Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007999.1 Hibiscus syriacus cultivar Beakdansim tig00110450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11700749
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 32 of 50
Found at i:7864730 original size:27 final size:24
Alignment explanation
Indices: 7864680--7864737 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
7864670 TGAGCCTATG
*
7864680 GTATCGATATTATTATATAAAGTA
1 GTATCGATACTATTATATAAAGTA
7864704 GTATCGATACTATTATATAAAGTA
1 GTATCGATACTATTATATAAAGTA
7864728 GTATCGATAC
1 GTATCGATAC
7864738 CCCTTTGGGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.38
Consensus pattern (24 bp):
GTATCGATACTATTATATAAAGTA
Found at i:7872329 original size:23 final size:23
Alignment explanation
Indices: 7872255--7872329 Score: 68
Period size: 23 Copynumber: 3.3 Consensus size: 23
7872245 TGATGCCTAG
7872255 GTATCGATGCATTCCTTGAATGT
1 GTATCGATGCATTCCTTGAATGT
* * *
7872278 GCATCTATACA---CTATG-ATAGT
1 GTATCGATGCATTCCT-TGAAT-GT
*
7872299 GTACCGATGCATTCCTTGAATGT
1 GTATCGATGCATTCCTTGAATGT
7872322 GTATCGAT
1 GTATCGAT
7872330 ACACTCAGGA
Statistics
Matches: 38, Mismatches: 8, Indels: 12
0.66 0.14 0.21
Matches are distributed among these distances:
20 4 0.11
21 11 0.29
23 19 0.50
24 4 0.11
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (23 bp):
GTATCGATGCATTCCTTGAATGT
Found at i:7872854 original size:12 final size:13
Alignment explanation
Indices: 7872825--7872857 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
7872815 ATAATATGAT
*
7872825 TTTTCAAACATTG
1 TTTTCAAACATAG
7872838 TTTTCAAA-ATAG
1 TTTTCAAACATAG
7872850 TTTTCAAA
1 TTTTCAAA
7872858 TTTTTCCCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.36, C:0.12, G:0.06, T:0.45
Consensus pattern (13 bp):
TTTTCAAACATAG
Found at i:7874725 original size:13 final size:13
Alignment explanation
Indices: 7874695--7874728 Score: 61
Period size: 12 Copynumber: 2.7 Consensus size: 13
7874685 AGAGGGAGTA
7874695 ATTTTCAAAATTG
1 ATTTTCAAAATTG
7874708 A-TTTCAAAATTG
1 ATTTTCAAAATTG
7874720 ATTTTCAAA
1 ATTTTCAAA
7874729 GAAAATCTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (13 bp):
ATTTTCAAAATTG
Found at i:7883474 original size:140 final size:140
Alignment explanation
Indices: 7883302--7883623 Score: 450
Period size: 140 Copynumber: 2.3 Consensus size: 140
7883292 GGTTATCACA
* *
7883302 TTAATGTCCGAGGCTCCATTTCGATTATTCGATTCAATAATTGATTAAAATTC-ACTAGGATTAA
1 TTAATGCCCGAGGTTCCATTTCGATTATTCGATTCAATAATTGATTAAAA-TCAACTAGGATTAA
* * **
7883366 TAATTA-AAGCCTCCACTTTAGATAAATTTCACTTTTAGTCCTTTAATTTAGGTTAATATTCAAT
65 TAATTACAA-CCTCCACTTTAGATAAATTTCACTTTTACTCCTTCAATTTAGGGAAATATTCAAT
7883430 TTGGTCCTCGCC
129 TTGGTCCTCGCC
* * * *
7883442 TTGATGCCCGATGTTCCATTTCGATTATTCGATTTAATAATTGATTAAAATCAATTAGGATTAAT
1 TTAATGCCCGAGGTTCCATTTCGATTATTCGATTCAATAATTGATTAAAATCAACTAGGATTAAT
* * *
7883507 GATTACAACCTTCACTTTAGATTAATTTCACTTTTACTCCTTCAATTTAGGGAAATATTCAATTT
66 AATTACAACCTCCACTTTAGATAAATTTCACTTTTACTCCTTCAATTTAGGGAAATATTCAATTT
7883572 GGTCCTCGCC
131 GGTCCTCGCC
* * * * *
7883582 TTAATGCCTGAGGTACCATTTTGATTATTAGATTCCATAATT
1 TTAATGCCCGAGGTTCCATTTCGATTATTCGATTCAATAATT
7883624 TGCTAAAATA
Statistics
Matches: 159, Mismatches: 21, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
139 2 0.01
140 155 0.97
141 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (140 bp):
TTAATGCCCGAGGTTCCATTTCGATTATTCGATTCAATAATTGATTAAAATCAACTAGGATTAAT
AATTACAACCTCCACTTTAGATAAATTTCACTTTTACTCCTTCAATTTAGGGAAATATTCAATTT
GGTCCTCGCC
Found at i:7884437 original size:21 final size:21
Alignment explanation
Indices: 7884413--7884468 Score: 69
Period size: 23 Copynumber: 2.6 Consensus size: 21
7884403 TAGTAAAAAT
7884413 AAAA-ATATTTTATTACATCTA
1 AAAATATATTTTATTA-ATCTA
*
7884434 AAAATATATTTTTTATTAGTCTA
1 AAAATATA--TTTTATTAATCTA
7884457 AAAATATATTTT
1 AAAATATATTTT
7884469 TTATTAGACT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 8 0.26
22 3 0.10
23 12 0.39
24 8 0.26
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (21 bp):
AAAATATATTTTATTAATCTA
Found at i:7884456 original size:23 final size:23
Alignment explanation
Indices: 7884420--7884475 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
7884410 AATAAAAATA
*
7884420 TTTTATTACATCTAAAAATATATT
1 TTTTATTA-GTCTAAAAATATATT
7884444 TTTTATTAGTCTAAAAATATATT
1 TTTTATTAGTCTAAAAATATATT
7884467 TTTTATTAG
1 TTTTATTAG
7884476 ACTTAATATG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
23 23 0.74
24 8 0.26
ACGTcount: A:0.38, C:0.05, G:0.04, T:0.54
Consensus pattern (23 bp):
TTTTATTAGTCTAAAAATATATT
Found at i:7888130 original size:15 final size:14
Alignment explanation
Indices: 7888110--7888163 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 14
7888100 ATTTTTAAAT
7888110 ATTTTAAAAAATTA
1 ATTTTAAAAAATTA
*
7888124 CATTTTATAAAAAATA
1 -ATTTTA-AAAAATTA
7888140 TATTTTAAAAATACTTA
1 -ATTTTAAAAA-A-TTA
7888157 ATTTTAA
1 ATTTTAA
7888164 CTTTGTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
15 10 0.30
16 21 0.64
17 2 0.06
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (14 bp):
ATTTTAAAAAATTA
Found at i:7888144 original size:16 final size:15
Alignment explanation
Indices: 7888108--7888150 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
7888098 TTATTTTTAA
*
7888108 ATATTTTAAAAAATT
1 ATATTTTAAAAAAAT
*
7888123 ACATTTTATAAAAAAT
1 ATATTTTA-AAAAAAT
7888139 ATATTTTAAAAA
1 ATATTTTAAAAA
7888151 TACTTAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (15 bp):
ATATTTTAAAAAAAT
Found at i:7888384 original size:3 final size:3
Alignment explanation
Indices: 7888378--7888402 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7888368 AAAAACATAT
7888378 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
7888403 GTTCATGTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7892526 original size:21 final size:20
Alignment explanation
Indices: 7892481--7892937 Score: 204
Period size: 21 Copynumber: 21.9 Consensus size: 20
7892471 ACTTCGACTA
7892481 TCGCATTGCGATAGTCCAAGT
1 TCGC-TTGCGATAGTCCAAGT
*
7892502 TCGCATTGCGATAGTCGAAGT
1 TCGC-TTGCGATAGTCCAAGT
* * **
7892523 TCGCGTTGTGA-A-TCTGGAAAC
1 TCGC-TTGCGATAGTC--CAAGT
* *
7892544 T-GATTTGCGATAGTCGAAGT
1 TCG-CTTGCGATAGTCCAAGT
* * *
7892564 TCGCGTTGCGATTTATTACAAAT
1 TCGC-TTGCGA--TAGTCCAAGT
* *
7892587 TC-ATTGCGATAGTCTAAGT
1 TCGCTTGCGATAGTCCAAGT
* *
7892606 TTG-TTGCGATAGTCGAAGT
1 TCGCTTGCGATAGTCCAAGT
*
7892625 TCGCGTTGCGATTTATTCCAAGT
1 TCGC-TTGCGA--TAGTCCAAGT
* *
7892648 TCG-TTGCGATTTATTCCAAAT
1 TCGCTTGCGA--TAGTCCAAGT
*
7892669 TCG-TTGCGATAGTCGAAGT
1 TCGCTTGCGATAGTCCAAGT
* * *
7892688 TCGCGTTGCAATTTATTCCAAAT
1 TCGC-TTGCGA--TAGTCCAAGT
*
7892711 TCG-TTGCGATTTATTCCAAGT
1 TCGCTTGCGA--TAGTCCAAGT
*
7892732 TCG-TTGCGATAGTCGAAGT
1 TCGCTTGCGATAGTCCAAGT
* *
7892751 TCGCATTGCGATTTATTCCAAAT
1 TCGC-TTGCGA--TAGTCCAAGT
7892774 TCG-TTGCGATAGTCCAAGT
1 TCGCTTGCGATAGTCCAAGT
* *
7892793 TCGTGTTGCGATTTATTCCAAGT
1 TCG-CTTGCGA--TAGTCCAAGT
*
7892816 TCG-TTGCGATAGTCGAAGT
1 TCGCTTGCGATAGTCCAAGT
* * *
7892835 TCGCGTTGTGATTTATTCCAAAT
1 TCGC-TTGCGA--TAGTCCAAGT
*
7892858 TCG-TTGCGATTTATTCCAAGT
1 TCGCTTGCGA--TAGTCCAAGT
*
7892879 TCG-TTGCGATAGTCGAAGT
1 TCGCTTGCGATAGTCCAAGT
* *
7892898 TCGAGTTGCGATTTATTCCAAGT
1 TCG-CTTGCGA--TAGTCCAAGT
7892921 TCG-TTGCGATAGTCCAA
1 TCGCTTGCGATAGTCCAA
7892938 AATCGCAACG
Statistics
Matches: 347, Mismatches: 55, Indels: 70
0.74 0.12 0.15
Matches are distributed among these distances:
19 87 0.25
20 11 0.03
21 175 0.50
22 2 0.01
23 72 0.21
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.36
Consensus pattern (20 bp):
TCGCTTGCGATAGTCCAAGT
Found at i:7892655 original size:42 final size:42
Alignment explanation
Indices: 7892602--7892888 Score: 293
Period size: 42 Copynumber: 6.8 Consensus size: 42
7892592 GCGATAGTCT
* *
7892602 AAGTTTGTTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCC
1 AAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCC
* * * *
7892644 AAGTTCGTTGCGATTTATTCCAAATT--CGTTGCGA--TAGTCG
1 AAGTTCGTTGCGA--TAGTCCAAGTTCGCGTTGCGATTTATTCC
* * *
7892684 AAGTTCGCGTTGCAATTTATTCCAAATT--CGTTGCGATTTATTCC
1 AAGTT--CGTTGCGA--TAGTCCAAGTTCGCGTTGCGATTTATTCC
* *
7892728 AAGTTCGTTGCGATAGTCGAAGTTCGCATTGCGATTTATTCC
1 AAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCC
* *
7892770 AAATTCGTTGCGATAGTCCAAGTTCGTGTTGCGATTTATTCC
1 AAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCC
* *
7892812 AAGTTCGTTGCGATAGTCGAAGTTCGCGTTGTGATTTATTCC
1 AAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCC
* *
7892854 AAATTCGTTGCGATTTATTCCAAGTT--CGTTGCGAT
1 AAGTTCGTTGCGA--TAGTCCAAGTTCGCGTTGCGAT
7892889 AGTCGAAGTT
Statistics
Matches: 209, Mismatches: 26, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
40 17 0.08
42 166 0.79
44 26 0.12
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.38
Consensus pattern (42 bp):
AAGTTCGTTGCGATAGTCCAAGTTCGCGTTGCGATTTATTCC
Found at i:7892702 original size:63 final size:63
Alignment explanation
Indices: 7892548--7892934 Score: 402
Period size: 63 Copynumber: 6.2 Consensus size: 63
7892538 GGAAACTGAT
* * * * *
7892548 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTACAAATTCATTGCGA--TAGTCTAAGTTTG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAGTTCG
* *
7892609 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATTTATTCCAAATTCG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAGTTCG
*
7892672 TTGCGATAGTCGAAGTTCGCGTTGCAATTTATTCCAAATTCGTTGCGATTTATTCCAAGTTCG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAGTTCG
* *
7892735 TTGCGATAGTCGAAGTTCGCATTGCGATTTATTCCAAATTCGTTGCGA--TAGTCCAAGTTCGTG
1 TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAGTTC--G
* * * * * * *
7892798 TTGCGATTTATTCCAAGTT--CGTTGCGA--TAGTCGAAGTTCGCGTTGTGATTTATTCCAAATT
1 TTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCCAAATT--CGTTGCGATTTATTCCAAGTT
7892859 CG
62 CG
* * * * *
7892861 TTGCGATTTATTCCAAGTT--CGTTGCGA--TAGTCGAAGTTCGAGTTGCGATTTATTCCAAGTT
1 TTGCGA--TAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTC--GTTGCGATTTATTCCAAGTT
7892922 CG
62 CG
7892924 TTGCGATAGTC
1 TTGCGATAGTC
7892935 CAAAATCGCA
Statistics
Matches: 289, Mismatches: 25, Indels: 24
0.86 0.07 0.07
Matches are distributed among these distances:
