGG
* *
676971 AGTAAGAACTCGAACAATAATCTTCTTACGGGTCCAC-C-CTATTTCTTCAGGGAGTAGAACTCG
65 AGTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGGAGTAGAACTCG
677034 AACAATAATCTTCCTACGGGTCCGC-C-CTAT
130 AACAATAATCTTCCTACGGGTCCGCTCTCT-T
*
677064 TTTCTTTAGGGAGTAGAACTCGAACAAT
1 TTTCTTCAGGGAGTAGAACTCGAACAAT
677092 CTTATGTTGC
Statistics
Matches: 761, Mismatches: 54, Indels: 23
0.91 0.06 0.03
Matches are distributed among these distances:
156 2 0.00
157 28 0.04
158 47 0.06
159 172 0.23
160 350 0.46
161 162 0.21
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (160 bp):
TTTCTTCAGGGAGTAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGGA
GTAAGAACTCGAACAATAATCTTCCTACGGGTCCGCTCTCTATTTCTTCAGGGAGTAGAACTCGA
ACAATAATCTTCCTACGGGTCCGCTCTCTT
Found at i:678428 original size:9 final size:8
Alignment explanation
Indices: 678410--678516 Score: 74
Period size: 9 Copynumber: 12.6 Consensus size: 8
678400 CTTTTATTTG
*
678410 TTTTTGTT
1 TTTTTATT
678418 TTATTTATT
1 TT-TTTATT
*
678427 TTTTCATT
1 TTTTTATT
678435 TTTTTCATT
1 TTTTT-ATT
678444 TATTTT-TT
1 T-TTTTATT
**
678452 CATTTATT
1 TTTTTATT
678460 TTTTTCATT
1 TTTTT-ATT
678469 TTTTTCATT
1 TTTTT-ATT
678478 TTTTATATT
1 TTTT-TATT
*
678487 TTTTCATT
1 TTTTTATT
678495 TTTCATT-TT
1 TTT--TTATT
*
678504 TTTTTCTT
1 TTTTTATT
678512 TTTTT
1 TTTTT
678517 CATCTTCAAG
Statistics
Matches: 81, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
7 5 0.06
8 31 0.38
9 39 0.48
10 6 0.07
ACGTcount: A:0.12, C:0.07, G:0.01, T:0.79
Consensus pattern (8 bp):
TTTTTATT
Found at i:678438 original size:25 final size:24
Alignment explanation
Indices: 678410--678508 Score: 83
Period size: 21 Copynumber: 4.4 Consensus size: 24
678400 CTTTTATTTG
*
678410 TTTTTGTTTT-ATTTATTTTTTCA
1 TTTTTTTTTTCATTTATTTTTTCA
678433 ---TTTTTTTCATTTATTTTTTCA
1 TTTTTTTTTTCATTTATTTTTTCA
678454 TTTATTTTTTTCA--T-TTTTTTCA
1 TTT-TTTTTTTCATTTATTTTTTCA
678476 TTTTTTATATTT--TTTCA-TTTTTCA
1 TTTTTT-T-TTTCATTT-ATTTTTTCA
678500 TTTTTTTTT
1 TTTTTTTTT
678509 CTTTTTTTCA
Statistics
Matches: 64, Mismatches: 1, Indels: 23
0.73 0.01 0.26
Matches are distributed among these distances:
20 6 0.09
21 16 0.25
22 14 0.22
23 6 0.09
24 13 0.20
25 9 0.14
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.79
Consensus pattern (24 bp):
TTTTTTTTTTCATTTATTTTTTCA
Found at i:678449 original size:12 final size:12
Alignment explanation
Indices: 678416--678473 Score: 72
Period size: 12 Copynumber: 5.2 Consensus size: 12
678406 TTTGTTTTTG
678416 TTTT-ATTTATT
1 TTTTCATTTATT
678427 TTTTCA--T-TT
1 TTTTCATTTATT
678436 TTTTCATTTATT
1 TTTTCATTTATT
678448 TTTTCATTTATTT
1 TTTTCATTTA-TT
678461 TTTTCATTT-TT
1 TTTTCATTTATT
678472 TT
1 TT
678474 CATTTTTTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
9 8 0.19
10 1 0.02
11 9 0.21
12 13 0.31
13 11 0.26
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTCATTTATT
Found at i:678468 original size:34 final size:32
Alignment explanation
Indices: 678416--678506 Score: 114
Period size: 34 Copynumber: 2.8 Consensus size: 32
678406 TTTGTTTTTG
678416 TTTTATTTATTTTTTCATTTTTTTCATTTATT
1 TTTTATTTATTTTTTCATTTTTTTCATTTATT
678448 TTTTCATTTATTTTTTTCATTTTTTTCATTT-TT
1 TTTT-ATTTA-TTTTTTCATTTTTTTCATTTATT
*
678481 TATATTTTTTCA-TTTTTCATTTTTTT
1 T-T-TTATTT-ATTTTTTCATTTTTTT
678507 TTCTTTTTTT
Statistics
Matches: 53, Mismatches: 1, Indels: 9
0.84 0.02 0.14
Matches are distributed among these distances:
32 4 0.08
33 22 0.42
34 24 0.45
35 3 0.06
ACGTcount: A:0.14, C:0.08, G:0.00, T:0.78
Consensus pattern (32 bp):
TTTTATTTATTTTTTCATTTTTTTCATTTATT
Found at i:678474 original size:43 final size:42
Alignment explanation
Indices: 678425--678519 Score: 115
Period size: 43 Copynumber: 2.2 Consensus size: 42
678415 GTTTTATTTA
678425 TTTTTTCATTTTTT-TCA-TTTAT-TTTTTCATTTATTTTTTTCAT
1 TTTTTTCATTTTTTAT-ATTTTATATTTTTCA-TT-TTTTTTTC-T
*
678468 TTTTTTCATTTTTTATATTTTTTCATTTTTCATTTTTTTTTCT
1 TTTTTTCATTTTTTATATTTTAT-ATTTTTCATTTTTTTTTCT
678511 TTTTTTCAT
1 TTTTTTCAT
678520 CTTCAAGCAA
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
43 25 0.53
44 13 0.28
45 2 0.04
46 7 0.15
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.78
Consensus pattern (42 bp):
TTTTTTCATTTTTTATATTTTATATTTTTCATTTTTTTTTCT
Found at i:678507 original size:34 final size:32
Alignment explanation
Indices: 678420--678506 Score: 106
