Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007999.1 Hibiscus syriacus cultivar Beakdansim tig00110450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11700749
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 30 of 50
Found at i:7321685 original size:138 final size:138
Alignment explanation
Indices: 7321434--7321694 Score: 364
Period size: 138 Copynumber: 1.9 Consensus size: 138
7321424 TTTCGACATA
*
7321434 AATTATATATAAAAATTATCGATTGATTTTGTGTAATGCATAAGGGTGCATTTTCGTATCAGTAC
1 AATTATATATAAAAATTATCGATCGATTTTGTGTAATGCATAAGGGTGCATTTTCGTATCAGTAC
* *
7321499 TATTTGCACTTTCGACACTAGATGTGCAATCATGGTATTCATAATGAGTTTATGAATTACCATTT
66 TATGTGCACTTTCGACACTAGATGTGCAATCATGGAATTCATAATGAGTTTATGAATTACCATTT
7321564 TGATATAC
131 TGATATAC
* * * * * *
7321572 AATTATGTATAAAAGTTATTGATCGATTTTGTTTAATGCATAATGGTGCATTTTTGTATCAGTAC
1 AATTATATATAAAAATTATCGATCGATTTTGTGTAATGCATAAGGGTGCATTTTCGTATCAGTAC
* ** * *
7321637 TATGTGTACTTTCGGTACTATG-TGTGC-ATCCATGGAATTCATATTGAGTTTGTGAATT
66 TATGTGCACTTTCGACACTA-GATGTGCAAT-CATGGAATTCATAATGAGTTTATGAATT
7321695 TCTATTTCTG
Statistics
Matches: 107, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
137 2 0.02
138 104 0.97
139 1 0.01
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.42
Consensus pattern (138 bp):
AATTATATATAAAAATTATCGATCGATTTTGTGTAATGCATAAGGGTGCATTTTCGTATCAGTAC
TATGTGCACTTTCGACACTAGATGTGCAATCATGGAATTCATAATGAGTTTATGAATTACCATTT
TGATATAC
Found at i:7327710 original size:2 final size:2
Alignment explanation
Indices: 7327664--7327692 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7327654 AGTTTGTCAA
7327664 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
7327693 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:7331782 original size:24 final size:25
Alignment explanation
Indices: 7331746--7331792 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
7331736 AGTGTTTTAT
*
7331746 GCTTCTGAAATTTCCATATTTTTCA
1 GCTTCTGAAATTTACATATTTTTCA
* *
7331771 GCTT-TGAGATTTACATTTTTTT
1 GCTTCTGAAATTTACATATTTTT
7331793 ATCGTTTGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.21, C:0.15, G:0.11, T:0.53
Consensus pattern (25 bp):
GCTTCTGAAATTTACATATTTTTCA
Found at i:7334057 original size:2 final size:2
Alignment explanation
Indices: 7334050--7334086 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
7334040 TCAATCTACA
7334050 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7334087 ATTTACAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7335145 original size:19 final size:19
Alignment explanation
Indices: 7335121--7335166 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
7335111 CCCTATTAAA
7335121 TCAGCAGCAAGAATGGACC
1 TCAGCAGCAAGAATGGACC
7335140 TCAGCAGCAAGAATGGACC
1 TCAGCAGCAAGAATGGACC
7335159 TCAGCAGC
1 TCAGCAGC
7335167 TCCAACCGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.35, C:0.28, G:0.26, T:0.11
Consensus pattern (19 bp):
TCAGCAGCAAGAATGGACC
Found at i:7335747 original size:7 final size:7
Alignment explanation
Indices: 7335735--7335915 Score: 362
Period size: 7 Copynumber: 25.9 Consensus size: 7
7335725 CGATAAGAAG
7335735 AGCGAAA
1 AGCGAAA
7335742 AGCGAAA
1 AGCGAAA
7335749 AGCGAAA
1 AGCGAAA
7335756 AGCGAAA
1 AGCGAAA
7335763 AGCGAAA
1 AGCGAAA
7335770 AGCGAAA
1 AGCGAAA
7335777 AGCGAAA
1 AGCGAAA
7335784 AGCGAAA
1 AGCGAAA
7335791 AGCGAAA
1 AGCGAAA
7335798 AGCGAAA
1 AGCGAAA
7335805 AGCGAAA
1 AGCGAAA
7335812 AGCGAAA
1 AGCGAAA
7335819 AGCGAAA
1 AGCGAAA
7335826 AGCGAAA
1 AGCGAAA
7335833 AGCGAAA
1 AGCGAAA
7335840 AGCGAAA
1 AGCGAAA
7335847 AGCGAAA
1 AGCGAAA
7335854 AGCGAAA
1 AGCGAAA
7335861 AGCGAAA
1 AGCGAAA
7335868 AGCGAAA
1 AGCGAAA
7335875 AGCGAAA
1 AGCGAAA
7335882 AGCGAAA
1 AGCGAAA
7335889 AGCGAAA
1 AGCGAAA
7335896 AGCGAAA
1 AGCGAAA
7335903 AGCGAAA
1 AGCGAAA
7335910 AGCGAA
1 AGCGAA
7335916 TTTGAAGTGA
Statistics
Matches: 174, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 174 1.00
ACGTcount: A:0.57, C:0.14, G:0.29, T:0.00
Consensus pattern (7 bp):
AGCGAAA
Found at i:7343476 original size:16 final size:17
Alignment explanation
Indices: 7343455--7343499 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 17
7343445 AACATTCCCA
7343455 GTAATCTTATTCCC-TG
1 GTAATCTTATTCCCATG
7343471 GTAATCTTACATTCCCATTG
1 GTAATCTT--ATTCCCA-TG
7343491 GTAATCTTA
1 GTAATCTTA
7343500 CATTCTGTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 8 0.32
18 7 0.28
20 10 0.40
ACGTcount: A:0.24, C:0.22, G:0.11, T:0.42
Consensus pattern (17 bp):
GTAATCTTATTCCCATG
Found at i:7345682 original size:37 final size:36
Alignment explanation
Indices: 7345589--7345691 Score: 163
Period size: 35 Copynumber: 2.9 Consensus size: 36
7345579 CAACTTTGAA
7345589 AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
1 AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
* *
7345625 -AAAATTGTTTTCAAAGTTTGGTAAATGTTTTTTTG
1 AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
*
7345660 AAAAATGGTTTTTCAAAGTTTGGTAGATGTTT
1 AAAAATGG-TTTTCAAAGTTTGGTAAATGTTT
7345692 GTTAAAAAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
35 33 0.54
36 6 0.10
37 22 0.36
ACGTcount: A:0.30, C:0.04, G:0.19, T:0.47
Consensus pattern (36 bp):
AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
Found at i:7350211 original size:21 final size:21
Alignment explanation
Indices: 7350187--7350247 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
7350177 CTTTGAAAAA
7350187 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
*
7350208 AAAT-G-TTTC----TTT-GA
1 AAATGGTTTTCAAAGTTTGGT
7350222 AAATGGTTTTCAAAGTTTGGT
1 AAATGGTTTTCAAAGTTTGGT
7350243 AAATG
1 AAATG
7350248 TTTCTTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 4 0.13
16 4 0.13
19 4 0.13
20 4 0.13
21 10 0.32
ACGTcount: A:0.31, C:0.05, G:0.21, T:0.43
Consensus pattern (21 bp):
AAATGGTTTTCAAAGTTTGGT
Found at i:7350293 original size:36 final size:36
Alignment explanation
Indices: 7350185--7350297 Score: 185
Period size: 35 Copynumber: 3.2 Consensus size: 36
7350175 AACTTTGAAA
7350185 AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
1 AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
7350221 -AAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
1 AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
* *
7350256 AAAAATGGTTTTTCAAAGTTTGGTAGATGTTT-GTTG
1 AAAAATGG-TTTTCAAAGTTTGGTAAATGTTTCTTTG
7350292 AAAAAT
1 AAAAAT
7350298 TGTAATTGGG
Statistics
Matches: 73, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
35 35 0.48
36 16 0.22
37 22 0.30
ACGTcount: A:0.32, C:0.04, G:0.20, T:0.43
Consensus pattern (36 bp):
AAAAATGGTTTTCAAAGTTTGGTAAATGTTTCTTTG
Found at i:7356954 original size:34 final size:34
Alignment explanation
Indices: 7356916--7356991 Score: 125
Period size: 34 Copynumber: 2.2 Consensus size: 34
7356906 ATTTCTTACA
*
7356916 TCAATTTAGTTAGGTGAAGATGTCATTACTTATT
1 TCAATTTAGTTAAGTGAAGATGTCATTACTTATT
*
7356950 TCAATTTAGTTAAGTGAAGATGTCATTGCTTATT
1 TCAATTTAGTTAAGTGAAGATGTCATTACTTATT
*
7356984 TTAATTTA
1 TCAATTTA
7356992 ATGGAGTACG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 39 1.00
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.46
Consensus pattern (34 bp):
TCAATTTAGTTAAGTGAAGATGTCATTACTTATT
Found at i:7363598 original size:205 final size:203
Alignment explanation
Indices: 7363116--7364345 Score: 829
Period size: 205 Copynumber: 5.9 Consensus size: 203
7363106 GTAAGTTCTA
* * * * * * *
7363116 AAGAGTCTTCATCGCTGAACACACCAAATGAAGT-CATCGTTTGCAGTCGTCAATCATTATG-TC
1 AAGAGTCTTCATCACTGAACACACCAGATGAA-TCCGTTGTTTGCAATCGTCAATCTTTGTGTTC
* * * * * * *
7363179 ATAAGGTGTCTTGTGCCTAGATATGTTAAAGGAAAGATTCTCAGGCTTCCAAACAATGCCTATTA
65 -TGAGGTGTCTTGTGCCTAGAGATGTGAACGAAAAGATTCTCAGGCTTCCAAATATTGCCTATTA
* * * * * * *
7363244 GCATCCACCAACATGCGTTGTATGGAAGCCCAGAATCTTTACGTTCACATCCAT-AGTACT-AAG
129 GCAACCACCAACAAGCATTGTTTGAAAGCCAAAAATCTTTACGTTCACATCCATCA-TA-TGAAG
* *
7363307 TCGAAGTGGGTTCTG
192 TCG-A-T-GCTTTTG
* * * * * *
7363322 AAGAGTCTTTATCATTGAACACACCAGATGAAGCCGTTGTTTGCAATCAT-TA-CTCTGTGTTCT
1 AAGAGTCTTCATCACTGAACACACCAGATGAATCCGTTGTTTGCAATCGTCAATCTTTGTGTTCT
* * * * * * *
7363385 GAGGTGTCTTATGCCTAGAGACGTGAATGAAAAGATTTTCAAGCTTCCAAATATTGCTTATTAGG
66 GAGGTGTCTTGTGCCTAGAGATGTGAACGAAAAGATTCTCAGGCTTCCAAATATTGCCTATTAGC
**
7363450 AATAACCAACAAGCATTGTTTGAAAGTCCAAAAATCTTTACGTTCACATCCATCATATGAAGTCG
131 AACCACCAACAAGCATTGTTTGAAAG-CCAAAAATCTTTACGTTCACATCCATCATATGAAGTCG
7363515 ATGCTTTTG
195 ATGCTTTTG
* * * *
7363524 AAGAGATCTTCATCACTGAACACACGAGATGAATCCGTTGTTAGCAATCGTCAATCTTTATGTTT
1 AAGAG-TCTTCATCACTGAACACACCAGATGAATCCGTTGTTTGCAATCGTCAATCTTTGTGTTC
* * *
7363589 TGAGGTGTCTTGTGCCTAGAGATGTGAACGAAAAGATTCACAGGCTTCCAAAAAAATT-CCTACT
65 TGAGGTGTCTTGTGCCTAGAGATGTGAACGAAAAGATTCTCAGGCTTCC--AAATATTGCCTATT
** * * * * * * *
7363653 AGCAACCACCAACAAGGGTTGTTT-ATAAGCCCAAAATCATTACATTCAAATACATCGTAAGAAG
128 AGCAACCACCAACAAGCATTGTTTGA-AAGCCAAAAATCTTTACGTTCACATCCATCATATGAA-
* *
7363717 CCGTTGCTTTTGAAGTGGGTTCTG
191 --G-T-C----G-A-T-GCTTTTG
* * * * *
7363741 AAGAGACTTCATCACTGAACACACTAGATGAAGT-CGTTGTTTGCAATCATTATTCTTTGTGTTC
1 AAGAGTCTTCATCACTGAACACACCAGATGAA-TCCGTTGTTTGCAATCGTCAATCTTTGTGTTC
* * * * * * * * * *
7363805 TAAGGTGTCTTGTGCCTCGAGATGCGAACAAAAATATTCTCAGGCTTTCGATTAGTGTCTATTAG
65 TGAGGTGTCTTGTGCCTAGAGATGTGAACGAAAAGATTCTCAGGCTTCCAAATATTGCCTATTAG
* * * ** * *
7363870 CAACCACCAAAAAGCATTATTTGAGAGCCCAAAAATCCCTACGTTCACATCCATCTTGTGAAG-C
130 CAACCACCAACAAGCATTGTTTGAAAG-CCAAAAATCTTTACGTTCACATCCATCATATGAAGTC
*
7363934 TGTTGCTTTTG
194 -GATGCTTTTG
* * * * * * * *
7363945 AAGTGGTCTTCATCGCTGAACACACTAGATGAACCCATTGTTTGTAATCGTCAGTCTTTGTGTTT
1 AAG-AGTCTTCATCACTGAACACACCAGATGAATCCGTTGTTTGCAATCGTCAATCTTTGTGTTC
* **
7364010 TGAGGTGTCTTGTGCCTAGAGATGTGAAC-AGAAAGATTC-CTAGGCTTCCAAACAACGCCTATT
65 TGAGGTGTCTTGTGCCTAGAGATGTGAACGA-AAAGATTCTC-AGGCTTCCAAATATTGCCTATT
* ** * ** ** *
7364073 AGCAACCACCAACAGGGGTTGTTT-AGAAGCCCAAAAATC-TTACGTTCAGATTTATTGTACGAA
128 AGCAACCACCAACAAGCATTGTTTGA-AAG-CCAAAAATCTTTACGTTCACATCCATCATATGAA
* *
7364136 GTCGTTTCCTTTGAAGTGGGTTCTG
191 ---G--T-C---G-A-T-GCTTTTG
* * * * * * ** * **
7364161 AAGAGTCTTCATCCCTGAACATACTAGATGAAGCTGTTGTTTGTAATTATCAGTCTTTGCATTCT
1 AAGAGTCTTCATCACTGAACACACCAGATGAATCCGTTGTTTGCAATCGTCAATCTTTGTGTTCT
* * * * *
7364226 GAGGTGTCTTGTGCCT-GAAGGTATGAATGGAAAAGGATTCTCAGGCTTCCAAAGACCT-CCTAT
66 GAGGTGTCTTGTGCCTAG-AGATGTGAA-CGAAAA-GATTCTCAGGCTTCCAAATA-TTGCCTAT
*
7364289 TAGCAACCACCAAC-AGAAGTTGTTTGAAAGCCCAAAAATCTTTACGTTCACATCCAT
127 TAGCAACCACCAACAAGCA-TTGTTTGAAAG-CCAAAAATCTTTACGTTCACATCCAT
7364346 TGTACAAGAC
Statistics
Matches: 802, Mismatches: 169, Indels: 94
0.75 0.16 0.09
Matches are distributed among these distances:
202 10 0.01
203 40 0.05
204 106 0.13
205 243 0.30
206 67 0.08
207 9 0.01
208 1 0.00
209 1 0.00
210 2 0.00
211 1 0.00
213 3 0.00
214 5 0.01
215 102 0.13
216 130 0.16
217 67 0.08
218 15 0.02
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (203 bp):
AAGAGTCTTCATCACTGAACACACCAGATGAATCCGTTGTTTGCAATCGTCAATCTTTGTGTTCT
GAGGTGTCTTGTGCCTAGAGATGTGAACGAAAAGATTCTCAGGCTTCCAAATATTGCCTATTAGC
AACCACCAACAAGCATTGTTTGAAAGCCAAAAATCTTTACGTTCACATCCATCATATGAAGTCGA
TGCTTTTG
Found at i:7363941 original size:216 final size:213
Alignment explanation
Indices: 7363522--7364338 Score: 686
Period size: 216 Copynumber: 3.8 Consensus size: 213
7363512 TCGATGCTTT
* * * * *
7363522 TGAAGAGATCTTCATCACTGAACACACGAGATGAA-TCCGTTGTTAGCAATCGTCAATCTTTATG
1 TGAAGAGA-CTTCATCACTGAACACACTAGATGAAGT-CGTTGTTTGCAATCATCAGTCTTTGTG
* *
7363586 TTTTGAGGTGTCTTGTGCCTAGAGATGTGAACGAAAAGATTCACAGGCTTCCAAAAAAAT-TCCT
64 TTCTGAGGTGTCTTGTGCCTAGAGATGTGAACAAAAAGATTC-CAGGCTTCC-AAAAAATGT-CT
* * * * * **
7363650 ACTAGCAACCACCAACAAGGGTTGTTTATAAGCCC-AAAATCATTACATTCAAATACATCGTAAG
126 ATTAGCAACCACCAACAAGGGTTGTTTA-GAGCCCAAAAATCCTTACGTTCAAAT-CATCTTGTG
*
7363714 AAGCCGTTGCTTTTGAAGTGGGTTC
189 AAGCTGTTGCTTTTGAAGTGGGTTC
* *
7363739 TGAAGAGACTTCATCACTGAACACACTAGATGAAGTCGTTGTTTGCAATCATTATTCTTTGTGTT
1 TGAAGAGACTTCATCACTGAACACACTAGATGAAGTCGTTGTTTGCAATCATCAGTCTTTGTGTT
* * * * * * ** *
7363804 CTAAGGTGTCTTGTGCCTCGAGATGCGAACAAAAATATTCTCAGGCTTTCGATTAGTGTCTATTA
66 CTGAGGTGTCTTGTGCCTAGAGATGTGAACAAAAAGATTC-CAGGCTTCCAAAAAATGTCTATTA
* ** * * *
7363869 GCAACCACCAAAAAGCATTATTTGAGAGCCCAAAAATCCCTACGTTCACATCCATCTTGTGAAGC
130 GCAACCACCAACAAGGGTTGTTT-AGAGCCCAAAAATCCTTACGTTCAAAT-CATCTTGTGAAGC
7363934 TGTTGCTTTTGAAGT-GG---
193 TGTTGCTTTTGAAGTGGGTTC
* ** * * *
7363951 T-------CTTCATCGCTGAACACACTAGATGAACCCATTGTTTGTAATCGTCAGTCTTTGTGTT
1 TGAAGAGACTTCATCACTGAACACACTAGATGAAGTCGTTGTTTGCAATCATCAGTCTTTGTGTT
* * * * *
7364009 TTGAGGTGTCTTGTGCCTAGAGATGTGAACAGAAAGATTCCTAGGCTTCCAAACAACGCCTATTA
66 CTGAGGTGTCTTGTGCCTAGAGATGTGAACAAAAAGATTCC-AGGCTTCCAAAAAATGTCTATTA
* * * *
7364074 GCAACCACCAACAGGGGTTGTTTAGAAGCCCAAAAAT-CTTACGTTCAGAT-TTATTGTACGAAG
130 GCAACCACCAACAAGGGTTGTTTAG-AGCCCAAAAATCCTTACGTTCAAATCATCTTGT--GAAG
* *
7364137 -TCGTTTCCTTTGAAGTGGGTTC
192 CT-GTTGCTTTTGAAGTGGGTTC
* * * * * **
7364159 TGAAGAGTCTTCATCCCTGAACATACTAGATGAAG-CTGTTGTTTGTAATTATCAGTCTTTGCAT
1 TGAAGAGACTTCATCACTGAACACACTAGATGAAGTC-GTTGTTTGCAATCATCAGTCTTTGTGT
* * * * ** *
7364223 TCTGAGGTGTCTTGTGCCT-GAAGGTATGAATGGAAAAGGATTCTCAGGCTTCCAAAGACCT-CC
65 TCTGAGGTGTCTTGTGCCTAG-AGATGTGAA--CAAAAAGATTC-CAGGCTTCCAAA-AAATGTC
* * *
7364286 TATTAGCAACCACCAAC-AGAAGTTGTTTGAAAGCCCAAAAATCTTTACGTTCA
125 TATTAGCAACCACCAACAAG-GGTTGTTT-AGAGCCCAAAAATCCTTACGTTCA
7364339 CATCCATTGT
Statistics
Matches: 484, Mismatches: 87, Indels: 57
0.77 0.14 0.09
Matches are distributed among these distances:
202 5 0.01
203 1 0.00
204 30 0.06
205 130 0.27
208 1 0.00
212 1 0.00