61 69 0.24
63 201 0.70
65 19 0.07
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.38
Consensus pattern (63 bp):
TTGCGATAGTCGAAGTTCGCGTTGCGATTTATTCCAAATTCGTTGCGATTTATTCCAAGTTCG
Found at i:7892740 original size:105 final size:105
Alignment explanation
Indices: 7892602--7892937 Score: 459
Period size: 105 Copynumber: 3.2 Consensus size: 105
7892592 GCGATAGTCT
* *
7892602 AAGTTTGTTGCGA-TAGTCGAAGTTCGCGTTGCGATTTATTCCAAGTTCGTTGCGATTTATTCCA
1 AAGTTCGTTGCGATTAGTCCAAGTTC-CGTTGCGATTTATTCCAAGTTCGTTGCGATTTATTCCA
* *
7892666 AATTCGTTGCGATAGTCGAAGTTCGCGTTGCAATTTATTCC
65 AATTCGTTGCGATAGTCGAAGTTCGAGTTGCGATTTATTCC
* * * *
7892707 AAATTCGTTGCGATTTATTCCAAGTT-CGTTGCGA--TAGTCGAAGTTCGCATTGCGATTTATTC
1 AAGTTCGTTGCGA-TTAGTCCAAGTTCCGTTGCGATTTATTCCAAGTTCG--TTGCGATTTATTC
* *
7892769 CAAATTCGTTGCGATAGTCCAAGTTCGTGTTGCGATTTATTCC
63 CAAATTCGTTGCGATAGTCGAAGTTCGAGTTGCGATTTATTCC
* * *
7892812 AAGTTCGTTGCGA-TAGTCGAAGTTCGCGTTGTGATTTATTCCAAATTCGTTGCGATTTATTCCA
1 AAGTTCGTTGCGATTAGTCCAAGTTC-CGTTGCGATTTATTCCAAGTTCGTTGCGATTTATTCCA
*
7892876 AGTTCGTTGCGATAGTCGAAGTTCGAGTTGCGATTTATTCC
65 AATTCGTTGCGATAGTCGAAGTTCGAGTTGCGATTTATTCC
7892917 AAGTTCGTTGCGA-TAGTCCAA
1 AAGTTCGTTGCGATTAGTCCAA
7892938 AATCGCAACG
Statistics
Matches: 203, Mismatches: 20, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
103 20 0.10
105 164 0.81
107 19 0.09
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.38
Consensus pattern (105 bp):
AAGTTCGTTGCGATTAGTCCAAGTTCCGTTGCGATTTATTCCAAGTTCGTTGCGATTTATTCCAA
ATTCGTTGCGATAGTCGAAGTTCGAGTTGCGATTTATTCC
Found at i:7892906 original size:42 final size:41
Alignment explanation
Indices: 7892548--7892937 Score: 284
Period size: 42 Copynumber: 9.4 Consensus size: 41
7892538 GGAAACTGAT
* * * *
7892548 TTGCGA-TAGTCGAAGTTCGCGTTGCGATTTATTACAAATTCA
1 TTGCGATTAGTCCAAGTT--CGTTGCGATTTATTCCAAGTTCG
* * * *
7892590 TTGCGA-TAGTCTAAGTTTGTTGCGA--TAGTCGAAGTTCGCG
1 TTGCGATTAGTCCAAGTTCGTTGCGATTTATTCCAAGTT--CG
* *
7892630 TTGCGATTTATTCCAAGTTCGTTGCGATTTATTCCAAATTCG
1 TTGCGA-TTAGTCCAAGTTCGTTGCGATTTATTCCAAGTTCG
* * *
7892672 TTGCGA-TAGTCGAAGTTCGCGTTGCAATTTATTCCAAATTCG
1 TTGCGATTAGTCCAAGTT--CGTTGCGATTTATTCCAAGTTCG
* * *
7892714 TTGCGATTTATTCCAAGTTCGTTGCGA--TAGTCGAAGTTCG
1 TTGCGA-TTAGTCCAAGTTCGTTGCGATTTATTCCAAGTTCG
* * *
7892754 CATTGCGATTTATTCCAAATTCGTTGCGA--TAGTCCAAGTTCGTG
1 --TTGCGA-TTAGTCCAAGTTCGTTGCGATTTATTCCAAGTTC--G
* * *
7892798 TTGCGATTTATTCCAAGTTCGTTGCGA--TAGTCGAAGTTCGCG
1 TTGCGA-TTAGTCCAAGTTCGTTGCGATTTATTCCAAGTT--CG
* * *
7892840 TTGTGATTTATTCCAAATTCGTTGCGATTTATTCCAAGTTCG
1 TTGCGA-TTAGTCCAAGTTCGTTGCGATTTATTCCAAGTTCG
*
7892882 TTGCGA-TAGTCGAAGTTCGAGTTGCGATTTATTCCAAGTTCG
1 TTGCGATTAGTCCAAGTTC--GTTGCGATTTATTCCAAGTTCG
7892924 TTGCGA-TAGTCCAA
1 TTGCGATTAGTCCAA
7892938 AATCGCAACG
Statistics
Matches: 293, Mismatches: 35, Indels: 40
0.80 0.10 0.11
Matches are distributed among these distances:
38 7 0.02
40 42 0.14
42 216 0.74
44 28 0.10
ACGTcount: A:0.22, C:0.18, G:0.23, T:0.37
Consensus pattern (41 bp):
TTGCGATTAGTCCAAGTTCGTTGCGATTTATTCCAAGTTCG
Found at i:7893038 original size:6 final size:6
Alignment explanation
Indices: 7893027--7893059 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
7893017 GACACGTATT
7893027 ACCACG ACCACG ACCACG ACCACG ACCACG ACC
1 ACCACG ACCACG ACCACG ACCACG ACCACG ACC
7893060 CGAGACGGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.33, C:0.52, G:0.15, T:0.00
Consensus pattern (6 bp):
ACCACG
Found at i:7893860 original size:42 final size:44
Alignment explanation
Indices: 7893801--7894089 Score: 182
Period size: 42 Copynumber: 6.8 Consensus size: 44
7893791 CGTTGCGATA
*
7893801 TTGGAATTAATCGCAACGCGAACTTCGACTATCGC-AA-CGAAC
1 TTGGAATAAATCGCAACGCGAACTTCGACTATCGCAAAGCGAAC
7893843 TTGGAATAAATCGCAACGCGAACTTCGACTATCGCAAAGCGAAC
1 TTGGAATAAATCGCAACGCGAACTTCGACTATCGCAAAGCGAAC
* * * * * *
7893887 TTCGACT--ATCGCAA--CGAATTTGGAATAAATCGCAACGCGAAC
1 TTGGAATAAATCGCAACGCGAACTTCGACT--ATCGCAAAGCGAAC
* * * * * *
7893929 TTCGACT--ATCGCAA--CGAACTTGGAATAAATTGCAACGCGAAC
1 TTGGAATAAATCGCAACGCGAACTTCGACT--ATCGCAAAGCGAAC
* * * * *
7893971 TTCGACT--ATCGCAA--CGAACTTGGAATAAATCGCAACGCGAAC
1 TTGGAATAAATCGCAACGCGAACTTCGACT--ATCGCAAAGCGAAC
* * * * *
7894013 TTCGACT--ATCGCAA--CGAACTTGGACTATCGCAACGCGAAT
1 TTGGAATAAATCGCAACGCGAACTTCGACTATCGCAAAGCGAAC
*
7894053 TTGGAATAAATCGCAACGCGAACTTGGACTATCGCAA
1 TTGGAATAAATCGCAACGCGAACTTCGACTATCGCAA
7894090 CAAATTTGGA
Statistics
Matches: 225, Mismatches: 14, Indels: 14
0.89 0.06 0.06
Matches are distributed among these distances:
40 27 0.12
42 167 0.74
43 2 0.01
44 29 0.13
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.21
Consensus pattern (44 bp):
TTGGAATAAATCGCAACGCGAACTTCGACTATCGCAAAGCGAAC
Found at i:7893910 original size:63 final size:64
Alignment explanation
Indices: 7893808--7894107 Score: 318
Period size: 63 Copynumber: 4.8 Consensus size: 64
7893798 ATATTGGAAT
*
7893808 TAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGAC
1 TAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGAA
* * *
7893872 T-ATCGCAAAGCGAACTTCGACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTCGAC
1 TAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGAA
* * * * * *
7893935 T-ATCGCAA--CGAACTTGGAATAAATTGCAACGCGAACTTCGACT--ATCGCAA--CGAACTTG
1 TAATCGCAACGCGAACTTCGACT--ATCGCAA--CGAACTTGGAATAAATCGCAACGCGAACTTC
7893993 GAA
62 GAA
* * *
7893996 TAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGACT--ATCGCAACGCGAATTTGGAA
1 T-AATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGAA
* * *
7894059 TAAATCGCAACGCGAACTTGGACTATCGCAACAAATTTGG-A-AAATCGCA
1 T-AATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCA
7894108 TTGCGATAGT
Statistics
Matches: 205, Mismatches: 19, Indels: 25
0.82 0.08 0.10
Matches are distributed among these distances:
61 38 0.19
63 147 0.72
64 1 0.00
65 19 0.09
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.20
Consensus pattern (64 bp):
TAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACTTCGAA
Found at i:7893983 original size:105 final size:105
Alignment explanation
Indices: 7893801--7894089 Score: 392
Period size: 105 Copynumber: 2.7 Consensus size: 105
7893791 CGTTGCGATA
7893801 TTGGAATTAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAAC
1 TTGGAA-TAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAAC
* *
7893866 TTCGACTATCGCAAAGCGAACTTCGACT-ATCGCAA-CGAAT
65 TTCGACTATCGCAAA-CGAACTTCGAATAATCGCAACCGAAC
*
7893906 TTGGAATAAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATTGCAACGCGAAC
1 TTGGAAT-AATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAAC
*
7893971 TTCGACTATCGC-AACGAACTTGGAATAAATCGCAACGCGAAC
65 TTCGACTATCGCAAACGAACTTCGAAT-AATCGCAAC-CGAAC
* * * *
7894013 TTCGACT-ATCGCAA--CGAACTTGGACTATCGCAACGCGAATTTGGAATAAATCGCAACGCGAA
1 TTGGAATAATCGCAACGCGAACTTCGACTATCGCAA--CGAACTTGGAATAAATCGCAACGCGAA
*
7894075 CTTGGACTATCGCAA
64 CTTCGACTATCGCAA
7894090 CAAATTTGGA
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
103 28 0.17
104 3 0.02
105 125 0.75
106 1 0.01
107 9 0.05
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.21
Consensus pattern (105 bp):
TTGGAATAATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCGCAACGCGAACT
TCGACTATCGCAAACGAACTTCGAATAATCGCAACCGAAC
Found at i:7894070 original size:84 final size:82
Alignment explanation
Indices: 7893852--7894051 Score: 319
Period size: 84 Copynumber: 2.4 Consensus size: 82
7893842 CTTGGAATAA
* * *
7893852 ATCGCAACGCGAACTTCGACTATCGCAAAGCGAACTTCGACTATCGCAACGAATTTGGAATAAAT
1 ATCGCAA--CGAACTTGGACTATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAAT
7893917 CGCAACGCGAACTTCGACT
64 CGCAACGCGAACTTCGACT
* *
7893936 ATCGCAACGAACTTGGAATAAATTGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAAT
1 ATCGCAACGAACTTGGACT--ATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAAT
7894001 CGCAACGCGAACTTCGACT
64 CGCAACGCGAACTTCGACT
7894020 ATCGCAACGAACTTGGACTATCGCAACGCGAA
1 ATCGCAACGAACTTGGACTATCGCAACGCGAA
7894052 TTTGGAATAA
Statistics
Matches: 107, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
82 22 0.21
84 85 0.79
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.20
Consensus pattern (82 bp):
ATCGCAACGAACTTGGACTATCGCAACGCGAACTTCGACTATCGCAACGAACTTGGAATAAATCG
CAACGCGAACTTCGACT
Found at i:7894132 original size:21 final size:21
Alignment explanation
Indices: 7894103--7894155 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
7894093 ATTTGGAAAA
*
7894103 TCGCATTGCGATAGTCGAAGT
1 TCGCGTTGCGATAGTCGAAGT
*
7894124 TCGCGTTGCGATAGTCGATGT
1 TCGCGTTGCGATAGTCGAAGT
7894145 TCGCGTTGCGA
1 TCGCGTTGCGA
7894156 ATTATCGATC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.17, C:0.21, G:0.32, T:0.30
Consensus pattern (21 bp):
TCGCGTTGCGATAGTCGAAGT
Found at i:7897225 original size:3 final size:3
Alignment explanation
Indices: 7897217--7897267 Score: 84
Period size: 3 Copynumber: 16.3 Consensus size: 3
7897207 TCGTCCGGGT
7897217 TTA TTA TTA TTA TTA TTA TTA TTTA TTAA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TT-A TTA TTA TTA TTA TTA TTA
7897264 TTA T
1 TTA T
7897268 ATTTCATGTT
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
3 40 0.87
4 6 0.13
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7897255 original size:26 final size:27
Alignment explanation
Indices: 7897219--7897270 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 27
7897209 GTCCGGGTTT
7897219 ATTATTATTATTATTATTATT-TATTA
1 ATTATTATTATTATTATTATTATATTA
7897245 ATTATTATTATTATTATTATTATATT
1 ATTATTATTATTATTATTATTATATT
7897271 TCATGTTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (27 bp):
ATTATTATTATTATTATTATTATATTA
Found at i:7898678 original size:20 final size:20
Alignment explanation
Indices: 7898649--7898686 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7898639 TTTCAAATGA
7898649 ATGCACCGATACACCAATCC
1 ATGCACCGATACACCAATCC
* *
7898669 ATGCATCGATGCACCAAT
1 ATGCACCGATACACCAAT
7898687 GAATAAATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.34, G:0.13, T:0.18
Consensus pattern (20 bp):
ATGCACCGATACACCAATCC
Found at i:7898740 original size:64 final size:63
Alignment explanation
Indices: 7898666--7898876 Score: 176
Period size: 64 Copynumber: 3.3 Consensus size: 63
