Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007999.1 Hibiscus syriacus cultivar Beakdansim tig00110450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11700749
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 33 of 50
Found at i:8090624 original size:17 final size:17
Alignment explanation
Indices: 8090616--8090664 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
8090606 TCAACGGTCG
8090616 GGTCGGGTCGGGTCAAC
1 GGTCGGGTCGGGTCAAC
* **
8090633 GGCCGGGTCGGGTCGGTC
1 GGTCGGGTCGGGTC-AAC
8090651 GGTC-GGTCGGGTCA
1 GGTCGGGTCGGGTCA
8090665 GACCGGTCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 22 0.85
18 4 0.15
ACGTcount: A:0.06, C:0.24, G:0.51, T:0.18
Consensus pattern (17 bp):
GGTCGGGTCGGGTCAAC
Found at i:8090663 original size:22 final size:22
Alignment explanation
Indices: 8090604--8090648 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
8090594 GAAAGTCAAC
8090604 GGTCAACGGTCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
*
8090626 GGTCAACGGCCGGGTCGGGTCG
1 GGTCAACGGTCGGGTCGGGTCG
8090648 G
1 G
8090649 TCGGTCGGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.09, C:0.24, G:0.51, T:0.16
Consensus pattern (22 bp):
GGTCAACGGTCGGGTCGGGTCG
Found at i:8090690 original size:19 final size:19
Alignment explanation
Indices: 8090660--8090718 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
8090650 CGGTCGGTCG
8090660 GGTCAG-ACCGGTCAAACC
1 GGTCAGAACCGGTCAAACC
*
8090678 AGTTC-GAACCGGTCAAACC
1 -GGTCAGAACCGGTCAAACC
*
8090697 GGTCAGAACCGGTTAAACC
1 GGTCAGAACCGGTCAAACC
8090716 GGT
1 GGT
8090719 TTCCAGCAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.11
19 31 0.89
ACGTcount: A:0.29, C:0.29, G:0.27, T:0.15
Consensus pattern (19 bp):
GGTCAGAACCGGTCAAACC
Found at i:8090719 original size:9 final size:9
Alignment explanation
Indices: 8090660--8090718 Score: 64
Period size: 9 Copynumber: 6.3 Consensus size: 9
8090650 CGGTCGGTCG
*
8090660 GGTCAGACC
1 GGTCAAACC
8090669 GGTCAAACC
1 GGTCAAACC
* *
8090678 AGTTCGAACC
1 -GGTCAAACC
8090688 GGTCAAACC
1 GGTCAAACC
8090697 GGTCAGAACC
1 GGTCA-AACC
*
8090707 GGTTAAACC
1 GGTCAAACC
8090716 GGT
1 GGT
8090719 TTCCAGCAGC
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
9 27 0.64
10 15 0.36
ACGTcount: A:0.29, C:0.29, G:0.27, T:0.15
Consensus pattern (9 bp):
GGTCAAACC
Found at i:8097277 original size:74 final size:74
Alignment explanation
Indices: 8097151--8097299 Score: 271
Period size: 74 Copynumber: 2.0 Consensus size: 74
8097141 AAGCCACGCA
8097151 AGTACGTTCACCAGGCAAGAAACTTATTGCAGACCACGCAGCATCAAGTAATAACAAATATATAA
1 AGTACGTTCACCAGGCAAGAAACTTATTGCAGACCACGCAGCATCAAGTAATAACAAATATATAA
8097216 TTACTACTG
66 TTACTACTG
* * *
8097225 AGTATGTTCACCAGGCAAGAAACTTATTGCCGACCATGCAGCATCAAGTAATAACAAATATATAA
1 AGTACGTTCACCAGGCAAGAAACTTATTGCAGACCACGCAGCATCAAGTAATAACAAATATATAA
8097290 TTACTACTG
66 TTACTACTG
8097299 A
1 A
8097300 AGTGCTTCTC
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 72 1.00
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.24
Consensus pattern (74 bp):
AGTACGTTCACCAGGCAAGAAACTTATTGCAGACCACGCAGCATCAAGTAATAACAAATATATAA
TTACTACTG
Found at i:8102401 original size:30 final size:31
Alignment explanation
Indices: 8102336--8102446 Score: 143
Period size: 31 Copynumber: 3.6 Consensus size: 31
8102326 CCAGATACTA
* * *
8102336 GTCAGCTTTGCATTCAGATAATGCATAATAT
1 GTCAGGTTTGCATTCAGATAATGCACAACAT
* ** *
8102367 GTCAGGTTTGCATTCATA-AATGTGCAGCAT
1 GTCAGGTTTGCATTCAGATAATGCACAACAT
*
8102397 GTCAGGTTTGGATTCAGATAATGCACAACAT
1 GTCAGGTTTGCATTCAGATAATGCACAACAT
8102428 GTCAGGTTTGCATTCAGAT
1 GTCAGGTTTGCATTCAGAT
8102447 GATACATTGG
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
30 23 0.35
31 43 0.65
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (31 bp):
GTCAGGTTTGCATTCAGATAATGCACAACAT
Found at i:8103146 original size:62 final size:62
Alignment explanation
Indices: 8103075--8103201 Score: 236
Period size: 62 Copynumber: 2.0 Consensus size: 62
8103065 ACTAACCATG
* *
8103075 CATGAATAATTTATGCTATCATAACCATGCAACTCATATACTTTTCATCCAGCAAGTACATA
1 CATGAATAATTTATACTATCATAACCATGCAACTCATATACTTGTCATCCAGCAAGTACATA
8103137 CATGAATAATTTATACTATCATAACCATGCAACTCATATACTTGTCATCCAGCAAGTACATA
1 CATGAATAATTTATACTATCATAACCATGCAACTCATATACTTGTCATCCAGCAAGTACATA
8103199 CAT
1 CAT
8103202 ACATACATGT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (62 bp):
CATGAATAATTTATACTATCATAACCATGCAACTCATATACTTGTCATCCAGCAAGTACATA
Found at i:8107162 original size:13 final size:14
Alignment explanation
Indices: 8107132--8107168 Score: 58
Period size: 13 Copynumber: 2.6 Consensus size: 14
8107122 AAGTAGGGAC
8107132 TAAAATATAAATAAA
1 TAAAAT-TAAATAAA
8107147 TAAAATTAAA-AAA
1 TAAAATTAAATAAA
8107160 TAAAATTAA
1 TAAAATTAA
8107169 GACGCATAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 12 0.55
14 4 0.18
15 6 0.27
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAAATTAAATAAA
Found at i:8107373 original size:28 final size:30
Alignment explanation
Indices: 8107327--8107395 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
8107317 CCCTCTTTGG
*
8107327 CTTCTCTCTCTTAAGAGAGAGAAGCTTTCA
1 CTTCTCTCTCTTAAGAGAGAGAAGCTCTCA
8107357 CTTCTCTCTCTTAAGAGAGAGAAGCTCTCA
1 CTTCTCTCTCTTAAGAGAGAGAAGCTCTCA
8107387 CTTCTCTCT
1 CTTCTCTCT
8107396 AAAACTCTCC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.35