214 2 0.00
215 105 0.22
216 133 0.27
217 65 0.13
218 11 0.02
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (213 bp):
TGAAGAGACTTCATCACTGAACACACTAGATGAAGTCGTTGTTTGCAATCATCAGTCTTTGTGTT
CTGAGGTGTCTTGTGCCTAGAGATGTGAACAAAAAGATTCCAGGCTTCCAAAAAATGTCTATTAG
CAACCACCAACAAGGGTTGTTTAGAGCCCAAAAATCCTTACGTTCAAATCATCTTGTGAAGCTGT
TGCTTTTGAAGTGGGTTC
Found at i:7363946 original size:421 final size:418
Alignment explanation
Indices: 7362736--7364345 Score: 1246
Period size: 420 Copynumber: 3.8 Consensus size: 418
7362726 AGCCTAAAGC
* * * *
7362736 CTTTATTGTTTTAAGGTGTCTTGTGCCCAGAGATGTGAACGGAAAGATTCCCTA-GCTTCCAAAC
1 CTTTA-TGTTTTGAGGTGTCTTGTGCCTAGAGATGTGAACAGAAAGATT-CCTAGGCTTCCAAAA
* * * *
7362800 AACGCCTATTAGCAACCACCAAC-AGGCGTTGTTTGGAAGCCCAAAAATCTTTA-AGTTCACATC
64 AACGCCTACTAGCAACCACCAACAAGG-GTTGTTTAGAAGCCCAAAAATC-TTACA-TTCAAATA
* * ** * * * * * * ** * *
7362863 CATTGTACGAAGTTGTTGCTTTTGAAAT-GGTTTTGAGGAGTATTCCTCTTTAAACACACCAGAT
126 CATCGTAAGAAGCCGTTGCCTTTGAAGTGGGTTCTGAAGAGTCTTCATCACTGAACACACTAGAT
* * * * * * * *
7362927 GAAGCCGTTGTCTGCAATCGTCAGTC--TGTGTTTTGAGGTGTCTTGTGCCTAGAAATGAGAACG
191 GAAG-CGTTGTTTGCAATCATTA-TCTTTGTGTTCTGAGGTGTCTTGTGCCTAGAGACGCGAACA
* ** * * ** * * *
7362990 GAAAGATTCTCTGGCTTCCAAACAACGCCTAGC-TATTAGCAACCACCAGCAGGCATTGTTTGGA
254 AAAAGATTCTCAAGCTTCCAAA-TA-G--T-GCTTATTAGCAACAACCAAAAAGCATTATTTGAA
* ** * * * * *
7363054 AGTCCAAAAATCTTTACGTTTACATCCATCGTACGAAGACGTTGCTTTTAAAGTAAGTTCTAAAG
314 AGCCCAAAAATCCCTACGTTCACATCCATCATATGAAGTCGATGCTTTT---G-AAG------AG
* * * ** * * *
7363119 AGTCTTCATCGCTGAACACACCAAATGAAGTCATCGTTTGCAGTCGTCAAT
369 A-TCTTCATCACTGAACACACGAGATGAACCCATTGTTAGCAATCGTCAAT
* ** * * * *
7363170 CATTATGTCATAAGGTGTCTTGTGCCTAGATATGTTAA-AGGAAAGATT-CTCAGGCTTCCAAAC
1 CTTTATGTTTTGAGGTGTCTTGTGCCTAGAGATGTGAACA-GAAAGATTCCT-AGGCTTCCAAAA
* * * * * * * * * * *
7363233 AATGCCTATTAGCATCCACCAACATGCGTTGTATGGAAGCCC-AGAATCTTTACGTTCACATCCA
64 AACGCCTACTAGCAACCACCAACAAGGGTTGTTTAGAAGCCCAAAAATC-TTACATTCAAATACA
* ** * * *
7363297 TAGTACTAA---G-T--C---GAAGTGGGTTCTGAAGAGTCTTTATCATTGAACACACCAGATGA
128 TCGTAAGAAGCCGTTGCCTTTGAAGTGGGTTCTGAAGAGTCTTCATCACTGAACACACTAGATGA
* * * **
7363353 AGCCGTTGTTTGCAATCATTA-CTCTGTGTTCTGAGGTGTCTTATGCCTAGAGACGTGAATGAAA
193 AG-CGTTGTTTGCAATCATTATCTTTGTGTTCTGAGGTGTCTTGTGCCTAGAGACGCGAACAAAA
* * * * * * *
7363417 AGATTTTCAAGCTTCCAAATATTGCTTATTAGGAATAACCAACAAGCATTGTTTGAAAGTCCAAA
257 AGATTCTCAAGCTTCCAAATAGTGCTTATTAGCAACAACCAAAAAGCATTATTTGAAAGCCCAAA
**
7363482 AATCTTTACGTTCACATCCATCATATGAAGTCGATGCTTTTGAAGAGATCTTCATCACTGAACAC
322 AATCCCTACGTTCACATCCATCATATGAAGTCGATGCTTTTGAAGAGATCTTCATCACTGAACAC
* *
7363547 ACGAGATGAATCCGTTGTTAGCAATCGTCAAT
387 ACGAGATGAACCCATTGTTAGCAATCGTCAAT
7363579 CTTTATGTTTTGAGGTGTCTTGTGCCTAGAGATGTGAAC-GAAAAGATTCAC-AGGCTTCCAAAA
1 CTTTATGTTTTGAGGTGTCTTGTGCCTAGAGATGTGAACAG-AAAGATTC-CTAGGCTTCC-AAA
** *
7363642 AAATTCCTACTAGCAACCACCAACAAGGGTTGTTTATAAGCCC-AAAATCATTACATTCAAATAC
63 AAACGCCTACTAGCAACCACCAACAAGGGTTGTTTAGAAGCCCAAAAATC-TTACATTCAAATAC
* *
7363706 ATCGTAAGAAGCCGTTGCTTTTGAAGTGGGTTCTGAAGAGACTTCATCACTGAACACACTAGATG
127 ATCGTAAGAAGCCGTTGCCTTTGAAGTGGGTTCTGAAGAGTCTTCATCACTGAACACACTAGATG
* * *
7363771 AAGTCGTTGTTTGCAATCATTATTCTTTGTGTTCTAAGGTGTCTTGTGCCTCGAGATGCGAACAA
192 AAG-CGTTGTTTGCAATCATTA-TCTTTGTGTTCTGAGGTGTCTTGTGCCTAGAGACGCGAACAA
* * * * * * *
7363836 AAATATTCTCAGGCTTTCGATTAGTG-TCTATTAGCAACCACCAAAAAGCATTATTTGAGAGCCC
255 AAAGATTCTCAAGCTTCCAAATAGTGCT-TATTAGCAACAACCAAAAAGCATTATTTGAAAGCCC
* * * * * *
7363900 AAAAATCCCTACGTTCACATCCATCTTGTGAAG-CTGTTGCTTTTGAAGTGGTCTTCATCGCTGA
319 AAAAATCCCTACGTTCACATCCATCATATGAAGTC-GATGCTTTTGAAGAGATCTTCATCACTGA
* * * *
7363964 ACACACTAGATGAACCCATTGTTTGTAATCGTCAGT
383 ACACACGAGATGAACCCATTGTTAGCAATCGTCAAT
* *
7364000 CTTTGTGTTTTGAGGTGTCTTGTGCCTAGAGATGTGAACAGAAAGATTCCTAGGCTTCCAAACAA
1 CTTTATGTTTTGAGGTGTCTTGTGCCTAGAGATGTGAACAGAAAGATTCCTAGGCTTCCAAAAAA
* * * * ** *
7364065 CGCCTATTAGCAACCACCAACAGGGGTTGTTTAGAAGCCCAAAAATCTTACGTTCAGATTTATTG
66 CGCCTACTAGCAACCACCAACAAGGGTTGTTTAGAAGCCCAAAAATCTTACATTCAAATACATCG
* * * * *
7364130 TACGAAGTCGTTTCCTTTGAAGTGGGTTCTGAAGAGTCTTCATCCCTGAACATACTAGATGAAGC
131 TAAGAAGCCGTTGCCTTTGAAGTGGGTTCTGAAGAGTCTTCATCACTGAACACACTAGATGAAGC
* * * ** * * *
7364195 TGTTGTTTGTAATTATCAGTCTTTGCATTCTGAGGTGTCTTGTGCCT-GA-AGGTATGAATGGAA
196 -GTTGTTTGCAATCATTA-TCTTTGTGTTCTGAGGTGTCTTGTGCCTAGAGACG--CGAA--CAA
* * * * * * *
7364258 AAGGATTCTCAGGCTTCCAAAGACCT-CCTATTAGCAACCACCAACAGAAG--TTGTTTGAAAGC
255 AAAGATTCTCAAGCTTCCAAATA-GTGCTTATTAGCAACAACCAA-A-AAGCATTATTTGAAAGC
**
7364320 CCAAAAATCTTTACGTTCACATCCAT
317 CCAAAAATCCCTACGTTCACATCCAT
7364346 TGTACAAGAC
Statistics
Matches: 971, Mismatches: 166, Indels: 90
0.79 0.14 0.07
Matches are distributed among these distances:
408 1 0.00
409 87 0.09
410 63 0.06
411 1 0.00
413 1 0.00
414 1 0.00
416 3 0.00
417 1 0.00
418 2 0.00
419 65 0.07
420 225 0.23
421 225 0.23
422 71 0.07
423 7 0.01
424 101 0.10
428 1 0.00
429 1 0.00
431 2 0.00
432 27 0.03
433 81 0.08
434 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (418 bp):
CTTTATGTTTTGAGGTGTCTTGTGCCTAGAGATGTGAACAGAAAGATTCCTAGGCTTCCAAAAAA
CGCCTACTAGCAACCACCAACAAGGGTTGTTTAGAAGCCCAAAAATCTTACATTCAAATACATCG
TAAGAAGCCGTTGCCTTTGAAGTGGGTTCTGAAGAGTCTTCATCACTGAACACACTAGATGAAGC
GTTGTTTGCAATCATTATCTTTGTGTTCTGAGGTGTCTTGTGCCTAGAGACGCGAACAAAAAGAT
TCTCAAGCTTCCAAATAGTGCTTATTAGCAACAACCAAAAAGCATTATTTGAAAGCCCAAAAATC
CCTACGTTCACATCCATCATATGAAGTCGATGCTTTTGAAGAGATCTTCATCACTGAACACACGA
GATGAACCCATTGTTAGCAATCGTCAAT
Found at i:7364151 original size:625 final size:624
Alignment explanation
Indices: 7362742--7364151 Score: 1405
Period size: 625 Copynumber: 2.2 Consensus size: 624
7362732 AAGCCTTTAT
* * *
7362742 TGTTTTAAGGTGTCTTGTGCCCAGAGATGTGAACGGAAAGATTCCCTAGCTTCCAAACAACGCCT
1 TGTTTTGAGGTGTCTTGTGCCTAGAGATGTGAACAGAAAGATT-CCTAGCTTCCAAACAACGCCT
*
7362807 ATTAGCAACCACCAACAGGCGTTGTTTGGAAGCCCAAAAATCTTTAAGTTCACATCCATTGTACG
65 ATTAGCAACCACCAACAGGCGTTGTTT-GAAGCCCAAAAATCTTTACGTTCACATCCATTGTACG
* * **
7362872 AAGTTGTTGCTTTTGAAATGGTTTTGAGGAGTATTCCTCTTTAAACACACCAGATGAAGCCGTTG
129 AAGTCGTTGCTTTTG-AA-------GAGGAGTATTCATCACTAAACACACCAGATGAAGCCGTTG
* * * * *
7362937 TCTGCAATCGTCAGTCTGTGTTTTGAGGTGTCTTGTGCCTAGAAATGAGAACGGAAAGATTCTCT
186 TCTGCAATCGTCAATCTATGTTTTGAGGTGTCTTGTGCCTAGAAATGAGAACGAAAAGATTCACA
* * * *
7363002 GGCTTCCAAACAACGCCTAGCTATTAGCAACCACCAGCAGGCATTGTTTGGAAGTCCAAAAATCT
251 GGCTTCCAAAAAACGCCTAGC--TTAGCAACCACCAACAGGCATTGTTTAGAAGTCCAAAAATCA
* * * * * * *
7363067 TTACGTTTACATCCATCGTACGAAGACGTTGCTTTTAAAGTAAGTTCTAAAGAGTCTTCATCGCT
314 TTACATTCAAATACATCGTAAGAAGACGTTGCTTTTAAAGTAAGTTCTAAAGAGACTTCATCACT
* *
7363132 GAACACACCAAATGAAGTCATCGTTTGCAGTCGTCAATCATTATGTCATAAGGTGTCTTGTGCCT
379 GAACACACCAAATGAAGTCATCGTTTGCAATCATCAATCATTATGTCATAAGGTGTCTTGTGCCT
* ** * * * * *
7363197 AGATATGTTAAAGGAAAGATTCTCAGGCTTCCAAACAATGCCTATTAGCATCCACCAACATGCGT
444 AGAGATGCGAAAGAAAAGATTCTCAGGCTTCCAAACAATGCCTATTAGCAACCACCAAAAAGCAT
* * ** *
7363262 TGTATGGAAGCCCAGAATCTTTACGTTCACATCCATAGTACTAAGTCGAAGTGGGTTCTGAAGAG
509 TATATGGAAGCCCAAAATCCCTACGTTCACATCCA-AGTACTAAGTCGAAGTGGCTTCTGAAGAG
* * * * *
7363327 TCTTTATCATTGAACACACCAGATGAAGCCGTTGTTTGCAATCATTACTCTG
573 TCTTCATCACTGAACACACCAGATGAACCCATTGTTTGCAATCATCACTCTG
* * * * * * * ** *
7363379 TGTTCTGAGGTGTCTTATGCCTAGAGACGTGAA-TGAAAAGATTTTCAAGCTTCCAAATATTGCT
1 TGTTTTGAGGTGTCTTGTGCCTAGAGATGTGAACAG-AAAGA-TTCCTAGCTTCCAAACAACGCC
* ** * * * ** *
7363443 TATTAGGAATAACCAACAAGCATTGTTTGAAAGTCCAAAAATCTTTACGTTCACATCCATCATAT
64 TATTAGCAACCACCAACAGGCGTTGTTTG-AAGCCCAAAAATCTTTACGTTCACATCCATTGTAC
* * * * *
7363508 GAAGTCGATGCTTTTGAAGA-GA-TCTTCATCACTGAACACACGAGATGAATCCGTTGT-TAGCA
128 GAAGTCGTTGCTTTTGAAGAGGAGTATTCATCACTAAACACACCAGATGAAGCCGTTGTCT-GCA
* *
7363570 ATCGTCAATCTTTATGTTTTGAGGTGTCTTGTGCCTAGAGATGTGAACGAAAAGATTCACAGGCT
192 ATCGTCAATC--TATGTTTTGAGGTGTCTTGTGCCTAGAAATGAGAACGAAAAGATTCACAGGCT
** * * *
7363635 TCCAAAAAAATTCCTA-C-TAGCAACCACCAACAAGG-GTTGTTTATAAG-CCCAAAATCATTAC
255 TCC-AAAAAACGCCTAGCTTAGCAACCACCAAC-AGGCATTGTTTAGAAGTCCAAAAATCATTAC
* * ** *
7363696 ATTCAAATACATCGTAAGAAGCCGTTGCTTTTGAAGTGGGTTCTGAAGAGACTTCATCACTGAAC
318 ATTCAAATACATCGTAAGAAGACGTTGCTTTTAAAGTAAGTTCTAAAGAGACTTCATCACTGAAC
* * * * * * * * *
7363761 ACACTAGATGAAGTCGTTGTTTGCAATCATTATTCTTTGTGTTC-TAAGGTGTCTTGTGCCTCGA
383 ACACCAAATGAAGTCATCGTTTGCAATCATCAATCATTATG-TCATAAGGTGTCTTGTGCCTAGA
* * * ** * *
7363825 GATGCGAACA-AAAATATTCTCAGGCTTTCGATTAGTGTCTATTAGCAACCACCAAAAAGCATTA
447 GATGCGAA-AGAAAAGATTCTCAGGCTTCCAAACAATGCCTATTAGCAACCACCAAAAAGCATTA
* * *
7363889 T-TTGAGAGCCCAAAAATCCCTACGTTCACATCC-A-T-CT-TGT-GAAGCTGTTGCTTTTGAAG
511 TATGGA-AGCCC-AAAATCCCTACGTTCACATCCAAGTACTAAGTCGAAG-TG--GCTTCTGAAG
* * * * * *
7363948 TGGTCTTCATCGCTGAACACACTAGATGAACCCATTGTTTGTAATCGTCAGTCTTTG
571 -AGTCTTCATCACTGAACACACCAGATGAACCCATTGTTTGCAATCATCA--CTCTG
7364005 TGTTTTGAGGTGTCTTGTGCCTAGAGATGTGAACAGAAAGATTCCTAGGCTTCCAAACAACGCCT
1 TGTTTTGAGGTGTCTTGTGCCTAGAGATGTGAACAGAAAGATTCCTA-GCTTCCAAACAACGCCT
* * **
7364070 ATTAGCAACCACCAACAGGGGTTGTTTAGAAGCCCAAAAATC-TTACGTTCAGATTTATTGTACG
65 ATTAGCAACCACCAACAGGCGTTGTTT-GAAGCCCAAAAATCTTTACGTTCACATCCATTGTACG
* *
7364134 AAGTCGTTTCCTTTGAAG
129 AAGTCGTTGCTTTTGAAG
7364152 TGGGTTCTGA
Statistics
Matches: 622, Mismatches: 130, Indels: 54
0.77 0.16 0.07
Matches are distributed among these distances:
620 4 0.01
621 4 0.01
622 2 0.00
623 9 0.01
624 43 0.07
625 202 0.32
626 129 0.21
627 45 0.07
628 2 0.00
629 53 0.09
630 9 0.01
636 4 0.01
637 114 0.18
638 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (624 bp):
TGTTTTGAGGTGTCTTGTGCCTAGAGATGTGAACAGAAAGATTCCTAGCTTCCAAACAACGCCTA
TTAGCAACCACCAACAGGCGTTGTTTGAAGCCCAAAAATCTTTACGTTCACATCCATTGTACGAA
GTCGTTGCTTTTGAAGAGGAGTATTCATCACTAAACACACCAGATGAAGCCGTTGTCTGCAATCG
TCAATCTATGTTTTGAGGTGTCTTGTGCCTAGAAATGAGAACGAAAAGATTCACAGGCTTCCAAA
AAACGCCTAGCTTAGCAACCACCAACAGGCATTGTTTAGAAGTCCAAAAATCATTACATTCAAAT
ACATCGTAAGAAGACGTTGCTTTTAAAGTAAGTTCTAAAGAGACTTCATCACTGAACACACCAAA
TGAAGTCATCGTTTGCAATCATCAATCATTATGTCATAAGGTGTCTTGTGCCTAGAGATGCGAAA
GAAAAGATTCTCAGGCTTCCAAACAATGCCTATTAGCAACCACCAAAAAGCATTATATGGAAGCC
CAAAATCCCTACGTTCACATCCAAGTACTAAGTCGAAGTGGCTTCTGAAGAGTCTTCATCACTGA
ACACACCAGATGAACCCATTGTTTGCAATCATCACTCTG
Found at i:7364841 original size:205 final size:210
Alignment explanation
Indices: 7364535--7365074 Score: 553
Period size: 205 Copynumber: 2.6 Consensus size: 210
7364525 TGGGTTTAGA
* * * **
7364535 AGAGTCTTCATCGTTGAATAGACCAGATGAAGTTGTTGTTTGCAATCATCAGTCTTTGTGTTCTG
1 AGAGTCTTCATCGCTGAACACACCAGATGAAGCCGTTGTTTGCAATCATCAGTCTTTGTGTTCTG
* * * * *
7364600 AGGTGTCATGTGCCTATAGATGTGAACGATAAGATTCTCACGCTTTCAAA-AATAACCTATTAGC
66 AGGTGTCTTGTGCCTAAAGATGTGAAGGA-AAGATTCTCAAGCTTCCAAACAA-AACCTATTAGC
* *** ** * * *
7364664 -AACGACCAACAAGCT-TTGTTT-GAAAGCTGGAAAATCTTTACGTTCCCATCCATCTTACGAAG
129 AAACCACCAAC-AG-TATTGTTTAG-AAGCCCAAAAATCTTTACGTTCAAATCAATCGTACGAAA
*
7364726 CCTTTGC-TTTTG-A-A-G-T
191 CCGTT-CTTTTTGAAGAGGTT
* * * * *
7364742 -G-GTCTTCATCACTGAACACACCAGATGAAGCCGTTGCTTGCAATCATCAGTCTTTATGTTTTA
1 AGAGTCTTCATCGCTGAACACACCAGATGAAGCCGTTGTTTGCAATCATCAGTCTTTGTGTTCTG
* **
7364805 AGGTGTCTTGTGCCTAAAGATGTGAATGGAAAGATTCCCAAGCTTCCAAACAACGCCTATTAGCA
66 AGGTGTCTTGTGCCTAAAGATGTGAA-GGAAAGATTCTCAAGCTTCCAAACAAAACCTATTAGCA
7364870 AACCACCAACAGTAGTTGTTTAGAAGCCCAAAAATCTTTACGTTCAAATCAATCGTACGAAACCG
130 AACCACCAACAGTA-TTGTTTAGAAGCCCAAAAATCTTTACGTTCAAATCAATCGTACGAAACCG
7364935 TTCTTTTTGAAGTAGGTTTT
194 TTCTTTTTGAAG-AGG--TT
* * * *
7364955 GAAGAGTCTTCATTGCTGAACACAACAGAAGAAGCCGTTGTTTGCAATCGTCAGTCTTTGTGTTC
1 --AGAGTCTTCATCGCTGAACACACCAGATGAAGCCGTTGTTTGCAATCATCAGTCTTTGTGTTC
* * **
7365020 TGAGGTGTCTTGTGCCTAGATATGTGAACGGAAAGATTCTCTGGCTTCCAAACAA
64 TGAGGTGTCTTGTGCCTAAAGATGTGAA-GGAAAGATTCTCAAGCTTCCAAACAA
7365075 CGCCTGTTGA
Statistics
Matches: 272, Mismatches: 43, Indels: 26
0.80 0.13 0.08
Matches are distributed among these distances:
204 1 0.00
205 105 0.39
206 60 0.22
207 2 0.01
209 1 0.00
210 1 0.00
213 1 0.00
216 1 0.00
217 100 0.37
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (210 bp):
AGAGTCTTCATCGCTGAACACACCAGATGAAGCCGTTGTTTGCAATCATCAGTCTTTGTGTTCTG
AGGTGTCTTGTGCCTAAAGATGTGAAGGAAAGATTCTCAAGCTTCCAAACAAAACCTATTAGCAA
ACCACCAACAGTATTGTTTAGAAGCCCAAAAATCTTTACGTTCAAATCAATCGTACGAAACCGTT
CTTTTTGAAGAGGTT
Found at i:7367093 original size:41 final size:42
Alignment explanation
Indices: 7367036--7367135 Score: 141
Period size: 41 Copynumber: 2.4 Consensus size: 42
7367026 GCGTTTGTCG
* **
7367036 TTCACAAACGCAGCTAAAGGTTATG-TTTTTAGCGGTGTTTT
1 TTCACAAACGCAGCTAAAGGTTATGATATTTAGCGGCATTTT
*
7367077 TTCACAAACGCTGCTAAAGGTTATGATATTTAGCGGCATTTT
1 TTCACAAACGCAGCTAAAGGTTATGATATTTAGCGGCATTTT
*
7367119 TTC-CAAACGCCGCTAAA
1 TTCACAAACGCAGCTAAA
7367136 TATTCTGACA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
41 37 0.70
42 16 0.30
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (42 bp):
TTCACAAACGCAGCTAAAGGTTATGATATTTAGCGGCATTTT
Found at i:7372747 original size:191 final size:191
Alignment explanation
Indices: 7372423--7372804 Score: 755
Period size: 191 Copynumber: 2.0 Consensus size: 191
7372413 ATTTGTGCAG
7372423 ACCTGTTACATCAAATGAAATTAGTCCACGTATGGCCCAGCCAAGATCCAAAACGCGTTCCATCC
1 ACCTGTTACATCAAATGAAATTAGTCCACGTATGGCCCAGCCAAGATCCAAAACGCGTTCCATCC
*
7372488 GCATCAGCTAGGGTTTTCAGAACCCTAGCGCCTCATGTCATGTTCTTGATCGAGGTTCCCTCCCT
66 GCATCAGCTAGGGTTTTCAGAACCCTAGCGCCTCATGTCATGTTCTTGATCAAGGTTCCCTCCCT
7372553 TGGCACGCCACTTCTCACGCAACGACCCCCACTCTTCTCGGCCTCCAACCGACGTGAATAT
131 TGGCACGCCACTTCTCACGCAACGACCCCCACTCTTCTCGGCCTCCAACCGACGTGAATAT
7372614 ACCTGTTACATCAAATGAAATTAGTCCACGTATGGCCCAGCCAAGATCCAAAACGCGTTCCATCC