7898656 GATACACCAA
*
7898666 TCCATGCATCGATGCAC-CA-ATGAATAAATTGAACATCGAATGCAGTTTATGCATCGATGCACT
1 TCCATGCATCGATGCACTCAGATGAATAAA---AACATCGAATGCAGTTTATGCATCGATGCACA
7898729 C
63 C
* * * * *
7898730 TCCATGCATCGATGCACTCAGGTTTGAATGAAAACATCGATTGCATTTTATGCATCGATGTACAC
1 TCCATGCATCGATGCACTCA-G-ATGAATAAAAACATCGAATGCAGTTTATGCATCGATGCACAC
* * * * * * * * * *
7898795 ACCATGCATCAATGCACTTAGGTTTATTCAAAACATCAAATGCATTTTATGCATTGATGCACAC
1 TCCATGCATCGATGCACTCA-GATGAATAAAAACATCGAATGCAGTTTATGCATCGATGCACAC
* *
7898859 T-TAGTGCACCGATGCACT
1 TCCA-TGCATCGATGCACT
7898877 AAGTGTTCCA
Statistics
Matches: 122, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
63 1 0.01
64 64 0.52
65 50 0.41
68 7 0.06
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (63 bp):
TCCATGCATCGATGCACTCAGATGAATAAAAACATCGAATGCAGTTTATGCATCGATGCACAC
Found at i:7898780 original size:65 final size:64
Alignment explanation
Indices: 7898697--7898858 Score: 216
Period size: 65 Copynumber: 2.5 Consensus size: 64
7898687 GAATAAATTG
* * * * *
7898697 AACATCGAATGCAGTTTATGCATCGATGCACTCTCCATGCATCGATGCACTCAGGTTTGAATGAA
1 AACATCGAATGCATTTTATGCATCGATGCACACACCATGCATCAATGCACTCAGGTTT-AATCAA
* * * *
7898762 AACATCGATTGCATTTTATGCATCGATGTACACACCATGCATCAATGCACTTAGGTTTATTCAA
1 AACATCGAATGCATTTTATGCATCGATGCACACACCATGCATCAATGCACTCAGGTTTAATCAA
* *
7898826 AACATCAAATGCATTTTATGCATTGATGCACAC
1 AACATCGAATGCATTTTATGCATCGATGCACAC
7898859 TTAGTGCACC
Statistics
Matches: 84, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
64 33 0.39
65 51 0.61
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.30
Consensus pattern (64 bp):
AACATCGAATGCATTTTATGCATCGATGCACACACCATGCATCAATGCACTCAGGTTTAATCAA
Found at i:7907336 original size:20 final size:20
Alignment explanation
Indices: 7907307--7907344 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7907297 TTTCAAAGGA
*
7907307 ATGCACCGATTCACCAATAC
1 ATGCACCGATGCACCAATAC
*
7907327 ATGCATCGATGCACCAAT
1 ATGCACCGATGCACCAAT
7907345 GAATAAATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.32, G:0.13, T:0.21
Consensus pattern (20 bp):
ATGCACCGATGCACCAATAC
Found at i:7907396 original size:19 final size:19
Alignment explanation
Indices: 7907372--7907482 Score: 222
Period size: 19 Copynumber: 5.8 Consensus size: 19
7907362 AATGCAGTTT
7907372 ATGCATCGATGCACTCTCC
1 ATGCATCGATGCACTCTCC
7907391 ATGCATCGATGCACTCTCC
1 ATGCATCGATGCACTCTCC
7907410 ATGCATCGATGCACTCTCC
1 ATGCATCGATGCACTCTCC
7907429 ATGCATCGATGCACTCTCC
1 ATGCATCGATGCACTCTCC
7907448 ATGCATCGATGCACTCTCC
1 ATGCATCGATGCACTCTCC
7907467 ATGCATCGATGCACTC
1 ATGCATCGATGCACTC
7907483 AGGTTTTAAT
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 92 1.00
ACGTcount: A:0.22, C:0.36, G:0.16, T:0.26
Consensus pattern (19 bp):
ATGCATCGATGCACTCTCC
Found at i:7907517 original size:65 final size:64
Alignment explanation
Indices: 7907448--7907592 Score: 182
Period size: 64 Copynumber: 2.2 Consensus size: 64
7907438 TGCACTCTCC
* * ** * *
7907448 ATGCATCGATGCACTCTCCATGCATCGATGCACTCAGGTTTTAATGAAAACATCGATTGCATTTT
1 ATGCATCGATGCACACACCATGCATCGATGCACTCA-GACTTAATCAAAACATCGAATGCATTTT
* * * * *
7907513 ATGCATTGATGTACACACCATGCATTGATGCACTTAGACTTATTCAAAACATCGAATGCATTTT
1 ATGCATCGATGCACACACCATGCATCGATGCACTCAGACTTAATCAAAACATCGAATGCATTTT
7907577 ATGCATCGATGCACAC
1 ATGCATCGATGCACAC
7907593 TTAGTGCACC
Statistics
Matches: 67, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
64 37 0.55
65 30 0.45
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (64 bp):
ATGCATCGATGCACACACCATGCATCGATGCACTCAGACTTAATCAAAACATCGAATGCATTTT
Found at i:7921206 original size:40 final size:40
Alignment explanation
Indices: 7921162--7921312 Score: 248
Period size: 40 Copynumber: 3.8 Consensus size: 40
7921152 AAGGACACTA
7921162 GGTGTATATGGTGAGCACGACCTTATGTGTAATACACTTC
1 GGTGTATATGGTGAGCACGACCTTATGTGTAATACACTTC
*
7921202 GGTGTATATGGTGGGCACGACCTTATGTGTAATACACTTC
1 GGTGTATATGGTGAGCACGACCTTATGTGTAATACACTTC
* * * *
7921242 GGTGTATATGGTGGGAACGACCTTATATATAATACACTTC
1 GGTGTATATGGTGAGCACGACCTTATGTGTAATACACTTC
*
7921282 GGTGTATATGGTGAGCACAACCTTATGTGTA
1 GGTGTATATGGTGAGCACGACCTTATGTGTA
7921313 GCACTACGGT
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (40 bp):
GGTGTATATGGTGAGCACGACCTTATGTGTAATACACTTC
Found at i:7922035 original size:22 final size:22
Alignment explanation
Indices: 7921994--7922036 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7921984 GCATCGGTAC
* * *
7921994 ACTGTTCACAGTATTGTTCATT
1 ACTGTTCACAATACTATTCATT
7922016 ACTGTTCACAATACTATTCAT
1 ACTGTTCACAATACTATTCAT
7922037 AAAAACATCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (22 bp):
ACTGTTCACAATACTATTCATT
Found at i:7929722 original size:22 final size:23
Alignment explanation
Indices: 7929668--7929724 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
7929658 TTGTGACATG
*
7929668 TTCTCTGCCTTTATGGTACGTTT
1 TTCTCTGCCTTTATGGCACGTTT
* *
7929691 TTCTTTGCCTTTGTGGCACG-TT
1 TTCTCTGCCTTTATGGCACGTTT
*
7929713 TTCTCAGCCTTT
1 TTCTCTGCCTTT
7929725 TGGTAGCTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 12 0.41
23 17 0.59
ACGTcount: A:0.07, C:0.25, G:0.18, T:0.51
Consensus pattern (23 bp):
TTCTCTGCCTTTATGGCACGTTT
Found at i:7935459 original size:64 final size:65
Alignment explanation
Indices: 7935347--7935503 Score: 160
Period size: 64 Copynumber: 2.4 Consensus size: 65
7935337 AGTGTGTATT
* * ** *
7935347 GATGCACAGGGAGTGCATCGATGCACCC-ATTAAAAATGGAAACATCGAATACCA-TTAGTGCAT
1 GATGCATAAGGAGTGCATCGATGCACCCGATTAAAAATACAAACATCGAATACCATTTA-TGCAC
7935410 C
65 C
* * ***
7935411 GATGCATAAGGAGTGCATCGATGCACCCGCTT-AAAATACAAACTTCGAATGGGATTTATGCACC
1 GATGCATAAGGAGTGCATCGATGCACCCGATTAAAAATACAAACATCGAATACCATTTATGCACC
* *
7935475 GATGCAT-AGACAGTACATCGATGCACCCG
1 GATGCATAAG-GAGTGCATCGATGCACCCG
7935504 TCAAGGGATG
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
63 2 0.03
64 71 0.91
65 5 0.06
ACGTcount: A:0.34, C:0.23, G:0.22, T:0.21
Consensus pattern (65 bp):
GATGCATAAGGAGTGCATCGATGCACCCGATTAAAAATACAAACATCGAATACCATTTATGCACC
Found at i:7943850 original size:64 final size:65
Alignment explanation
Indices: 7943747--7943906 Score: 168
Period size: 64 Copynumber: 2.5 Consensus size: 65
7943737 TTCAGTGTGT
* * **
7943747 ATCGATGCACAGGGAGTGCATCGATGCACCC-ATTAAAAATGGAAACATCAAATGCCA-TTAGTG
1 ATCGATGCATAAGGAGTGCATCGATGCACCCGATTAAAAATACAAACATCAAATGCCATTTA-TG
7943810 C
65 C
* * **
7943811 ATCGATGCATAAGGAGTGCATCGATGCACCCGCTT-AAAATACAAACATCGAATGGGATTTATGC
1 ATCGATGCATAAGGAGTGCATCGATGCACCCGATTAAAAATACAAACATCAAATGCCATTTATGC
* *
7943875 A-CTGATGCAT-AGACAGTGCATCGGTGCACCCG
1 ATC-GATGCATAAG-GAGTGCATCGATGCACCCG
7943907 TCAAGGGATG
Statistics
Matches: 82, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
63 3 0.04
64 74 0.90
65 5 0.06
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (65 bp):
ATCGATGCATAAGGAGTGCATCGATGCACCCGATTAAAAATACAAACATCAAATGCCATTTATGC
Found at i:7955301 original size:19 final size:19
Alignment explanation
Indices: 7955278--7955333 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 19
7955268 TTATCCCCTA
7955278 TTTTTTCTTTTTTTC-TTC
1 TTTTTTCTTTTTTTCTTTC
** *
7955296 TCTTTTTCCATTTTCCTTTC
1 T-TTTTTCTTTTTTTCTTTC
7955316 TTTTTTCTTTTTTT-TTTC
1 TTTTTTCTTTTTTTCTTTC
7955334 AAGCAAATAC
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
18 5 0.17
19 21 0.70
20 4 0.13
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.79
Consensus pattern (19 bp):
TTTTTTCTTTTTTTCTTTC
Found at i:7962412 original size:17 final size:17
Alignment explanation
Indices: 7962386--7962418 Score: 50
Period size: 16 Copynumber: 1.9 Consensus size: 17
7962376 TAAAACAATA
7962386 CAAAATATAAAGAAAGCT
1 CAAAATATAAA-AAAGCT
7962404 CAAAA-ATAAAAAAGC
1 CAAAATATAAAAAAGC
7962419 AAAATGTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 5 0.33
18 5 0.33
ACGTcount: A:0.67, C:0.12, G:0.09, T:0.12
Consensus pattern (17 bp):
CAAAATATAAAAAAGCT
Found at i:7969684 original size:19 final size:18
Alignment explanation
Indices: 7969662--7969710 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
7969652 AAATAAGTAA
7969662 AAAAATTAAAAATAAAAGG
1 AAAAATTAAAAAT-AAAGG
* *
7969681 AAAAATAAATAAATAAATG
1 AAAAATTAA-AAATAAAGG
*
7969700 AAATATTAAAA
1 AAAAATTAAAA
7969711 TATATATATA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 2 0.08
19 19 0.76
20 4 0.16
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.20
Consensus pattern (18 bp):
AAAAATTAAAAATAAAGG
Found at i:7969717 original size:2 final size:2
Alignment explanation
Indices: 7969710--7969744 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7969700 AAATATTAAA
7969710 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7969745 AATGAGTGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7970627 original size:37 final size:37
Alignment explanation
Indices: 7970586--7970678 Score: 141
Period size: 37 Copynumber: 2.5 Consensus size: 37
7970576 GTGCTTGTGG
* * *
7970586 ATCCTATCTTTAGGAGTTTAAATAATAGTAGAACTCT
1 ATCCTATTTTTAGGAGTTTAAATAATAGCAAAACTCT
* *
7970623 ATCCTATTTTTAGGAGTTTAAATCATAGCAAAATTCT
1 ATCCTATTTTTAGGAGTTTAAATAATAGCAAAACTCT
7970660 ATCCTATTTTTAGGAGTTT
1 ATCCTATTTTTAGGAGTTT
7970679 GAATCCTAGT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (37 bp):
ATCCTATTTTTAGGAGTTTAAATAATAGCAAAACTCT
Found at i:7971597 original size:106 final size:106
Alignment explanation
Indices: 7971412--7972398 Score: 1404
Period size: 106 Copynumber: 9.3 Consensus size: 106
7971402 GCATTGTTCT
* * *
7971412 GAGTCCAATATCCTCCG-TCGTGAAGTTGAAATTGGCTCT-AGAACTGGGAAATTGTTTGTTGAC
1 GAGTCCAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGA-AATTGGGAAATTGTTTATTGAC
* * * *
7971475 AACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTC
64 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
7971518 GAGTCCAATATCCTTTGTTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* *
7971583 CCAGCGGTCCCTTCGTCGTGAAGTTGAGCTTGTGTTGTCTTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTC-TG
* * *
7971625 G-GTCCAAGATCCTTCGCTGAGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* *
7971689 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGATGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * *
7971730 AAGTCCAATATCCTACGCTGTGAAGTTGAAATTGACTCTGAAATTGGAAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* *
7971795 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGTGTTCTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
** * * * *
7971836 GAGTCCAATATCCTTCATTGTAAAGTTGAAATTGGCTCTGAAATTGAGAAGTTGTTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* *
7971901 CCAGCAGTCCTTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
7971942 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAGTTGATTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* *
7972007 CCAGCAGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* *
7972048 GAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGAAATTGGAAAATTGTTTATTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* * * *
7972113 CCAGCCGTCCCTTCGTCCTGAAGTTGAATTTGCATTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * ** *
7972154 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCTGAAATTGAGAAGTCATTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
*
7972219 CCAGCGGTCCCTTCGTTGTGAAGTTGAACTTGCGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
* * * * *
7972260 GAGTCCAATATTCTTCGCTCTGAAGTTGAAATTGGCTCTAAAATTGAGAAATTGTTTATTGAAAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
* *
7972325 CCAGCGGTTCCTTCGTCGTGAAGTTGAACTTGCATTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
**
7972366 GAGTCCAATATCCTTCATTGTGAAGTTGAAATT
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATT
7972399 TGACTCTAAA
Statistics
Matches: 787, Mismatches: 90, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
105 1 0.00
106 782 0.99
107 4 0.01
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (106 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTATTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCTG
Found at i:7973023 original size:22 final size:22
Alignment explanation
Indices: 7972997--7973051 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
7972987 TTGTGTTTGG
7972997 TCAAAGGTTTGGCATTTGATGC
1 TCAAAGGTTTGGCATTTGATGC
*
7973019 TCAAAGGTTTGGCATTTTATGC
1 TCAAAGGTTTGGCATTTGATGC
7973041 TCAAAGGTTTG
1 TCAAAGGTTTG
7973052 ATGGGGTAGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.38
Consensus pattern (22 bp):
TCAAAGGTTTGGCATTTGATGC
Found at i:7973685 original size:20 final size:20
Alignment explanation
Indices: 7973656--7973706 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
7973646 TTTTTGTCCA
*
7973656 TTTTTCTTTTTGATTT-TTGT
1 TTTTTGTTTTT-ATTTGTTGT
* *
7973676 TTTTTGTTTTTTTTTGTTTT
1 TTTTTGTTTTTATTTGTTGT
7973696 TTTTTGTTTTT
1 TTTTTGTTTTT
7973707 TCCCTTTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 3 0.11
20 24 0.89
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.86
Consensus pattern (20 bp):
TTTTTGTTTTTATTTGTTGT
Found at i:7973690 original size:10 final size:10
Alignment explanation
Indices: 7973675--7973707 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
7973665 TTGATTTTTG
7973675 TTTTTTGTTT
1 TTTTTTGTTT
7973685 TTTTTTGTTT
1 TTTTTTGTTT
7973695 TTTTTTGTTT
1 TTTTTTGTTT
7973705 TTT
1 TTT
7973708 CCCTTTTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:7973707 original size:7 final size:7
Alignment explanation
Indices: 7973662--7973707 Score: 60
Period size: 7 Copynumber: 6.7 Consensus size: 7
7973652 TCCATTTTTC
*
7973662 TTTTTGA
1 TTTTTGT
7973669 TTTTTGT
1 TTTTTGT
7973676 TTTTTGT
1 TTTTTGT
7973683 TTTTT-T
1 TTTTTGT
7973689 TTGTTT-T
1 TT-TTTGT
7973696 TTTTTGT
1 TTTTTGT
7973703 TTTTT
1 TTTTT
7973708 CCCTTTTTGT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
6 6 0.17
7 30 0.83
ACGTcount: A:0.02, C:0.00, G:0.11, T:0.87
Consensus pattern (7 bp):
TTTTTGT
Found at i:7977047 original size:19 final size:19
Alignment explanation
Indices: 7977014--7977050 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
7977004 TGCATATGAT
7977014 GGAAATAAAATAAAAGAGA
1 GGAAATAAAATAAAAGAGA
7977033 GGAAA-AAAATGAAAAGAG
1 GGAAATAAAAT-AAAAGAG
7977051 TTAGTAAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (19 bp):
GGAAATAAAATAAAAGAGA
Found at i:7978152 original size:17 final size:18
Alignment explanation
Indices: 7978116--7978197 Score: 53
Period size: 18 Copynumber: 4.6 Consensus size: 18
7978106 TGTTAGAGGG
*
7978116 AAAAAATGAATAAATGAA
1 AAAAAATGAATAAATAAA
*
7978134 AAAAAATGAA-GAATAAA
1 AAAAAATGAATAAATAAA
* ** *
7978151 AATAGGT-AAAAAATATAA
1 AAAAAATGAATAAATA-AA
*
7978169 AAAAAAGGAA-AAATAAA
1 AAAAAATGAATAAATAAA
7978186 TAAATAAATGAA
1 -AAA-AAATGAA
7978198 ATATTAATAT
Statistics
Matches: 48, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
16 2 0.04
17 15 0.31
18 23 0.48
19 8 0.17
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (18 bp):
AAAAAATGAATAAATAAA
Found at i:7978211 original size:2 final size:2
Alignment explanation
Indices: 7978204--7978244 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7978194 TGAAATATTA
7978204 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7978245 AATGAGTGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7978472 original size:2 final size:2
Alignment explanation
Indices: 7978461--7978490 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7978451 TAAAGATAAT
7978461 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7978491 GGTAATAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7981536 original size:17 final size:16
Alignment explanation
Indices: 7981509--7981542 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
7981499 TGGGGAAAAG
*
7981509 ATTTTTTTTTTCTTTT
1 ATTTTTTTTTTATTTT
7981525 ATTTTATTTTTTATTTT
1 ATTTT-TTTTTTATTTT
7981542 A
1 A
7981543 ACTTTTCTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (16 bp):
ATTTTTTTTTTATTTT
Found at i:7981716 original size:26 final size:27
Alignment explanation
Indices: 7981661--7981727 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
7981651 CTACCATCCA
*
7981661 TTTCTCACTCATTTTTAACTTTTCCTT
1 TTTCTCTCTCATTTTTAACTTTTCCTT
* *
7981688 TTTTTCTCTCATTTTTAACTTTTTC-T
1 TTTCTCTCTCATTTTTAACTTTTCCTT
7981714 TTTCTCTCTCATTT
1 TTTCTCTCTCATTT
7981728 CTTCATCTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
26 14 0.39
27 22 0.61
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (27 bp):
TTTCTCTCTCATTTTTAACTTTTCCTT
Found at i:7988247 original size:15 final size:15
Alignment explanation
Indices: 7988223--7988265 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
7988213 ATATTTAGCT
* *
7988223 AGGCGAGCGGATGTG
1 AGGCGGGCGGATGCG
7988238 AGGCGGGCGGATGCG
1 AGGCGGGCGGATGCG
* *
7988253 GGGCGGGCAGATG
1 AGGCGGGCGGATG
7988266 AGGGGCGGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.16, C:0.16, G:0.58, T:0.09
Consensus pattern (15 bp):
AGGCGGGCGGATGCG
Found at i:7988270 original size:15 final size:15
Alignment explanation
Indices: 7988239--7988274 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
7988229 GCGGATGTGA
* *
7988239 GGCGGGCGGATGCGG
1 GGCGGGCAGATGAGG
7988254 GGCGGGCAGATGAGG
1 GGCGGGCAGATGAGG
7988269 GGCGGG
1 GGCGGG
7988275 TAATGTCTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.11, C:0.17, G:0.67, T:0.06
Consensus pattern (15 bp):
GGCGGGCAGATGAGG
Found at i:7988661 original size:12 final size:12
Alignment explanation
Indices: 7988628--7988653 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7988618 ACAACTTTCT
7988628 ACAAACCTTTAA
1 ACAAACCTTTAA
7988640 ACAAACCTTTAA
1 ACAAACCTTTAA
7988652 AC
1 AC
7988654 GACCCTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (12 bp):
ACAAACCTTTAA
Found at i:7989795 original size:19 final size:20
Alignment explanation
Indices: 7989761--7989810 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
7989751 TTTTTTATTA
*
7989761 AAAATTTATTTTTATTCTC-T
1 AAAATTT-TATTTATTCTCTT
7989781 AAAATTTTATTTATTCTCTT
1 AAAATTTTATTTATTCTCTT
7989801 AAAATTTTAT
1 AAAATTTTAT
7989811 AAGATTAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (20 bp):
AAAATTTTATTTATTCTCTT
Found at i:7990387 original size:20 final size:20
Alignment explanation
Indices: 7990364--7990452 Score: 126
Period size: 20 Copynumber: 4.4 Consensus size: 20
7990354 GAATATGTAA
7990364 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
**
7990384 ATCGCAACGCGATAAT-ACAT
1 ATCGCAACGCGATTCTGAC-T
*
7990404 AATCGCAACTCGATTCTGACT
1 -ATCGCAACGCGATTCTGACT
7990425 ATCGCAACGCGATTCTGACT
1 ATCGCAACGCGATTCTGACT
7990445 ATCGCAAC
1 ATCGCAAC
7990453 ACTGAATTTC
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
19 2 0.03
20 42 0.70
21 14 0.23
22 2 0.03
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (20 bp):
ATCGCAACGCGATTCTGACT
Found at i:7991350 original size:24 final size:24
Alignment explanation
Indices: 7991273--7991338 Score: 132
Period size: 24 Copynumber: 2.8 Consensus size: 24
7991263 GTATTCAAAA
7991273 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
7991297 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
7991321 TTTGATCTTGGTCAATAC
1 TTTGATCTTGGTCAATAC
7991339 TTGGATTTTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:7991558 original size:12 final size:13
Alignment explanation
Indices: 7991543--7991575 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
7991533 AAAAAAAGAA
7991543 GAAGAAA-TCCCC
1 GAAGAAACTCCCC
7991555 GAAGAAACGTCCCC
1 GAAGAAAC-TCCCC
7991569 GAAGAAA
1 GAAGAAA
7991576 ATGCCACGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
14 12 0.63
ACGTcount: A:0.45, C:0.27, G:0.21, T:0.06
Consensus pattern (13 bp):
GAAGAAACTCCCC
Found at i:7993635 original size:18 final size:18
Alignment explanation
Indices: 7993612--7993646 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
7993602 AGCAAAAGGC
*
7993612 AATCAAAATCGCAATCAA
1 AATCAAAATCCCAATCAA
7993630 AATCAAAATCCCAATCA
1 AATCAAAATCCCAATCA
7993647 CAACCGGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.17
Consensus pattern (18 bp):
AATCAAAATCCCAATCAA
Found at i:7993872 original size:34 final size:34
Alignment explanation
Indices: 7993825--7993922 Score: 151
Period size: 34 Copynumber: 2.9 Consensus size: 34
7993815 TCATTTGAAT
* * *
7993825 ATCGCAACGCGAATTTGACTATCTCAATGCAAAA
1 ATCGCAATGCGAATTTGACTATCACAACGCAAAA
*
7993859 ATCGCAATACGAATTTGACTATCACAACGCAAAA
1 ATCGCAATGCGAATTTGACTATCACAACGCAAAA
*
7993893 ATCGCAATGCGAATTTGACTATCGCAACGC
1 ATCGCAATGCGAATTTGACTATCACAACGC