Consensus pattern (30 bp):
CTTCTCTCTCTTAAGAGAGAGAAGCTCTCA
Found at i:8108561 original size:36 final size:36
Alignment explanation
Indices: 8108510--8109166 Score: 978
Period size: 36 Copynumber: 18.0 Consensus size: 36
8108500 AGGTTGGAAT
8108510 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
*
8108546 ACTTCACTACCCTTCCGTGAAGGTTGAAAAT-ACTTGAAAAG
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGA-TT-----G
* *
8108587 AATTTGTTTCACTACTCTT-CTTGAAGGTTG-AAATGATTG
1 -A----CTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
* *
8108626 ACTTCACTACTCTTCCATGAAGGTTAAAAATGATTG
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
* *
8108662 ACTTCACTACTCTTCCATGAATGTTGAAAATGATTG
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
*
8108698 ACTTCACTACTCTTCCGTGATGGTTGAAAATGATTG
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
* *
8108734 ACTTCATTACTCTTTCGTGAAGGTTGAAAATGATTG
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
* *
8108770 ACTTCACTACTCTTCCATGAAGGTTGAAAATGATTT
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
* *
8108806 ACTTCACTACTCTTTCGTGAAGGTTGAAAATGATTT
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
* *
8108842 ACTTCACTACTCTTCTGTGAAGGTTGAAAATGATTT
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
8108878 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
8108914 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
*
8108950 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTT
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
* *
8108986 ACTTCACTACTCTTCTGTGAAGGTTGAAATTGATTG
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
8109022 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
** *
8109058 ACTTCACTACTCTTCTATGAATGTTGAAAATGATTG
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
8109094 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
* *
8109130 ACTTCACTACTCTTCCGTGAAGCTTGAAAATGCTTG
1 ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
8109166 A
1 A
8109167 AAAGAATCTG
Statistics
Matches: 568, Mismatches: 39, Indels: 28
0.89 0.06 0.04
Matches are distributed among these distances:
34 12 0.02
35 10 0.02
36 514 0.90
38 1 0.00
39 1 0.00
41 1 0.00
42 1 0.00
44 6 0.01
45 11 0.02
46 11 0.02
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (36 bp):
ACTTCACTACTCTTCCGTGAAGGTTGAAAATGATTG
Found at i:8113349 original size:19 final size:20
Alignment explanation
Indices: 8113246--8113388 Score: 171
Period size: 20 Copynumber: 7.2 Consensus size: 20
8113236 AGACTGACAG
* *
8113246 ATGACCCAAAGGATTTACAA
1 ATGACCCGAAGGTTTTACAA
* *
8113266 ATTACCCGGAGGTTTTACAA
1 ATGACCCGAAGGTTTTACAA
* *
8113286 ATGATCCAAAGGTTTTACAA
1 ATGACCCGAAGGTTTTACAA
8113306 ATGACCCGAAGGTTTTACAA
1 ATGACCCGAAGGTTTTACAA
* * *
8113326 ATGACTCGGAGGCTTTAC-A
1 ATGACCCGAAGGTTTTACAA
8113345 ATGACCCGAAGGTTTTACAA
1 ATGACCCGAAGGTTTTACAA
** *
8113365 ATGACTAGAAGATTTTACAA
1 ATGACCCGAAGGTTTTACAA
8113385 ATGA
1 ATGA
8113389 GTGGGAAATG
Statistics
Matches: 103, Mismatches: 19, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
19 16 0.16
20 87 0.84
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.27
Consensus pattern (20 bp):
ATGACCCGAAGGTTTTACAA
Found at i:8120691 original size:13 final size:13
Alignment explanation
Indices: 8120662--8120699 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
8120652 AGTAGGGATT
8120662 AAAATATAAATAAAC
1 AAAAT-TAAA-AAAC
8120677 AAAATTAAAAAAC
1 AAAATTAAAAAAC
8120690 AAAATTAAAA
1 AAAATTAAAA
8120700 CACATAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 14 0.61
14 4 0.17
15 5 0.22
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.18
Consensus pattern (13 bp):
AAAATTAAAAAAC
Found at i:8121817 original size:2 final size:2
Alignment explanation
Indices: 8121810--8121860 Score: 77
Period size: 2 Copynumber: 26.0 Consensus size: 2
8121800 TTTATAATTA
* *
8121810 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AA AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8121851 AT AT AT AT AT
1 AT AT AT AT AT
8121861 TAATTTTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
1 1 0.02
2 44 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8122085 original size:18 final size:19
Alignment explanation
Indices: 8122045--8122085 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
8122035 ATTATTTCTT
8122045 TCAT-TAAAAAATTGAAAA
1 TCATATAAAAAATTGAAAA
*
8122063 T-ATATAAAAAA-TGTAAA
1 TCATATAAAAAATTGAAAA
8122080 TCATAT
1 TCATAT
8122086 TTAATAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (19 bp):
TCATATAAAAAATTGAAAA
Found at i:8122601 original size:30 final size:30
Alignment explanation
Indices: 8122567--8122638 Score: 135
Period size: 30 Copynumber: 2.4 Consensus size: 30
8122557 TAACGGCCGA
8122567 TGGTTTGATTGAAGAATTTAAATAGTTGGG
1 TGGTTTGATTGAAGAATTTAAATAGTTGGG
*
8122597 TGGTTTGATTGAAGCATTTAAATAGTTGGG
1 TGGTTTGATTGAAGAATTTAAATAGTTGGG
8122627 TGGTTTGATTGA
1 TGGTTTGATTGA
8122639 TAAAATAGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.26, C:0.01, G:0.31, T:0.42
Consensus pattern (30 bp):
TGGTTTGATTGAAGAATTTAAATAGTTGGG
Found at i:8123037 original size:42 final size:42
Alignment explanation
Indices: 8122985--8123066 Score: 137
Period size: 42 Copynumber: 2.0 Consensus size: 42
8122975 TTTGATAATT
* *
8122985 AAAAAATATTTTTTTATATTTAATAGTTGTAATTGGTTTTAC