1 ACCTGTTACATCAAATGAAATTAGTCCACGTATGGCCCAGCCAAGATCCAAAACGCGTTCCATCC
7372679 GCATCAGCTAGGGTTTTCAGAACCCTAGCGCCTCATGTCATGTTCTTGATCAAGGTTCCCTCCCT
66 GCATCAGCTAGGGTTTTCAGAACCCTAGCGCCTCATGTCATGTTCTTGATCAAGGTTCCCTCCCT
7372744 TGGCACGCCACTTCTCACGCAACGACCCCCACTCTTCTCGGCCTCCAACCGACGTGAATAT
131 TGGCACGCCACTTCTCACGCAACGACCCCCACTCTTCTCGGCCTCCAACCGACGTGAATAT
7372805 GTGAGACACC
Statistics
Matches: 190, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
191 190 1.00
ACGTcount: A:0.24, C:0.35, G:0.18, T:0.24
Consensus pattern (191 bp):
ACCTGTTACATCAAATGAAATTAGTCCACGTATGGCCCAGCCAAGATCCAAAACGCGTTCCATCC
GCATCAGCTAGGGTTTTCAGAACCCTAGCGCCTCATGTCATGTTCTTGATCAAGGTTCCCTCCCT
TGGCACGCCACTTCTCACGCAACGACCCCCACTCTTCTCGGCCTCCAACCGACGTGAATAT
Found at i:7373719 original size:8 final size:8
Alignment explanation
Indices: 7373706--7373742 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
7373696 CTTTGATTCA
7373706 TTTATTAT
1 TTTATTAT
7373714 TTTATTAT
1 TTTATTAT
7373722 TATT-TTAT
1 T-TTATTAT
7373730 TTT-TTAT
1 TTTATTAT
7373737 TTTATT
1 TTTATT
7373743 TCATGTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 9 0.33
8 16 0.59
9 2 0.07
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTATTAT
Found at i:7373723 original size:11 final size:11
Alignment explanation
Indices: 7373707--7373742 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
7373697 TTTGATTCAT
7373707 TTATTATTTTA
1 TTATTATTTTA
7373718 TTATTATTTTA
1 TTATTATTTTA
*
7373729 TTTTTTATTTTA
1 -TTATTATTTTA
7373741 TT
1 TT
7373743 TCATGTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:7373746 original size:40 final size:39
Alignment explanation
Indices: 7373702--7373943 Score: 102
Period size: 41 Copynumber: 5.8 Consensus size: 39
7373692 TTTCCTTTGA
7373702 TTCATTTATTATTTTATTATTATTTTATTTTTTATTTTAT
1 TTCATTTATTATTTTATTATTATTTTATTTTTTATTTT-T
* * *
7373742 TTCATGTT-TTCTCTTTGA-T-TTATTTTTATTTATATATATTT
1 TTCAT-TTATTAT-TTT-ATTATTA-TTTTATTT-TTTATTTTT
* * * *
7373783 TT-ATTTTTTTATCTTA-TATATATATATATTTTTTACATTTT
1 TTCA-TTTATTATTTTATTAT-TAT-TTTATTTTTTA-TTTTT
* * *
7373824 TTCCTTTGATTTATTTGATATATT-TTTATTTTATTTTATTTTCCT
1 TTCATTT-A-TTATTTTAT-TATTATTT-TATT-TTTTATTTT--T
* * * **
7373869 TTGATTTATTTATCTTATT-TTATTTTTATTTTTTCTCCTT
1 TTCATTTA-TTATTTTATTATTA-TTTTATTTTTTATTTTT
*
7373909 TTGATTTATTATTATTATTATTATTTTATGTTTTT
1 TTCATTTATTATT-TTATTATTATTTTAT-TTTTT
7373944 TCCTTGATTT
Statistics
Matches: 152, Mismatches: 25, Indels: 49
0.67 0.11 0.22
Matches are distributed among these distances:
39 6 0.04
40 41 0.27
41 45 0.30
42 16 0.11
43 17 0.11
44 18 0.12
45 9 0.06
ACGTcount: A:0.21, C:0.06, G:0.03, T:0.71
Consensus pattern (39 bp):
TTCATTTATTATTTTATTATTATTTTATTTTTTATTTTT
Found at i:7373765 original size:35 final size:37
Alignment explanation
Indices: 7373725--7373957 Score: 162
Period size: 40 Copynumber: 6.2 Consensus size: 37
7373715 TTATTATTAT
* *
7373725 TTTATTT-T-TTATTTTATTTCATGTTTTCTCTTTGA
1 TTTATTTATATTATTTTATTTTATTTTTTCTCTTTGA
* * *
7373760 TTTATTTTTATTTATATATATTTTTATTTTTT-TATCTT-A
1 TTTATTTATA-TTAT-TTTA-TTTTATTTTTTCTCT-TTGA
* * **
7373799 TATATATATA-TATTTT-TTACATTTTTTC-CTTTGA
1 TTTATTTATATTATTTTATTTTATTTTTTCTCTTTGA
*
7373833 TTTATTTGATA-TATTTTTATTTTATTTTATTTTCCTTTGA
1 TTTATTT-ATATTA-TTTTATTTTATTTT-TTCT-CTTTGA
*
7373873 TTTATTTATCTTATTTTATTTTTATTTTTTCTCCTTTTGA
1 TTTATTTATATTATTTTA-TTTTATTTTTTCT-C-TTTGA
*
7373913 TTTA-TTATTATTATTATTATTTTATGTTTTT-TCCTTGA
1 TTTATTTA-TATTATT-TTATTTTAT-TTTTTCTCTTTGA
7373951 TTTATTT
1 TTTATTT
7373958 CAAATTTATG
Statistics
Matches: 157, Mismatches: 20, Indels: 38
0.73 0.09 0.18
Matches are distributed among these distances:
33 2 0.01
34 16 0.10
35 12 0.08
36 7 0.04
37 10 0.06
38 14 0.09
39 31 0.20
40 57 0.36
41 8 0.05
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.70
Consensus pattern (37 bp):
TTTATTTATATTATTTTATTTTATTTTTTCTCTTTGA
Found at i:7373799 original size:25 final size:24
Alignment explanation
Indices: 7373764--7373816 Score: 79
Period size: 25 Copynumber: 2.2 Consensus size: 24
7373754 CTTTGATTTA
* *
7373764 TTTTTATTTATATATATTTTTATT
1 TTTTTATTTATATATATATATATT
7373788 TTTTTATCTTATATATATATATATT
1 TTTTTAT-TTATATATATATATATT
7373813 TTTT
1 TTTT
7373817 ACATTTTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 7 0.27
25 19 0.73
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTTTATTTATATATATATATATT
Found at i:7376943 original size:16 final size:15
Alignment explanation
Indices: 7376922--7376992 Score: 65
Period size: 16 Copynumber: 4.7 Consensus size: 15
7376912 AATCAAGAAC
7376922 AAAAAAGAAAAGAAGA
1 AAAAAAGAAAA-AAGA
*
7376938 AAAAAAG-CAAAA-A
1 AAAAAAGAAAAAAGA
*
7376951 AACAAAGAAAAAAGA
1 AAAAAAGAAAAAAGA
* *
7376966 GAAATAAGAACAAAAGG
1 -AAAAAAGAA-AAAAGA
7376983 AAAAAAGAAA
1 AAAAAAGAAA
7376993 GAACAAAGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
13 7 0.16
14 6 0.14
15 4 0.09
16 22 0.50
17 5 0.11
ACGTcount: A:0.79, C:0.04, G:0.15, T:0.01
Consensus pattern (15 bp):
AAAAAAGAAAAAAGA
Found at i:7376963 original size:36 final size:35
Alignment explanation
Indices: 7376922--7377014 Score: 98
Period size: 36 Copynumber: 2.6 Consensus size: 35
7376912 AATCAAGAAC
7376922 AAAAAAGA-AAAGAAGAAAAAAAGCAAAAAAACAAAG
1 AAAAAAGACAAA-AAGAAAAAAAG-AAAAAAACAAAG
* * * *
7376958 AAAAAAGAGAAATAAGAACAAAAGGAAAAAAGAAAG
1 AAAAAAGACAAA-AAGAAAAAAAGAAAAAAACAAAG
*
7376994 AACAAAGATCAAAAAGAAAAA
1 AAAAAAGA-CAAAAAGAAAAA
7377015 GGGATAAAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
36 32 0.67
37 16 0.33
ACGTcount: A:0.77, C:0.05, G:0.15, T:0.02
Consensus pattern (35 bp):
AAAAAAGACAAAAAGAAAAAAAGAAAAAAACAAAG
Found at i:7377024 original size:36 final size:36
Alignment explanation
Indices: 7376922--7377025 Score: 97
Period size: 36 Copynumber: 2.9 Consensus size: 36
7376912 AATCAAGAAC
* * * *
7376922 AAAAAAGA-AAAGAAGAAAAAAAGCAAAAAAACAAAG
1 AAAAAAGACAAATAAGAACAAAAG-GAAAAAAGAAAG
*
7376958 AAAAAAGAGAAATAAGAACAAAAGGAAAAAAGAAAG
1 AAAAAAGACAAATAAGAACAAAAGGAAAAAAGAAAG
* *
7376994 AACAAAGATCAAA-AAGAA-AAAGGGATAAAAAG
1 AAAAAAGA-CAAATAAGAACAAAAGGA-AAAAAG
7377026 CACATGCAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
35 6 0.10
36 36 0.62
37 16 0.28
ACGTcount: A:0.75, C:0.05, G:0.17, T:0.03
Consensus pattern (36 bp):
AAAAAAGACAAATAAGAACAAAAGGAAAAAAGAAAG
Found at i:7378806 original size:106 final size:106
Alignment explanation
Indices: 7378677--7379517 Score: 1414
Period size: 106 Copynumber: 7.9 Consensus size: 106
7378667 ATATTGTGCC
* * *
7378677 ACTCGAGACAACACAAGTTCAACTTCACGACGAAGGGACGGCTGGTTGTCAACAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
7378742 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTAG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
7378783 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
7378848 AACTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
*
7378889 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTTAACAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
7378954 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* **
7378995 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAATAAACATTTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
7379060 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
7379101 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACATACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
* *
7379166 AATTTCAGAGGCAATTTCAACTTCACAACGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
7379207 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
7379272 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* *
7379313 ACTCGAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
*
7379378 AATTTCGGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
66 AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
* * * ** * * * *
7379419 AATCGAGATAATACAAGTTCAACTTCACAACGAAGGGACGGCTGATTGTCAACAAACAATTTCCC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
** *
7379484 GGTTCCAGAGCCAATTTCAACTTCAC-GACGAAGG
66 AATTTCAGAGCCAATTTCAACTTCACAG-CGAAGG
7379518 GTATCCAATT
Statistics
Matches: 698, Mismatches: 36, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
105 1 0.00
106 697 1.00
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (106 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGGTTGTCAACAAACAACTTCCC
AATTTCAGAGCCAATTTCAACTTCACAGCGAAGGATATTGG
Found at i:7380194 original size:191 final size:191
Alignment explanation
Indices: 7379870--7380251 Score: 764
Period size: 191 Copynumber: 2.0 Consensus size: 191
7379860 ATTTGTGCAG
7379870 ACCTGTTACATCAAATGAAATTAGTCCACGTATGGCCCAGCCAAGATCCAAAACGCGTTCCATCC
1 ACCTGTTACATCAAATGAAATTAGTCCACGTATGGCCCAGCCAAGATCCAAAACGCGTTCCATCC
7379935 GCATCAGCTAGGGTTTTCAGAACCCTAGCGCCTCATGTCATGTTCTTGATCGAGGTTCCCTCCCT
66 GCATCAGCTAGGGTTTTCAGAACCCTAGCGCCTCATGTCATGTTCTTGATCGAGGTTCCCTCCCT
7380000 TGGCACGCCACTTCTCACGCAACGACCCCCACTCTTCTCGGCCTCCAACCGACGTGAATAT
131 TGGCACGCCACTTCTCACGCAACGACCCCCACTCTTCTCGGCCTCCAACCGACGTGAATAT
7380061 ACCTGTTACATCAAATGAAATTAGTCCACGTATGGCCCAGCCAAGATCCAAAACGCGTTCCATCC
1 ACCTGTTACATCAAATGAAATTAGTCCACGTATGGCCCAGCCAAGATCCAAAACGCGTTCCATCC
7380126 GCATCAGCTAGGGTTTTCAGAACCCTAGCGCCTCATGTCATGTTCTTGATCGAGGTTCCCTCCCT
66 GCATCAGCTAGGGTTTTCAGAACCCTAGCGCCTCATGTCATGTTCTTGATCGAGGTTCCCTCCCT
7380191 TGGCACGCCACTTCTCACGCAACGACCCCCACTCTTCTCGGCCTCCAACCGACGTGAATAT
131 TGGCACGCCACTTCTCACGCAACGACCCCCACTCTTCTCGGCCTCCAACCGACGTGAATAT
7380252 GTGAGACACC
Statistics
Matches: 191, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
191 191 1.00
ACGTcount: A:0.24, C:0.35, G:0.18, T:0.24
Consensus pattern (191 bp):
ACCTGTTACATCAAATGAAATTAGTCCACGTATGGCCCAGCCAAGATCCAAAACGCGTTCCATCC
GCATCAGCTAGGGTTTTCAGAACCCTAGCGCCTCATGTCATGTTCTTGATCGAGGTTCCCTCCCT
TGGCACGCCACTTCTCACGCAACGACCCCCACTCTTCTCGGCCTCCAACCGACGTGAATAT
Found at i:7381165 original size:8 final size:8
Alignment explanation
Indices: 7381152--7381188 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
7381142 CTTTGATTCA
7381152 TTTATTAT
1 TTTATTAT
7381160 TTTATTAT
1 TTTATTAT
7381168 TATT-TTAT
1 T-TTATTAT
7381176 TTT-TTAT
1 TTTATTAT
7381183 TTTATT
1 TTTATT
7381189 TCATGTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 9 0.33
8 16 0.59
9 2 0.07
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTATTAT
Found at i:7381169 original size:11 final size:11
Alignment explanation
Indices: 7381153--7381188 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
7381143 TTTGATTCAT
7381153 TTATTATTTTA
1 TTATTATTTTA
7381164 TTATTATTTTA
1 TTATTATTTTA
*
7381175 TTTTTTATTTTA
1 -TTATTATTTTA
7381187 TT
1 TT
7381189 TCATGTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:7381178 original size:40 final size:40
Alignment explanation
Indices: 7381134--7381401 Score: 129
Period size: 40 Copynumber: 6.5 Consensus size: 40
7381124 TCAACTATTC
*
7381134 ATTTTTTCCTTTGATTCATTTATTATTTTATTATTATTTT
1 ATTTTTTCCTTTGATTTATTTATTATTTTATTATTATTTT
* * *
7381174 ATTTTTT-ATTTTATTTCATGTT-TTCTCTTTGATTTATTTTTATTTAT
1 ATTTTTTCCTTTGATTT-AT-TTATTAT-TTT-A-TTA---TTATTT-T
* * *
7381221 ATATATTT--TTT-ATTTTTTTATCTTATATATATATATT-TTTT
1 AT-TTTTTCCTTTGATTTATTTA--TTAT-TTTAT-TATTATTTT
7381262 ACATTTTTTCCTTTGATTTATTTGATATATTTTTATT-TTATTTT
1 --ATTTTTTCCTTTGATTTATTT-AT-TA-TTTTATTATTATTTT
7381306 A--TTTTCCTTTGATTTATTTATCTTATTTTATT-TTA--TT
1 ATTTTTTCCTTTGATTTATTTA--TTATTTTATTATTATTTT
*
7381343 -TTTTCTCCTTTTGATTTA-TTATTA--TTATTATTATTTT
1 ATTTTTTCC-TTTGATTTATTTATTATTTTATTATTATTTT
7381380 ATGTTTTTTCC-TTGATTTATTT
1 A--TTTTTTCCTTTGATTTATTT
7381402 CAAATTTATG
Statistics
Matches: 179, Mismatches: 14, Indels: 71
0.68 0.05 0.27
Matches are distributed among these distances:
34 5 0.03
35 3 0.02
36 3 0.02
37 4 0.02
38 16 0.09
39 28 0.16
40 39 0.22
41 7 0.04
42 9 0.05
43 9 0.05
44 11 0.06
45 15 0.08
46 15 0.08
47 11 0.06
48 4 0.02
ACGTcount: A:0.20, C:0.07, G:0.03, T:0.70
Consensus pattern (40 bp):
ATTTTTTCCTTTGATTTATTTATTATTTTATTATTATTTT
Found at i:7381218 original size:34 final size:35
Alignment explanation
Indices: 7381171--7381401 Score: 157
Period size: 39 Copynumber: 6.2 Consensus size: 35
7381161 TTATTATTAT
* * *
7381171 TTTATTTTTTATTTTATTTCATGTTTTCTCTTTGA
1 TTTATTTATTATTTTATTTTATTTTTTCTCTTTGA
* * * *
7381206 TTTATTT-TTA-TTTATATATATTTTTTATTTTTTTA
1 TTTATTTATTATTTTAT-TTTATTTTTT-CTCTTTGA
**
7381241 TCTTATATATATATATTTT-TTACATTTTTTC-CTTTGA
1 T-TTAT-T-TAT-TATTTTATTTTATTTTTTCTCTTTGA
*
7381278 TTTATTTGATATATTTTTATTTTATTTTATTTTCCTTTGA
1 TTTATTT-AT-TA-TTTTATTTTATTTT-TTCT-CTTTGA
7381318 TTTATTTATCTTATTTTATTTTATTTTTTCTCCTTTTGA
1 TTTATTTA--TTATTTTATTTTATTTTTTCT-C-TTTGA
*
7381357 TTTATTATTATTATTATTATTTTATGTTTTT-TCCTTGA
1 TTTA-T-TTATTATT-TTATTTTAT-TTTTTCTCTTTGA
7381395 TTTATTT
1 TTTATTT
7381402 CAAATTTATG
Statistics
Matches: 160, Mismatches: 15, Indels: 41
0.74 0.07 0.19
Matches are distributed among these distances:
33 5 0.03
34 11 0.07
35 19 0.12
36 14 0.09
37 14 0.09
38 16 0.10
39 40 0.25
40 29 0.18
41 12 0.08
ACGTcount: A:0.19, C:0.06, G:0.03, T:0.71
Consensus pattern (35 bp):
TTTATTTATTATTTTATTTTATTTTTTCTCTTTGA
Found at i:7381269 original size:30 final size:30
Alignment explanation
Indices: 7381213--7381269 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
7381203 TGATTTATTT
* **
7381213 TTATTTATATATATTTTTTATTTTTTTATC
1 TTATATATATATATTTTTTACATTTTTATC
7381243 TTATATATATATATTTTTTACATTTTT
1 TTATATATATATATTTTTTACATTTTT
7381270 TCCTTTGATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (30 bp):
TTATATATATATATTTTTTACATTTTTATC
Found at i:7381290 original size:39 final size:38
Alignment explanation
Indices: 7381167--7381401 Score: 179