7993923 GAATTTGACT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 58 1.00
ACGTcount: A:0.38, C:0.24, G:0.15, T:0.22
Consensus pattern (34 bp):
ATCGCAATGCGAATTTGACTATCACAACGCAAAA
Found at i:7993918 original size:20 final size:20
Alignment explanation
Indices: 7993893--7994110 Score: 252
Period size: 20 Copynumber: 11.2 Consensus size: 20
7993883 CAACGCAAAA
*
7993893 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAATTTGACT
7993913 ATCGCAACGCGAATTTGACT
1 ATCGCAACGCGAATTTGACT
* *
7993933 ATCGCAACGCGGATATGACT
1 ATCGCAACGCGAATTTGACT
* *
7993953 ATCGCAACGTGAATATGACT
1 ATCGCAACGCGAATTTGACT
*
7993973 ATCGCAACGCAAATTTGACT
1 ATCGCAACGCGAATTTGACT
*
7993993 ATCGCAACGCAAATTTGACT
1 ATCGCAACGCGAATTTGACT
* *
7994013 ATCGCAACGTGAATTTGATT
1 ATCGCAACGCGAATTTGACT
*
7994033 ATCGCAACGGGAATTTGACT
1 ATCGCAACGCGAATTTGACT
*
7994053 ATCGCAACGAGAA----A--
1 ATCGCAACGCGAATTTGACT
* * *
7994067 ATCGCAAAGCGTATTAGACT
1 ATCGCAACGCGAATTTGACT
7994087 ATCGCAACGCGAA-TTGACT
1 ATCGCAACGCGAATTTGACT
*
7994106 TTCGC
1 ATCGC
7994111 GTTGCGATTT
Statistics
Matches: 171, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
14 10 0.06
16 1 0.01
18 1 0.01
19 9 0.05
20 150 0.88
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (20 bp):
ATCGCAACGCGAATTTGACT
Found at i:7994163 original size:20 final size:20
Alignment explanation
Indices: 7994100--7994177 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
7994090 GCAACGCGAA
*
7994100 TTGACTTTCGCGTTGCGATT
1 TTGACTTTCGCATTGCGATT
*
7994120 TTGGCTTTCGCATTGCGATT
1 TTGACTTTCGCATTGCGATT
7994140 TTGACTTTCGCATTGCGATT
1 TTGACTTTCGCATTGCGATT
* * *
7994160 TTGAGTTTAGCGTTGCGA
1 TTGACTTTCGCATTGCGA
7994178 AAGTGTACCT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.13, C:0.18, G:0.26, T:0.44
Consensus pattern (20 bp):
TTGACTTTCGCATTGCGATT
Found at i:7995757 original size:42 final size:42
Alignment explanation
Indices: 7995690--7995812 Score: 149
Period size: 42 Copynumber: 2.9 Consensus size: 42
7995680 GTGAATCGGG
* * *
7995690 CTCTTGAATGATGGGAG-GGACCTCTTCAACGATGACAGGGGC
1 CTCTTGAACGATAGGAGAGGA-CTCTTGAACGATGACAGGGGC
* ** *
7995732 CTCTTGAACGGTAGGAGAGGACTCTTGAGGGATGATAGGGGC
1 CTCTTGAACGATAGGAGAGGACTCTTGAACGATGACAGGGGC
* *
7995774 CTCTTGAATGATAGGAGAGGCCTCTTGAACGATGACAGG
1 CTCTTGAACGATAGGAGAGGACTCTTGAACGATGACAGG
7995813 TGAGTCGGGC
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 64 0.96
43 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.35, T:0.22
Consensus pattern (42 bp):
CTCTTGAACGATAGGAGAGGACTCTTGAACGATGACAGGGGC
Found at i:7995786 original size:18 final size:21
Alignment explanation
Indices: 7995690--7995802 Score: 74
Period size: 21 Copynumber: 5.4 Consensus size: 21
7995680 GTGAATCGGG
*
7995690 CTCTTGAATGATGGGAG-GGAC
1 CTCTTGAATGATAGGAGAGG-C
* * * *
7995711 CTCTTCAACGAT-GACAGGGGC
1 CTCTTGAATGATAG-GAGAGGC
* * *
7995732 CTCTTGAACGGTAGGAGAGGA
1 CTCTTGAATGATAGGAGAGGC
7995753 CTCTTGAGGGATGATA-G-G-GGC
1 CTCTTGA---ATGATAGGAGAGGC
7995774 CTCTTGAATGATAGGAGAGGC
1 CTCTTGAATGATAGGAGAGGC
7995795 CTCTTGAA
1 CTCTTGAA
7995803 CGATGACAGG
Statistics
Matches: 72, Mismatches: 11, Indels: 18
0.71 0.11 0.18
Matches are distributed among these distances:
18 6 0.08
19 1 0.01
20 2 0.03
21 54 0.75
22 4 0.06
23 1 0.01
24 4 0.06
ACGTcount: A:0.25, C:0.18, G:0.35, T:0.23
Consensus pattern (21 bp):
CTCTTGAATGATAGGAGAGGC
Found at i:7996313 original size:20 final size:20
Alignment explanation
Indices: 7996288--7996331 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
7996278 AATAGTTTAT
7996288 GAAACTTAAAAGCGCAACCC
1 GAAACTTAAAAGCGCAACCC
* *
7996308 GAAACTTAAAATCGCAACGC
1 GAAACTTAAAAGCGCAACCC
7996328 GAAA
1 GAAA
7996332 ATGACTATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.48, C:0.25, G:0.16, T:0.11
Consensus pattern (20 bp):
GAAACTTAAAAGCGCAACCC
Found at i:7996341 original size:20 final size:20
Alignment explanation
Indices: 7996318--7996365 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
7996308 GAAACTTAAA
*
7996318 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATAACT
**
7996338 ATCGCAACGCGAATTTAACT
1 ATCGCAACGCGAAAATAACT
7996358 ATCGCAAC
1 ATCGCAAC
7996366 AAGATAATCG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.38, C:0.27, G:0.17, T:0.19
Consensus pattern (20 bp):
ATCGCAACGCGAAAATAACT
Found at i:7996417 original size:33 final size:34
Alignment explanation
Indices: 7996338--7996423 Score: 93
Period size: 33 Copynumber: 2.6 Consensus size: 34
7996328 GAAAATGACT
** ** *
7996338 ATCGCAACGCGAATTTAACTATCGCAACAAGATA
1 ATCGCAACGCGAAACTAAAAATCGCAACAAGAAA
* *
7996372 ATCGCAATGCGAAA-TAAAAATCGCAACGAGAAA
1 ATCGCAACGCGAAACTAAAAATCGCAACAAGAAA
*
7996405 ATTGCAACGCGAAACTAAA
1 ATCGCAACGCGAAACTAAA
7996424 TTCGCGTTGC
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 27 0.63
34 16 0.37
ACGTcount: A:0.47, C:0.21, G:0.16, T:0.16
Consensus pattern (34 bp):
ATCGCAACGCGAAACTAAAAATCGCAACAAGAAA
Found at i:7996453 original size:20 final size:20
Alignment explanation
Indices: 7996424--7996461 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7996414 CGAAACTAAA
* *
7996424 TTCGCGTTGCGATTTTCATT
1 TTCGCATTGCAATTTTCATT
7996444 TTCGCATTGCAATTTTCA
1 TTCGCATTGCAATTTTCA
7996462 CGTTGTGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.47
Consensus pattern (20 bp):
TTCGCATTGCAATTTTCATT
Found at i:7996499 original size:33 final size:34
Alignment explanation
Indices: 7996428--7996503 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 34
7996418 ACTAAATTCG
*
7996428 CGTTGCGATTTTCATTTTCGCATTGCAATTTTCA
1 CGTTGCGATTTTCATTTTCGCATTGCAATTATCA
* * * *
7996462 CGTTGTGATTTTTA-TTTCGCATTGCGATTATCC
1 CGTTGCGATTTTCATTTTCGCATTGCAATTATCA
7996495 CGTTGCGAT
1 CGTTGCGAT
7996504 AGTCAAATTC
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
33 24 0.67
34 12 0.33
ACGTcount: A:0.16, C:0.20, G:0.18, T:0.46
Consensus pattern (34 bp):
CGTTGCGATTTTCATTTTCGCATTGCAATTATCA
Found at i:7996520 original size:20 final size:20
Alignment explanation
Indices: 7996495--7996563 Score: 104
Period size: 20 Copynumber: 3.5 Consensus size: 20
7996485 GCGATTATCC
*
7996495 CGTTGCGATAGTCAAATTCG
1 CGTTGCGATAGTCAATTTCG
7996515 CGTTGCGATAGTC-ATTTCCG
1 CGTTGCGATAGTCAATTT-CG
*
7996535 CGTTGCGATAGTCATTTTCG
1 CGTTGCGATAGTCAATTTCG
7996555 CGTTGCGAT
1 CGTTGCGAT
7996564 TTTAAGTTTC
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
19 3 0.07
20 39 0.87
21 3 0.07
ACGTcount: A:0.17, C:0.22, G:0.26, T:0.35
Consensus pattern (20 bp):
CGTTGCGATAGTCAATTTCG
Found at i:7996521 original size:34 final size:37
Alignment explanation
Indices: 7996477--7996564 Score: 101
Period size: 40 Copynumber: 2.4 Consensus size: 37
7996467 TGATTTTTAT
*
7996477 TTCGCATTGCGATT-A-TCC-CGTTGCGATAGTCAAA
1 TTCGCGTTGCGATTCATTCCGCGTTGCGATAGTCAAA
**
7996511 TTCGCGTTGCGATAGTCATTTCCGCGTTGCGATAGTCATT
1 TTCGCGTTGCGAT--TCA-TTCCGCGTTGCGATAGTCAAA
7996551 TTCGCGTTGCGATT
1 TTCGCGTTGCGATT
7996565 TTAAGTTTCG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
34 12 0.27
36 1 0.02
37 1 0.02
38 1 0.02
39 3 0.07
40 27 0.60
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.36
Consensus pattern (37 bp):
TTCGCGTTGCGATTCATTCCGCGTTGCGATAGTCAAA
Found at i:7998503 original size:20 final size:20
Alignment explanation
Indices: 7998480--7998599 Score: 130
Period size: 20 Copynumber: 6.4 Consensus size: 20
7998470 TCTGAAACTT
7998480 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
7998500 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
7998520 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
**
7998540 ACTATCGC-A-ACG---A-G
1 AAAATCGCAACACGAAAATG
* *
7998554 ATAATCGCAACGCG-AAATG
1 AAAATCGCAACACGAAAATG
* *
7998573 AAAATCGCAACGCGAAACT-
1 AAAATCGCAACACGAAAATG
7998592 AAAATCGC
1 AAAATCGC
7998600 GTTGCGATTT
Statistics
Matches: 87, Mismatches: 7, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
14 7 0.08
15 2 0.02
16 2 0.02
18 4 0.05
19 23 0.26
20 49 0.56
ACGTcount: A:0.49, C:0.23, G:0.17, T:0.12
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:7999221 original size:20 final size:20
Alignment explanation
Indices: 7999198--7999242 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
7999188 ATTTTGTATT
7999198 ATCGCAACGCGATAGTCAGA
1 ATCGCAACGCGATAGTCAGA
**
7999218 ATCGCATTGCGATAGTCAGA
1 ATCGCAACGCGATAGTCAGA
7999238 ATCGC
1 ATCGC
7999243 GTTGCGATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCGATAGTCAGA
Found at i:7999247 original size:20 final size:20
Alignment explanation
Indices: 7999206--7999250 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
7999196 TTATCGCAAC
7999206 GCGATAGTCAGAATCGCATT
1 GCGATAGTCAGAATCGCATT
*
7999226 GCGATAGTCAGAATCGCGTT
1 GCGATAGTCAGAATCGCATT
7999246 GCGAT
1 GCGAT
7999251 TTACATATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (20 bp):
GCGATAGTCAGAATCGCATT
Found at i:7999250 original size:40 final size:40
Alignment explanation
Indices: 7999206--7999289 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
7999196 TTATCGCAAC
*
7999206 GCGATAGT-CAGAATCGCATTGCGATAGTCAGAATCGCGTT
1 GCGAT-GTACAGAATCGCATTGCGATAGTCAAAATCGCGTT
* * * * *
7999246 GCGATTTACATATTCGTATTGCGATTGTCAAAATCGCGTT
1 GCGATGTACAGAATCGCATTGCGATAGTCAAAATCGCGTT
7999286 GCGA
1 GCGA
7999290 ATCTGGAAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
39 1 0.03
40 36 0.97
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (40 bp):
GCGATGTACAGAATCGCATTGCGATAGTCAAAATCGCGTT
Found at i:8000120 original size:15 final size:15
Alignment explanation
Indices: 8000082--8000129 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
8000072 TTTTCTTTGA
*
8000082 TATTGAAAAATAAA-
1 TATTTAAAAATAAAT
*
8000096 TA-TT-AAAATAATT
1 TATTTAAAAATAAAT
8000109 TATTTAAAAATAAAT
1 TATTTAAAAATAAAT
8000124 TATTTA
1 TATTTA
8000130 TTATATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 7 0.25
13 3 0.11
14 4 0.14
15 14 0.50
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
TATTTAAAAATAAAT
Found at i:8000184 original size:22 final size:23
Alignment explanation
Indices: 8000158--8000204 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
8000148 ATAAAAATAT
*
8000158 TTAAAAAT-ATAAACAAATAAAA
1 TTAAAAATAATAAAAAAATAAAA
*
8000180 TT-AAAATAATAAAAAAATACAA