1 AAAAAATATTTTTTAATATTTAATAGTTGTAATTGATTTTAC
*
8123027 AAAAAATATTTTTTAATTTTTAATAGTTGTAATTGATTTT
1 AAAAAATATTTTTTAATATTTAATAGTTGTAATTGATTTT
8123067 TCAATATAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.37, C:0.01, G:0.09, T:0.54
Consensus pattern (42 bp):
AAAAAATATTTTTTAATATTTAATAGTTGTAATTGATTTTAC
Found at i:8123311 original size:23 final size:23
Alignment explanation
Indices: 8123280--8123338 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
8123270 TATATTGTTA
*
8123280 ATATTTTATTAAT-ATATACTCAT
1 ATATATTATTAATAATATA-TCAT
*
8123303 ATATATTA-TAATAATATATGAT
1 ATATATTATTAATAATATATCAT
*
8123325 ATTATATTTTTAAT
1 A-TATATTATTAAT
8123339 TGAGTAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 8 0.27
23 18 0.60
24 4 0.13
ACGTcount: A:0.42, C:0.03, G:0.02, T:0.53
Consensus pattern (23 bp):
ATATATTATTAATAATATATCAT
Found at i:8123454 original size:19 final size:19
Alignment explanation
Indices: 8123416--8123461 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
8123406 TAATAACAAG
*
8123416 TAATATTAATTTATATATT
1 TAATATTAATTAATATATT
8123435 TAATATTAATATAATA-ATT
1 TAATATTAAT-TAATATATT
*
8123454 TAGTATTA
1 TAATATTA
8123462 TGTTAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 20 0.83
20 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TAATATTAATTAATATATT
Found at i:8123468 original size:30 final size:27
Alignment explanation
Indices: 8123422--8123483 Score: 72
Period size: 30 Copynumber: 2.2 Consensus size: 27
8123412 CAAGTAATAT
*
8123422 TAATTTATATATTTAATATTAATA-TAA
1 TAATTTATATATTTAATA-AAATACTAA
8123449 TAATTTAGTATTATGTTAATAAAATACTAA
1 TAATTTA-TA-TAT-TTAATAAAATACTAA
8123479 TAATT
1 TAATT
8123484 AAAATTAAGG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 7 0.23
28 2 0.07
29 7 0.23
30 14 0.47
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.48
Consensus pattern (27 bp):
TAATTTATATATTTAATAAAATACTAA
Found at i:8124353 original size:16 final size:17
Alignment explanation
Indices: 8124328--8124361 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
8124318 TGATTTTTTA
*
8124328 TAGCACTTTTTTTCTTT
1 TAGCACTTTTTTTATTT
8124345 TAGCA-TTTTTTTATTT
1 TAGCACTTTTTTTATTT
8124361 T
1 T
8124362 TCTTTTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.68
Consensus pattern (17 bp):
TAGCACTTTTTTTATTT
Found at i:8124362 original size:17 final size:17
Alignment explanation
Indices: 8124321--8124362 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
8124311 TATGACATGA
*
8124321 TTTTTTATAGCACTTTT
1 TTTTTTTTAGCACTTTT
*
8124338 TTTCTTTTAGCA-TTTT
1 TTTTTTTTAGCACTTTT
8124354 TTTATTTTT
1 TTT-TTTTT
8124363 CTTTTTTGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.14, C:0.10, G:0.05, T:0.71
Consensus pattern (17 bp):
TTTTTTTTAGCACTTTT
Found at i:8130502 original size:38 final size:40
Alignment explanation
Indices: 8130453--8130530 Score: 133
Period size: 38 Copynumber: 2.0 Consensus size: 40
8130443 AAGGTTGACT
8130453 TGCATTATAACTATATGT-AAAAAA-ATTCAATCTTGATA
1 TGCATTATAACTATATGTAAAAAAATATTCAATCTTGATA
*
8130491 TGCATTATAACTATATGTAAAAAAATATTCGATCTTGATA
1 TGCATTATAACTATATGTAAAAAAATATTCAATCTTGATA
8130531 AGTTTTGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
38 18 0.49
39 6 0.16
40 13 0.35
ACGTcount: A:0.44, C:0.10, G:0.09, T:0.37
Consensus pattern (40 bp):
TGCATTATAACTATATGTAAAAAAATATTCAATCTTGATA
Found at i:8133166 original size:3 final size:3
Alignment explanation
Indices: 8133142--8133202 Score: 59
Period size: 3 Copynumber: 19.7 Consensus size: 3
8133132 TTAAAATAAT
* * *
8133142 TTA TTA CTA TTA TTA GTC TTA TTA TTTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
* *
8133188 ATA TTT TTA TATA TT
1 TTA TTA TTA T-TA TT
8133203 TGTTTTTTGC
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
3 40 0.87
4 6 0.13
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:8133173 original size:19 final size:19
Alignment explanation
Indices: 8133149--8133186 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8133139 AATTTATTAC
*
8133149 TATTATTAGTCTTATTATT
1 TATTATTAGTATTATTATT
*
8133168 TATTATTATTATTATTATT
1 TATTATTAGTATTATTATT
8133187 AATATTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (19 bp):
TATTATTAGTATTATTATT
Found at i:8133192 original size:25 final size:25
Alignment explanation
Indices: 8133140--8133202 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
8133130 TTTTAAAATA
* * *
8133140 ATTTATTACTATTATTAGTCTTATT
1 ATTTATTATTATTATTAGTATTAAT
*
8133165 ATTTATTATTATTATTATTATTAAT
1 ATTTATTATTATTATTAGTATTAAT
8133190 ATTT-TTATATATT
1 ATTTATTAT-TATT
8133203 TGTTTTTTGC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 4 0.12
25 29 0.88
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (25 bp):
ATTTATTATTATTATTAGTATTAAT
Found at i:8136969 original size:26 final size:26
Alignment explanation
Indices: 8136939--8136988 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
8136929 TACTTTGGTA
*
8136939 GGGTAAAATTT-CGAAAATGCCCTTTT
1 GGGT-AAATTTACGAAAATACCCTTTT
8136965 GGGTAAATTTACGAAAATACCCTT
1 GGGTAAATTTACGAAAATACCCTT
8136989 ATGTTGTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (26 bp):
GGGTAAATTTACGAAAATACCCTTTT
Found at i:8138111 original size:23 final size:23
Alignment explanation
Indices: 8138085--8138153 Score: 75
Period size: 23 Copynumber: 3.0 Consensus size: 23
8138075 CACCACAGCT