Period size: 40 Copynumber: 6.2 Consensus size: 38
7381157 TATTTTATTA
*
7381167 TTATTT-TAT-TTTTTATTTTATTTCATGTTTTCTCTTTGAT
1 TTATTTATATATTATTATTTTATTT--T-TTTTC-CTTTGAT
* *
7381207 TTATTTTTAT-TTATATATATTT-TTTATTTT--TTT-AT
1 TTATTTATATATTAT-TAT-TTTATTTTTTTTCCTTTGAT
* **
7381242 CTTATATATATA-TATT-TTTTACATTTTTTCCTTTGAT
1 -TTATTTATATATTATTATTTTATTTTTTTTCCTTTGAT
*
7381279 TTATTTGATATATTTTTATTTTATTTTATTTTCCTTTGAT
1 TTATTT-ATATATTATTATTTTATTTT-TTTTCCTTTGAT
* *
7381319 TTATTTATCTTATT-TTATTTTATTTTTTCTCCTTTTGAT
1 TTATTTAT-ATATTATTATTTTATTTTTTTTCC-TTTGAT
*
7381358 TTA-TTATTATTATTATTATTTTATGTTTTTTCC-TTGAT
1 TTATTTA-TA-TATTATTATTTTATTTTTTTTCCTTTGAT
7381396 TTATTT
1 TTATTT
7381402 CAAATTTATG
Statistics
Matches: 160, Mismatches: 16, Indels: 39
0.74 0.07 0.18
Matches are distributed among these distances:
33 3 0.02
34 6 0.04
35 3 0.02
36 22 0.14
37 7 0.04
38 19 0.12
39 41 0.26
40 44 0.28
41 6 0.04
42 6 0.04
43 3 0.02
ACGTcount: A:0.20, C:0.06, G:0.03, T:0.71
Consensus pattern (38 bp):
TTATTTATATATTATTATTTTATTTTTTTTCCTTTGAT
Found at i:7381302 original size:5 final size:5
Alignment explanation
Indices: 7381292--7381344 Score: 56
Period size: 5 Copynumber: 10.8 Consensus size: 5
7381282 TTTGATATAT
* * *
7381292 TTTTA TTTTA TTTTA TTTTCC TTTGA -TTTA -TTTA TCTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
7381341 TTTT
1 TTTT
7381345 TTCTCCTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
4 7 0.17
5 30 0.75
6 3 0.08
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:7407017 original size:2 final size:2
Alignment explanation
Indices: 7407012--7407050 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
7407002 GCTCTTAAAC
7407012 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7407051 TTTTGATCGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7409150 original size:13 final size:14
Alignment explanation
Indices: 7409132--7409164 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
7409122 CATATATAAT
*
7409132 GTTTAGGGTTTAG-
1 GTTTAGGGTCTAGA
7409145 GTTTAGGGTCTAGA
1 GTTTAGGGTCTAGA
7409159 GTTTAG
1 GTTTAG
7409165 AACCTGACTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.18, C:0.03, G:0.36, T:0.42
Consensus pattern (14 bp):
GTTTAGGGTCTAGA
Found at i:7417762 original size:13 final size:13
Alignment explanation
Indices: 7417744--7417772 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
7417734 CCGTTTTTGT
7417744 TATTAATTATATA
1 TATTAATTATATA
7417757 TATTAATTATATA
1 TATTAATTATATA
7417770 TAT
1 TAT
7417773 ACTATTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TATTAATTATATA
Found at i:7417767 original size:9 final size:10
Alignment explanation
Indices: 7417743--7417863 Score: 58
Period size: 9 Copynumber: 11.7 Consensus size: 10
7417733 TCCGTTTTTG
7417743 TTATTAATTATA
1 TTATTAA-T-TA
7417755 TATATTAATTA
1 T-TATTAATTA
*
7417766 -TATATATACTA
1 TTAT-TA-ATTA
*
7417777 TTATTAA-CA
1 TTATTAATTA
7417786 -TATT-ATTA
1 TTATTAATTA
7417794 TTATT-ATTA
1 TTATTAATTA
7417803 TTATT-ATTA
1 TTATTAATTA
7417812 TTATTAATTA
1 TTATTAATTA
* *
7417822 -CATGTTATTA
1 TTAT-TAATTA
7417832 TTATATATATATA
1 TTAT-TA-AT-TA
7417845 TTATTAATAATA
1 TTATTAAT--TA
7417857 TTATTAA
1 TTATTAA
7417864 ATAATATGAC
Statistics
Matches: 89, Mismatches: 8, Indels: 24
0.74 0.07 0.20
Matches are distributed among these distances:
7 1 0.01
8 5 0.06
9 28 0.31
10 12 0.13
11 12 0.13
12 19 0.21
13 12 0.13
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.55
Consensus pattern (10 bp):
TTATTAATTA
Found at i:7417792 original size:3 final size:3
Alignment explanation
Indices: 7417786--7417862 Score: 75
Period size: 3 Copynumber: 24.7 Consensus size: 3
7417776 ATTATTAACA
* *
7417786 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAAT TACA TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TA-T TAT TAT TAT
* *
7417833 TA- TAT ATAT ATAT TAT TAA TAA TAT TAT TA
1 TAT TAT -TAT -TAT TAT TAT TAT TAT TAT TA
7417863 AATAATATGA
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
2 2 0.03
3 51 0.80
4 11 0.17
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:7417866 original size:13 final size:13
Alignment explanation
Indices: 7417827--7417870 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 13
7417817 AATTACATGT
7417827 TATTATTATATATATA
1 TATTATTA-A-ATA-A
7417843 TATTATT-AATAA
1 TATTATTAAATAA
7417855 TATTATTAAATAA
1 TATTATTAAATAA
7417868 TAT
1 TAT
7417871 GACAAGCCCA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 8 0.30
13 11 0.41
14 1 0.04
16 7 0.26
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TATTATTAAATAA
Found at i:7426285 original size:42 final size:42
Alignment explanation
Indices: 7426233--7426314 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
7426223 CATGAATTTG
*
7426233 TAAATCCTTTGGGTCATATGTAAGTCCTTCGAGCATGATGTT
1 TAAATCCTTTGGGTCATATGTAAGTCCTTCGAGCAAGATGTT
* * * *
7426275 TAAATTCTTTGGGTCATCTGTCAGTCTTTCGAGCAAGATG
1 TAAATCCTTTGGGTCATATGTAAGTCCTTCGAGCAAGATG
7426315 ATAAGTCCTT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (42 bp):
TAAATCCTTTGGGTCATATGTAAGTCCTTCGAGCAAGATGTT
Found at i:7426608 original size:3 final size:3
Alignment explanation
Indices: 7426530--7426593 Score: 53
Period size: 3 Copynumber: 21.0 Consensus size: 3
7426520 TTGTTCGTTT
* *
7426530 TTA TTA TTAA TTA -TA TATA TTAA TTA -TA TATG TTA TTA TTA TCA -TA
1 TTA TTA TT-A TTA TTA T-TA TT-A TTA TTA T-TA TTA TTA TTA TTA TTA
7426576 TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA
7426594 ATTACATGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
2 5 0.10
3 34 0.68
4 11 0.22
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:7426613 original size:2 final size:2
Alignment explanation
Indices: 7426606--7426646 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7426596 TACATGTTAT
7426606 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7426647 TAATAATATT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7426659 original size:12 final size:13
Alignment explanation
Indices: 7426531--7426673 Score: 89
Period size: 16 Copynumber: 10.4 Consensus size: 13
7426521 TGTTCGTTTT
7426531 TATTATTAAT-TA
1 TATTATTAATATA
7426543 TATATATTAATTATA
1 TAT-TATTAA-TATA
*
7426558 TATGTTATTATTATCA
1 TA--TTATTAATAT-A
*
7426574 TATTATTATTAT-
1 TATTATTAATATA
*
7426586 TATTATTAATTACA
1 TATTATTAA-TATA
*
7426600 TGTTATT-ATATA
1 TATTATTAATATA
7426612 TATATATATATATATA
1 TAT-TAT-TA-ATATA
7426628 TATATATATATATATA
1 TAT-TAT-TA-ATATA
*
7426644 TATTAATAATAT-
1 TATTATTAATATA
7426656 TATTATTAA-ATAA
1 TATTATTAATAT-A
7426669 TATTA
1 TATTA
7426674 CAAGACCAAA
Statistics
Matches: 109, Mismatches: 8, Indels: 27
0.76 0.06 0.19
Matches are distributed among these distances:
11 2 0.02
12 24 0.22
13 21 0.19
14 20 0.18
15 9 0.08
16 32 0.29
17 1 0.01
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (13 bp):
TATTATTAATATA
Found at i:7426669 original size:16 final size:17
Alignment explanation
Indices: 7426530--7426673 Score: 73
Period size: 20 Copynumber: 8.2 Consensus size: 17
7426520 TTGTTCGTTT
*
7426530 TTATTATTAATTATATA
1 TTATTATTAAATATATA
* *
7426547 -TATTAATTATATATGTTA
1 TTATT-ATTAAATAT-ATA
* *
7426565 TTATTATCATATTATTATTA
1 TTATTATTA-AATA-TA-TA
* * *
7426585 TTATTATTAATTACATG
1 TTATTATTAAATATATA
*
7426602 TTATTA-TATATATATA
1 TTATTATTAAATATATA
*
7426618 TATATATATATATATATATA
1 T-TAT-TAT-TAAATATATA
7426638 TATATATATT-AATA-ATA
1 T-TAT-TATTAAATATATA
7426655 TTATTATTAAATA-ATA
1 TTATTATTAAATATATA
7426671 TTA
1 TTA
7426674 CAAGACCAAA
Statistics
Matches: 101, Mismatches: 15, Indels: 23
0.73 0.11 0.17
Matches are distributed among these distances:
15 4 0.04
16 24 0.24
17 21 0.21
18 11 0.11
19 11 0.11
20 30 0.30
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (17 bp):
TTATTATTAAATATATA
Found at i:7429308 original size:21 final size:19
Alignment explanation
Indices: 7429277--7429330 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
7429267 TGTTCTTTGC
*
7429277 AATATCTATACC-ACATGAAT
1 AATATCGATACCTACATG--T
7429297 AGATATCGATACCCTACATGT
1 A-ATATCGATA-CCTACATGT
7429318 AATATCGATACCT
1 AATATCGATACCT
7429331 TAGGCAAAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 3 0.10
20 10 0.33
21 10 0.33
22 2 0.07
23 5 0.17
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (19 bp):
AATATCGATACCTACATGT
Found at i:7429904 original size:33 final size:33
Alignment explanation
Indices: 7429856--7429919 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
7429846 AAGGGGTTTT
*
7429856 GGTTCTAGCTAAACCTGCT-AAAAGCTAGGGAAA
1 GGTTCTAGCTAAACCTG-TGAAAACCTAGGGAAA
* *
7429889 GGTTCTAGTTTAACCTGTGAAAACCTAGGGA
1 GGTTCTAGCTAAACCTGTGAAAACCTAGGGA
7429920 GTTTGTAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 1 0.04
33 26 0.96
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (33 bp):
GGTTCTAGCTAAACCTGTGAAAACCTAGGGAAA
Found at i:7431085 original size:23 final size:23
Alignment explanation
Indices: 7430984--7431085 Score: 98
Period size: 23 Copynumber: 4.4 Consensus size: 23
7430974 GAGTCGAGGG
* * * *
7430984 TTCTACGCGGTCCATCGAGACAA
1 TTCTACGTGGTCCTTTGGGACAA
*
7431007 TTCTACGTGGTCATTTGGGACAA
1 TTCTACGTGGTCCTTTGGGACAA
**
7431030 TTCTACACGGTCCTTTGGGAC-A
1 TTCTACGTGGTCCTTTGGGACAA
* * *
7431052 TATCTATGTGGTCCTTTAGGACAT
1 T-TCTACGTGGTCCTTTGGGACAA
7431076 TTCTACGTGG
1 TTCTACGTGG
7431086 CACTGTGGTG
Statistics
Matches: 63, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
22 2 0.03
23 60 0.95
24 1 0.02
ACGTcount: A:0.21, C:0.23, G:0.24, T:0.33
Consensus pattern (23 bp):
TTCTACGTGGTCCTTTGGGACAA
Found at i:7433874 original size:18 final size:18
Alignment explanation
Indices: 7433851--7433895 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
7433841 AACATTCACA
* *
7433851 GTAATCTTATTTCCGCCG
1 GTAATCTTATTCCCACCG
* *
7433869 GTAATCCTATTCCCACTG
1 GTAATCTTATTCCCACCG
7433887 GTAATCTTA
1 GTAATCTTA
7433896 CATTCCGTGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.38
Consensus pattern (18 bp):
GTAATCTTATTCCCACCG
Found at i:7441597 original size:14 final size:14
Alignment explanation
Indices: 7441578--7441635 Score: 89
Period size: 14 Copynumber: 4.1 Consensus size: 14
7441568 TAACAAATTT
7441578 GTCTATTTTCTACA
1 GTCTATTTTCTACA
7441592 GTCTATTTTCTACA
1 GTCTATTTTCTACA
* *
7441606 TTCTATTTTATACA
1 GTCTATTTTCTACA
*
7441620 GTCTGTTTTCTACA
1 GTCTATTTTCTACA
7441634 GT
1 GT
7441636 ACTTAATGAG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 39 1.00
ACGTcount: A:0.21, C:0.19, G:0.09, T:0.52
Consensus pattern (14 bp):
GTCTATTTTCTACA
Found at i:7446101 original size:19 final size:20
Alignment explanation
Indices: 7446058--7446105 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
7446048 GTGCCAACAT
*
7446058 TATCGATACTAACCCTTGGG
1 TATCGATACTAACCCTTGAG
* *
7446078 TATCGATCCTCACCC-TGAG
1 TATCGATACTAACCCTTGAG
7446097 TATCGATAC
1 TATCGATAC
7446106 CAAATATAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 11 0.46
20 13 0.54
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (20 bp):
TATCGATACTAACCCTTGAG
Found at i:7449031 original size:103 final size:103
Alignment explanation
Indices: 7448843--7449057 Score: 342
Period size: 103 Copynumber: 2.1 Consensus size: 103
7448833 TGACGGCGAT
* *
7448843 GAAAAATATGAAATGATGGATGAAAACAAAAATGTCTTGAACCAAGAAGAAGCGGGAGCTTCTGC
1 GAAAAAGATGAAATGATGGATGAAAACAAAAATGTCTTGAACCAAGAAGAAGCGGGAGCTTCCGC
*
7448908 AAGGCTTTACTGCTGAGAAAGTTCGCACATTCGTCGGA
66 AAGGCTTTACTACTGAGAAAGTTCGCACATTCGTCGGA
* *
7448946 GAAAAAGATGGAATGATGGATGAAAACAAAAATGTCTTGAACCAAGAAGAAGCGGGAGCTTCCGT
1 GAAAAAGATGAAATGATGGATGAAAACAAAAATGTCTTGAACCAAGAAGAAGCGGGAGCTTCCGC
* * *
7449011 AAGGCTTTACTACT-ATGAAAGTTTGCACCTTGGTCGGA
66 AAGGCTTTACTACTGA-GAAAGTTCGCACATTCGTCGGA
7449049 GAAAAAGAT
1 GAAAAAGAT
7449058 TCATCGCCAA
Statistics
Matches: 103, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
102 1 0.01
103 102 0.99
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (103 bp):
GAAAAAGATGAAATGATGGATGAAAACAAAAATGTCTTGAACCAAGAAGAAGCGGGAGCTTCCGC
AAGGCTTTACTACTGAGAAAGTTCGCACATTCGTCGGA
Found at i:7463891 original size:135 final size:135
Alignment explanation
Indices: 7463646--7463906 Score: 405
Period size: 135 Copynumber: 1.9 Consensus size: 135
7463636 ACGTTCCGAA
7463646 TTATTTTTCATGCTCATATTTTAGATCTATGAGTTCAAATCAGGGTGGCGACATCTTCAAAGGTG
1 TTATTTTTCATGCTCATATTTTAGATCTATGAGTTCAAATCAGGGTGGCGACATCTTCAAAGGTG
*
7463711 TTCTAACAACGTTTAACCAGAATATAATATTTTAATACTTTTAGTGGGCACATGAATTTGTGGGC
66 TTCTAACAACGTTTAACCAGAATATAATATTTTAATACTTATAGTGGGCACATGAATTTGTGGGC
7463776 CTAAG
131 CTAAG
* * * * * *
7463781 TTATTTTTCGTTCTCATATTTTATATCTATGAGTTCGAATCAGGGTGGCGACATCTTTAAAGTTG
1 TTATTTTTCATGCTCATATTTTAGATCTATGAGTTCAAATCAGGGTGGCGACATCTTCAAAGGTG
* * * * * *
7463846 TTTTAGCAACGTTTAACCAGAATATAATTTTTTAGTACTTATAGTGGGCATATGTATTTGT
66 TTCTAACAACGTTTAACCAGAATATAATATTTTAATACTTATAGTGGGCACATGAATTTGT
7463907 AAACCTATGT
Statistics
Matches: 113, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
135 113 1.00
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (135 bp):
TTATTTTTCATGCTCATATTTTAGATCTATGAGTTCAAATCAGGGTGGCGACATCTTCAAAGGTG
TTCTAACAACGTTTAACCAGAATATAATATTTTAATACTTATAGTGGGCACATGAATTTGTGGGC
CTAAG
Found at i:7465701 original size:23 final size:23
Alignment explanation
Indices: 7465657--7465701 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
7465647 CTTTCGATTT
* **
7465657 GCTGCTGTTGGTTTATTTTTTTC
1 GCTGCTGTTGGTTCATCCTTTTC
*
7465680 GCTGCTGTTGGTTCCTCCTTTT
1 GCTGCTGTTGGTTCATCCTTTT
7465702 TGCTCATTTC
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.02, C:0.20, G:0.22, T:0.56