1 TTAAAAATAATAAAAAAATAAAA
8000202 TTA
1 TTA
8000205 GAACGATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (23 bp):
TTAAAAATAATAAAAAAATAAAA
Found at i:8001342 original size:16 final size:16
Alignment explanation
Indices: 8001321--8001361 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
8001311 CCGTTGGCTG
*
8001321 AGGCGGCTGGAGGTAA
1 AGGCGGCTGGAGGCAA
*
8001337 AGGCGGCTGGAGGCAG
1 AGGCGGCTGGAGGCAA
8001353 AGGCGGCTG
1 AGGCGGCTG
8001362 CGCATGGGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.20, C:0.17, G:0.54, T:0.10
Consensus pattern (16 bp):
AGGCGGCTGGAGGCAA
Found at i:8001494 original size:3 final size:3
Alignment explanation
Indices: 8001486--8001545 Score: 93
Period size: 3 Copynumber: 20.0 Consensus size: 3
8001476 TATATATATT
* * *
8001486 TAA TAA TAA TAA TAA TAT TTA TAA TAA TAA TAA TAA TAA TAA TTA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8001534 TAA TAA TAA TAA
1 TAA TAA TAA TAA
8001546 ATAAATAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:8001511 original size:18 final size:18
Alignment explanation
Indices: 8001460--8001538 Score: 86
Period size: 18 Copynumber: 4.1 Consensus size: 18
8001450 TTTTTTTTAT
8001460 TATTTATATATATATATATATA
1 TATTTATA-ATA-ATA-ATA-A
8001482 TATTTAATAATAATAATAA
1 TATTT-ATAATAATAATAA
8001501 TATTTATAATAATAATAA
1 TATTTATAATAATAATAA
* * *
8001519 TAATAATAATTATAATAA
1 TATTTATAATAATAATAA
8001537 TA
1 TA
8001539 ATAATAAATA
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
18 30 0.57
19 6 0.11
20 3 0.06
21 3 0.06
22 8 0.15
23 3 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TATTTATAATAATAATAA
Found at i:8002592 original size:13 final size:13
Alignment explanation
Indices: 8002571--8002605 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
8002561 ATTTGTGACT
*
8002571 TAAGAGGTTAAAA
1 TAAGTGGTTAAAA
8002584 TAAGTGGTTAAAA
1 TAAGTGGTTAAAA
8002597 TAAGTGGTT
1 TAAGTGGTT
8002606 TCTCTTTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.31
Consensus pattern (13 bp):
TAAGTGGTTAAAA
Found at i:8004097 original size:36 final size:36
Alignment explanation
Indices: 8004050--8004128 Score: 140
Period size: 36 Copynumber: 2.2 Consensus size: 36
8004040 CTTTTCATGG
* *
8004050 TGAACTTCTTCTTTTTCAGATTAGTTCTTCTCATTA
1 TGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTA
8004086 TGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTA
1 TGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTA
8004122 TGAACTT
1 TGAACTT
8004129 TCTCTGGAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.49
Consensus pattern (36 bp):
TGAACTTCTTCTTCTTCAGATGAGTTCTTCTCATTA
Found at i:8004406 original size:113 final size:113
Alignment explanation
Indices: 8004074--8004734 Score: 1005
Period size: 113 Copynumber: 5.9 Consensus size: 113
8004064 TTCAGATTAG
8004074 TTCTTCTCATTATGAACTTC-T--T-CTTCTTCAGATGAGTTCTTCTCATTATGAACT-TTCTCT
1 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTT-TCT
* * *
8004134 GGAAAAGCTGATCCATCAAGTGATGGA-TTAGAACAAAAGGTTGAACAAA
65 GGAAAAGATAATCCATCAAGTGATAGATTTA-AACAAAAGGTTGAACAAA
* * **
8004183 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTAGGAACTCTAC
1 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACTCTTT
* * * * * * * *
8004248 CTGGCAATGTTGATCCATCAAATGAT-GAATTCAAACAAAAAGTTGAACAAG
63 CTGGAAAAGATAATCCATCAAGTGATAG-ATTTAAACAAAAGGTTGAACAAA
* * *
8004299 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCATATGAATACTTCTCATTATGAACTCTTTCTG
1 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTTCTG
8004364 GAAAAGATAATCCATCAAGTGATAGATTTAAACAAAAGGTTGAACAAA
66 GAAAAGATAATCCATCAAGTGATAGATTTAAACAAAAGGTTGAACAAA
*
8004412 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC-TACTT
1 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTTC-T
*
8004476 GGAAAAGATAATCCATCAAGTGATAGATTTAAACAAAAGGTTGAATAAA
65 GGAAAAGATAATCCATCAAGTGATAGATTTAAACAAAAGGTTGAACAAA
**
8004525 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
1 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTTCTG
8004590 GAAAAGATAATCCATCAAGTGATAGATTTAAACAAAAGGTTGAACAAA
66 GAAAAGATAATCCATCAAGTGATAGATTTAAACAAAAGGTTGAACAAA
8004638 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTTCTG
1 TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTTCTG
8004703 GAAAAGATAATCCATCAAGTGATAGATTTAAA
66 GAAAAGATAATCCATCAAGTGATAGATTTAAA
8004735 TCTTTGCTAA
Statistics
Matches: 504, Mismatches: 35, Indels: 22
0.90 0.06 0.04
Matches are distributed among these distances:
109 20 0.04
110 1 0.00
112 3 0.01
113 380 0.75
114 2 0.00
115 1 0.00
116 94 0.19
117 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (113 bp):
TTCTTCTCATTATGAACTTCTTCATCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTTTCTG
GAAAAGATAATCCATCAAGTGATAGATTTAAACAAAAGGTTGAACAAA
Found at i:8005540 original size:92 final size:83
Alignment explanation
Indices: 8005460--8005763 Score: 475
Period size: 83 Copynumber: 3.5 Consensus size: 83
8005450 CCTACTGAAT
8005460 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTTCAACTTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTTCAACTTCAA
*
8005525 TGATTGGTTTTGGGGTTCATACTAAAC
66 TGATTGG---T----TT--TACCAAAC
8005552 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTG-GCAATATTCATCTTTCAACTTC
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA-TGAGCAA-ATTCATCTTTCAACTTC
8005616 AATGATTGGTTTTACCAAAC
64 AATGATTGGTTTTACCAAAC
*
8005636 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTTCAAATTCAA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTTCAACTTCAA
8005701 TGATTGGTTTTACCAAAC
66 TGATTGGTTTTACCAAAC
*
8005719 CAGATCAGATAACTCAAAGAACACTTCTAGAAGATGCTATGAGCA
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCA
8005764 CCTGGCATTT
Statistics
Matches: 206, Mismatches: 3, Indels: 15
0.92 0.01 0.07
Matches are distributed among these distances:
83 82 0.40
84 50 0.24
86 2 0.01
90 1 0.00
92 43 0.21
93 28 0.14
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (83 bp):
CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCAAATTCATCTTTCAACTTCAA
TGATTGGTTTTACCAAAC
Found at i:8006933 original size:9 final size:9
Alignment explanation
Indices: 8006916--8006983 Score: 61
Period size: 9 Copynumber: 7.8 Consensus size: 9
8006906 TTGACCCCCC
8006916 TTTTT-TCT
1 TTTTTCTCT
8006924 TTTTTCTCT
1 TTTTTCTCT
8006933 TTTTT-T-T
1 TTTTTCTCT
* *
8006940 TCTCTCTTCT
1 TTTTTC-TCT
*
8006950 TTTTTTTCT
1 TTTTTCTCT
*
8006959 TTTTTTTCT
1 TTTTTCTCT
*
8006968 TTTTTTTCT
1 TTTTTCTCT
8006977 TTTTTCT
1 TTTTTCT
8006984 TCAAGCATAA
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
7 4 0.08
8 6 0.12
9 36 0.72
10 4 0.08
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTCTCT
Found at i:8006936 original size:16 final size:16
Alignment explanation
Indices: 8006915--8006984 Score: 76
Period size: 14 Copynumber: 4.6 Consensus size: 16
8006905 CTTGACCCCC
8006915 CTTTTTTCTTTTTTCT
1 CTTTTTTCTTTTTTCT
*
8006931 C-TTTTT-TTTTCTCT
1 CTTTTTTCTTTTTTCT
*
8006945 C-TTCTT-TTTTTTCT
1 CTTTTTTCTTTTTTCT
* *
8006959 TTTTTTTCTTTTTTTT
1 CTTTTTTCTTTTTTCT
8006975 CTTTTTTCTT
1 CTTTTTTCTT
8006985 CAAGCATAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
14 19 0.42
15 9 0.20
16 17 0.38
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (16 bp):
CTTTTTTCTTTTTTCT
Found at i:8006940 original size:12 final size:12
Alignment explanation
Indices: 8006923--8006974 Score: 63
Period size: 11 Copynumber: 4.3 Consensus size: 12
8006913 CCCTTTTTTC
8006923 TTTTTTCTCTTT
1 TTTTTTCTCTTT
8006935 TTTTTTCTCTCTT
1 TTTTTTCTCT-TT
*
8006948 CTTTTTTTTC-TT
1 -TTTTTTCTCTTT
8006960 TTTTTTCT-TTT
1 TTTTTTCTCTTT
8006971 TTTT
1 TTTT
8006975 CTTTTTTCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
11 13 0.37
12 12 0.34
13 2 0.06
14 8 0.23
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTCTCTTT
Found at i:8006949 original size:26 final size:27
Alignment explanation
Indices: 8006920--8006983 Score: 85
Period size: 26 Copynumber: 2.4 Consensus size: 27
8006910 CCCCCCTTTT
8006920 TTCTTTTTTCTCTTTTTTTT-TCTCTC
1 TTCTTTTTTCTCTTTTTTTTCTCTCTC
* * * *
8006946 TTCTTTTTTTTCTTTTTTTTCTTTTTT
1 TTCTTTTTTCTCTTTTTTTTCTCTCTC
8006973 TTCTTTTTTCT
1 TTCTTTTTTCT
8006984 TCAAGCATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 19 0.59
27 13 0.41
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (27 bp):
TTCTTTTTTCTCTTTTTTTTCTCTCTC
Found at i:8017726 original size:6 final size:7
Alignment explanation
Indices: 8017707--8017731 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8017697 TAAATATATG
8017707 AATTTTT
1 AATTTTT
8017714 AATTTTT
1 AATTTTT
8017721 AATTTTT
1 AATTTTT
8017728 AATT
1 AATT
8017732 AATAGAGACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
AATTTTT
Found at i:8018369 original size:15 final size:15
Alignment explanation
Indices: 8018331--8018378 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
8018321 TTTTCTTTGA
*
8018331 TATTGAAAAATAAA-
1 TATTTAAAAATAAAT
*
8018345 TA-TT-AAAATAATT
1 TATTTAAAAATAAAT
8018358 TATTTAAAAATAAAT
1 TATTTAAAAATAAAT
8018373 TATTTA
1 TATTTA
8018379 TTATATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 7 0.25
13 3 0.11
14 4 0.14
15 14 0.50
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
TATTTAAAAATAAAT
Found at i:8018433 original size:22 final size:23
Alignment explanation
Indices: 8018407--8018453 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
8018397 ATAAAAATAT
*
8018407 TTAAAAAT-ATAAACAAATAAAA
1 TTAAAAATAATAAAAAAATAAAA
8018429 TT-AAAATAATAAAAAAATAAAA
1 TTAAAAATAATAAAAAAATAAAA
8018451 TTA
1 TTA
8018454 GAACGATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (23 bp):
TTAAAAATAATAAAAAAATAAAA
Found at i:8019594 original size:16 final size:16
Alignment explanation
Indices: 8019573--8019614 Score: 84
Period size: 16 Copynumber: 2.6 Consensus size: 16
8019563 ACCGTTGGCT
8019573 GAGGCGGCTGGAGGCA
1 GAGGCGGCTGGAGGCA
8019589 GAGGCGGCTGGAGGCA
1 GAGGCGGCTGGAGGCA
8019605 GAGGCGGCTG
1 GAGGCGGCTG
8019615 CGCATGGGGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.17, C:0.19, G:0.57, T:0.07
Consensus pattern (16 bp):
GAGGCGGCTGGAGGCA
Found at i:8019744 original size:3 final size:3
Alignment explanation
Indices: 8019736--8019788 Score: 79