Period size: 33 Copynumber: 2.7 Consensus size: 32
678410 TTTTTGTTTT
*
678420 ATTTA-TTTTTTCATTTTTTTCATTTATTTTTTC
1 ATTTATTTTTTTCATTTTTTTCA-TT-TTTTATC
678453 ATTTATTTTTTTCATTTTTTTCATTTTTTAT-
1 ATTTATTTTTTTCATTTTTTTCATTTTTTATC
*
678484 ATTTTTTCATTTTTCATTTTTTT
1 ATTTATT--TTTTTCATTTTTTT
678507 TTCTTTTTTT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
31 6 0.12
32 5 0.10
33 21 0.43
34 17 0.35
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (32 bp):
ATTTATTTTTTTCATTTTTTTCATTTTTTATC
Found at i:678514 original size:17 final size:17
Alignment explanation
Indices: 678460--678507 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
678450 TTCATTTATT
678460 TTTTTCA-TTTTTTTCA
1 TTTTTCATTTTTTTTCA
* *
678476 TTTTTTATATTTTTTCA
1 TTTTTCATTTTTTTTCA
678493 TTTTTCATTTTTTTT
1 TTTTTCATTTTTTTT
678508 TCTTTTTTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
16 6 0.22
17 21 0.78
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTTCATTTTTTTTCA
Found at i:684603 original size:13 final size:13
Alignment explanation
Indices: 684582--684622 Score: 73
Period size: 13 Copynumber: 3.1 Consensus size: 13
684572 GCAAATGTGG
684582 ATGCAAAATGCAAA
1 ATGC-AAATGCAAA
684596 ATGCAAATGCAAA
1 ATGCAAATGCAAA
684609 ATGCAAATGCAAA
1 ATGCAAATGCAAA
684622 A
1 A
684623 GGATTTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 23 0.85
14 4 0.15
ACGTcount: A:0.56, C:0.15, G:0.15, T:0.15
Consensus pattern (13 bp):
ATGCAAATGCAAA
Found at i:684605 original size:6 final size:7
Alignment explanation
Indices: 684582--684622 Score: 68
Period size: 7 Copynumber: 6.1 Consensus size: 7
684572 GCAAATGTGG
684582 ATGCAAA
1 ATGCAAA
684589 ATGCAAA
1 ATGCAAA
684596 ATGC-AA
1 ATGCAAA
684602 ATGCAAA
1 ATGCAAA
684609 ATGC-AA
1 ATGCAAA
684615 ATGCAAA
1 ATGCAAA
684622 A
1 A
684623 GGATTTAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 12 0.38
7 20 0.62
ACGTcount: A:0.56, C:0.15, G:0.15, T:0.15
Consensus pattern (7 bp):
ATGCAAA
Found at i:687554 original size:24 final size:24
Alignment explanation
Indices: 687522--687579 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
687512 AACAACACGC
687522 TGCCGTTTTGACCCTCTCGAACGA
1 TGCCGTTTTGACCCTCTCGAACGA
687546 TGCCGTTTTGACCCTCTCGAACGA
1 TGCCGTTTTGACCCTCTCGAACGA
*
687570 CGCCGTTTTG
1 TGCCGTTTTG
687580 GCGTACAAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.14, C:0.33, G:0.22, T:0.31
Consensus pattern (24 bp):
TGCCGTTTTGACCCTCTCGAACGA
Found at i:688809 original size:14 final size:14
Alignment explanation
Indices: 688790--688824 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
688780 GCTTGAATTC
*
688790 CGGGCTGTTGAGTT
1 CGGGCTGGTGAGTT
688804 CGGGCTTGGTGAGTT
1 CGGGC-TGGTGAGTT
688819 CGGGCT
1 CGGGCT
688825 TGGTTCAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.06, C:0.17, G:0.46, T:0.31
Consensus pattern (14 bp):
CGGGCTGGTGAGTT
Found at i:688816 original size:15 final size:15
Alignment explanation
Indices: 688798--688828 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
688788 TCCGGGCTGT
688798 TGAGTTCGGGCTTGG
1 TGAGTTCGGGCTTGG
688813 TGAGTTCGGGCTTGG
1 TGAGTTCGGGCTTGG
688828 T
1 T
688829 TCAAGCCTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.13, G:0.45, T:0.35
Consensus pattern (15 bp):
TGAGTTCGGGCTTGG
Found at i:689561 original size:231 final size:231
Alignment explanation
Indices: 689158--689602 Score: 626
Period size: 231 Copynumber: 1.9 Consensus size: 231
689148 AAAATTTTTA
* * * * *
689158 AAGGGGACAGCTACCCCAGTTGTCCTCTGGGTCCATCCCTACCTACATTATCATCTTCCAATGTG
1 AAGGGGACAACTACCCCAGTTGTCCCCTAGGTCCATCCCTACCTACACTATCATCTTCCAATGAG
* * * **
689223 ATTATATGAGTGAAACACACCTCACCATTTGCAAACTAAAGTGAAATGAGAGAGGAATAATGCTA
66 ATTATATGAGTGAAACACAACTCACCATTTGCAAACCAAAGTGAAATGAGAAACAAATAATGCTA
** * *
689288 GGGGCGAAATTCTAAAATTTTAGCAAAGGCTAACATATAAAATTCT-AGAGGGATGAAAATATAT
131 GGAACGAAATTCTAAAATTTTAGAAAAGGCTAACATATAAAATTCTGA-AGGGACGAAAATATAT
*
689352 T-TTCAGTACAAAATACATAAAAATATCTAAAATATAT
195 TATT-AATACAAAATACATAAAAATATCTAAAATATAT
** **
689389 AAGGGGACAACTACCCTGGTTGTCCCCTAGGTCCATCCCTACCTACACTATCATCTTCCGGTGAG
1 AAGGGGACAACTACCCCAGTTGTCCCCTAGGTCCATCCCTACCTACACTATCATCTTCCAATGAG
* * *
689454 ATTATATTAGTGAAACACAACTCACCATTTGCAAACCAAAGTGTAGTGAGAAACAAATAATGCTA
66 ATTATATGAGTGAAACACAACTCACCATTTGCAAACCAAAGTGAAATGAGAAACAAATAATGCTA
* *