Consensus pattern (23 bp):
GCTGCTGTTGGTTCATCCTTTTC
Found at i:7466152 original size:3 final size:3
Alignment explanation
Indices: 7466144--7466177 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
7466134 TATTTGTAAT
7466144 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
7466178 CGAAACAACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:7466601 original size:45 final size:45
Alignment explanation
Indices: 7466392--7467106 Score: 725
Period size: 45 Copynumber: 15.8 Consensus size: 45
7466382 TAAAATCTCA
* * * *
7466392 TTTGAAAACATCCTGCATTGAAGGTCTTATG-GATGGCCTGAAGGAA
1 TTTGAAAACATCCTGCACTGAAGGTCTTA-GAGATGACCCGAAGG-T
* * *
7466438 TTTAAAAATAGCCTGCACTGAAGGTCTTATG-GATGACCCGAAGGCTT
1 TTTGAAAACATCCTGCACTGAAGGTCTTA-GAGATGACCCGAAGG--T
* * *
7466485 TTTGAAAACATCTTGTACTGTAGGTCTTATG-GATGACCCGAAGGCTT
1 TTTGAAAACATCCTGCACTGAAGGTCTTA-GAGATGACCCGAAGG--T
* * *
7466532 TTTGAAAACATCTTACACTTAAGGTCTTAGAGATGACCCGAAGGT
1 TTTGAAAACATCCTGCACTGAAGGTCTTAGAGATGACCCGAAGGT
* * * *
7466577 TTTGAAATCATCCTGCACTGAAGGTCTTATAGATGACCCAAAGGC
1 TTTGAAAACATCCTGCACTGAAGGTCTTAGAGATGACCCGAAGGT
* * * *
7466622 TTTGAAAACATCCTGCACT-ATTGGTCTTACAGATGACCCAAAGGC
1 TTTGAAAACATCCTGCACTGA-AGGTCTTAGAGATGACCCGAAGGT
* * *
7466667 TTTGAAAACATCCTGCACT-ATTGGTCTTACAGATGACCCGAAGGC
1 TTTGAAAACATCCTGCACTGA-AGGTCTTAGAGATGACCCGAAGGT
* * *
7466712 TTTAAAAACATCCTGCACTGTAGGTCTTATG-GATGA-CCGAAAGAT
1 TTTGAAAACATCCTGCACTGAAGGTCTTA-GAGATGACCCG-AAGGT
* * * *
7466757 TTTGAAAACATCATGCACTGAAGGTGTTACAGATGACCCTAAGGT
1 TTTGAAAACATCCTGCACTGAAGGTCTTAGAGATGACCCGAAGGT
* *
7466802 TTTGAAAACATCTTGCACT-ATAAGTCTTATG-GATGACCCGAAGGT
1 TTTGAAAACATCCTGCACTGA-AGGTCTTA-GAGATGACCCGAAGGT
* * * * * *
7466847 TTTGAAAACATCTTGCATTGAAGGTCTTATAGATGACCTGAGGGC
1 TTTGAAAACATCCTGCACTGAAGGTCTTAGAGATGACCCGAAGGT
* *
7466892 TTTGAAAACATCCTGCA-TTATAGGTCTTATG-GATAACCCGAAGGT
1 TTTGAAAACATCCTGCACTGA-AGGTCTTA-GAGATGACCCGAAGGT
*
7466937 TTTGAAAACATCCTGCACTAAAGGTCTTATG-GATGACCCGAAGGT
1 TTTGAAAACATCCTGCACTGAAGGTCTTA-GAGATGACCCGAAGGT
* *
7466982 TTTGAAAACATCCTGCACTGAAGATCTTATAGATGACCCGAAGGT
1 TTTGAAAACATCCTGCACTGAAGGTCTTAGAGATGACCCGAAGGT
* * ** *
7467027 TTTGAAAACATCTTGCACTGAAGGTCTTATAGATGAATCGAAGGC
1 TTTGAAAACATCCTGCACTGAAGGTCTTAGAGATGACCCGAAGGT
* * *
7467072 TTTGAAAACATCCTGCACTGTAGTTCTTACAGATG
1 TTTGAAAACATCCTGCACTGAAGGTCTTAGAGATG
7467107 TGGGAAATAG
Statistics
Matches: 579, Mismatches: 74, Indels: 33
0.84 0.11 0.05
Matches are distributed among these distances:
44 7 0.01
45 449 0.78
46 44 0.08
47 79 0.14
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (45 bp):
TTTGAAAACATCCTGCACTGAAGGTCTTAGAGATGACCCGAAGGT
Found at i:7466671 original size:90 final size:90
Alignment explanation
Indices: 7466392--7467106 Score: 828
Period size: 90 Copynumber: 7.9 Consensus size: 90
7466382 TAAAATCTCA
* * * * * * * *
7466392 TTTGAAAACATCCTGCATTGAAGGTCTTATGGATGGCCTGAAGGAATTTAAAAATAGCCTGCACT
1 TTTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGG-CTTTGAAAACATCCTGCACT
*
7466457 GA-AGGTCTTATGGATGACCCGAAGGCTT
65 -ATAGGTCTTATAGATGACCCGAAGG--T
* * * * * *
7466485 TTTGAAAACATCTTGTACTGTAGGTCTTATGGATGACCCGAAGGCTTTTTGAAAACATCTTACAC
1 TTTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGC--TTTGAAAACATCCTGCAC
*
7466550 T-TAAGGTCTTAGAGATGACCCGAAGGT
64 TAT-AGGTCTTATAGATGACCCGAAGGT
* *
7466577 TTTGAAATCATCCTGCACTGAAGGTCTTATAGATGACCCAAAGGCTTTGAAAACATCCTGCACTA
1 TTTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCCTGCACTA
* * * *
7466642 TTGGTCTTACAGATGACCCAAAGGC
66 TAGGTCTTATAGATGACCCGAAGGT
* * *
7466667 TTTGAAAACATCCTGCACT-ATTGGTCTTACAGATGACCCGAAGGCTTTAAAAACATCCTGCACT
1 TTTGAAAACATCCTGCACTGA-AGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCCTGCACT
* * *
7466731 GTAGGTCTTATGGATGA-CCGAAAGAT
65 ATAGGTCTTATAGATGACCCG-AAGGT
* * * * * *
7466757 TTTGAAAACATCATGCACTGAAGGTGTTACAGATGACCCTAAGGTTTTGAAAACATCTTGCACTA
1 TTTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCCTGCACTA
* *
7466822 TAAGTCTTATGGATGACCCGAAGGT
66 TAGGTCTTATAGATGACCCGAAGGT
* * * * *
7466847 TTTGAAAACATCTTGCATTGAAGGTCTTATAGATGACCTGAGGGCTTTGAAAACATCCTGCATTA
1 TTTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCCTGCACTA
* *
7466912 TAGGTCTTATGGATAACCCGAAGGT
66 TAGGTCTTATAGATGACCCGAAGGT
* * *
7466937 TTTGAAAACATCCTGCACTAAAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCCTGCACTG
1 TTTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCCTGCACT-
*
7467002 A-AGATCTTATAGATGACCCGAAGGT
65 ATAGGTCTTATAGATGACCCGAAGGT
* ** *
7467027 TTTGAAAACATCTTGCACTGAAGGTCTTATAGATGAATCGAAGGCTTTGAAAACATCCTGCACTG
1 TTTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCCTGCACTA
* *
7467092 TAGTTCTTACAGATG
66 TAGGTCTTATAGATG
7467107 TGGGAAATAG
Statistics
Matches: 531, Mismatches: 80, Indels: 25
0.83 0.13 0.04
Matches are distributed among these distances:
89 3 0.01
90 409 0.77
91 6 0.01
92 40 0.08
93 38 0.07
94 35 0.07
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (90 bp):
TTTGAAAACATCCTGCACTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCCTGCACTA
TAGGTCTTATAGATGACCCGAAGGT
Found at i:7466724 original size:135 final size:135
Alignment explanation
Indices: 7466392--7467106 Score: 810
Period size: 135 Copynumber: 5.3 Consensus size: 135
7466382 TAAAATCTCA
* * * * * * * *
7466392 TTTGAAAACATCCTGCATTGA-AGGTCTTATGGATGGCCTGAAGGAATTTAAAAATAGCCTGCAC
1 TTTGAAAACATCCTGCACT-ATAGGTCTTATAGATGACCCGAAGG-TTTTGAAAACATCCTGCAC
* * * * *
7466456 TGAAGGTCTTATGGATGACCCGAAGGCTTTTTGAAAACATCTTGTACTGTAGGTCTTATGGATGA
64 TGAAGGTCTTATAGATGACCCGAAGGC--TTTGAAAACATCCTGCACTATAGGTCTTATAGATGA
7466521 CCCGAAGGC
127 CCCGAAGGC
* * * *
7466530 TTTTTGAAAACATCTTACACT-TAAGGTCTTAGAGATGACCCGAAGGTTTTGAAATCATCCTGCA
1 --TTTGAAAACATCCTGCACTAT-AGGTCTTATAGATGACCCGAAGGTTTTGAAAACATCCTGCA
* * *
7466594 CTGAAGGTCTTATAGATGACCCAAAGGCTTTGAAAACATCCTGCACTATTGGTCTTACAGATGAC
63 CTGAAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCCTGCACTATAGGTCTTATAGATGAC
*
7466659 CCAAAGGC
128 CCGAAGGC
* * * *
7466667 TTTGAAAACATCCTGCACTATTGGTCTTACAGATGACCCGAAGGCTTTAAAAACATCCTGCACTG
1 TTTGAAAACATCCTGCACTATAGGTCTTATAGATGACCCGAAGGTTTTGAAAACATCCTGCACTG
* * ** * * *
7466732 TAGGTCTTATGGATGA-CCGAAAGATTTTGAAAACATCATGCACTGA-AGGTGTTACAGATGACC
66 AAGGTCTTATAGATGACCCG-AAGGCTTTGAAAACATCCTGCACT-ATAGGTCTTATAGATGACC
* *
7466795 CTAAGGT
129 CGAAGGC
* * * * *
7466802 TTTGAAAACATCTTGCACTATAAGTCTTATGGATGACCCGAAGGTTTTGAAAACATCTTGCATTG
1 TTTGAAAACATCCTGCACTATAGGTCTTATAGATGACCCGAAGGTTTTGAAAACATCCTGCACTG
* * * * *
7466867 AAGGTCTTATAGATGACCTGAGGGCTTTGAAAACATCCTGCATTATAGGTCTTATGGATAACCCG
66 AAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCCTGCACTATAGGTCTTATAGATGACCCG
*
7466932 AAGGT
131 AAGGC
* *
7466937 TTTGAAAACATCCTGCACTAAAGGTCTTATGGATGACCCGAAGGTTTTGAAAACATCCTGCACTG
1 TTTGAAAACATCCTGCACTATAGGTCTTATAGATGACCCGAAGGTTTTGAAAACATCCTGCACTG
* * * **
7467002 AAGATCTTATAGATGACCCGAAGGTTTTGAAAACATCTTGCACTGA-AGGTCTTATAGATGAATC
66 AAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCCTGCACT-ATAGGTCTTATAGATGACCC
7467066 GAAGGC
130 GAAGGC
* * *
7467072 TTTGAAAACATCCTGCACTGTAGTTCTTACAGATG
1 TTTGAAAACATCCTGCACTATAGGTCTTATAGATG
7467107 TGGGAAATAG
Statistics
Matches: 486, Mismatches: 81, Indels: 21
0.83 0.14 0.04
Matches are distributed among these distances:
134 3 0.01
135 366 0.75
136 5 0.01
137 38 0.08
139 39 0.08
140 35 0.07
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (135 bp):
TTTGAAAACATCCTGCACTATAGGTCTTATAGATGACCCGAAGGTTTTGAAAACATCCTGCACTG
AAGGTCTTATAGATGACCCGAAGGCTTTGAAAACATCCTGCACTATAGGTCTTATAGATGACCCG
AAGGC
Found at i:7467794 original size:22 final size:21
Alignment explanation
Indices: 7467764--7467816 Score: 81
Period size: 20 Copynumber: 2.5 Consensus size: 21
7467754 AATAAATATT
*
7467764 TCATCTTTGAAAGGAGAATCTA
1 TCATTTTTGAAA-GAGAATCTA
7467786 TCATTTTTG-AAGAGAATCTA
1 TCATTTTTGAAAGAGAATCTA
7467806 TCATTTTTGAA
1 TCATTTTTGAA
7467817 GAATGTAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 18 0.62
21 3 0.10
22 8 0.28
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (21 bp):
TCATTTTTGAAAGAGAATCTA
Found at i:7467802 original size:20 final size:20
Alignment explanation
Indices: 7467777--7467818 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
7467767 TCTTTGAAAG
7467777 GAGAATCTATCATTTTTGAA
1 GAGAATCTATCATTTTTGAA
7467797 GAGAATCTATCATTTTTGAA
1 GAGAATCTATCATTTTTGAA
7467817 GA
1 GA
7467819 ATGTAGATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.38
Consensus pattern (20 bp):
GAGAATCTATCATTTTTGAA
Found at i:7468277 original size:54 final size:54
Alignment explanation
Indices: 7468185--7468346 Score: 261
Period size: 54 Copynumber: 3.0 Consensus size: 54
7468175 ATAATCATTG
* * * *
7468185 GTTCATAAAACATTTGACAACACATTCATTCTTTCCTGTGGCTTCTGTCCAGAT
1 GTTCGTAAAGCATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
7468239 GTTCGTAAAGCATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
1 GTTCGTAAAGCATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
* * *
7468293 GTTCGTAAAGCATTTGACAATACATTCATCCTTTCCTGTGGCTCCTACCCAGAT
1 GTTCGTAAAGCATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
7468347 TTCTACATCA
Statistics
Matches: 101, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 101 1.00
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.35
Consensus pattern (54 bp):
GTTCGTAAAGCATTTGACAACACATTCATCCTTTCCTGTGGCTTCTGCCCAGAT
Found at i:7473578 original size:21 final size:21
Alignment explanation
Indices: 7473540--7473583 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
7473530 GTACGAATTC
*
7473540 AATGAAAATGCAAATATGCAA
1 AATGAAAATGCAAATATGAAA
**
7473561 AATGAAAATGCATGTATGAAA
1 AATGAAAATGCAAATATGAAA
7473582 AA
1 AA
7473584 GGTGTTACTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.57, C:0.07, G:0.16, T:0.20
Consensus pattern (21 bp):
AATGAAAATGCAAATATGAAA
Found at i:7477938 original size:3 final size:3
Alignment explanation
Indices: 7477930--7477995 Score: 69
Period size: 3 Copynumber: 22.0 Consensus size: 3
7477920 TATTTGTAAT
* * * * *
7477930 TAA TAA TAA TAA TAA GAA TAA GAA TAA GAA TAA TAA TAT TTA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
7477978 TAA TAA AAA TAA AAA TAA
1 TAA TAA TAA TAA TAA TAA
7477996 AAATCGAAAC
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:7485165 original size:23 final size:22
Alignment explanation
Indices: 7485121--7485179 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 22
7485111 ATATTTATAC
7485121 ATATTAACTATAAAAAATATTTTT
1 ATATTAACT-TAAAAAATA-TTTT
**
7485145 ATATTAACTTATGAAATATTTT
1 ATATTAACTTAAAAAATATTTT
7485167 ATTATTAACTTAA
1 A-TATTAACTTAA
7485180 TTTAAAAGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 5 0.16
23 17 0.55
24 9 0.29
ACGTcount: A:0.46, C:0.05, G:0.02, T:0.47
Consensus pattern (22 bp):
ATATTAACTTAAAAAATATTTT
Found at i:7485224 original size:20 final size:20
Alignment explanation
Indices: 7485199--7485237 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
7485189 ATTTCATTTT
7485199 TATTTTAAT-TTAAAAATATG
1 TATTTT-ATGTTAAAAATATG
7485219 TATTTTATGTTAAAAATAT
1 TATTTTATGTTAAAAATAT
7485238 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (20 bp):
TATTTTATGTTAAAAATATG
Found at i:7485429 original size:27 final size:25
Alignment explanation
Indices: 7485397--7485449 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 25
7485387 TATATTTTTA
*
7485397 AATAAAATATTTTTAAATTAAGTTAAT
1 AATAAAATATATTT-AA-TAAGTTAAT
7485424 AATAAAATATATTTAATAAGTTAAT
1 AATAAAATATATTTAATAAGTTAAT
7485449 A
1 A
7485450 TTAAGTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 10 0.40
26 2 0.08
27 13 0.52
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (25 bp):
AATAAAATATATTTAATAAGTTAAT
Found at i:7489400 original size:7 final size:7
Alignment explanation
Indices: 7489390--7489437 Score: 87
Period size: 7 Copynumber: 6.9 Consensus size: 7
7489380 GCATCCCATC
*
7489390 TCCATTC
1 TCCATTA
7489397 TCCATTA
1 TCCATTA
7489404 TCCATTA
1 TCCATTA
7489411 TCCATTA
1 TCCATTA
7489418 TCCATTA
1 TCCATTA
7489425 TCCATTA
1 TCCATTA
7489432 TCCATT
1 TCCATT
7489438 CTCGTCTACC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.25, C:0.31, G:0.00, T:0.44
Consensus pattern (7 bp):
TCCATTA
Found at i:7494899 original size:30 final size:30
Alignment explanation
Indices: 7494848--7494955 Score: 96
Period size: 30 Copynumber: 3.6 Consensus size: 30
7494838 CCCATGAAAG
* *
7494848 CAAACCAAAGAAAGA-AGAAACCCACCACAA
1 CAAACCAAAGAAA-ACAAAAACCCATCACAA
* *
7494878 CAAACCAAAGAAAACAAAAACCC-TCATAG
1 CAAACCAAAGAAAACAAAAACCCATCACAA
* * *
7494907 CAGAAGCAAAGGAAACAAAATCCCATCACAA
1 CA-AACCAAAGAAAACAAAAACCCATCACAA
*
7494938 CAAAAACAAAG-AAACAAA
1 C-AAACCAAAGAAAACAAA
7494956 TATAGGGGTA
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
29 6 0.09
30 45 0.70
31 12 0.19
32 1 0.02
ACGTcount: A:0.61, C:0.26, G:0.09, T:0.04
Consensus pattern (30 bp):
CAAACCAAAGAAAACAAAAACCCATCACAA
Found at i:7495256 original size:22 final size:22
Alignment explanation
Indices: 7495231--7495276 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
7495221 ATTTGTTTAA
*
7495231 TTATAAATTTAGTCCTTCAACT
1 TTATAAATTTAGTCATTCAACT
7495253 TTATAAATTTAGTCATTCAACT
1 TTATAAATTTAGTCATTCAACT
7495275 TT
1 TT
7495277 GAAGTATTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.15, G:0.04, T:0.48
Consensus pattern (22 bp):
TTATAAATTTAGTCATTCAACT
Found at i:7495319 original size:28 final size:27
Alignment explanation
Indices: 7495276--7495351 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 27
7495266 CATTCAACTT
7495276 TGAAGTATTGAAGTTACTTAATGAAATC
1 TGAAGTATTGAAGTTACTTAA-GAAATC