Period size: 3 Copynumber: 17.3 Consensus size: 3
8019726 ATATATATAT
* *
8019736 ATA ATA ATA ATA ATA TTT ATA ATA ATA ATA ATA ATA ATTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA
8019782 ATA ATA A
1 ATA ATA A
8019789 ATAAATAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 42 0.93
4 3 0.07
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
ATA
Found at i:8020835 original size:13 final size:13
Alignment explanation
Indices: 8020814--8020848 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
8020804 ATTTGTGACT
*
8020814 TAAGAGGTTAAAA
1 TAAGTGGTTAAAA
8020827 TAAGTGGTTAAAA
1 TAAGTGGTTAAAA
8020840 TAAGTGGTT
1 TAAGTGGTT
8020849 TCTCTTTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.26, T:0.31
Consensus pattern (13 bp):
TAAGTGGTTAAAA
Found at i:8025075 original size:21 final size:21
Alignment explanation
Indices: 8025051--8025112 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
8025041 CAGATACCAT
8025051 CATCGTCGATTT-AGATGTCAC
1 CATCGT-GATTTCAGATGTCAC
*
8025072 CATCGTTATTTCAGATGTCAC
1 CATCGTGATTTCAGATGTCAC
* *
8025093 CATCGTTATTTCAAATGTCA
1 CATCGTGATTTCAGATGTCA
8025113 TCACCGCTAG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.11
21 34 0.89
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (21 bp):
CATCGTGATTTCAGATGTCAC
Found at i:8025661 original size:27 final size:27
Alignment explanation
Indices: 8025621--8025676 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
8025611 GTTTTTTATA
* *
8025621 TTTTTTTATTATGTCTTTATATTAAGT
1 TTTTTTTATAATGTATTTATATTAAGT
8025648 TTTTTTTATAATGTATTTATATTAAGT
1 TTTTTTTATAATGTATTTATATTAAGT
8025675 TT
1 TT
8025677 GTTGTATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.25, C:0.02, G:0.07, T:0.66
Consensus pattern (27 bp):
TTTTTTTATAATGTATTTATATTAAGT
Found at i:8025688 original size:27 final size:27
Alignment explanation
Indices: 8025627--8025688 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
8025617 TATATTTTTT
* * *
8025627 TATTATGTCTTTATATTAAGTTTTTTT
1 TATTATGTATTTATATTAAGTTTGTTG
*
8025654 TATAATGTATTTATATTAAGTTTGTTG
1 TATTATGTATTTATATTAAGTTTGTTG
8025681 TATTATGT
1 TATTATGT
8025689 TTAATGTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.61
Consensus pattern (27 bp):
TATTATGTATTTATATTAAGTTTGTTG
Found at i:8026410 original size:26 final size:27
Alignment explanation
Indices: 8026358--8026413 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
8026348 TTTTAATCTC
*
8026358 TTTAATGTAATGTTTTATGGTTTGTTG
1 TTTAATGTAATGTTGTATGGTTTGTTG
8026385 TTTAATGTAATG-TGTAT-GTTTCGTTG
1 TTTAATGTAATGTTGTATGGTTT-GTTG
8026411 TTT
1 TTT
8026414 TTATAATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 4 0.15
26 11 0.41
27 12 0.44
ACGTcount: A:0.18, C:0.02, G:0.21, T:0.59
Consensus pattern (27 bp):
TTTAATGTAATGTTGTATGGTTTGTTG
Found at i:8027534 original size:170 final size:166
Alignment explanation
Indices: 8027189--8027774 Score: 520
Period size: 170 Copynumber: 3.5 Consensus size: 166
8027179 CCCCAAAATT
* * ** * * **
8027189 GGAACAATTATACATGTATATAATTGAA-TGAAATATACAAATAAAATCTGGGAAAAA--AGGCG
1 GGAACAATTATATATGCATATAATT-AACTGAAATATGTAGATAAAATATGACAAAAAGGAGGCG
* * * *
8027251 CATTGCACAAGAAGTGCATTCATCTTTTCAAAGAATCTCT-CTCATGTCATAGTGTTTCATCCCA
65 CATTGCACAAGAAGTGCATTCACCTTTTCAGAGAATCTTTGC-CATGTCATAGTGTCTCATCCCA
8027315 TCAAACATAAATTGCATTA-AAGTGAATAGTAT-CCCGACTG
129 TCAAACATAAATTG-A-TAGAAGTGAATA-T-TGCCCGACTG
* *
8027355 GGAACAATTATATATGTATATAATTAACTGAAATATGTAGATAAAATCTGACAAAAATGGAGGGC
1 GGAACAATTATATATGCATATAATTAACTGAAATATGTAGATAAAATATGACAAAAA-GGA-GGC
* * * * * * *
8027420 ACATTTCACAATAAGTGCCTTCGCCTTTTGAGAGAATCTTTGCCATGTCTTAGTGTCTCATCCCA
64 GCATTGCACAAGAAGTGCATTCACCTTTTCAGAGAATCTTTGCCATGTCATAGTGTCTCATCCCA
* * **
8027485 ACAAACATAAATTAGATAGATGTGAATATTGCCTTAACTG
129 TCAAACATAAATT-GATAGAAGTGAATATTGCC-CGACTG
* * *
8027525 GGCACAATTATATTTGCATATAATTGACTGAAATATGTAGATAAAATATGACAAAAAGGGAAGGC
1 GGAACAATTATATATGCATATAATTAACTGAAATATGTAGATAAAATATGACAAAAA-GG-AGGC
* ** * * * * * * **
8027590 GCGTTGCACAAGAAGCACGTTCTCCTTTTTAGAGAATCTTTGTCACGTCATAGTATCTCATCCTG
64 GCATTGCACAAGAAGTGCATTCACCTTTTCAGAGAATCTTTGCCATGTCATAGTGTCTCATCCCA
* *
8027655 TCAAACATAAATTGGATTGACA-TGAATAGTGCCCCGACTG
129 TCAAACATAAATT-GATAGA-AGTGAATATTG-CCCGACTG
* * * * * * *
8027695 GGAACAATTATATCTACATAAAATTGACTAAAATAAGTAGATAAAATATGACAAAAAATGAAGGC
1 GGAACAATTATATATGCATATAATTAACTGAAATATGTAGATAAAATATGAC-AAAAA-GGAGGC
* *
8027760 GCGTTACACAAGAAG
64 GCATTGCACAAGAAG
8027775 CATTTTCTCC
Statistics
Matches: 348, Mismatches: 58, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
165 2 0.01
166 48 0.14
168 1 0.00
169 6 0.02
170 280 0.80
171 11 0.03
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (166 bp):
GGAACAATTATATATGCATATAATTAACTGAAATATGTAGATAAAATATGACAAAAAGGAGGCGC
ATTGCACAAGAAGTGCATTCACCTTTTCAGAGAATCTTTGCCATGTCATAGTGTCTCATCCCATC
AAACATAAATTGATAGAAGTGAATATTGCCCGACTG
Found at i:8027775 original size:170 final size:170
Alignment explanation
Indices: 8027282--8027798 Score: 561
Period size: 170 Copynumber: 3.0 Consensus size: 170
8027272 ATCTTTTCAA
* * * * *
8027282 AGAATCTCTCTCATGTCATAGTGTTTCATCCCATCAAACATAAATTGCATT-AAAGTGAATAGTA
1 AGAATCTTTGTCATGTCATAGTGTCTCATCCCATCAAACATAAATTGGATTGAAA-TGAATAGTG
* * * *
8027346 TCCCGACTGGGAACAATTATATATGTATATAATTAACTGAAATATGTAGATAAAATCTGAC-AAA
65 CCCCGACTGGGAACAATTATATATGCATATAATTGACTGAAATATGTAGATAAAATATGACAAAA
* * * * * ** * *
8027410 AATGGAGGGCACATTTCACAATAAGTGCCTTCGCCTTTTGAG
130 AAT-GAAGGCGCGTTACACAAGAAGCACCTTCTCCTTTTTAG
* * * * * ** *
8027452 AGAATCTTTGCCATGTCTTAGTGTCTCATCCCAACAAACATAAATTAGATAGATGTGAATATTGC
1 AGAATCTTTGTCATGTCATAGTGTCTCATCCCATCAAACATAAATTGGATTGAAATGAATAGTGC
*** * *
8027517 CTTAACTGGGCACAATTATATTTGCATATAATTGACTGAAATATGTAGATAAAATATGACAAAAA
66 CCCGACTGGGAACAATTATATATGCATATAATTGACTGAAATATGTAGATAAAATATGACAAAAA
** * *
8027582 GGGAAGGCGCGTTGCACAAGAAGCACGTTCTCCTTTTTAG
131 ATGAAGGCGCGTTACACAAGAAGCACCTTCTCCTTTTTAG
* * ** *
8027622 AGAATCTTTGTCACGTCATAGTATCTCATCCTGTCAAACATAAATTGGATTGACATGAATAGTGC
1 AGAATCTTTGTCATGTCATAGTGTCTCATCCCATCAAACATAAATTGGATTGAAATGAATAGTGC
* * * * *
8027687 CCCGACTGGGAACAATTATATCTACATAAAATTGACTAAAATAAGTAGATAAAATATGACAAAAA
66 CCCGACTGGGAACAATTATATATGCATATAATTGACTGAAATATGTAGATAAAATATGACAAAAA
** *
8027752 ATGAAGGCGCGTTACACAAGAAGCATTTTCTCCTTTTTTG
131 ATGAAGGCGCGTTACACAAGAAGCACCTTCTCCTTTTTAG
*
8027792 AAAATCT
1 AGAATCT
8027799 CTACCATGTC
Statistics
Matches: 283, Mismatches: 62, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
170 278 0.98
171 5 0.02
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (170 bp):
AGAATCTTTGTCATGTCATAGTGTCTCATCCCATCAAACATAAATTGGATTGAAATGAATAGTGC
CCCGACTGGGAACAATTATATATGCATATAATTGACTGAAATATGTAGATAAAATATGACAAAAA
ATGAAGGCGCGTTACACAAGAAGCACCTTCTCCTTTTTAG
Found at i:8032938 original size:19 final size:20
Alignment explanation
Indices: 8032895--8032940 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
8032885 GACTATGCTG
* *
8032895 GAAATTAATGTTATAGTGTT
1 GAAATTGATGTTAGAGTGTT
8032915 GAAATTGATGTTAGAGTG-T
1 GAAATTGATGTTAGAGTGTT
8032934 GAAATTG
1 GAAATTG
8032941 GGCCATTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.39
Consensus pattern (20 bp):
GAAATTGATGTTAGAGTGTT
Found at i:8034096 original size:115 final size:115
Alignment explanation
Indices: 8033886--8034117 Score: 410
Period size: 115 Copynumber: 2.0 Consensus size: 115
8033876 ATTGTGATAA
*
8033886 ATTTTGGGATCAAACCAAATCGAAAGCTAAAGATCAAGTTAAAGCTTACTGTGACTTATATTTTG
1 ATTTTGGGATCAAACCAAATCGAAAGCAAAAGATCAAGTTAAAGCTTACTGTGACTTATATTTTG
*
8033951 ATTTGTATATAAAGTATCAAACTGAATGCAATGCATGCATAATATTATAC
66 ACTTGTATATAAAGTATCAAACTGAATGCAATGCATGCATAATATTATAC
* *
8034001 ATTTTGGGATCGAACCAAATCGAAAGCAAAAGATCAAGTTAAAGCTTAGTGTGACTTATATTTTG
1 ATTTTGGGATCAAACCAAATCGAAAGCAAAAGATCAAGTTAAAGCTTACTGTGACTTATATTTTG
* *
8034066 ACTTGTATATAAAGTATCAAATTGAGTGCAATGCATGCATAATATTATAC
66 ACTTGTATATAAAGTATCAAACTGAATGCAATGCATGCATAATATTATAC
8034116 AT
1 AT
8034118 GGATGTTTTA
Statistics
Matches: 111, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
115 111 1.00
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (115 bp):
ATTTTGGGATCAAACCAAATCGAAAGCAAAAGATCAAGTTAAAGCTTACTGTGACTTATATTTTG
ACTTGTATATAAAGTATCAAACTGAATGCAATGCATGCATAATATTATAC
Found at i:8034534 original size:70 final size:70
Alignment explanation
Indices: 8034421--8034564 Score: 218
Period size: 70 Copynumber: 2.1 Consensus size: 70
8034411 CAGCAGACCG
8034421 CATATTCGGTTTAGCACTAAAGTGTATACCCAAGACACTTAGTGTAGATGGTAGG-CACGACCTT
1 CATATTCGGTTTAGCACTAAAGTGTATACCCAAGACACTTAGTGTAGATGG-AGGCCACGACCTT
8034485 ATGTGT
65 ATGTGT
* * * * * *
8034491 CATATTTGGTTTAGCACTAGAGTGTATACCCAAGACACTTAGTGTAGGTGGCGGCCATGGCCTTA
1 CATATTCGGTTTAGCACTAAAGTGTATACCCAAGACACTTAGTGTAGATGGAGGCCACGACCTTA
8034556 TGTGT
66 TGTGT
8034561 CATA
1 CATA
8034565 CTTGATGAGT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
69 2 0.03
70 65 0.97
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (70 bp):
CATATTCGGTTTAGCACTAAAGTGTATACCCAAGACACTTAGTGTAGATGGAGGCCACGACCTTA
TGTGT
Found at i:8035328 original size:64 final size:63
Alignment explanation
Indices: 8035260--8035439 Score: 215
Period size: 65 Copynumber: 2.8 Consensus size: 63
8035250 TTAGACCCTT
*
8035260 AGTGCATCGGTGCACTAAGAGTGCATCGATGCATGAAATGCATTCGATGTTTCAAAATAACT-AG
1 AGTGCATCGATGCACT-AGAGTGCATCGATGCATGAAATGCATTCGATGTTTCAAAA-AACTCAG
*
8035324 AGTGCATCGATGCATGGCT-G-GTGCATCGATGCATGAAATGCATTCGATGTTTTCATAAAACTC
1 AGTGCATCGATGCA---CTAGAGTGCATCGATGCATGAAATGCATTCGATG-TTTCAAAAAACTC
*
8035387 TG
62 AG
* *
8035389 AGTGCATCGATGCA-TAGTATGTGCATCGGTGCATGAAATGCATTCAATGTT
1 AGTGCATCGATGCACTAG-A-GTGCATCGATGCATGAAATGCATTCGATGTT
8035440 CAATTTATTC
Statistics
Matches: 102, Mismatches: 5, Indels: 18
0.82 0.04 0.14
Matches are distributed among these distances:
61 1 0.01
62 1 0.01
64 48 0.47
65 50 0.49
67 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (63 bp):
AGTGCATCGATGCACTAGAGTGCATCGATGCATGAAATGCATTCGATGTTTCAAAAAACTCAG
Found at i:8035413 original size:65 final size:65
Alignment explanation
Indices: 8035280--8035439 Score: 227
Period size: 65 Copynumber: 2.5 Consensus size: 65
8035270 TGCACTAAGA
*
8035280 GTGCATCGATGCATGAAATGCATTCGATG-TTTCAAAATAACTAGAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTCAAAATAACTAGAGTGCATCGATGCATAGCTG