689519 GGAAC-AGACTTCTAAAATTTTAGAAAAGGCTAACGTATAAAATTCTGAAGGGACGAAAATATAT
131 GGAACGA-AATTCTAAAATTTTAGAAAAGGCTAACATATAAAATTCTGAAGGGACGAAAATATAT
689583 TATTAATACAAAATACATAA
195 TATTAATACAAAATACATAA
689603 TATATATATA
Statistics
Matches: 187, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
230 1 0.01
231 183 0.98
232 3 0.02
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (231 bp):
AAGGGGACAACTACCCCAGTTGTCCCCTAGGTCCATCCCTACCTACACTATCATCTTCCAATGAG
ATTATATGAGTGAAACACAACTCACCATTTGCAAACCAAAGTGAAATGAGAAACAAATAATGCTA
GGAACGAAATTCTAAAATTTTAGAAAAGGCTAACATATAAAATTCTGAAGGGACGAAAATATATT
ATTAATACAAAATACATAAAAATATCTAAAATATAT
Found at i:689609 original size:2 final size:2
Alignment explanation
Indices: 689602--689678 Score: 133
Period size: 2 Copynumber: 40.0 Consensus size: 2
689592 AAAATACATA
689602 AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT -T AT AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
689641 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
689679 GATAATTTAA
Statistics
Matches: 72, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
1 3 0.04
2 69 0.96
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:690273 original size:55 final size:55
Alignment explanation
Indices: 690213--690322 Score: 157
Period size: 55 Copynumber: 2.0 Consensus size: 55
690203 ATATTTTTAA
* * ** *
690213 TTATAATCTAAAATATAAACCTTTTTAGATTGCTATTGTAAATATTATGAAAATG
1 TTATAATCTAAAACATAAACCTTTTTAGATTGCAATCATAAATATTATAAAAATG
* *
690268 TTATAATCTAAAACATTAACTTTTTTAGATTGCAATCATAAATATTATAAAAATG
1 TTATAATCTAAAACATAAACCTTTTTAGATTGCAATCATAAATATTATAAAAATG
690323 ATAACATTTT
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.44, C:0.08, G:0.07, T:0.41
Consensus pattern (55 bp):
TTATAATCTAAAACATAAACCTTTTTAGATTGCAATCATAAATATTATAAAAATG
Found at i:694702 original size:23 final size:23
Alignment explanation
Indices: 694675--694743 Score: 56
Period size: 23 Copynumber: 3.0 Consensus size: 23
694665 GTTTGGACGA
694675 TTTATAATTTATAATTTATAATT
1 TTTATAATTTATAATTTATAATT
* *
694698 TTTAT-TTATTATAATTTCT--TT
1 TTTATAAT-TTATAATTTATAATT
*
694719 TTAAATTAATTTATAA-TTATAATT
1 TT-TA-TAATTTATAATTTATAATT
694743 T
1 T
694744 GTTTAATGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 11
0.69 0.10 0.22
Matches are distributed among these distances:
21 4 0.11
22 5 0.14
23 22 0.63
24 4 0.11
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (23 bp):
TTTATAATTTATAATTTATAATT
Found at i:694709 original size:7 final size:7
Alignment explanation
Indices: 694674--694698 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
694664 TGTTTGGACG
694674 ATTTATA
1 ATTTATA
694681 ATTTATA
1 ATTTATA
694688 ATTTATA
1 ATTTATA
694695 ATTT
1 ATTT
694699 TTATTTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
ATTTATA
Found at i:695341 original size:18 final size:20
Alignment explanation
Indices: 695316--695377 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 20
695306 TTATAATAAA
695316 ATATTAATTATGATAATTA-
1 ATATTAATTATGATAATTAT
* *
695335 A-ATTAATAAAT-ATACTTAAT
1 ATATTAAT-TATGATAATT-AT
695355 ATATTAATTATGATAATTAT
1 ATATTAATTATGATAATTAT
695375 ATA
1 ATA
695378 CTTATATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
18 11 0.32
19 4 0.12
20 8 0.24
21 11 0.32
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (20 bp):
ATATTAATTATGATAATTAT
Found at i:695443 original size:2 final size:2
Alignment explanation
Indices: 695436--695468 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
695426 TTTATTACTT
695436 TA TA TA TA TA TA TA TA TA TA -A TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
695469 CTAATACTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:695796 original size:13 final size:14
Alignment explanation
Indices: 695773--695801 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
695763 TAAATTGAAT
695773 AAATATAAAATTAA
1 AAATATAAAATTAA
695787 AAAT-TAAAATTAA
1 AAATATAAAATTAA
695800 AA
1 AA
695802 CATAAACAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
AAATATAAAATTAA
Found at i:695901 original size:2 final size:2
Alignment explanation
Indices: 695894--695949 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
695884 AAAAGTACAT
695894 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
695936 TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA
695950 ATGTACATTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:696038 original size:6 final size:6
Alignment explanation
Indices: 696021--697302 Score: 1840
Period size: 6 Copynumber: 213.8 Consensus size: 6
696011 TATACTTTAT
* * *
696021 ACATAT ACATAC ACATAC GCATAC ACATAC GA-ATAC ACACAC ACGCATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC -ACATAC ACATAC A--CATAC
*
696071 ACATAC ACATAC ACATAC ACATAC AC--AC ACATAT ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
* * * * * * * *
696117 ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
* * ** * * * * *
696165 ACATGC ACATGC ACATGT ACATGC ACATGC ACATGC ACATGC ACATGC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
* * ** * * * * *
696213 ACATGC ACATGC ACATGT ACATGC ACATGC ACATGC ACATGC ACATGC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
* * * * * * *
696261 ACATCCAC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC
1 ACAT--AC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
* * * * * * * *
696311 ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATCC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
* * * * * *
696359 ACATCC ACATCC TCATCC ACATCC ACATCC ACATAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
696407 ACATAC ACATAC ACAT-- ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
696453 AC-TAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
696500 ACATAC ACATAC ACAT-- ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
696546 ACATAC ACATACAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAC ACAT--AC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
696596 ACATAC ACATAC ACATAC ACAT-- ACATAC ACATAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
696642 ACATAC ACATAC ACATAC ACATAC ACATAC AC--AC ACATAC -CATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
696687 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACAT-- ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
696733 ACATAC ACATAC ATACATAC ACATAC ACATAC AC-TAC ACATAC ACATAC
1 ACATAC ACATAC --ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
696782 ACATAC ACATAC ACATAC ACATAC ACATAC ACATACAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACAT--AC ACATAC ACATAC
696832 ACATAC ACATACAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAC ACAT--AC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
696882 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
696930 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
*
696978 ACATAC ACATAC ACATAC ACATAC AAATAC ACATAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
697026 ACATAC ACATAC ACATAC ATACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC --ACATAC ACATAC ACATAC ACATAC ACATAC
697076 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
697124 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
697172 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
697220 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC ACATAC
*
697268 ACATAC ACATAC ACATAC ACATAC GCATAC ACATA
1 ACATAC ACATAC ACATAC ACATAC ACATAC ACATA
697303 TATTGTATAG
Statistics
Matches: 1223, Mismatches: 22, Indels: 62
0.94 0.02 0.05
Matches are distributed among these distances:
4 24 0.02
5 16 0.01
6 1142 0.93
7 1 0.00
8 40 0.03
ACGTcount: A:0.46, C:0.34, G:0.03, T:0.17
Consensus pattern (6 bp):
ACATAC
Found at i:697704 original size:2 final size:2
Alignment explanation
Indices: 697697--697791 Score: 101
Period size: 2 Copynumber: 49.5 Consensus size: 2
697687 AAAACAATTA
* *
697697 AT AT AT AT AT AT AT AT A- AT AT GT AT A- AT AT GT A- AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
697735 GAC AT GT AC AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
697777 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
697792 GCATATTTAT
Statistics
Matches: 77, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
1 5 0.06
2 71 0.92
3 1 0.01
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.45
Consensus pattern (2 bp):
AT
Found at i:698421 original size:549 final size:535
Alignment explanation
Indices: 697428--698847 Score: 1892
Period size: 549 Copynumber: 2.6 Consensus size: 535
697418 ATAAAATGTG
* * **
697428 TACATTTAAAAAGTTGGTAAACATAATTTGAAAAGAAATTTATTATGTGATTTACATTTTATAGG
1 TACATTTAAAAAGTTGGTGAACATAATTTGAAAATAAATTTATCGTGTGATTTACATTTTATA-G