* *
8138085 CGTATAAATGCACTAAAGTGCCA
1 CGTAGAAATGCACTGAAGTGCCA
* * * * *
8138108 CGTAGAATTACACCGTAGTGCCG
1 CGTAGAAATGCACTGAAGTGCCA
8138131 CGTAGAAATGCACTGAAGTGCCA
1 CGTAGAAATGCACTGAAGTGCCA
8138154 TATAAGGTTG
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACTGAAGTGCCA
Found at i:8138549 original size:2 final size:2
Alignment explanation
Indices: 8138542--8138576 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8138532 TATCTTATCC
8138542 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8138577 TCACATGTTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8139795 original size:24 final size:20
Alignment explanation
Indices: 8139738--8139815 Score: 70
Period size: 20 Copynumber: 3.8 Consensus size: 20
8139728 TTTCCCTTGA
*
8139738 AGTGCATCGATGCATTCTAC
1 AGTGCATCGATGCATCCTAC
*
8139758 AGTGTATCGATGCATCCCTTAAC
1 AGTGCATCGATGCAT-CC-T-AC
*
8139781 ATGTGCATCGATGCACTCCT-T
1 A-GTGCATCGATGCA-TCCTAC
8139802 A-TGCATCGATGCAT
1 AGTGCATCGATGCAT
8139816 TAATTGCATT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
18 1 0.02
19 12 0.24
20 14 0.29
21 2 0.04
22 1 0.02
23 4 0.08
24 14 0.29
25 1 0.02
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (20 bp):
AGTGCATCGATGCATCCTAC
Found at i:8143510 original size:59 final size:60
Alignment explanation
Indices: 8143420--8143543 Score: 146
Period size: 59 Copynumber: 2.1 Consensus size: 60
8143410 TTAACGTATA
* * * * *
8143420 AAAATGGTACTTTAATTATAGTAAATTAGTTTATTGAATTTTTTGATTATTTAAATTTAT
1 AAAATGGTACTTTAATTATAGTAAATTAGTTTATTGAATGTATTAATTATTAAAAATTAT
* *
8143480 AAAATGGTTC-TTAATTATAAG-ATAA-TAGTTTATTGAGTGTATTAATTATTAAAAATTAT
1 AAAATGGTACTTTAATTAT-AGTA-AATTAGTTTATTGAATGTATTAATTATTAAAAATTAT
8143539 AAAAT
1 AAAAT
8143544 AATCACTCAA
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
59 42 0.76
60 13 0.24
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.47
Consensus pattern (60 bp):
AAAATGGTACTTTAATTATAGTAAATTAGTTTATTGAATGTATTAATTATTAAAAATTAT
Found at i:8144858 original size:25 final size:24
Alignment explanation
Indices: 8144830--8144892 Score: 99
Period size: 25 Copynumber: 2.5 Consensus size: 24
8144820 CCCAACTCAA
8144830 AATAATAAAAATATTATTTTTATTC
1 AATAA-AAAAATATTATTTTTATTC
8144855 AATAAAAAAAATATTATTTTTATTC
1 AAT-AAAAAAATATTATTTTTATTC
8144880 AATAAAAATAATA
1 AATAAAAA-AATA
8144893 ATTTAATTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
24 5 0.14
25 29 0.81
26 2 0.06
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (24 bp):
AATAAAAAAATATTATTTTTATTC
Found at i:8144911 original size:2 final size:2
Alignment explanation
Indices: 8144904--8144937 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8144894 TTTAATTGAA
8144904 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8144938 TGTAATTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8145991 original size:2 final size:2
Alignment explanation
Indices: 8145984--8146049 Score: 132
Period size: 2 Copynumber: 33.0 Consensus size: 2
8145974 GTTTTCAACA
8145984 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8146026 AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
8146050 TAAGAGCACA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 64 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8153369 original size:20 final size:21
Alignment explanation
Indices: 8153344--8153389 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8153334 GTTGTGGCCG
* *
8153344 TTTCTATCCG-TTGGGGATGA
1 TTTCTAGCCGTTTAGGGATGA
*
8153364 TTTCTAGCCGTTTAGGGATGT
1 TTTCTAGCCGTTTAGGGATGA
8153385 TTTCT
1 TTTCT
8153390 CTACAAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.13, C:0.15, G:0.26, T:0.46
Consensus pattern (21 bp):
TTTCTAGCCGTTTAGGGATGA
Found at i:8154142 original size:32 final size:32
Alignment explanation
Indices: 8154106--8154166 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
8154096 GAGCGATCAA
*
8154106 TTTTTGAGTCATATCAATATCATATCAGTTGG
1 TTTTTGAGTCAGATCAATATCATATCAGTTGG
* * *
8154138 TTTTTGGGTTAGGTCAATATCATATCAGT
1 TTTTTGAGTCAGATCAATATCATATCAGT
8154167 GATCATTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.26, C:0.11, G:0.18, T:0.44
Consensus pattern (32 bp):
TTTTTGAGTCAGATCAATATCATATCAGTTGG
Found at i:8155674 original size:28 final size:27
Alignment explanation
Indices: 8155635--8155693 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 27
8155625 TGTCCTGTAG
*
8155635 GAACACTATGTCTCGAAGGACCACATA
1 GAACACTATGTCCCGAAGGACCACATA
*
8155662 GAACACATATGTCCCGAAGGACCACGTA
1 GAACAC-TATGTCCCGAAGGACCACATA
8155690 GAAC
1 GAAC
8155694 CCTCGACTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 6 0.21
28 23 0.79
ACGTcount: A:0.37, C:0.27, G:0.20, T:0.15
Consensus pattern (27 bp):
GAACACTATGTCCCGAAGGACCACATA
Found at i:8159920 original size:35 final size:35
Alignment explanation
Indices: 8159879--8159945 Score: 125
Period size: 35 Copynumber: 1.9 Consensus size: 35
8159869 TCATGTTCAA
8159879 AATTCCAAAACACTTCAATTATATTCTAAACCTCG
1 AATTCCAAAACACTTCAATTATATTCTAAACCTCG
*
8159914 AATTCCAAAATACTTCAATTATATTCTAAACC
1 AATTCCAAAACACTTCAATTATATTCTAAACC
8159946 CTAAGTTGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.42, C:0.24, G:0.01, T:0.33
Consensus pattern (35 bp):
AATTCCAAAACACTTCAATTATATTCTAAACCTCG
Found at i:8161111 original size:2 final size:2
Alignment explanation