* *
7495304 T-ATAGTATTGAAGTTACTCTAAGATATT
1 TGA-AGTATTGAAGTTACT-TAAGAAATC
7495332 TGAAGTATTGAAGTTACTTA
1 TGAAGTATTGAAGTTACTTA
7495352 TAAAATTTGA
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 3 0.07
28 36 0.84
29 4 0.09
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (27 bp):
TGAAGTATTGAAGTTACTTAAGAAATC
Found at i:7497294 original size:75 final size:75
Alignment explanation
Indices: 7497210--7497369 Score: 266
Period size: 75 Copynumber: 2.1 Consensus size: 75
7497200 GAAAAGAATA
* * *
7497210 GATACCATGGATTCCAAAATGTCGAAATGATATCGATATTGAAAGGGAGTATCGATACCATAGTA
1 GATACCATGGATTCCAAAATGTCAAAATGATATCGATACTAAAAGGGAGTATCGATACCATAGTA
*
7497275 TAGAAGTATT
66 TAGAAGTATC
* *
7497285 GATACCATGGATTCCATAATGTCAAAATGGTATCGATACTAAAAGGGAGTATCGATACCATAGTA
1 GATACCATGGATTCCAAAATGTCAAAATGATATCGATACTAAAAGGGAGTATCGATACCATAGTA
7497350 TAGAAGTATC
66 TAGAAGTATC
7497360 GATACCATGG
1 GATACCATGG
7497370 TATGGATACC
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 79 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (75 bp):
GATACCATGGATTCCAAAATGTCAAAATGATATCGATACTAAAAGGGAGTATCGATACCATAGTA
TAGAAGTATC
Found at i:7498492 original size:23 final size:22
Alignment explanation
Indices: 7498465--7498514 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
7498455 AAGTGTTAAT
*
7498465 AATGCAAGTTAGATAAAAGGTTA
1 AATGC-AGTTAGATAAAAGATTA
** *
7498488 AATGCCTTTGGATAAAAGATTA
1 AATGCAGTTAGATAAAAGATTA
7498510 AATGC
1 AATGC
7498515 CTAACTGTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.44, C:0.08, G:0.20, T:0.28
Consensus pattern (22 bp):
AATGCAGTTAGATAAAAGATTA
Found at i:7498572 original size:23 final size:22
Alignment explanation
Indices: 7498546--7498595 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
7498536 AGGTACCAAT
*
7498546 AATGCAAGTTAGATAAAAGTTTA
1 AATGC-AGTTAGATAAAAGATTA
** *
7498569 AATGCCTTTGGATAAAAGATTA
1 AATGCAGTTAGATAAAAGATTA
7498591 AATGC
1 AATGC
7498596 CTAACTGTGC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.44, C:0.08, G:0.18, T:0.30
Consensus pattern (22 bp):
AATGCAGTTAGATAAAAGATTA
Found at i:7498668 original size:81 final size:81
Alignment explanation
Indices: 7497783--7498658 Score: 1010
Period size: 81 Copynumber: 10.9 Consensus size: 81
7497773 TTTTAAAATG
* * * *
7497783 AAAGATTAAATGCCTAACTGTGCATTTGGAAAAAAGGAGCCAATCATGCAAGTTAGATTAAAGTT
1 AAAGATTAAATGCCTAACTGTGCATTTGGCAAAAAGGTGCCAATCATGCAAGTTAGATGAAAGGT
7497848 TAAATGCCTTTGGGTA
66 TAAATGCCTTTGGGTA
* *
7497864 AAAGATCAAATGCCTAACTGTGCATTTGGCAAAAAGGTGTC-A--AT-C-A-TTAGATGAAA-GT
1 AAAGATTAAATGCCTAACTGTGCATTTGGCAAAAAGGTGCCAATCATGCAAGTTAGATGAAAGGT
7497922 TAAATGCCTTTGGGTA
66 TAAATGCCTTTGGGTA
* * * ***
7497938 AAATATTAAACGCCTAACTGTGCATTTGGCAGAAAGGTATTAATCATGCAAGTTAGATGAAAGGT
1 AAAGATTAAATGCCTAACTGTGCATTTGGCAAAAAGGTGCCAATCATGCAAGTTAGATGAAAGGT
* *
7498003 TAAATGTCATTGGGTA
66 TAAATGCCTTTGGGTA
* * *
7498019 AACA-ATTAAATGCCTAACTATGCATTTGGAAAAAAGGTGCCAATCATGCAAGTTAGATAAAAGG
1 AA-AGATTAAATGCCTAACTGTGCATTTGGCAAAAAGGTGCCAATCATGCAAGTTAGATGAAAGG
*
7498083 TTAAAGGCCTTTGGGTA
65 TTAAATGCCTTTGGGTA
* * * * * * *
7498100 AAATATTAAACGTCTAACTGTGCATTTGGCAGAAATGTGCTAATCATGC---TTAGATGAAATGT
1 AAAGATTAAATGCCTAACTGTGCATTTGGCAAAAAGGTGCCAATCATGCAAGTTAGATGAAAGGT
*
7498162 TAAATGCCTCTGGGTA
66 TAAATGCCTTTGGGTA
* * *
7498178 AAAGATTAAACGCCTAACTGCGCATTTGGCAAAAAGGTGCCAATCATGTAAGTTAGATGAAAGGT
1 AAAGATTAAATGCCTAACTGTGCATTTGGCAAAAAGGTGCCAATCATGCAAGTTAGATGAAAGGT
*
7498243 TAAATACCTTTGGGTA
66 TAAATGCCTTTGGGTA
* * * * *
7498259 AAAGATTAAACT-CTTAACTATGCAGTT-GTAATAAAGGTGCCAATCATACAAGTTAGA-GAAAT
1 AAAGATTAAA-TGCCTAACTGTGCATTTGGCAA-AAAGGTGCCAATCATGCAAGTTAGATGAAA-
*
7498321 GGTTAAATGCCTTTAGGTA
63 GGTTAAATGCCTTTGGGTA
* * * * * ** * *
7498340 AAAGATTAAACGCCTAACTCTGCATTTGACAGAATGGTGCCAATCACACAAGCTAGATGAAAAGT
1 AAAGATTAAATGCCTAACTGTGCATTTGGCAAAAAGGTGCCAATCATGCAAGTTAGATGAAAGGT
*
7498405 TAAATACCTTTGGGTA
66 TAAATGCCTTTGGGTA
* * * ** * *
7498421 AAAGATTAAATTCCTAATTGTGCATTTGGCATATAA-GTGTTAATAATGCAAGTTAGATAAAAGG
1 AAAGATTAAATGCCTAACTGTGCATTTGGCA-AAAAGGTGCCAATCATGCAAGTTAGATGAAAGG
*
7498485 TTAAATGCCTTTGGATA
65 TTAAATGCCTTTGGGTA
* * * * *
7498502 AAAGATTAAATGCCTAACTGTGCATTTGGCAGAAAGGTACCAATAATGCAAGTTAGATAAAAGTT
1 AAAGATTAAATGCCTAACTGTGCATTTGGCAAAAAGGTGCCAATCATGCAAGTTAGATGAAAGGT
*
7498567 TAAATGCCTTTGGATA
66 TAAATGCCTTTGGGTA
* * *
7498583 AAAGATTAAATGCCTAACTGTGCATTTGG-AAAAAGGTTGCCAATAATGCAGGTTAGAGGAAAGG
1 AAAGATTAAATGCCTAACTGTGCATTTGGCAAAAAGG-TGCCAATCATGCAAGTTAGATGAAAGG
*
7498647 TTAAATTCCTTT
65 TTAAATGCCTTT
7498659 AGATGAAAGA
Statistics
Matches: 672, Mismatches: 102, Indels: 42
0.82 0.12 0.05
Matches are distributed among these distances:
74 52 0.08
75 10 0.01
76 1 0.00
77 3 0.00
78 70 0.10
79 1 0.00
80 27 0.04
81 501 0.75
82 7 0.01
ACGTcount: A:0.38, C:0.13, G:0.21, T:0.29
Consensus pattern (81 bp):
AAAGATTAAATGCCTAACTGTGCATTTGGCAAAAAGGTGCCAATCATGCAAGTTAGATGAAAGGT
TAAATGCCTTTGGGTA
Found at i:7504439 original size:84 final size:84
Alignment explanation
Indices: 7504298--7504466 Score: 320
Period size: 84 Copynumber: 2.0 Consensus size: 84
7504288 AATAAATGAA
*
7504298 TGATTTATTTGATATTTAAGAAAATTAGCTTTTGAATGGTATGTTGAATATGAGTTTTTATTGCG
1 TGATTTATTTGATATTTAAGAAAATTAGCTTTTGAATGGAATGTTGAATATGAGTTTTTATTGCG
7504363 GTTTATTAGTAGATTTGAC
66 GTTTATTAGTAGATTTGAC
*
7504382 TGATTTATTTGATATTTAAGAAAATTAGCTTTTGAATGGAATGTTGAATATGAGTTTTTATTGTG
1 TGATTTATTTGATATTTAAGAAAATTAGCTTTTGAATGGAATGTTGAATATGAGTTTTTATTGCG
7504447 GTTTATTAGTAGATTTGAC
66 GTTTATTAGTAGATTTGAC
7504466 T
1 T
7504467 TGTCAAAGAA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 83 1.00
ACGTcount: A:0.29, C:0.03, G:0.20, T:0.48
Consensus pattern (84 bp):
TGATTTATTTGATATTTAAGAAAATTAGCTTTTGAATGGAATGTTGAATATGAGTTTTTATTGCG
GTTTATTAGTAGATTTGAC
Found at i:7505449 original size:81 final size:80
Alignment explanation
Indices: 7505314--7506149 Score: 956
Period size: 81 Copynumber: 10.3 Consensus size: 80
7505304 TAAAATGAAT
* * * *
7505314 GATTAAACGCCTAACTGTTCATTTGGAAGAAATGTGCCAATCATGCAAGTTAGATGAAAGGTTAA
1 GATTAAATGCCTAACTGTGCATTTGGCAGAAATGT-TCAATCATGCAAGTTAGATGAAAGGTTAA
7505379 ATGCCTTTGGGTAAAA
65 ATGCCTTTGGGTAAAA
* * * * *
7505395 GATTAAATGCCTAACTGTGCATTTGGTAGAAAGGTTCTAATCAGGCAAGTTAGATAAAAGGCTAA
1 GATTAAATGCCTAACTGTGCATTTGGCAGAAATGTTC-AATCATGCAAGTTAGATGAAAGGTTAA
*
7505460 ATGCCTTTAGGTAAAA
65 ATGCCTTTGGGTAAAA
* * * * * *
7505476 GATTAAACGCCTAACTGTGCATTTGGCAGAAAGGTTATAATTATGTAAGTTAAATGAAAGGTTAA
1 GATTAAATGCCTAACTGTGCATTTGGCAGAAATGTT-CAATCATGCAAGTTAGATGAAAGGTTAA
* *
7505541 ATGCATTTAGGTAAAA
65 ATGCCTTTGGGTAAAA
** * * *
7505557 GATTAAACACCTAACTATGCATTTGGTAGAAATGTGTCAATCATACAAGTTAGATGAAAGGTTAA
1 GATTAAATGCCTAACTGTGCATTTGGCAGAAATGT-TCAATCATGCAAGTTAGATGAAAGGTTAA
7505622 ATGCCTTTGGGTAAAA
65 ATGCCTTTGGGTAAAA
* * * *
7505638 GATTAAACGCCTAATTGTGCATTTGACAGAAAAGTATCAATCATGCAAGTTAGATGAAAGGTTAA
1 GATTAAATGCCTAACTGTGCATTTGGCAGAAATGT-TCAATCATGCAAGTTAGATGAAAGGTTAA
7505703 ATGCCTTTGGGTAAAA
65 ATGCCTTTGGGTAAAA
* ** * * *
7505719 GAATAAACACCTAACTGTGCATTTGGCAGAAATGTGCCAACCATGCTAGTTAGATGAAAGGTTAA
1 GATTAAATGCCTAACTGTGCATTTGGCAGAAATGT-TCAATCATGCAAGTTAGATGAAAGGTTAA
7505784 ATGCCTTTGGGTAAAA
65 ATGCCTTTGGGTAAAA
* *
7505800 TATTAAATGCCTAACTGTGCATTTGGCAGAAATGTGTCAATCATGCAGGTTAGATGAAAGGTTAA
1 GATTAAATGCCTAACTGTGCATTTGGCAGAAATGT-TCAATCATGCAAGTTAGATGAAAGGTTAA
*
7505865 ATACCTTTTGGGTAAAA
65 ATGCC-TTTGGGTAAAA
* * * ** * * * * * * *
7505882 AATTAATTTCCTAACTACGCATTTGGTA-AGAAGGTGCCAATAATACAGGTTAGATGAAATGTTA
1 GATTAAATGCCTAACTGTGCATTTGGCAGA-AATGT-TCAATCATGCAAGTTAGATGAAAGGTTA
*
7505946 AATGCCTTTGGATAAAA
64 AATGCCTTTGGGTAAAA
* * * * * * *
7505963 GATTAAATTCCTAACTGTGCATTTGGCATAAATATGCCAATAATGCAAATTAGATAAAAGGTTAA
1 GATTAAATGCCTAACTGTGCATTTGGCAGAAATGT-TCAATCATGCAAGTTAGATGAAAGGTTAA
*
7506028 ATGCCTTTGGATAAAA
65 ATGCCTTTGGGTAAAA
* * *
7506044 GATTAAATGCCTAACTGTACATTTGGAAGAAATGTGTCAATAATGCAAGTTAGATGAAAGGTTAA
1 GATTAAATGCCTAACTGTGCATTTGGCAGAAATGT-TCAATCATGCAAGTTAGATGAAAGGTTAA
*
7506109 ATGCCTTTAGTGG-GAAA
65 ATGCCTTT-G-GGTAAAA
* **
7506126 GATTAAATGCTTAAGAGTGCATTT
1 GATTAAATGCCTAACTGTGCATTT
7506150 TAACATAAAC
Statistics
Matches: 652, Mismatches: 95, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
80 1 0.00
81 557 0.85
82 93 0.14
83 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (80 bp):
GATTAAATGCCTAACTGTGCATTTGGCAGAAATGTTCAATCATGCAAGTTAGATGAAAGGTTAAA
TGCCTTTGGGTAAAA
Found at i:7515888 original size:14 final size:14
Alignment explanation
Indices: 7515869--7515895 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7515859 TACAACCCTT
7515869 TGAGTATTGATACA
1 TGAGTATTGATACA
7515883 TGAGTATTGATAC
1 TGAGTATTGATAC
7515896 TATTTGCTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.37
Consensus pattern (14 bp):
TGAGTATTGATACA
Found at i:7517305 original size:22 final size:22
Alignment explanation
Indices: 7517277--7517349 Score: 146
Period size: 22 Copynumber: 3.3 Consensus size: 22
7517267 GCTCCCGTAT
7517277 GATGTACCATATAAATTGGTAC
1 GATGTACCATATAAATTGGTAC
7517299 GATGTACCATATAAATTGGTAC
1 GATGTACCATATAAATTGGTAC
7517321 GATGTACCATATAAATTGGTAC
1 GATGTACCATATAAATTGGTAC
7517343 GATGTAC
1 GATGTAC
7517350 TAGTTTCTTA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (22 bp):
GATGTACCATATAAATTGGTAC
Found at i:7530771 original size:11 final size:11
Alignment explanation
Indices: 7530757--7530783 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7530747 AAAAAACGCA
7530757 AAAAAGAAAAG
1 AAAAAGAAAAG
7530768 AAAAAGAAAAG
1 AAAAAGAAAAG
7530779 AAAAA
1 AAAAA
7530784 AAGAAAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:7530784 original size:18 final size:19
Alignment explanation
Indices: 7530729--7530809 Score: 55
Period size: 19 Copynumber: 4.4 Consensus size: 19
7530719 AAAGAACGAG
* *
7530729 AGAAAAAT-AAATAAAAGA
1 AGAAAAATGAAAGAAAAAA
*
7530747 A-AAAAACGCAAA-AAAGAAA
1 AGAAAAATG-AAAGAAA-AAA
7530766 AGAAAAA-GAAAAGAAAAAA
1 AGAAAAATG-AAAGAAAAAA
* *
7530785 AGAAAAATGAATG-AATAA
1 AGAAAAATGAAAGAAAAAA
7530803 AGAAAAA
1 AGAAAAA
7530810 AGCGTTTAGG
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
17 5 0.10
18 15 0.29
19 23 0.44
20 9 0.17
ACGTcount: A:0.78, C:0.02, G:0.14, T:0.06
Consensus pattern (19 bp):
AGAAAAATGAAAGAAAAAA
Found at i:7531362 original size:24 final size:25
Alignment explanation
Indices: 7531327--7531376 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
7531317 AAGTAAGGGG
7531327 AAACATTCTTCAAAATT-ATTCATC
1 AAACATTCTTCAAAATTCATTCATC
* *
7531351 AAACATTTTTCAAAATTCTTTCATC
1 AAACATTCTTCAAAATTCATTCATC
7531376 A
1 A
7531377 TTCAAAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (25 bp):
AAACATTCTTCAAAATTCATTCATC
Found at i:7531403 original size:42 final size:43
Alignment explanation
Indices: 7531335--7531416 Score: 132
Period size: 42 Copynumber: 1.9 Consensus size: 43
7531325 GGAAACATTC
*
7531335 TTCAAAATTATTCATCAAACATTTTTCAAAA-TTCTTTCATCA
1 TTCAAAATTATTCATAAAACATTTTTCAAAACTTCTTTCATCA
7531377 TTCAAAATTATTTCATAAAACA-TTTTCAAAACTTCTTTCA
1 TTCAAAATTA-TTCATAAAACATTTTTCAAAACTTCTTTCA
7531417 CCTTTTGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
42 19 0.51
43 18 0.49
ACGTcount: A:0.39, C:0.18, G:0.00, T:0.43
Consensus pattern (43 bp):
TTCAAAATTATTCATAAAACATTTTTCAAAACTTCTTTCATCA
Found at i:7533947 original size:6 final size:6
Alignment explanation
Indices: 7533947--7534012 Score: 123
Period size: 6 Copynumber: 11.0 Consensus size: 6
7533937 CGAAAAAGAA
*
7533947 AAAATG AAAACG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
7533995 AAAATG AAAATG AAAATG
1 AAAATG AAAATG AAAATG
7534013 GGGCTAGGTT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 58 1.00
ACGTcount: A:0.67, C:0.02, G:0.17, T:0.15
Consensus pattern (6 bp):
AAAATG
Found at i:7533954 original size:20 final size:20
Alignment explanation
Indices: 7533929--7534004 Score: 70
Period size: 18 Copynumber: 4.0 Consensus size: 20
7533919 ATGAGAGAAG
*
7533929 AATGAAATCGAAAAAGAAAA
1 AATGAAAACGAAAAAGAAAA
*
7533949 AATGAAAACGAAAATG--AA
1 AATGAAAACGAAAAAGAAAA
* *
7533967 AATGAAAATGAAAATG--AA
1 AATGAAAACGAAAAAGAAAA
* *
7533985 AATGAAAATGAAAATGAAAA
1 AATGAAAACGAAAAAGAAAA
7534005 TGAAAATGGG
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 35 0.69
20 16 0.31
ACGTcount: A:0.68, C:0.03, G:0.16, T:0.13
Consensus pattern (20 bp):
AATGAAAACGAAAAAGAAAA
Found at i:7534563 original size:2 final size:2
Alignment explanation
Indices: 7534556--7534581 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7534546 TCTAGATGAA
7534556 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7534582 TGAGTAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7536337 original size:15 final size:15
Alignment explanation
Indices: 7536317--7536345 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7536307 CCAATTTGTT
7536317 TTTAAAATTATTTTC
1 TTTAAAATTATTTTC
7536332 TTTAAAATTATTTT
1 TTTAAAATTATTTT
7536346 AAAAGATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTAAAATTATTTTC
Found at i:7538924 original size:54 final size:54
Alignment explanation
Indices: 7538854--7539120 Score: 408
Period size: 54 Copynumber: 4.9 Consensus size: 54
7538844 GTGCAAAAAT
7538854 GGTTATTCATCCACATAGGATGAATTCCGTGAAATACACACTTAGTGCCGAAAC
1 GGTTATTCATCCACATAGGATGAATTCCGTGAAATACACACTTAGTGCCGAAAC
* * *
7538908 GGTTATTCATCCACATAGGCTGAATTCCGTGAAATGCACACTTAGTTCCGAAAC
1 GGTTATTCATCCACATAGGATGAATTCCGTGAAATACACACTTAGTGCCGAAAC
* * *
7538962 GATTATTCGTCCACATAGGATGAATTCCGTGAAATACACACTTAGTGCCGAAAT
1 GGTTATTCATCCACATAGGATGAATTCCGTGAAATACACACTTAGTGCCGAAAC
* * *
7539016 GGTTATTTATCCATATAGGATGAATTCCGTGAAATCCACACTTAGTGCCGAAAC