* * * *
697493 GTTTGTTTTAAATAAATTACAAAAATATAAATAAGTATGGGTCAATTTAAGATACAAATATAATT
65 G---GTTTTAAGTAAATTACAAAAATATAAATAAGTATGGGTCAATTTCATATACAAATATAACT
* * * * *
697558 TGAAGGACTAGATTGAACAAATATGAAATTATAAATTTAAATTTAAATACAATAAAAAACATAAA
127 TGAAGAACTAAATTGAACAAATATAAAATTACAAATTTAAA-TTAAATA-AATAAACAACATAAA
* * *
697623 AGGATCAAATAAAAAAATTG-------T------AAAAT-TAACT----T-AATTGCATTGATTT
190 AGAATCAAATAAAAAAATTGTAAAATATGAGGAAAAAATGTAAATAGAATGAATTGCATTAATTT
* * * *
697669 CAAAAATTGGGGAAAATTAAAACAATTA-ATATATATATATATAT-AATATGTATAATATGTAAT
255 CAAAAGTTGGGGAAAACTAAAACAATTATA-ATATATATATA-ATGAATAT-TATGATA-AT-AT
* * * * * * * *
697732 AATGACATGTACAT-T-ATATATATATATA-TATATATATATATATATATATATATATATATAGC
315 GATG-CATATATATATAATGTACAT-TATACTTTATATATATATATATACATATACATATATAGC
697794 ATATTTATATTTTATAGTATATAAAGTCCAAATTGAACAAAAATGAAATTGGAAATAAAAAATTG
378 ATATTTATATTTTATAGTATATAAAGTCCAAATTGAACAAAAATGAAATTGGAAATAAAAAATTG
697859 AATAAAGTAAGCAACACACAATGTCGAGGGATGAAATAAAATTAATTATAAAATGTGGATTTGAT
443 AATAAAGTAAGCAACACACAATGTCGAGGGATGAAATAAAATTAATTATAAAATGTGGATTTGAT
*
697924 ATTAATATAAAAAATAGACTAAATTGCA
508 ATTAATATAAAAAATAGAATAAATTGCA
697952 TACATTTAAAAAGTTGGTGAACATAATTTGAAAATAAATTTATCGTGTGATTTACATTTTATAGG
1 TACATTTAAAAAGTTGGTGAACATAATTTGAAAATAAATTTATCGTGTGATTTACATTTTATAGG
698017 GTTTTAAGTAAATTACAAAAATATAAATAAGTATGGGTCAATTTCATATACAAATATAACTTGAA
66 GTTTTAAGTAAATTACAAAAATATAAATAAGTATGGGTCAATTTCATATACAAATATAACTTGAA
*
698082 GAACTAAATTGAACAAATATGAAATTACAAATTTAAA-TACAAT-AA-AAA-AACATAAAAGAAT
131 GAACTAAATTGAACAAATATAAAATTACAAATTTAAATTA-AATAAATAAACAACATAAAAGAAT
* * * * *
698143 CAAATAAAAAAATTGTAAAATGTTAGGAAAAATTGTAAAATTA-ACTGAATTGCATTGATTTCAA
195 CAAATAAAAAAATTGTAAAATATGAGGAAAAAATGT-AAA-TAGAATGAATTGCATTAATTTCAA
* * * *
698207 AAGTTGGGGAGAATTAAAATATATATATAATATGCATAATATGTATAATGAATGTTATGATAATA
258 AAGTTGGGGAAAACTAAAACA-AT-TAT-A-AT--AT-ATA--TATAATGAATATTATGATAATA
698272 TGATGCATATATATATATAATGTACATTATACTTTATATATATATATATACATATACATATATA-
314 TGATGC--ATATATATATAATGTACATTATACTTTATATATATATATATACATATACATATATAG
698336 CTTATATTTTATAGTTTATATATGTATATAAAGTCCAAATTGAACAAAAATGAAATTGGAAATAA
377 C--ATA-TTTATA-TTT-TATA-GTATATAAAGTCCAAATTGAACAAAAATGAAATTGGAAATAA
* **
698401 AAAATTGAATAAAGTAAGCAACACACATTGTCGAGGGATGAAATTGAATTAATTATAAAATGTGG
436 AAAATTGAATAAAGTAAGCAACACACAATGTCGAGGGATGAAATAAAATTAATTATAAAATGTGG
698466 ATTTGATATTAATATAAAAAATAGAATAAATTGCA
501 ATTTGATATTAATATAAAAAATAGAATAAATTGCA
*
698501 TACATTTATAAAGTTGGTGAACATAATTTGAAAATAAATTTATCGTGTGATTTACATTTTATAGG
1 TACATTTAAAAAGTTGGTGAACATAATTTGAAAATAAATTTATCGTGTGATTTACATTTTATAGG
698566 GTTTTAAGTAAATTACAAAAATATAAATAAGTATGGGTCAATTTCATATACAAATATAACTTGAA
66 GTTTTAAGTAAATTACAAAAATATAAATAAGTATGGGTCAATTTCATATACAAATATAACTTGAA
* *
698631 GGACTAAATTGAACAAATATAAAATTACAAATTTAAATTTAAATACAATAAACAACATAAAAGGA
131 GAACTAAATTGAACAAATATAAAATTACAAATTTAAA-TTAAATA-AATAAACAACATAAAAGAA
*
698696 TCAAATCAAAAAATTGTAAAATATGAGGAAAAAATGTAAATAGAATGAATTGCATTAATTTCAAA
194 TCAAATAAAAAAATTGTAAAATATGAGGAAAAAATGTAAATAGAATGAATTGCATTAATTTCAAA
*
698761 AGTTGGGGAAAACTAAAACAATTATAATATATATATAATGAATATTATGATAATATGATGCATGT
259 AGTTGGGGAAAACTAAAACAATTATAATATATATATAATGAATATTATGATAATATGATGCATAT
698826 ATATATAATGTACATTATACTT
324 ATATATAATGTACATTATACTT
698848 ATGTATAGAT
Statistics
Matches: 800, Mismatches: 47, Indels: 80
0.86 0.05 0.09
Matches are distributed among these distances:
515 27 0.03
516 3 0.00
517 2 0.00
518 2 0.00
519 3 0.00
520 95 0.12
522 1 0.00
523 2 0.00
524 59 0.07
528 4 0.00
529 1 0.00
530 2 0.00
531 1 0.00
534 1 0.00
535 35 0.04
536 2 0.00
537 2 0.00
539 4 0.00
540 1 0.00
541 7 0.01
542 35 0.04
543 14 0.02
544 70 0.09
545 3 0.00
546 9 0.01
547 5 0.01
548 4 0.00
549 304 0.38
550 4 0.00
551 5 0.01
552 6 0.01
553 43 0.05
554 44 0.05
ACGTcount: A:0.49, C:0.06, G:0.12, T:0.34
Consensus pattern (535 bp):
TACATTTAAAAAGTTGGTGAACATAATTTGAAAATAAATTTATCGTGTGATTTACATTTTATAGG
GTTTTAAGTAAATTACAAAAATATAAATAAGTATGGGTCAATTTCATATACAAATATAACTTGAA
GAACTAAATTGAACAAATATAAAATTACAAATTTAAATTAAATAAATAAACAACATAAAAGAATC
AAATAAAAAAATTGTAAAATATGAGGAAAAAATGTAAATAGAATGAATTGCATTAATTTCAAAAG
TTGGGGAAAACTAAAACAATTATAATATATATATAATGAATATTATGATAATATGATGCATATAT
ATATAATGTACATTATACTTTATATATATATATATACATATACATATATAGCATATTTATATTTT
ATAGTATATAAAGTCCAAATTGAACAAAAATGAAATTGGAAATAAAAAATTGAATAAAGTAAGCA