Indices: 8161106--8161134 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8161096 TGTGTAACAA
8161106 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8161135 GACGTTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8175739 original size:29 final size:29
Alignment explanation
Indices: 8175696--8175778 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
8175686 CTCACCTAAC
8175696 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
8175726 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
8175755 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
8175779 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:8180502 original size:29 final size:29
Alignment explanation
Indices: 8180459--8180541 Score: 139
Period size: 29 Copynumber: 2.8 Consensus size: 29
8180449 CTCACCTAAC
8180459 TAAATTGATGTAAGCAATGACATCATTAAT
1 TAAA-TGATGTAAGCAATGACATCATTAAT
*
8180489 TAAATGATGTAAGCAATGACATCTTTAAT
1 TAAATGATGTAAGCAATGACATCATTAAT
*
8180518 TAAATGATGTAAGTAATGACATCA
1 TAAATGATGTAAGCAATGACATCA
8180542 ATTTAGTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
29 46 0.92
30 4 0.08
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (29 bp):
TAAATGATGTAAGCAATGACATCATTAAT
Found at i:8184615 original size:32 final size:31
Alignment explanation
Indices: 8184570--8184646 Score: 86
Period size: 30 Copynumber: 2.5 Consensus size: 31
8184560 TAATTGTTTT
**
8184570 TAATATTGGTTATTAAGGATC-CAATTTTTCCC
1 TAATATTTATTATTAAGGATCTC-ATTTTT-CC
* *
8184602 TAATATTTATTATT-ATGATCTCATTTTTTC
1 TAATATTTATTATTAAGGATCTCATTTTTCC
8184632 TAATATTTATTATTA
1 TAATATTTATTATTA
8184647 GGAGCCTACT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
30 15 0.38
31 11 0.28
32 13 0.33
ACGTcount: A:0.30, C:0.10, G:0.06, T:0.53
Consensus pattern (31 bp):
TAATATTTATTATTAAGGATCTCATTTTTCC
Found at i:8187951 original size:21 final size:22
Alignment explanation
Indices: 8187903--8187951 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
8187893 GATCCCCAAA
8187903 TCAACATT--ATAACTTAAAAT
1 TCAACATTCCATAACTTAAAAT
*
8187923 TCAACATTCCATAA-TTAAATT
1 TCAACATTCCATAACTTAAAAT
*
8187944 TCAGCATT
1 TCAACATT
8187952 GAATACCCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.32
21 13 0.52
22 4 0.16
ACGTcount: A:0.43, C:0.18, G:0.02, T:0.37
Consensus pattern (22 bp):
TCAACATTCCATAACTTAAAAT
Found at i:8189380 original size:6 final size:6
Alignment explanation
Indices: 8189369--8189430 Score: 108
Period size: 6 Copynumber: 10.3 Consensus size: 6
8189359 ATGAAGATTG
8189369 GAAAGT GAAAGT GAAAGT GAAAGT GAAAGT GAAAGT GAAAGT GAAAGT
1 GAAAGT GAAAGT GAAAGT GAAAGT GAAAGT GAAAGT GAAAGT GAAAGT
8189417 GAAA-T GAAGAGT GA
1 GAAAGT GAA-AGT GA
8189431 TTTAGAAAGT
Statistics
Matches: 54, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
5 4 0.07
6 47 0.87
7 3 0.06
ACGTcount: A:0.50, C:0.00, G:0.34, T:0.16
Consensus pattern (6 bp):
GAAAGT
Found at i:8190713 original size:12 final size:12
Alignment explanation
Indices: 8190692--8190734 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
8190682 ACCATTTGTA
8190692 ACTCTTGTAATC
1 ACTCTTGTAATC
*
8190704 ACTATTGT-A--
1 ACTCTTGTAATC
8190713 ACTCTTGTAATC
1 ACTCTTGTAATC
8190725 ACTCTTGTAA
1 ACTCTTGTAA
8190735 CTGACATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
9 7 0.27
10 1 0.04
11 1 0.04
12 17 0.65
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.42
Consensus pattern (12 bp):
ACTCTTGTAATC
Found at i:8190713 original size:21 final size:21
Alignment explanation
Indices: 8190687--8190736 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
8190677 TTCCAACCAT
8190687 TTGTAACTCTTGTAATCACTA
1 TTGTAACTCTTGTAATCACTA
*
8190708 TTGTAACTCTTGTAATCACTC
1 TTGTAACTCTTGTAATCACTA
8190729 TTGTAACT
1 TTGTAACT
8190737 GACATAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.20, G:0.10, T:0.44
Consensus pattern (21 bp):
TTGTAACTCTTGTAATCACTA
Found at i:8195717 original size:12 final size:12
Alignment explanation
Indices: 8195700--8195727 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8195690 AACAGTCAAC
8195700 GGTCAACGGTCG
1 GGTCAACGGTCG
8195712 GGTCAACGGTCG
1 GGTCAACGGTCG
8195724 GGTC
1 GGTC
8195728 GGGTCAGACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.14, C:0.25, G:0.43, T:0.18
Consensus pattern (12 bp):
GGTCAACGGTCG
Found at i:8195718 original size:19 final size:19
Alignment explanation
Indices: 8195694--8195743 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
8195684 GAGGTCAACA
8195694 GTCAACGGTCAACGGTCGG
1 GTCAACGGTCAACGGTCGG
*
8195713 GTCAACGGTC--GGGTCGG
1 GTCAACGGTCAACGGTCGG
8195730 GTCAGACCGGTCAA
1 GTCA-A-CGGTCAA
8195744 ACCAATTCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 10 0.38
18 1 0.04
19 15 0.58
ACGTcount: A:0.20, C:0.26, G:0.38, T:0.16
Consensus pattern (19 bp):
GTCAACGGTCAACGGTCGG
Found at i:8195797 original size:20 final size:20
Alignment explanation
Indices: 8195772--8195829 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
8195762 GAACCGATCG
*
8195772 AAACCGGCCAAACCGGTTCA
1 AAACCGGTCAAACCGGTTCA
*
8195792 AAACCGGTCAAACTGGTTCA
1 AAACCGGTCAAACCGGTTCA
*
8195812 AAACCAGTCAAACCGGTT
1 AAACCGGTCAAACCGGTT
8195830 TTCAAGCTGC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.36, C:0.29, G:0.19, T:0.16
Consensus pattern (20 bp):
AAACCGGTCAAACCGGTTCA
Found at i:8195804 original size:9 final size:9
Alignment explanation