1 GGTTATTCATCCACATAGGATGAATTCCGTGAAATACACACTTAGTGCCGAAAC
** * * *
7539070 AATTATTCATCCACATATGATGAATTTCGTGAAATACACACTTAGTACCGA
1 GGTTATTCATCCACATAGGATGAATTCCGTGAAATACACACTTAGTGCCGA
7539121 TTTGGTAATC
Statistics
Matches: 190, Mismatches: 23, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 190 1.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.28
Consensus pattern (54 bp):
GGTTATTCATCCACATAGGATGAATTCCGTGAAATACACACTTAGTGCCGAAAC
Found at i:7539650 original size:21 final size:21
Alignment explanation
Indices: 7539624--7539677 Score: 108
Period size: 21 Copynumber: 2.6 Consensus size: 21
7539614 CGATGTTGCT
7539624 TGGTATCGATACCCCTTATCA
1 TGGTATCGATACCCCTTATCA
7539645 TGGTATCGATACCCCTTATCA
1 TGGTATCGATACCCCTTATCA
7539666 TGGTATCGATAC
1 TGGTATCGATAC
7539678 TACCCCATCG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (21 bp):
TGGTATCGATACCCCTTATCA
Found at i:7543251 original size:15 final size:15
Alignment explanation
Indices: 7543231--7543262 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
7543221 TAACTCCATT
7543231 AGAGCCATTCGATAC
1 AGAGCCATTCGATAC
7543246 AGAGCCATTCGATAC
1 AGAGCCATTCGATAC
7543261 AG
1 AG
7543263 GTTCGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.25, G:0.22, T:0.19
Consensus pattern (15 bp):
AGAGCCATTCGATAC
Found at i:7546028 original size:54 final size:54
Alignment explanation
Indices: 7545808--7546028 Score: 291
Period size: 54 Copynumber: 4.1 Consensus size: 54
7545798 TTTGCACATC
*
7545808 TAGTCTCGAAACGGTTATTCATCCACATAGGATGAATT-TCGTGAAATACACACT
1 TAGTGTCGAAACGGTTATTCATCCACATAGGATGAATTCT-GTGAAATACACACT
* * * * * *
7545862 TAGTGCCGAAATGGTTATTCGTCCACATAGGATGAATTCTGGGAAATGCATACT
1 TAGTGTCGAAACGGTTATTCATCCACATAGGATGAATTCTGTGAAATACACACT
* * * *
7545916 TAGTGTCGAAACGGTTATTCATCCACATATGATGAATTATATGAAATACATACT
1 TAGTGTCGAAACGGTTATTCATCCACATAGGATGAATTCTGTGAAATACACACT
* * * *
7545970 TAGTGTCGAAACGGTTATTCATCCATATGGGATGAATTCTGTGCAATTCACACT
1 TAGTGTCGAAACGGTTATTCATCCACATAGGATGAATTCTGTGAAATACACACT
7546024 TAGTG
1 TAGTG
7546029 CCAATTTGGT
Statistics
Matches: 143, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
54 142 0.99
55 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32
Consensus pattern (54 bp):
TAGTGTCGAAACGGTTATTCATCCACATAGGATGAATTCTGTGAAATACACACT
Found at i:7547455 original size:26 final size:26
Alignment explanation
Indices: 7547423--7547478 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
7547413 TACAACAAAG
7547423 ACCCTTGATCTTACTCCAACAAATAT
1 ACCCTTGATCTTACTCCAACAAATAT
7547449 ACCCTTGATCTTACTCCAACAAATAT
1 ACCCTTGATCTTACTCCAACAAATAT
7547475 ACCC
1 ACCC
7547479 AAACCCTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.34, G:0.04, T:0.29
Consensus pattern (26 bp):
ACCCTTGATCTTACTCCAACAAATAT
Found at i:7548046 original size:6 final size:5
Alignment explanation
Indices: 7547978--7548045 Score: 57
Period size: 5 Copynumber: 13.2 Consensus size: 5
7547968 GGGAAACGAG
* * *
7547978 AGAAA AAAAA ATAAA AGAAA ACAAA AGAAGA A-AAGA AGAAA ATGAAA
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAA-A AGAA-A AGAAA A-GAAA
* *
7548025 GGAAA GGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA A
7548046 AATAGAAACA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
5 45 0.85
6 8 0.15
ACGTcount: A:0.76, C:0.01, G:0.19, T:0.03
Consensus pattern (5 bp):
AGAAA
Found at i:7548650 original size:25 final size:24
Alignment explanation
Indices: 7548605--7548652 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
7548595 ACATTCTTCA
*
7548605 AAATTCTTCATCGAATATTTTTCG
1 AAATTCTTCATCAAATATTTTTCG
* *
7548629 AAATTCTTTCATTAAATTTTTTTC
1 AAATTC-TTCATCAAATATTTTTC
7548653 AAAGTTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.29, C:0.15, G:0.04, T:0.52
Consensus pattern (24 bp):
AAATTCTTCATCAAATATTTTTCG
Found at i:7549489 original size:201 final size:201
Alignment explanation
Indices: 7549144--7549546 Score: 788
Period size: 201 Copynumber: 2.0 Consensus size: 201
7549134 AAAAAGAATT
7549144 TCATACAATTCATAAAATTCCTTAAGATAGTTGCATTCATACATGTACATATTTTCATAAACCTT
1 TCATACAATTCATAAAATTCCTTAAGATAGTTGCATTCATACATGTACATATTTTCATAAACCTT
7549209 TTAGGAAAAAAAGATCAATGATAACTATATCACTTCAATACGAAGGAACATTATTATCAACAAAC
66 TTAGGAAAAAAAGATCAATGATAACTATATCACTTCAATACGAAGGAACATTATTATCAACAAAC
7549274 ATGATATTCTCAAACGAAGTGTAAATCATCAAGCAATGATTAAAATTCCTCAATACGGTGAAATA
131 ATGATATTCTCAAACGAAGTGTAAATCATCAAGCAATGATTAAAATTCCTCAATACGGTGAAATA
*
7549339 GATCGC
196 AATCGC
7549345 TCATACAATTCATAAAATTCCTTAAGATAGTTGCATTCATACATGTACATATTTTCATAAACCTT
1 TCATACAATTCATAAAATTCCTTAAGATAGTTGCATTCATACATGTACATATTTTCATAAACCTT
7549410 TTAGGAAAAAAAGATCAATGATAACTATATCACTTCAATACGAAGGAACATTATTATCAACAAAC
66 TTAGGAAAAAAAGATCAATGATAACTATATCACTTCAATACGAAGGAACATTATTATCAACAAAC
*
7549475 ATGATATTCTCAAACGAAGTGTAAATCATCAAGCAATGATTAAACTTCCTCAATACGGTGAAATA
131 ATGATATTCTCAAACGAAGTGTAAATCATCAAGCAATGATTAAAATTCCTCAATACGGTGAAATA
7549540 AATCGC
196 AATCGC
7549546 T
1 T
7549547 TAATTTTTTT
Statistics
Matches: 200, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
201 200 1.00
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (201 bp):
TCATACAATTCATAAAATTCCTTAAGATAGTTGCATTCATACATGTACATATTTTCATAAACCTT
TTAGGAAAAAAAGATCAATGATAACTATATCACTTCAATACGAAGGAACATTATTATCAACAAAC
ATGATATTCTCAAACGAAGTGTAAATCATCAAGCAATGATTAAAATTCCTCAATACGGTGAAATA
AATCGC
Found at i:7552387 original size:2 final size:2
Alignment explanation
Indices: 7552380--7552410 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7552370 TATTATTTTC
7552380 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7552411 TAAATACAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7552714 original size:18 final size:20
Alignment explanation
Indices: 7552679--7552715 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7552669 ATTTTCATAG
*
7552679 TTTTTTATATAATGAAATTA
1 TTTTTAATATAATGAAATTA
7552699 TTTTTAATA-AAT-AAATT
1 TTTTTAATATAATGAAATT
7552716 CTCATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.31
19 3 0.19
20 8 0.50
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
TTTTTAATATAATGAAATTA
Found at i:7554976 original size:3 final size:3
Alignment explanation
Indices: 7554968--7555006 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
7554958 CCACACCTCC
*
7554968 ATT ATT ATT ATT ATT ATT A-T ATT GTT ATT A-T ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
7555007 AGAAAGCAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
2 4 0.12
3 28 0.88
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:7554995 original size:11 final size:11
Alignment explanation
Indices: 7554968--7555006 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
7554958 CCACACCTCC
7554968 ATTATTATTATT
1 ATTATTA-TATT
7554980 ATTATTATATT
1 ATTATTATATT
*
7554991 GTTATTATATT
1 ATTATTATATT
7555002 ATTAT
1 ATTAT
7555007 AGAAAGCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 18 0.72
12 7 0.28
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (11 bp):
ATTATTATATT
Found at i:7562912 original size:39 final size:39
Alignment explanation
Indices: 7562807--7562951 Score: 112
Period size: 39 Copynumber: 3.7 Consensus size: 39
7562797 CATAAGGACA
*** * **
7562807 TGCGATAAGGACTTACCCCGTGCACAAAGCAAAGGAG-C
1 TGCGATAAGGACTTACCCTAAGCACAAAACCGAGGAGTC
* *
7562845 TTGCGATAAGGACTTACCCTAAGTACAAAACCGATGAGTC
1 -TGCGATAAGGACTTACCCTAAGCACAAAACCGAGGAGTC
* * ** * *
7562885 TGCGGTAAGGTCTTACCCTGTGCACAAAGCCTAGGAGTC
1 TGCGATAAGGACTTACCCTAAGCACAAAACCGAGGAGTC
* * * *
7562924 TGCAATTAGGATTTACCCTGAGCACAAA
1 TGCGATAAGGACTTACCCTAAGCACAAA
7562952 GTCGATGAGC
Statistics
Matches: 83, Mismatches: 22, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
39 82 0.99
40 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.23, T:0.21
Consensus pattern (39 bp):
TGCGATAAGGACTTACCCTAAGCACAAAACCGAGGAGTC
Found at i:7562941 original size:78 final size:78
Alignment explanation
Indices: 7562807--7562978 Score: 193
Period size: 78 Copynumber: 2.2 Consensus size: 78
7562797 CATAAGGACA
* * *
7562807 TGCGATAAGGACTTACCCCGTGCACAAAGCAAAGGAGCTTGCGATAAGGACTTACCCTAAGTACA
1 TGCGGTAAGGACTTACCCCGTGCACAAAGCAAAGGAGCTTGCAATAAGGACTTACCCTAAGCACA
*
7562872 AAACCGATGAGTC
66 AAACCGATGAGCC
* * ** * * *
7562885 TGCGGTAAGGTCTTACCCTGTGCACAAAGCCTAGGAG-TCTGCAATTAGGATTTACCCTGAGCAC
1 TGCGGTAAGGACTTACCCCGTGCACAAAGCAAAGGAGCT-TGCAATAAGGACTTACCCTAAGCAC
**
7562949 AAAGTCGATGAGCC
65 AAAACCGATGAGCC
**
7562963 TATGGTAAGGACTTAC
1 TGCGGTAAGGACTTAC
7562979 GAGTCATAGA
Statistics
Matches: 77, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
77 1 0.01
78 76 0.99
ACGTcount: A:0.31, C:0.23, G:0.24, T:0.22
Consensus pattern (78 bp):
TGCGGTAAGGACTTACCCCGTGCACAAAGCAAAGGAGCTTGCAATAAGGACTTACCCTAAGCACA
AAACCGATGAGCC
Found at i:7563831 original size:30 final size:30
Alignment explanation
Indices: 7563797--7563858 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
7563787 TTTAGATCCG
* * *
7563797 AATTTAATTAAAATTTCACTTTGGTCCTCA
1 AATTTAATTAAAATTTCAATTTAGTCATCA
7563827 AATTTAATTAAAATTTCAATTTAGTCATCA
1 AATTTAATTAAAATTTCAATTTAGTCATCA
7563857 AA
1 AA
7563859 AGAATTTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.40, C:0.13, G:0.05, T:0.42
Consensus pattern (30 bp):
AATTTAATTAAAATTTCAATTTAGTCATCA
Found at i:7574026 original size:4 final size:4
Alignment explanation
Indices: 7574017--7574593 Score: 1154
Period size: 4 Copynumber: 144.2 Consensus size: 4
7574007 CTTCTGGTGA
7574017 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7574065 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7574113 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7574161 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7574209 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7574257 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7574305 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7574353 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7574401 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7574449 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7574497 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7574545 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
7574593 T
1 T
7574594 TTACCATTTT
Statistics
Matches: 573, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 573 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:7580327 original size:30 final size:31
Alignment explanation
Indices: 7580291--7580360 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 31
7580281 TGACTCGTTG
* *
7580291 ACCCGTCTGCTCGATCTGATACACTTAC-CA
1 ACCCGTCTGCTCGATCCGATACACCTACTCA
* *
7580321 ACCCGTCTGCTTGATCCGATTCACCTACTCA
1 ACCCGTCTGCTCGATCCGATACACCTACTCA
*
7580352 ACCTGTCTG
1 ACCCGTCTG
7580361 ATCTGACCCG
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 24 0.71
31 10 0.29
ACGTcount: A:0.20, C:0.37, G:0.14, T:0.29
Consensus pattern (31 bp):
ACCCGTCTGCTCGATCCGATACACCTACTCA
Found at i:7581065 original size:32 final size:31
Alignment explanation
Indices: 7581029--7581090 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
7581019 ATTTAAATAT
7581029 TCTAACTTCACGAAATCT-ATTTTATCGTATAC
1 TCTAACTTC-CGAAATCTGA-TTTATCGTATAC
* *
7581061 TCTAACTTCCGATATTTGATTTATCGTATA
1 TCTAACTTCCGAAATCTGATTTATCGTATA
7581091 TTCTGGCATG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
31 17 0.63
32 10 0.37
ACGTcount: A:0.29, C:0.19, G:0.08, T:0.44
Consensus pattern (31 bp):
TCTAACTTCCGAAATCTGATTTATCGTATAC
Found at i:7581163 original size:71 final size:71
Alignment explanation
Indices: 7581075--7581258 Score: 314
Period size: 73 Copynumber: 2.5 Consensus size: 71
7581065 ACTTCCGATA
* *
7581075 TTTGATTTATCGTATATTCTGGCATGATCTTTGGTTACCGTATTTATCTATCTGGTATTACAATG
1 TTTGATTTACCGAATATTCTGGCATGATCTTTGGTTACCGTATTTATCTATCTGGTATTACAATG
7581140 CCATGT
66 CCATGT
7581146 TTTGATTTACCGAATATTCTGGCATGATCTTTGGTGTTACCGTATTTATCTATCTGGTATTACAA
1 TTTGATTTACCGAATATTCTGGCATGATCTTT-G-GTTACCGTATTTATCTATCTGGTATTACAA
7581211 TGCCATGT
64 TGCCATGT
*
7581219 TTTGATTTACCGAATATTTTTGGCATGATCTTTGGTTACC
1 TTTGATTTACCGAATA-TTCTGGCATGATCTTTGGTTACC
7581259 TTATATTCTG
Statistics
Matches: 107, Mismatches: 3, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
71 30 0.28
72 7 0.07
73 55 0.51
74 15 0.14
ACGTcount: A:0.21, C:0.16, G:0.17, T:0.46
Consensus pattern (71 bp):
TTTGATTTACCGAATATTCTGGCATGATCTTTGGTTACCGTATTTATCTATCTGGTATTACAATG
CCATGT
Found at i:7581258 original size:29 final size:28
Alignment explanation
Indices: 7581225--7581287 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
7581215 ATGTTTTGAT
*
7581225 TTACCGAATATTTTTGGCATGATCTTTGG
1 TTACCGAATA-TTCTGGCATGATCTTTGG
**
7581254 TTACCTTATATTCTGGCATGATCTTTGG
1 TTACCGAATATTCTGGCATGATCTTTGG
7581282 TTACCG
1 TTACCG
7581288 TATTTATCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 22 0.73
29 8 0.27
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.44
Consensus pattern (28 bp):
TTACCGAATATTCTGGCATGATCTTTGG
Found at i:7581810 original size:23 final size:24
Alignment explanation
Indices: 7581773--7581832 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 24
7581763 CACGTGTGAT
7581773 TATT-TAAA-TTA-TTTAT-TAAA
1 TATTATAAATTTATTTTATATAAA
*
7581793 TATTATAAATTTATTTTATATTAA
1 TATTATAAATTTATTTTATATAAA
7581817 T-TTATAATATTTATTT
1 TATTATAA-ATTTATTT
7581833 AGTTTTAACT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
20 4 0.12
21 4 0.12
22 3 0.09
23 11 0.32
24 12 0.35
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TATTATAAATTTATTTTATATAAA
Found at i:7581833 original size:23 final size:22
Alignment explanation