* *
8035344 GTGCATCGATGCATGAAATGCATTCGATGTTTTCATAA-AACTCTGAGTGCATCGATGCATAG-T
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTCAAAATAACT-AGAGTGCATCGATGCATAGCT
*
8035407 AT
65 -G
* *
8035409 GTGCATCGGTGCATGAAATGCATTCAATGTT
1 GTGCATCGATGCATGAAATGCATTCGATGTT
8035440 CAATTTATTC
Statistics
Matches: 87, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
64 34 0.39
65 53 0.61
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATGAAATGCATTCGATGTTTTCAAAATAACTAGAGTGCATCGATGCATAGCTG
Found at i:8035478 original size:65 final size:64
Alignment explanation
Indices: 8035280--8035487 Score: 221
Period size: 65 Copynumber: 3.2 Consensus size: 64
8035270 TGCACTAAGA
* * *
8035280 GTGCATCGATGCATGAAATGCATTCGATGTTTCAAAATAACTA-GAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATGAAATGCATTCGATGTTTC-AATTAACCATGAGTGCATCGATGCATGGTTG
* *
8035344 GTGCATCGATGCATGAAATGCATTCGATGTTTTC-ATAAAACTC-TGAGTGCATCGATGCATAGT
1 GTGCATCGATGCATGAAATGCATTCGATG-TTTCAAT-TAAC-CATGAGTGCATCGATGCATGGT
8035407 AT-
63 -TG
* * *
8035409 GTGCATCGGTGCATGAAATGCATTCAATG-TTCAATTTATTCCATG-GTGCATCGATGCATGGAT
1 GTGCATCGATGCATGAAATGCATTCGATGTTTCAA-TTA-ACCATGAGTGCATCGATGCATGG-T
8035472 TG
63 TG
*
8035474 GTGCATCGGTGCAT
1 GTGCATCGATGCAT
8035488 CACTCTGAAA
Statistics
Matches: 123, Mismatches: 10, Indels: 21
0.80 0.06 0.14
Matches are distributed among these distances:
63 4 0.03
64 51 0.41
65 67 0.54
66 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (64 bp):
GTGCATCGATGCATGAAATGCATTCGATGTTTCAATTAACCATGAGTGCATCGATGCATGGTTG
Found at i:8038166 original size:21 final size:22
Alignment explanation
Indices: 8038111--8038191 Score: 76
Period size: 23 Copynumber: 3.6 Consensus size: 22
8038101 ACCCGATGAA
8038111 TGCATCGATGCACATTCAAGGCG
1 TGCATCGATGCACATTC-AGGCG
* *
8038134 TGCATCGGTGCACATTCATG-G
1 TGCATCGATGCACATTCAGGCG
* *
8038155 TGTATCGATGCAGATTCAAAGG-G
1 TGCATCGATGCACATTC--AGGCG
8038178 ATGCATCGATGCAC
1 -TGCATCGATGCAC
8038192 TTTTAAGTGT
Statistics
Matches: 47, Mismatches: 8, Indels: 5
0.78 0.13 0.08
Matches are distributed among these distances:
21 15 0.32
22 2 0.04
23 19 0.40
24 11 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (22 bp):
TGCATCGATGCACATTCAGGCG
Found at i:8038202 original size:44 final size:44
Alignment explanation
Indices: 8038114--8038208 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 44
8038104 CGATGAATGC
* *
8038114 ATCGATGCACATTCAAGGCGTGCATCGGTGCACATTCATGGTGT
1 ATCGATGCACATTCAAGGCGTGCATCGATGCACATTCATAGTGT
* * *
8038158 ATCGATGCAGATTCAAAGG-GATGCATCGATGCACTTTTA-AGTGT
1 ATCGATGCACATTC-AAGGCG-TGCATCGATGCACATTCATAGTGT
8038202 ATCGATG
1 ATCGATG
8038209 TATGCAGTGC
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
44 25 0.57
45 19 0.43
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (44 bp):
ATCGATGCACATTCAAGGCGTGCATCGATGCACATTCATAGTGT
Found at i:8043980 original size:64 final size:63
Alignment explanation
Indices: 8043909--8044088 Score: 206
Period size: 65 Copynumber: 2.8 Consensus size: 63
8043899 TTAGACCCTT
* *
8043909 AGTGCATCGGTGCACTAAGAGTGCATCGATTCATGAAATGCATTCGATGTTTCAAAATAACCA-G
1 AGTGCATCGATGCACT-AGAGTGCATCGATGCATGAAATGCATTCGATGTTTCAAAA-AACCATG
* * *
8043973 AGTGCATCGATGCATGGCT-G-GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAACTA
1 AGTGCATCGATGCA---CTAGAGTGCATCGATGCATGAAATGCATTCGATG-TTTCAAAAAACCA
8044036 TG
62 TG
*
8044038 AGTGCATCGATGCA-TAGTATGTGCATCGGTGCATGAAATGCATTCGATGTT
1 AGTGCATCGATGCACTAG-A-GTGCATCGATGCATGAAATGCATTCGATGTT
8044089 CAATTTATTT
Statistics
Matches: 100, Mismatches: 7, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
61 1 0.01
62 1 0.01
64 46 0.46
65 50 0.50
67 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (63 bp):
AGTGCATCGATGCACTAGAGTGCATCGATGCATGAAATGCATTCGATGTTTCAAAAAACCATG
Found at i:8044127 original size:65 final size:65
Alignment explanation
Indices: 8043929--8044136 Score: 221
Period size: 65 Copynumber: 3.2 Consensus size: 65
8043919 TGCACTAAGA
* * * *
8043929 GTGCATCGATTCATGAAATGCATTCGATGTTTCAAAATAACCA-GAGTGCATCGATGCATGGCTG
1 GTGCATCGATGCATGAAATGCATTCGATGTTTCAATATAATCATGAGTGCATCGATGCATGGTTG
* * *
8043993 GTGCATCGATGCATCAAATGCATTCGATGTTTTC-ATA-AAACTATGAGTGCATCGATGCATAGT
1 GTGCATCGATGCATGAAATGCATTCGATG-TTTCAATATAATC-ATGAGTGCATCGATGCATGGT
8044056 AT-
64 -TG
* * * *
8044058 GTGCATCGGTGCATGAAATGCATTCGATG-TTCAATTTATTTCATG-GTACATCGATGCATGGAT
1 GTGCATCGATGCATGAAATGCATTCGATGTTTCAATATA-ATCATGAGTGCATCGATGCATGG-T
8044121 TG
64 TG
*
8044123 GTGCATCGGTGCAT
1 GTGCATCGATGCAT
8044137 CACTCTGAAA
Statistics
Matches: 122, Mismatches: 13, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
63 6 0.05
64 47 0.39
65 67 0.55
66 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (65 bp):
GTGCATCGATGCATGAAATGCATTCGATGTTTCAATATAATCATGAGTGCATCGATGCATGGTTG
Found at i:8044647 original size:16 final size:16
Alignment explanation
Indices: 8044628--8044674 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
8044618 GAAAATATTC
*
8044628 AATAAAACTA-ATATAA
1 AATAAAACTAGA-AAAA
*
8044644 AATAAAAATAGAAAAA
1 AATAAAACTAGAAAAA
8044660 AATAAAACTAGAAAA
1 AATAAAACTAGAAAA
8044675 CAGTTTTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 26 0.96
17 1 0.04
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.17
Consensus pattern (16 bp):
AATAAAACTAGAAAAA
Found at i:8049689 original size:23 final size:23
Alignment explanation
Indices: 8049645--8049693 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
8049635 ATAAAGAACC
*
8049645 AAAATAAACTTAAATATACCATT
1 AAAATAAACTTAAACATACCATT
*
8049668 AAAATAAAGTTAAAACAT-CCATT
1 AAAATAAACTT-AAACATACCATT
8049691 AAA
1 AAA
8049694 CCAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.59, C:0.12, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATAAACTTAAACATACCATT
Found at i:8050843 original size:8 final size:8
Alignment explanation
Indices: 8050830--8050867 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
8050820 TTAGTACACA
8050830 TTTTTTCT
1 TTTTTTCT
8050838 TTTTTTCT
1 TTTTTTCT
8050846 TTTCTTT-T
1 TTT-TTTCT
8050854 TTTTTTCT
1 TTTTTTCT
8050862 TTTTTT
1 TTTTTT
8050868 TTCACTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
7 3 0.11
8 22 0.79
9 3 0.11
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (8 bp):
TTTTTTCT
Found at i:8050850 original size:13 final size:12
Alignment explanation
Indices: 8050830--8050869 Score: 64
Period size: 12 Copynumber: 3.3 Consensus size: 12
8050820 TTAGTACACA
8050830 TTTTTTCTTTTT
1 TTTTTTCTTTTT
8050842 TTCTTTTC-TTTT
1 TT-TTTTCTTTTT
8050854 TTTTTTCTTTTT
1 TTTTTTCTTTTT
8050866 TTTT
1 TTTT
8050870 CACTTTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 5 0.19
12 16 0.62
13 5 0.19
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:8050859 original size:11 final size:11
Alignment explanation
Indices: 8050830--8050869 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
8050820 TTAGTACACA
8050830 TTTTTTCTTTTT
1 TTTTTTC-TTTT
8050842 TTCTTTTCTTTT
1 TT-TTTTCTTTT
8050854 TTTTTTCTTTT
1 TTTTTTCTTTT
8050865 TTTTT
1 TTTTT
8050870 CACTTTTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 14 0.52
12 8 0.30
13 5 0.19
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTCTTTT
Found at i:8055341 original size:23 final size:23
Alignment explanation
Indices: 8055297--8055345 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
8055287 ATAAAGAACC
*
8055297 AAAATAAACTTAAATATACCATT
1 AAAATAAACTTAAACATACCATT
*
8055320 AAAATAAAGTTAAAACAT-CCATT
1 AAAATAAACTT-AAACATACCATT
8055343 AAA
1 AAA
8055346 CTAACCACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.59, C:0.12, G:0.02, T:0.27
Consensus pattern (23 bp):
AAAATAAACTTAAACATACCATT
Found at i:8063343 original size:50 final size:50
Alignment explanation
Indices: 8063284--8063382 Score: 198
Period size: 50 Copynumber: 2.0 Consensus size: 50
8063274 GAACCACCTC
8063284 AACCTTACTGAATTCCCTGATACCTTATCATAGAAATAGAGAACATTAAT
1 AACCTTACTGAATTCCCTGATACCTTATCATAGAAATAGAGAACATTAAT
8063334 AACCTTACTGAATTCCCTGATACCTTATCATAGAAATAGAGAACATTAA
1 AACCTTACTGAATTCCCTGATACCTTATCATAGAAATAGAGAACATTAA
8063383 CATTGGCCAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (50 bp):
AACCTTACTGAATTCCCTGATACCTTATCATAGAAATAGAGAACATTAAT
Found at i:8069365 original size:18 final size:18
Alignment explanation
Indices: 8069344--8069393 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 18
8069334 AGCTCAAACT
8069344 AGTATCGATACTAAGGCC
1 AGTATCGATACTAAGGCC
* *
8069362 AGTATTGATACCCTAAGGCT
1 AGTATCGATA--CTAAGGCC
*
8069382 GGTATCGATACT
1 AGTATCGATACT
8069394 GATCAGGGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 11 0.42
20 15 0.58
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (18 bp):
AGTATCGATACTAAGGCC
Found at i:8083370 original size:17 final size:17
Alignment explanation
Indices: 8083348--8083398 Score: 84
Period size: 17 Copynumber: 2.9 Consensus size: 17
8083338 AACGGTCAAC
8083348 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
8083365 GGTCAACGGTCGGGTCG
1 GGTCAACGGTCGGGTCG
*
8083382 GGTCAGTCGGTCGGGTC
1 GGTCA-ACGGTCGGGTC
8083399 AGACCGGTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 22 0.69
18 10 0.31
ACGTcount: A:0.10, C:0.24, G:0.47, T:0.20
Consensus pattern (17 bp):
GGTCAACGGTCGGGTCG
Found at i:8083440 original size:19 final size:19
Alignment explanation
Indices: 8083395--8083444 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
8083385 CAGTCGGTCG
8083395 GGTCAG-ACCGGTCAAACC
1 GGTCAGAACCGGTCAAACC
*
8083413 GATTC-GAACCGGTCAAACC
1 G-GTCAGAACCGGTCAAACC
8083432 GGTCAGAACCGGT
1 GGTCAGAACCGGT
8083445 TGAAAACCGG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 4 0.15
19 23 0.85
ACGTcount: A:0.28, C:0.30, G:0.28, T:0.14
Consensus pattern (19 bp):
GGTCAGAACCGGTCAAACC
Found at i:8083463 original size:20 final size:21
Alignment explanation
Indices: 8083427--8083465 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8083417 CGAACCGGTC
8083427 AAACCGGTCAGAACCGGTTGA
1 AAACCGGTCAGAACCGGTTGA
*
8083448 AAACCGGTTA-AACCGGTT
1 AAACCGGTCAGAACCGGTT
8083466 TCCAGCAGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.18
Consensus pattern (21 bp):
AAACCGGTCAGAACCGGTTGA
Done.