Indices: 8195772--8195828 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
8195762 GAACCGATCG
*
8195772 AAACCGGCC
1 AAACCGGTC
8195781 AAACCGGTTC
1 AAACCGG-TC
8195791 AAAACCGGTC
1 -AAACCGGTC
*
8195801 AAACTGGTTC
1 AAACCGG-TC
*
8195811 AAAACCAGTC
1 -AAACCGGTC
8195821 AAACCGGT
1 AAACCGGT
8195829 TTTCAAGCTG
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
9 20 0.51
10 7 0.18
11 12 0.31
ACGTcount: A:0.37, C:0.30, G:0.19, T:0.14
Consensus pattern (9 bp):
AAACCGGTC
Found at i:8202989 original size:19 final size:18
Alignment explanation
Indices: 8202951--8203008 Score: 62
Period size: 19 Copynumber: 3.1 Consensus size: 18
8202941 TCGGGTCGGG
*
8202951 TCAGACCGGTCAAATCGGT
1 TCAGACCGGTCAACT-GGT
8202970 TCAGACCGGTCAGACTGGT
1 TCAGACCGGTCA-ACTGGT
* *
8202989 TAAAACCGGTCAAACTGGT
1 TCAGACCGGTC-AACTGGT
8203008 T
1 T
8203009 TTCCAGCTGC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 31 0.91
20 3 0.09
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (18 bp):
TCAGACCGGTCAACTGGT
Found at i:8205019 original size:21 final size:21
Alignment explanation
Indices: 8204994--8205043 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
8204984 CACCGAAGTT
* *
8204994 CCACATATTTGTCCCAAAGGA
1 CCACATAATTATCCCAAAGGA
*
8205015 CCACATAATTATCCCGAAGGA
1 CCACATAATTATCCCAAAGGA
8205036 CCACATAA
1 CCACATAA
8205044 ACCCTTGACT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.38, C:0.30, G:0.12, T:0.20
Consensus pattern (21 bp):
CCACATAATTATCCCAAAGGA
Found at i:8205632 original size:19 final size:22
Alignment explanation
Indices: 8205584--8205635 Score: 65
Period size: 19 Copynumber: 2.5 Consensus size: 22
8205574 TACCCCACCA
*
8205584 GTACCGATACTTCCCTTCAAGG
1 GTACCGATACCTCCCTTCAAGG
*
8205606 GTATCGATACCT-CCTT-AA-G
1 GTACCGATACCTCCCTTCAAGG
8205625 GTACCGATACC
1 GTACCGATACC
8205636 GATTTGGCAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 11 0.41
20 2 0.07
21 4 0.15
22 10 0.37
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (22 bp):
GTACCGATACCTCCCTTCAAGG
Found at i:8206335 original size:3 final size:3
Alignment explanation
Indices: 8206320--8206355 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
8206310 GGTTAAAAAA
*
8206320 TAT TAT TA- AAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8206356 GTTAAGCGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 1 0.03
3 29 0.97
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:8208869 original size:24 final size:24
Alignment explanation
Indices: 8208841--8208889 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
8208831 AACTTTTGTC
8208841 TTAAAAAATGAATTTTCTTAAAAT
1 TTAAAAAATGAATTTTCTTAAAAT
8208865 TTAAAAAATGAATTTTCTTAAAAT
1 TTAAAAAATGAATTTTCTTAAAAT
8208889 T
1 T
8208890 GTTTTTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAAAAAATGAATTTTCTTAAAAT
Found at i:8213539 original size:9 final size:9
Alignment explanation
Indices: 8213525--8213562 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
8213515 CTCATCCATC
8213525 AAAAAAGGA
1 AAAAAAGGA
8213534 AAAAAA-GA
1 AAAAAAGGA
*
8213542 AAAAAAGAA
1 AAAAAAGGA
*
8213551 AAAAAAAGA
1 AAAAAAGGA
8213560 AAA
1 AAA
8213563 GAAATAAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
8 8 0.32
9 17 0.68
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (9 bp):
AAAAAAGGA
Found at i:8213571 original size:9 final size:8
Alignment explanation
Indices: 8213525--8213585 Score: 70
Period size: 8 Copynumber: 7.4 Consensus size: 8
8213515 CTCATCCATC
*
8213525 AAAAAAGG
1 AAAAAAAG
8213533 AAAAAAAG
1 AAAAAAAG
8213541 AAAAAAAG
1 AAAAAAAG
8213549 AAAAAAA-
1 AAAAAAAG
*
8213556 AAGAAAAG
1 AAAAAAAG
8213564 AAATAAAAG
1 AAA-AAAAG
8213573 AAATAAAATG
1 AAA-AAAA-G
8213583 AAA
1 AAA
8213586 TTGAATCAAG
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
7 6 0.13
8 24 0.51
9 13 0.28
10 4 0.09
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.05
Consensus pattern (8 bp):
AAAAAAAG
Found at i:8215150 original size:28 final size:28
Alignment explanation
Indices: 8215110--8215167 Score: 100
Period size: 28 Copynumber: 2.1 Consensus size: 28
8215100 GTAATCCAAG
8215110 TGGGGCATCTTGAAGGCTCACA-TCAGCA
1 TGGGGCATCTTGAAGGCTCACACT-AGCA
8215138 TGGGGCATCTTGAAGGCTCACACTAGCA
1 TGGGGCATCTTGAAGGCTCACACTAGCA
8215166 TG
1 TG
8215168 AAAAGGTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 28 0.97
29 1 0.03
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.22
Consensus pattern (28 bp):
TGGGGCATCTTGAAGGCTCACACTAGCA
Found at i:8215695 original size:20 final size:20
Alignment explanation
Indices: 8215670--8215718 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
8215660 AATGCTTTAC
8215670 GAACCAATGATTATGGTGCT
1 GAACCAATGATTATGGTGCT
*
8215690 GAACCAATGATTATGGTGTT
1 GAACCAATGATTATGGTGCT
8215710 GAACCAATG
1 GAACCAATG
8215719 TTGCGATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (20 bp):
GAACCAATGATTATGGTGCT
Found at i:8216468 original size:20 final size:20
Alignment explanation
Indices: 8216406--8216469 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
8216396 CTGGAGATTG
8216406 TTTTTCCTTGAAACAGAAGA
1 TTTTTCCTTGAAACAGAAGA
* **
8216426 TTTTATCTCATT--CA-AGATTA
1 TTTT-TC-C-TTGAAACAGAAGA
8216446 TTTTTCCTTGAAACAGAAGA
1 TTTTTCCTTGAAACAGAAGA
8216466 TTTT
1 TTTT
8216470 ATTTCATTCA
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