Indices: 7581773--7581833 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
7581763 CACGTGTGAT
7581773 TATT-TAAA-TTATTTATTAAA
1 TATTATAAATTTATTTATTAAA
*
7581793 TATTATAAATTTATTTTATATTAA
1 TATTATAAATTTA-TTTAT-TAAA
7581817 T-TTATAATATTTATTTA
1 TATTATAA-ATTTATTTA
7581834 GTTTTAACTA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
20 4 0.11
21 4 0.11
22 3 0.09
23 15 0.43
24 9 0.26
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
TATTATAAATTTATTTATTAAA
Found at i:7581845 original size:28 final size:26
Alignment explanation
Indices: 7581801--7581861 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 26
7581791 AATATTATAA
*
7581801 ATTTATTTTATATTAATTTATAATATTT
1 ATTTATTTTATACTAATTTA-AAT-TTT
7581829 ATTTAGTTTTA-ACTAATTTAAATTTT
1 ATTTA-TTTTATACTAATTTAAATTTT
7581855 ATATTAT
1 AT-TTAT
7581862 ATCATAGATA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
26 6 0.20
27 6 0.20
28 13 0.43
29 5 0.17
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (26 bp):
ATTTATTTTATACTAATTTAAATTTT
Found at i:7582942 original size:20 final size:18
Alignment explanation
Indices: 7582906--7582948 Score: 50
Period size: 20 Copynumber: 2.3 Consensus size: 18
7582896 AAATTTGTTT
7582906 TTAAATTTTTATAATTTG
1 TTAAATTTTTATAATTTG
* *
7582924 TTAAATATTATTATTATTTT
1 TTAAAT-TT-TTATAATTTG
7582944 TTAAA
1 TTAAA
7582949 AAATAATAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 6 0.29
19 2 0.10
20 13 0.62
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
TTAAATTTTTATAATTTG
Found at i:7583911 original size:22 final size:22
Alignment explanation
Indices: 7583886--7583934 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
7583876 ATGACTCTAT
7583886 GTGTAGCCTAAAAAAACTATAC
1 GTGTAGCCTAAAAAAACTATAC
7583908 GTGTAGCCTAAAAAAACTATAC
1 GTGTAGCCTAAAAAAACTATAC
7583930 GTGTA
1 GTGTA
7583935 AAACCCTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.24
Consensus pattern (22 bp):
GTGTAGCCTAAAAAAACTATAC
Found at i:7587068 original size:216 final size:215
Alignment explanation
Indices: 7586688--7588039 Score: 1165
Period size: 216 Copynumber: 6.3 Consensus size: 215
7586678 AGATTCTGGA
* * * * *
7586688 ACTTCATCTGGTGTGTTCAACGATGAAGACTCTTCAGAATCCAGTTCACAAGCAAATG-CTTCGT
1 ACTTCATCTGGTGTGTTCAGCGATGAAGACTCTTCAGAACCCACTTCAAAAG-AAACGACTTCGT
* * * * * *
7586752 ATGATAGATGTGAACGTAAAGGTTTCTAGGCTTCCAAACAACTCCTGTTGGTGGTTGCTAATAGG
65 ACGATGGATGTGAACGTAAAGATTTCTGGGCTTTCAAACAACACCTGTTGGTGGTTGCTAATAGG
* * * * *
7586817 -TGTTGTTTGAAAGCCTGGGAATCTTTCCTCTCACATCTCTAGGCACAAGACACCTCAAAACAAA
130 AT-TTGTTTGGAAGCATGAGAATCTTTCGT-TCACATCTCTAGGCACAAGACACCTCAAAACACA
* *
7586881 AAGACTGACGATTGCAAACGATG
193 AAGACTGACGATTGCAAACAACG
* * * * *
7586904 GCTTCATCTGATGTGTTCAGCTATGAAGACTCTTTAGAACCCACTTCAAAAGAAACGTCTTCGTA
1 ACTTCATCTGGTGTGTTCAGCGATGAAGACTCTTCAGAACCCACTTCAAAAGAAACGACTTCGTA
* * *
7586969 TGATGGATGTGAACGTAAAGATTTTTGGGCTTTCAAGCAACACCTGTTGGTGGTTGCTAATAGGA
66 CGATGGATGTGAACGTAAAGATTTCTGGGCTTTCAAACAACACCTGTTGGTGGTTGCTAATAGGA
* * * * *
7587034 TTTGTTAT-GAAGCCTGAGAATCTTTTCGCTCACATCTTTAGGCACAAGACACCTTAGAACACAA
131 TTTGTT-TGGAAGCATGAGAATC-TTTCGTTCACATCTCTAGGCACAAGACACCTCAAAACACAA
*
7587098 AGACCGACGATTGCAAACAACG
194 AGACTGACGATTGCAAACAACG
* * * * * * *
7587120 ACTTCATCTGATGTCTTCAGGGATGAAGAATCTTCAGAACCCACTTCAAAGGCAACGACTTTGTA
1 ACTTCATCTGGTGTGTTCAGCGATGAAGACTCTTCAGAACCCACTTCAAAAGAAACGACTTCGTA
* * * * ** *
7587185 CGATGGATTTGAACATAAAGATTTCTGGG-TTTCTGAACAATC-CTTGTTGGTAATTGCTATTAG
66 CGATGGATGTGAACGTAAAGATTTCTGGGCTTTC-AAACAA-CACCTGTTGGTGGTTGCTAATAG
* *
7587248 G-TGTTGTTTGGAAGCATGTGAATCTTTCTGTTCACGTCTCTAGGCACAAGACACCTCAAAACAC
129 GAT-TTGTTTGGAAGCATGAGAATCTTTC-GTTCACATCTCTAGGCACAAGACACCTCAAAACAC
* *
7587312 AAAGACTGACAATTGCAAACAATG
192 AAAGACTGACGATTGCAAACAACG
* * * * * *
7587336 ACTTCATCAGGTGTGTTCAGC-AGTGAAGACTCTTCAGGACCCACTTAAAAAGCAATGACTTTGT
1 ACTTCATCTGGTGTGTTCAGCGA-TGAAGACTCTTCAGAACCCACTTCAAAAGAAACGACTTCGT
* * * * *
7587400 ACGATGGATGTGAATGTAAAGATTTTTAGGCTTTCAAACAA-AGCTTGTTGGTGGTTACTAATAG
65 ACGATGGATGTGAACGTAAAGATTTCTGGGCTTTCAAACAACA-CCTGTTGGTGGTTGCTAATAG
* * * ** * *
7587464 GCA-TTGTTTGGAAGCATGAGAATCATTCCATTCATATCTCTAGGCGGAAGACACCTTAGAACAC
129 G-ATTTGTTTGGAAGCATGAGAATC-TTTCGTTCACATCTCTAGGCACAAGACACCTCAAAACAC
* * *
7587528 AGAGGCTGATGATTGCAAACAACG
192 AAAGACTGACGATTGCAAACAACG
* * * * *
7587552 AATTCATCTGGTGTGTTCAGCTATGAAGACTCTTCAGAACCCACTT-------TA--TCTTCGAA
1 ACTTCATCTGGTGTGTTCAGCGATGAAGACTCTTCAGAACCCACTTCAAAAGAAACGACTTCGTA
* * * * *
7587608 CGATGGATGTGAACGTAAAGATCTATGTGC-TTCTAAACAACGCCTG-T--TAGTTGCTAATAGG
66 CGATGGATGTGAACGTAAAGATTTCTGGGCTTTC-AAACAACACCTGTTGGTGGTTGCTAATAGG
* * * *
7587669 CA-TTGTTTGGAAGCATGAGAATCTTTCATTTCACATATTTAGGCACAAGAAACCTCAAAACACA
130 -ATTTGTTTGGAAGCATGAGAATCTTTC-GTTCACATCTCTAGGCACAAGACACCTCAAAACACA
* *
7587733 AAGATTGATGATTGCAAACAACG
193 AAGACTGACGATTGCAAACAACG
* * * * * *
7587756 ACTTCAT-TCGGTGTGTTCAGCAATGAAGACT-TCCAAAACTCACTTCAAAGGCTATA-GA-TTC
1 ACTTCATCT-GGTGTGTTCAGCGATGAAGACTCTTCAGAACCCACTTCAAAAG--AAACGACTTC
* * *** * ** *
7587817 GTACAATGGATGTGAACGAAAAGATTT-TCAATCTTCCAAACAATGCCTGTTGG-AG--G-T--T
63 GTACGATGGATGTGAACGTAAAGATTTCT-GGGCTTTCAAACAACACCTGTTGGTGGTTGCTAAT
* * *
7587875 AGG-TATTGTTTGGAAGCATGAGAATCTTTATGTTCACATCTCTATGCACAAGATACCTC-AAAC
127 AGGAT-TTGTTTGGAAGCATGAGAATCTTT-CGTTCACATCTCTAGGCACAAGACACCTCAAAAC
* * *
7587938 ACAAGGACTGGCGATTGCAAATAACG
190 ACAAAGACTGACGATTGCAAACAACG
* * * * *
7587964 ACTTCATCTGACATCTAGTGTGTTCAGTGATGAAGACTCTTCGGAGCCCACTTCAATAGCAACGA
1 ACTTCATCTG-------GTGTGTTCAGCGATGAAGACTCTTCAGAACCCACTTCAAAAGAAACGA
*
7588029 TTTCGTACGAT
59 CTTCGTACGAT
7588040 AATTATTTAA
Statistics
Matches: 929, Mismatches: 157, Indels: 100
0.78 0.13 0.08
Matches are distributed among these distances:
203 15 0.02
204 109 0.12
206 4 0.00
207 39 0.04
208 33 0.04
209 53 0.06
211 2 0.00
212 41 0.04
213 3 0.00
214 3 0.00
215 36 0.04
216 576 0.62
217 15 0.02
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (215 bp):
ACTTCATCTGGTGTGTTCAGCGATGAAGACTCTTCAGAACCCACTTCAAAAGAAACGACTTCGTA
CGATGGATGTGAACGTAAAGATTTCTGGGCTTTCAAACAACACCTGTTGGTGGTTGCTAATAGGA
TTTGTTTGGAAGCATGAGAATCTTTCGTTCACATCTCTAGGCACAAGACACCTCAAAACACAAAG
ACTGACGATTGCAAACAACG
Found at i:7587517 original size:432 final size:423
Alignment explanation
Indices: 7586688--7588039 Score: 1356
Period size: 432 Copynumber: 3.2 Consensus size: 423
7586678 AGATTCTGGA
* * * *
7586688 ACTTCATCTGGTGTGTTCAACGATGAAGACTCTTCAGAATCCAGTTCACAAGCAAATGCTTCGTA
1 ACTTCATCTGATGTGTTCAGCGATGAAGACTCTTCAGAACCCACTTCA-AAGC-AA-GCTTCGTA
* * * * * *
7586753 TGATAGATGTGAACGTAAAGGTTTCTAGGCTTCCAAACAACTCCTGTTGGTGGTTGCTAATAGGT
63 CGATGGATGTGAACGTAAAGATTTCTGGGCTTCTAAACAA-TCCTGTTGGTAGTTGCTAATAGGT
* * * * *
7586818 GTTGTTTGAAAGCCTGGGAATCTTTCCTCTCACATCTCTAGGCACAAGACACCTCAAAACAAAAA
127 GTTGTTTGGAAGCATGAGAATCTTT-CTTTCACATCTCTAGGCACAAGACACCTCAAAACACAAA
* * * *
7586883 GACTGACGATTGCAAACGATGGCTTCATCTGATGTGTTCAGCTATGAAGACTCTTTAGAACCCAC
191 GACTGACGATTGCAAACAATGACTTCATC-GGTGTGTTCAGC-ATGAAGACTCTTCAGAACCCAC
* * * * * *
7586948 TTCAAAAGAAACGTCTTCGTATGATGGATGTGAACGTAAAGATTTTTGGGCTTTCAAGCAACA-C
254 TTCAAAAGCAATGACTTCGTACGATGGATGTGAACGTAAAGATTTTTAGGCTTTCAAACAA-AGC
* * * *
7587012 CTGTTGGTGGTTGCTAATAGGATTTGTTAT-GAAGCCTGAGAATCTTTTCGCTCACATCTTTAGG
318 CTGTTGGTGGTT-CTAATAGGA-TTGTT-TGGAAGCATGAGAATCTTTACGTTCACATCTCTAGG
*
7587076 CACAAGACACCTTAGAACACAAAGACCGACGATTGCAAACAACG
380 CACAAGACACCTTAGAACACAAAGACTGACGATTGCAAACAACG
* * * *
7587120 ACTTCATCTGATGTCTTCAGGGATGAAGAATCTTCAGAACCCACTTCAAAGGCAACGACTTTGTA
1 ACTTCATCTGATGTGTTCAGCGATGAAGACTCTTCAGAACCCACTTCAAA-GCAA-G-CTTCGTA
* * * * * *
7587185 CGATGGATTTGAACATAAAGATTTCTGGGTTTCTGAACAATCCTTGTTGGTAATTGCTATTAGGT
63 CGATGGATGTGAACGTAAAGATTTCTGGGCTTCTAAACAATCC-TGTTGGTAGTTGCTAATAGGT
* *
7587250 GTTGTTTGGAAGCATGTGAATCTTTCTGTTCACGTCTCTAGGCACAAGACACCTCAAAACACAAA
127 GTTGTTTGGAAGCATGAGAATCTTTCT-TTCACATCTCTAGGCACAAGACACCTCAAAACACAAA
* *
7587315 GACTGACAATTGCAAACAATGACTTCATCAGGTGTGTTCAGCAGTGAAGACTCTTCAGGACCCAC
191 GACTGACGATTGCAAACAATGACTTCATC-GGTGTGTTCAGCA-TGAAGACTCTTCAGAACCCAC
* * * *
7587380 TTAAAAAGCAATGACTTTGTACGATGGATGTGAATGTAAAGATTTTTAGGCTTTCAAACAAAGCT
254 TTCAAAAGCAATGACTTCGTACGATGGATGTGAACGTAAAGATTTTTAGGCTTTCAAACAAAGCC
* * * * *
7587445 TGTTGGTGGTTACTAATAGGCATTGTTTGGAAGCATGAGAATCATTCCATTCATATCTCTAGGCG
319 TGTTGGTGGTT-CTAATAGG-ATTGTTTGGAAGCATGAGAATCTTTACGTTCACATCTCTAGGCA
* * * *
7587510 GAAGACACCTTAGAACACAGAGGCTGATGATTGCAAACAACG
382 CAAGACACCTTAGAACACAAAGACTGACGATTGCAAACAACG
* * * * * *
7587552 AATTCATCTGGTGTGTTCAGCTATGAAGACTCTTCAGAACCCACTT------TATCTTCGAACGA
1 ACTTCATCTGATGTGTTCAGCGATGAAGACTCTTCAGAACCCACTTCAAAGCAAGCTTCGTACGA
* * * * **
7587611 TGGATGTGAACGTAAAGATCTATGTGCTTCTAAACAACGCCTG-T--TAGTTGCTAATAGGCATT
66 TGGATGTGAACGTAAAGATTTCTGGGCTTCTAAACAA-TCCTGTTGGTAGTTGCTAATAGGTGTT
* * * *
7587673 GTTTGGAAGCATGAGAATCTTTCATTTCACATATTTAGGCACAAGAAACCTCAAAACACAAAGAT
130 GTTTGGAAGCATGAGAATCTTTC-TTTCACATCTCTAGGCACAAGACACCTCAAAACACAAAGAC
* * * * *
7587738 TGATGATTGCAAACAACGACTTCATTCGGTGTGTTCAGCAATGAAGACT-TCCAAAACTCACTTC
194 TGACGATTGCAAACAATGACTTCA-TCGGTGTGTTCAGC-ATGAAGACTCTTCAGAACCCACTTC
* * * * * ** * *
7587802 AAAGGCTATAGA-TTCGTACAATGGATGTGAACGAAAAGATTTTCAATCTTCCAAACAATGCCTG
257 AAAAGCAAT-GACTTCGTACGATGGATGTGAACGTAAAGATTTTTAGGCTTTCAAACAAAGCCTG
* * *
7587866 TTGGAGG---T--TAGGTATTGTTTGGAAGCATGAGAATCTTTATGTTCACATCTCTATGCACAA
321 TTGGTGGTTCTAATAGG-ATTGTTTGGAAGCATGAGAATCTTTACGTTCACATCTCTAGGCACAA
* * * * *
7587926 GATACCTCA-AACACAAGGACTGGCGATTGCAAATAACG
385 GACACCTTAGAACACAAAGACTGACGATTGCAAACAACG
* * *
7587964 ACTTCATCTGACATCTAGTGTGTTCAGTGATGAAGACTCTTCGGAGCCCACTTCAATAGCAACGA
1 ACTTCATCTG------A-TGTGTTCAGCGATGAAGACTCTTCAGAACCCACTTCAA-AGCAA-G-
*
7588029 TTTCGTACGAT
56 CTTCGTACGAT
7588040 AATTATTTAA
Statistics
Matches: 757, Mismatches: 134, Indels: 62
0.79 0.14 0.07
Matches are distributed among these distances:
412 32 0.04
413 50 0.07
415 1 0.00
419 96 0.13
420 114 0.15
421 4 0.01
422 1 0.00
423 40 0.05
424 2 0.00
425 1 0.00
426 1 0.00
428 9 0.01
431 13 0.02
432 392 0.52
433 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (423 bp):
ACTTCATCTGATGTGTTCAGCGATGAAGACTCTTCAGAACCCACTTCAAAGCAAGCTTCGTACGA
TGGATGTGAACGTAAAGATTTCTGGGCTTCTAAACAATCCTGTTGGTAGTTGCTAATAGGTGTTG
TTTGGAAGCATGAGAATCTTTCTTTCACATCTCTAGGCACAAGACACCTCAAAACACAAAGACTG
ACGATTGCAAACAATGACTTCATCGGTGTGTTCAGCATGAAGACTCTTCAGAACCCACTTCAAAA
GCAATGACTTCGTACGATGGATGTGAACGTAAAGATTTTTAGGCTTTCAAACAAAGCCTGTTGGT
GGTTCTAATAGGATTGTTTGGAAGCATGAGAATCTTTACGTTCACATCTCTAGGCACAAGACACC
TTAGAACACAAAGACTGACGATTGCAAACAACG
Found at i:7588440 original size:19 final size:16
Alignment explanation
Indices: 7588406--7588436 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
7588396 GTTTATTATT
7588406 ATTATATTAATATTTA
1 ATTATATTAATATTTA
7588422 ATTATATTAATATTT
1 ATTATATTAATATTT
7588437 TTTATAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTATATTAATATTTA
Found at i:7597160 original size:21 final size:17
Alignment explanation
Indices: 7597113--7597153 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
7597103 ACATTGTCAT
7597113 GAAAGAAAAAGAAGGTA
1 GAAAGAAAAAGAAGGTA
7597130 GAAAGAAAAAGAAGGTA
1 GAAAGAAAAAGAAGGTA
7597147 GAAAGAA
1 GAAAGAA
7597154 TAGAAAATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.66, C:0.00, G:0.29, T:0.05
Consensus pattern (17 bp):
GAAAGAAAAAGAAGGTA
Found at i:7614720 original size:27 final size:28
Alignment explanation
Indices: 7614673--7614730 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
7614663 ATATTGAACT
* *
7614673 TTTTTTTATCTTTTCTCTTTAATTTTCA
1 TTTTTTTATCTTTTATATTTAATTTTCA
* *
7614701 TTTTTTTAT-TTTTATATTTATTTTTTA
1 TTTTTTTATCTTTTATATTTAATTTTCA
7614728 TTT
1 TTT
7614731 GAGGATAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 17 0.65
28 9 0.35
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.78
Consensus pattern (28 bp):
TTTTTTTATCTTTTATATTTAATTTTCA
Found at i:7618921 original size:101 final size:101
Alignment explanation
Indices: 7618746--7618948 Score: 334
Period size: 101 Copynumber: 2.0 Consensus size: 101
7618736 CTTCAACTCA
* * * *
7618746 TTTTTTAAGCATGCTTTAAGGGGAGTCAGCTCATCACACTACCATCTCACACTTTAAGTGAAATG
1 TTTTTTAAGCATACTTTAAGGGGAGTCAGCTCATCACACTACCATCCCACACTCTAAGTGAAAGG
* * *
7618811 GAGCATACCTTCGACCCCCGAGCTAGTCAAGTAGAG
66 GAACATACCTTCCACCCCCGAACTAGTCAAGTAGAG
7618847 TTTTTTAAGCATACTTTAAGGGGAGTCAGCTCATCACACTACCATCCCACACTCTAAGTGAAAGG
1 TTTTTTAAGCATACTTTAAGGGGAGTCAGCTCATCACACTACCATCCCACACTCTAAGTGAAAGG
*
7618912 GAACATACCTTCCACCCCCGAACTAGTCAGGTAGAG
66 GAACATACCTTCCACCCCCGAACTAGTCAAGTAGAG
7618948 T
1 T
7618949 CATCCCGTGA
Statistics
Matches: 94, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 94 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.26
Consensus pattern (101 bp):
TTTTTTAAGCATACTTTAAGGGGAGTCAGCTCATCACACTACCATCCCACACTCTAAGTGAAAGG
GAACATACCTTCCACCCCCGAACTAGTCAAGTAGAG
Found at i:7627470 original size:13 final size:13
Alignment explanation
Indices: 7627452--7627476 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7627442 TAATTTCCAA
7627452 GAAAGTTTACCAG
1 GAAAGTTTACCAG
7627465 GAAAGTTTACCA
1 GAAAGTTTACCA
7627477 TTAGATACCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (13 bp):
GAAAGTTTACCAG
Found at i:7630486 original size:2 final size:2
Alignment explanation
Indices: 7630479--7630531 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
7630469 TCAATCTACA
7630479 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7630521 AT AT AT AT AT A
1 AT AT AT AT AT A
7630532 AAATTTACAG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Done.