ACACACAATGTCGAGGGATGAAATAAAATTAATTATAAAATGTGGATTTGATATTAATATAAAAA
ATAGAATAAATTGCA
Found at i:698869 original size:8 final size:8
Alignment explanation
Indices: 698856--698883 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
698846 TTATGTATAG
698856 ATTAATAC
1 ATTAATAC
698864 ATTAATAC
1 ATTAATAC
698872 ATTAATAC
1 ATTAATAC
698880 ATTA
1 ATTA
698884 TAAGTTTGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (8 bp):
ATTAATAC
Found at i:698937 original size:23 final size:24
Alignment explanation
Indices: 698893--698958 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
698883 ATAAGTTTGT
* *
698893 GTGTTTATATATATAAACTAT-AA
1 GTGTATATATATATAAAGTATAAA
*
698916 G-GTATATATACTTTAAAGTATAAA
1 GTGTATATATA-TATAAAGTATAAA
698940 GTGTATATATATATAAAGT
1 GTGTATATATATATAAAGT
698959 TTTAGTATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
22 8 0.22
23 9 0.25
24 10 0.28
25 9 0.25
ACGTcount: A:0.44, C:0.03, G:0.12, T:0.41
Consensus pattern (24 bp):
GTGTATATATATATAAAGTATAAA
Found at i:698991 original size:3 final size:3
Alignment explanation
Indices: 698983--699043 Score: 56
Period size: 3 Copynumber: 20.0 Consensus size: 3
698973 TATATATTAT
*
698983 ATA ATA ATA ATA ATA ATA ATA AT- ATA A-A AT- ATA AGA ATA TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
699026 TATA CATA TATA ATA ATA
1 -ATA -ATA -ATA ATA ATA
699044 CAAATTATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
2 6 0.12
3 31 0.62
4 13 0.26
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:699016 original size:27 final size:28
Alignment explanation
Indices: 698986--699074 Score: 85
Period size: 29 Copynumber: 3.1 Consensus size: 28
698976 ATATTATATA
698986 ATAATAATA-ATAATA-ATAATATAAAAT
1 ATAA-AATATATAATACATAATATAAAAT
699013 ATAAGAATATATATATACAT-ATATAATAAT
1 ATAA-AATATATA-ATACATAATATAA-AAT
* * *
699043 ACAAATTATATAAGTATATAATATAAAAT
1 ATAAAATATATAA-TACATAATATAAAAT
699072 ATA
1 ATA
699075 TAAGTATTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
27 8 0.16
28 4 0.08
29 25 0.49
30 14 0.27
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (28 bp):
ATAAAATATATAATACATAATATAAAAT
Found at i:699039 original size:37 final size:38
Alignment explanation
Indices: 698981--699077 Score: 110
Period size: 39 Copynumber: 2.5 Consensus size: 38
698971 TATATATATT
*
698981 ATATAATAATAATAATA-ATAATAATATAAA-ATATAAGA
1 ATATAAT-ATAA-AATATATAATAATACAAATATATAAGA
* *
699019 ATAT-ATATATACATATATAATAATACAAATTATATAAGT
1 ATATAATATA-AAATATATAATAATACAAA-TATATAAGA
699058 ATATAATATAAAATATATAA
1 ATATAATATAAAATATATAA
699078 GTATTATATA
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
36 6 0.12
37 15 0.30
38 4 0.08
39 20 0.40
40 5 0.10
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (38 bp):
ATATAATATAAAATATATAATAATACAAATATATAAGA
Found at i:699052 original size:25 final size:22
Alignment explanation
Indices: 699023--699177 Score: 99
Period size: 20 Copynumber: 7.0 Consensus size: 22
699013 ATAAGAATAT
699023 ATATATACA-TATATAATAATACAA
1 ATATATA-AGTATATAAT-ATA-AA
699047 ATTATATAAGTATATAATATAAA
1 A-TATATAAGTATATAATATAAA
*
699070 ATATATAAGTAT-T-ATATATTA
1 ATATATAAGTATATAATATA-AA
*
699091 A-GTATAAGTATATAATAT-AA
1 ATATATAAGTATATAATATAAA
* * *
699111 A-GTATAAGTATATTATATAGAG
1 ATATATAAGTATATAATATA-AA
* * *
699133 AGAGTATAATTATA-AAGAATAAA
1 ATA-TATAAGTATATAA-TATAAA
* *
699156 GTATATAAGCATATAATATAAA
1 ATATATAAGTATATAATATAAA
699178 GTGTATATAT
Statistics
Matches: 105, Mismatches: 15, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
20 32 0.30
21 4 0.04
22 30 0.29
23 8 0.08
24 17 0.16
25 14 0.13
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.35
Consensus pattern (22 bp):
ATATATAAGTATATAATATAAA
Found at i:699096 original size:22 final size:22
Alignment explanation
Indices: 699038--699184 Score: 119
Period size: 22 Copynumber: 6.8 Consensus size: 22
699028 TACATATATA
* *
699038 ATAATACAAATTATATAAGTAT
1 ATAATATAAAGTATATAAGTAT
*
699060 ATAATATAAAATATATAAGTAT
1 ATAATATAAAGTATATAAGTAT
*
699082 -TATATATTAAG--TATAAGTAT
1 ATA-ATATAAAGTATATAAGTAT
699102 ATAATATAAAG--TATAAGTAT
1 ATAATATAAAGTATATAAGTAT
* *
699122 ATTATATAGAGAG-AGTATAATTAT
1 ATAATATA-A-AGTA-TATAAGTAT
* *
699146 A-AAGAATAAAGTATATAAGCAT
1 ATAA-TATAAAGTATATAAGTAT
*
699168 ATAATATAAAGTGTATA
1 ATAATATAAAGTATATA
699185 TATATGTATA
Statistics