17 2 0.06
18 1 0.03
19 3 0.09
20 20 0.62
21 3 0.09
22 1 0.03
23 2 0.06
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (20 bp):
TTTTTCCTTGAAACAGAAGA
Found at i:8216505 original size:23 final size:23
Alignment explanation
Indices: 8216479--8216547 Score: 60
Period size: 23 Copynumber: 3.3 Consensus size: 23
8216469 TATTTCATTC
8216479 AAGATTGTTTTTCCTTGAAACAA
1 AAGATTGTTTTTCCTTGAAACAA
* * **
8216502 AAGA-T-TTTAT-C-T--CACTC
1 AAGATTGTTTTTCCTTGAAACAA
8216519 AAGATTGTTTTTCCTTGAAACAA
1 AAGATTGTTTTTCCTTGAAACAA
8216542 AAGATT
1 AAGATT
8216548 TTATCTCACT
Statistics
Matches: 32, Mismatches: 8, Indels: 12
0.62 0.15 0.23
Matches are distributed among these distances:
17 6 0.19
18 1 0.03
19 5 0.16
20 2 0.06
21 5 0.16
22 1 0.03
23 12 0.38
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (23 bp):
AAGATTGTTTTTCCTTGAAACAA
Found at i:8216877 original size:40 final size:40
Alignment explanation
Indices: 8216387--8216874 Score: 787
Period size: 40 Copynumber: 12.2 Consensus size: 40
8216377 ATATGGAGGA
**
8216387 TTTATCTCACTGGAGATTGTTTTTCCTTGAAACAGAAGAT
1 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAGAAGAT
* *
8216427 TTTATCTCATTCAAGATTATTTTTCCTTGAAACAGAAGAT
1 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAGAAGAT
* * *
8216467 TTTATTTCATTCAAGATTGTTTTTCCTTGAAACAAAAGAT
1 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAGAAGAT
*
8216507 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAAAAGAT
1 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAGAAGAT
8216547 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAGAAGAT
1 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAGAAGAT
*
8216587 TTTATCTCACTCAAGATTGTTTTTTCTTGAAACAGAAGAT
1 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAGAAGAT
* *
8216627 TTTATCTCACTTAAGATTATTTTTCCTTGAAACAGAAGAT
1 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAGAAGAT
*
8216667 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACATAAGAT
1 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAGAAGAT
* *
8216707 TTTATCTCGCTCAAGATTGTTTTGCCTTGAAACAGAAGAT
1 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAGAAGAT
* *
8216747 TTTATCTCGCTCAAGATTGTTTTTCCCTGAAACAGAAGAT
1 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAGAAGAT
* *
8216787 TTTATCTCGCTCAAGATTGTTTTTCCTTGAAAGAGAAGAT
1 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAGAAGAT
* * *
8216827 TTTATCTCGCTCAAGATTGTTTTTCCTTAAAACAAAAGAT
1 TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAGAAGAT
8216867 TTTATCTC
1 TTTATCTC
8216875 GCTTGATATA
Statistics
Matches: 421, Mismatches: 27, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 421 1.00
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.41
Consensus pattern (40 bp):
TTTATCTCACTCAAGATTGTTTTTCCTTGAAACAGAAGAT
Found at i:8216955 original size:36 final size:36
Alignment explanation
Indices: 8216866--8216971 Score: 131
Period size: 36 Copynumber: 2.9 Consensus size: 36
8216856 AAACAAAAGA
* *
8216866 TTTTATCTCGCTTGATATAGTTTCCCTCGAAATAATTTT
1 TTTTATCTCGCTTGAGATAGTTTCCCTTG-AAT--TTTT
*
8216905 TTTTATCTTGCTTGAGATAGTTTCCCTTGAATTTTT
1 TTTTATCTCGCTTGAGATAGTTTCCCTTGAATTTTT
* * *
8216941 TTTTGTCTCACTTGAGACAGTTTCCCTTGAA
1 TTTTATCTCGCTTGAGATAGTTTCCCTTGAA
8216972 ACAAGTTTTG
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
36 31 0.52
38 3 0.05
39 26 0.43
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (36 bp):
TTTTATCTCGCTTGAGATAGTTTCCCTTGAATTTTT
Found at i:8216981 original size:36 final size:35
Alignment explanation
Indices: 8216941--8217008 Score: 91
Period size: 36 Copynumber: 1.9 Consensus size: 35
8216931 TTGAATTTTT
*
8216941 TTTTGTCTCACTTGAGACAGTTTCCCTTGAAACAA
1 TTTTGTCTCACTTGAGACAGTTTCTCTTGAAACAA
* * *
8216976 GTTTTGTCTCCCTTGAAATAGTTTCTCTTGAAA
1 -TTTTGTCTCACTTGAGACAGTTTCTCTTGAAA
8217009 ATTTTGAGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.41
Consensus pattern (35 bp):
TTTTGTCTCACTTGAGACAGTTTCTCTTGAAACAA
Found at i:8217025 original size:60 final size:60
Alignment explanation
Indices: 8216952--8217068 Score: 184
Period size: 60 Copynumber: 1.9 Consensus size: 60
8216942 TTTGTCTCAC
*
8216952 TTGAGACAGTTTCCCTTGAAAC-AAGTTTTGTCTCCCTTGAAATAGTTTCTCTTGAAAATT
1 TTGAGACAGTTTCCCTTGAAACGAA-TTTTGTCTCCCTTGAAACAGTTTCTCTTGAAAATT
*
8217012 TTGAGAACA-TTTCCCTTGAAACGAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAA
1 TTGAG-ACAGTTTCCCTTGAAACGAATTTTGTCTCCCTTGAAACAGTTTCTCTTGAAA
8217069 CATAGTTTTG
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
60 48 0.91
61 5 0.09
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.38
Consensus pattern (60 bp):
TTGAGACAGTTTCCCTTGAAACGAATTTTGTCTCCCTTGAAACAGTTTCTCTTGAAAATT
Found at i:8217066 original size:36 final size:35
Alignment explanation
Indices: 8217012--8217126 Score: 106
Period size: 36 Copynumber: 3.2 Consensus size: 35
8217002 CTTGAAAATT
*
8217012 TTGAGAACA-TTTCCCTTGAAACGAATTTTGTCTCCC
1 TTGAG-ACAGTTTCTCTTGAAAC-AATTTTGTCTCCC
8217048 TTGAGACAGTTTCTCTTGAAACATAGTTTTGTCTCCC
1 TTGAGACAGTTTCTCTTGAAACA-A-TTTTGTCTCCC
* ** * * * *
8217085 TTAAGATGGTTTTTCTTAAAACCAAATTTGTCTCAC
1 TTGAGACAGTTTCTCTTGAAA-CAATTTTGTCTCCC
8217121 TTGAGA
1 TTGAGA
8217127 TGGTTTTTCT
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
35 4 0.06
36 32 0.48
37 28 0.42
38 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (35 bp):