Matches: 103, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
20 32 0.31
21 5 0.05
22 49 0.48
23 5 0.05
24 12 0.12
ACGTcount: A:0.53, C:0.01, G:0.10, T:0.35
Consensus pattern (22 bp):
ATAATATAAAGTATATAAGTAT
Found at i:699188 original size:2 final size:2
Alignment explanation
Indices: 699181--699889 Score: 113
Period size: 2 Copynumber: 359.5 Consensus size: 2
699171 ATATAAAGTG
* * *
699181 TA TA TA TA TG TA TA CTT TA TA GTT TA TA TA TA TA CT- TA TA TA
1 TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA -TA TA TA TA
* * * *
699223 -A TT TA TA TT TA -A TA CT- TA TA TA CTT TA TA T- TA TA TA CTT
1 TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA -TA
* *
699262 TA TA T- TA TA TA TA TA TA TA T- TA TA AA TA TA TA TA CTT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA
* * *
699303 T- TT TA TA TA TA TA TA T- TT TA TA T- TA TA TA CT- TA TA AA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA
* * *
699341 TT TA GTC TT TA TA T- TA CT- TA TA TA TA TA TA TA CT- TA TA CT-
1 TA TA -TA TA TA TA TA TA -TA TA TA TA TA TA TA TA -TA TA TA -TA
* *
699381 TA TA T- TA T- TA TA TA TG TA TA TA TA TA CTT TA TA TA CT- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA
* *
699422 TA -A T- TA TA T- TA TA TA CT- TA TA TA CTT TA GTA TT TA TA -A
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA -TA TA TA TA TA
*
699460 T- TA CTT TA TA TA TA TA -A TA TA CT- TA TA CT- TGA TA TA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA -TA TA TA -TA T-A TA TA TA TA
* *
699500 TA TA TA TA TA TGA TT TA TA GT- TA TA TA TA CT- TA TA TA CTT TA
1 TA TA TA TA TA T-A TA TA TA -TA TA TA TA TA -TA TA TA TA -TA TA
* * * * * *
699542 TA TT TA AA CTA TA TA AA CTA TA TA -A TT TA TA CA AA GTA TA TA
1 TA TA TA TA -TA TA TA TA -TA TA TA TA TA TA TA TA TA -TA TA TA
* * ** *
699584 TA -A TT TA TA -A T- TA TA CTA TA AA TA TA -A GC TG TA TA TA T-
1 TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
* *
699622 TA TA -A TA TA -A T- TCA TA TA TA -A TT TA TA TA TA CA CTA TA TA
1 TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA -TA TA TA
* * * * *
699662 GTT TA TA T- TA -A TA AA CTA TA TA -A TT TA TA CA TA T- TA AA TA
1 -TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
699702 TA -A TA TA TA TA TA TA GTA TA TGA TA -A TA TA AA TA TA AA T- TA
1 TA TA TA TA TA TA TA TA -TA TA T-A TA TA TA TA TA TA TA TA TA TA
* * * * * *
699743 TA TA GTT TA TA TA CA T- TG TT TA TA TA TA CA -A TA TA TA TA CTT
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
* * * *
699785 TT TA TA TA CA CTA TA TA GTT TA TA TA TA GTT TA TA T- TA -A TA
1 TA TA TA TA TA -TA TA TA -TA TA TA TA TA -TA TA TA TA TA TA TA
* * * * *
699826 AA T- TA TA TA GTT TA TA CA TA -A TA TA TA GT- TCA TA CA TA GTG
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA -TA T-A TA TA TA -TA
* *
699867 TG TG TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA T
699890 CTTTCAATTT
Statistics
Matches: 507, Mismatches: 102, Indels: 196
0.63 0.13 0.24
Matches are distributed among these distances:
1 54 0.11
2 404 0.80
3 49 0.10
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:699194 original size:24 final size:24
Alignment explanation
Indices: 699167--699213 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
699157 TATATAAGCA
699167 TATAATATAAAGTGTATATATATG
1 TATAATATAAAGTGTATATATATG
* * * *
699191 TATACTTTATAGTTTATATATAT
1 TATAATATAAAGTGTATATATAT
699214 ACTTATATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49
Consensus pattern (24 bp):
TATAATATAAAGTGTATATATATG
Found at i:699206 original size:7 final size:7
Alignment explanation
Indices: 699191--699265 Score: 66
Period size: 7 Copynumber: 10.6 Consensus size: 7
699181 TATATATATG
699191 TATACTT
1 TATACTT
*
699198 TATAGTT
1 TATACTT
*
699205 TATA-TA
1 TATACTT
699211 TATACTT
1 TATACTT
*
699218 ATATAATT
1 -TATACTT
699226 TATA-TT
1 TATACTT
699232 TAATACTT
1 T-ATACTT
699240 ATATACTT
1 -TATACTT
699248 TATA-TT
1 TATACTT
699254 ATATACTT
1 -TATACTT
699262 TATA
1 TATA
699266 TTATATATAT
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
6 10 0.18
7 30 0.53
8 16 0.28
9 1 0.02
ACGTcount: A:0.37, C:0.07, G:0.01, T:0.55
Consensus pattern (7 bp):
TATACTT
Found at i:699211 original size:22 final size:20
Alignment explanation
Indices: 699183--699544 Score: 147
Period size: 22 Copynumber: 17.2 Consensus size: 20
699173 ATAAAGTGTA
699183 TATATATGTATACTTTATAGTT
1 TATATAT-TATACTTTATA-TT
699205 TATATA-TATACTTATATAATT
1 TATATATTATACTT-TAT-ATT
699226 TATAT-TTAATACTTATATACTT
1 TATATATT-ATACTT-TATA-TT
699248 TATAT-TATATACTTTATA-T
1 TATATAT-TATACTTTATATT
699267 TATATA-TATA---TATATT
1 TATATATTATACTTTATATT
*
699283 ATAAATATATATACTTTATATTT
1 -TATATAT-TATACTTTATA-TT
*
699306 TATATATATATATTTTATA-T
1 TATATAT-TATACTTTATATT
*
699326 TATATACTTATAAATTT-TAGTCT
1 TATATA-TTAT-ACTTTATA-T-T
*
699349 T-TATA-T-TACTTATATATA
1 TATATATTATACTT-TATATT
699367 TATATACTTATAC-TTATATTAT
1 TATATA-TTATACTTTATA-T-T
*
699389 TATATATGTATA-TATATACTT
1 TATATAT-TATACTTTATA-TT
699410 TATATACTTATA-TAATTATA-T
1 TATATA-TTATACT--TTATATT
699431 TATATACTTATATACTTTAGTATT
1 TATATA--T-TATACTTTA-TATT
699455 TATA-A-T-TACTTTATATAT
1 TATATATTATACTTTATAT-T
* *
699473 ATAATATACTTATACTTGATATA
1 -T-ATATA-TTATACTTTATATT
*
699496 TATATA-TATA-TATATGATT
1 TATATATTATACTTTAT-ATT
699515 TATAGTTATATATACTTATATACTT
1 TATA--TAT-TATACTT-TATA-TT
699540 TATAT
1 TATAT
699545 TTAAACTATA
Statistics
Matches: 270, Mismatches: 17, Indels: 105
0.69 0.04 0.27
Matches are distributed among these distances:
15 4 0.01
16 1 0.00
17 8 0.03
18 19 0.07
19 29 0.11
20 29 0.11
21 52 0.19
22 80 0.30
23 22 0.08
24 17 0.06
25 9 0.03
ACGTcount: A:0.39, C:0.06, G:0.02, T:0.54
Consensus pattern (20 bp):
TATATATTATACTTTATATT
Found at i:699281 original size:29 final size:29
Alignment explanation
Indices: 699238--699572 Score: 142
Period size: 29 Copynumber: 11.5 Consensus size: 29
699228 TATTTAATAC
699238 TTATATACTTTATATTATATACT-T-TATA
1 TTATATACTTTATATTATATA-TATATATA
*
699266 TTATATA---TATA-TATAT-TATAAATA
1 TTATATACTTTATATTATATATATATATA
*
699290 -TATATACTTTATATTTTATATATATATA
1 TTATATACTTTATATTATATATATATATA
* * * *
699318 TTTTATA-TTATATACTTATAAAT-TTTAGTCT
1 TTATATACTT-TATA-TTATATATATATA-T-A
699349 TTATATTAC-TTATATATATATATACT-TATA
1 TTATA-TACTTTATAT-TATATATA-TATATA
*
699379 CTTATAT--TATTATA-TATGTATATATATA
1 -TTATATACT-TTATATTATATATATATATA
*
699407 CTTTATATACTTATATAATTATAT-TATATA-C
1 --TTATATACTT-TAT-ATTATATATATATATA
699438 TTATATACTTTAGTATTTATAATTACTTTATATATA
1 TTATATACTTTA-TA-TTAT-A-TA---TATATATA
*
699474 TAATATAC-TTATACTTGATATATATATATA
1 TTATATACTTTATA-TT-ATATATATATATA
*
699504 -TATATA--TGAT-TTATAGT-TATATATA
1 TTATATACTTTATATTATA-TATATATATA
* *
699529 CTTATATACTTTATATT-TAAACTATATAAA
1 -TTATATACTTTATATTATATA-TATATATA
* *
699559 CTATATAATTTATA
1 TTATATACTTTATA
699573 CAAAGTATAT
Statistics
Matches: 237, Mismatches: 25, Indels: 89
0.68 0.07 0.25
Matches are distributed among these distances:
22 1 0.00
23 7 0.03
24 8 0.03
25 15 0.06
26 7 0.03
27 11 0.05
28 33 0.14
29 55 0.23
30 33 0.14
31 25 0.11
32 12 0.05
33 7 0.03
34 5 0.02
35 11 0.05
36 7 0.03
ACGTcount: A:0.40, C:0.06, G:0.02, T:0.53
Consensus pattern (29 bp):
TTATATACTTTATATTATATATATATATA
Found at i:699527 original size:105 final size:99
Alignment explanation
Indices: 699217--699535 Score: 350
Period size: 105 Copynumber: 3.1 Consensus size: 99
699207 TATATATACT
699217 TATATAATTTATATT-TAATACTTATATACTTTA-TA-TTATA-TACTTTATAT-TATATATA-T
1 TATATAA-TTATATTAT-ATACTTATATACTTTAGTATTTATATTACTTTATATATATATATACT
* *
699276 ATATA-TTATAAATATATATACTTTATAT-TTTATATA
64 -TATACTTATATATATATATA-TATATATATTTATATA
* * * *
699312 TATATATTTTATATTATATACTTATAAATTTTAGTCTTTATATTAC-TTATATATATATATACTT
1 TATATA-ATTATATTATATACTTATATACTTTAGTATTTATATTACTTTATATATATATATACTT
699376 ATACTTATATTATTATATATGTATATATATACTTTATATA
65 ATACTTATA-TA-TATATA--TATATATATA-TTTATATA
699416 CTTATATAATTATATTATATACTTATATACTTTAGTATTTATAATTACTTTATATATATAATATA
1 --TATATAATTATATTATATACTTATATACTTTAGTATTTAT-ATTACTTTATATATAT-ATATA
699481 CTTATACTTGATATATATATATATATATATGATTTATAGTTA
62 CTTATACTT-ATATATATATATATATATAT-ATTTATA--TA
*
699523 TATATACTTATAT
1 TATATAATTATAT
699536 ACTTTATATT
Statistics
Matches: 190, Mismatches: 11, Indels: 36
0.80 0.05 0.15
Matches are distributed among these distances:
95 27 0.14
96 2 0.01
97 11 0.06
98 15 0.08
99 6 0.03
100 1 0.01
101 6 0.03
102 6 0.03
103 2 0.01
104 8 0.04
105 57 0.30
106 12 0.06
107 18 0.09
108 16 0.08
109 3 0.02
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (99 bp):
TATATAATTATATTATATACTTATATACTTTAGTATTTATATTACTTTATATATATATATACTTA
TACTTATATATATATATATATATATATTTATATA
Done.