TTGAGACAGTTTCTCTTGAAACAATTTTGTCTCCC
Found at i:8217204 original size:29 final size:29
Alignment explanation
Indices: 8217146--8217232 Score: 115
Period size: 28 Copynumber: 3.0 Consensus size: 29
8217136 TTAAAAACCC
8217146 TTGAGACAGTTTTCCTTTGAAACAAGTTT
1 TTGAGACAGTTTTCCTTTGAAACAAGTTT
*
8217175 TTGAGACAG-TTT-CTCTTGAAATAAGTTT
1 TTGAGACAGTTTTCCT-TTGAAACAAGTTT
* * *
8217203 TTGAGACAATTTTCCTTCGAAACAAATTT
1 TTGAGACAGTTTTCCTTTGAAACAAGTTT
8217232 T
1 T
8217233 ATCTCACTTG
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
27 2 0.04
28 23 0.46
29 23 0.46
30 2 0.04
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41
Consensus pattern (29 bp):
TTGAGACAGTTTTCCTTTGAAACAAGTTT
Found at i:8217288 original size:60 final size:60
Alignment explanation
Indices: 8217203--8217425 Score: 286
Period size: 60 Copynumber: 3.7 Consensus size: 60
8217193 AAATAAGTTT
* * * *
8217203 TTGAGACAATTTTCCTTCGAAACAAATTTTATCTCACTTGAGATGGTTTTTCTTAAAACCC
1 TTGAGACAGTTTT-ATTTGAAACAAAATTTATCTCACTTGAGATGGTTTTTCTTAAAACCC
* * *
8217264 TTAAGACAGTTTTATTTGAAACAAAATTTATCTCAATTGAGATGGTCTTTCTTAAAACCC
1 TTGAGACAGTTTTATTTGAAACAAAATTTATCTCACTTGAGATGGTTTTTCTTAAAACCC
* * * *
8217324 TTGAGACGGTTTTTTTTGAAACAAAATTTATCTCATTTGAGATAGTTTTTCTTAAAA-CC
1 TTGAGACAGTTTTATTTGAAACAAAATTTATCTCACTTGAGATGGTTTTTCTTAAAACCC
* * * *
8217383 TTGAGACAATTTTCCTTCGAAGCAAAATTTATCTCACTTGAGA
1 TTGAGACAGTTTT-ATTTGAAACAAAATTTATCTCACTTGAGA
8217426 GAGCTTCTCT
Statistics
Matches: 142, Mismatches: 19, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
59 13 0.09
60 118 0.83
61 11 0.08
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (60 bp):
TTGAGACAGTTTTATTTGAAACAAAATTTATCTCACTTGAGATGGTTTTTCTTAAAACCC
Found at i:8217755 original size:20 final size:20
Alignment explanation
Indices: 8217699--8217756 Score: 57
Period size: 19 Copynumber: 3.0 Consensus size: 20
8217689 TCCAGTACAG
*
8217699 AGTTCATAATGAGAAGAACT
1 AGTTCATAATGAGAAGAACA
* * *
8217719 CG-TC-TAACGAGGAAGAAGA
1 AGTTCATAATGA-GAAGAACA
8217738 AGTTCATAATGAGAAGAAC
1 AGTTCATAATGAGAAGAAC
8217757 TTGTTCGACC
Statistics
Matches: 28, Mismatches: 7, Indels: 6
0.68 0.17 0.15
Matches are distributed among these distances:
18 5 0.18
19 9 0.32
20 9 0.32
21 5 0.18
ACGTcount: A:0.45, C:0.12, G:0.24, T:0.19
Consensus pattern (20 bp):
AGTTCATAATGAGAAGAACA
Found at i:8217762 original size:20 final size:20
Alignment explanation
Indices: 8217699--8217762 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
8217689 TCCAGTACAG
8217699 AGTTCATAATGAGAAGAACT
1 AGTTCATAATGAGAAGAACT
* * **
8217719 CG-TC-TAACGAGGAAGAAGA
1 AGTTCATAATGA-GAAGAACT
8217738 AGTTCATAATGAGAAGAACT
1 AGTTCATAATGAGAAGAACT
*
8217758 TGTTC
1 AGTTC
8217763 GACCTCGCAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
18 5 0.16
19 9 0.28
20 13 0.41
21 5 0.16
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.23
Consensus pattern (20 bp):
AGTTCATAATGAGAAGAACT
Found at i:8217957 original size:136 final size:135
Alignment explanation
Indices: 8217778--8218257 Score: 684
Period size: 136 Copynumber: 3.6 Consensus size: 135
8217768 CGCATTAGTG
* * *
8217778 TTTCCAATGGAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGATAAGAAGTTCATAATGAG
1 TTTCTAATGAAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGAG
* *
8217843 AAGAGCTTGTTTGACCTATCACTCGATTCAAGACATTTTGAATCAGTGATACCTCGTTTGAGGGA
66 AAGAGCTTGTTCGACCTATCACTCGATTCAAGACATTTTGAATCAGTGAT-CCTCGCTTGAGGGA
8217908 TTAACA
130 TTAACA
8217914 TTTCTAATGAAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGAG
1 TTTCTAATGAAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGAG
* **
8217979 AAGAGCTTGTTCGACCTATCACTCGATTCATGACATTTCAAATCAGTGATGCCTCGCTTGAGGGA
66 AAGAGCTTGTTCGACCTATCACTCGATTCAAGACATTTTGAATCAGTGAT-CCTCGCTTGAGGGA
8218044 TTAACA
130 TTAACA
* * * *
8218050 TTTATAATGAAGAGTTCATAATGAGAAGAACTCATTCGATAGAGGGAGAAGAAGTTCATAATTAG
1 TTTCTAATGAAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGAG
* * * * *
8218115 AAGAGCTTGTTCGACCTAT-ATATTGATTCACGACATTTTGAATCAATGGCTCCTCGCTTGAGGG
66 AAGAGCTTGTTCGACCTATCA-CTCGATTCAAGACATTTTGAATCAGT-GATCCTCGCTTGAGGG
*
8218179 ATTGACA
129 ATTAACA
* * *
8218186 TTTCTAATTAAGAGTTCATAATGAGAAGAACTCGTCCTA-A-AGGG-G-A-AAGTTCATAATGAG
1 TTTCTAATGAAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGAG
*
8218246 AAGAACTTGTTC
66 AAGAGCTTGTTC
8218258 CTTTCAAGTC
Statistics
Matches: 314, Mismatches: 28, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
131 24 0.08
132 1 0.00
133 1 0.00
134 4 0.01
135 2 0.01
136 280 0.89
137 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.28
Consensus pattern (135 bp):
TTTCTAATGAAGAGTTCATAATGAGAAGAACTCATCCGACAGAGGGAGAAGAAGTTCATAATGAG
AAGAGCTTGTTCGACCTATCACTCGATTCAAGACATTTTGAATCAGTGATCCTCGCTTGAGGGAT
TAACA
Found at i:8218439 original size:117 final size:114
Alignment explanation
Indices: 8218195--8218487 Score: 352
Period size: 117 Copynumber: 2.6 Consensus size: 114
8218185 ATTTCTAATT
* * * *
8218195 AAGAGTTCATAATGAGAAGAACTCGTCCTA-AAG-G-GGA-AAGTTCATAATGAGAAGAACTTGT
1 AAGAGTTCATAATGAAAAGAACTCATCCAACAAGAGAGAAGAAGTTCATAATGAGAAGAACTTGT
8218256 T---CCTTTCAAGTCCATCACAGAAAGAGATGGATAAACATTTTCAGTG
66 TCAACCTTTCAAGTCCATCACAGAAAGAGATGGATAAACATTTTCAGTG
* * **
8218302 GAGAGTTCATAATGATAAGAACTCATCCAATGAG-GAAGAAGAAGTTCATAATGAGAAGAACTTG
1 AAGAGTTCATAATGAAAAGAACTCATCCAACAAGAG-AGAAGAAGTTCATAATGAGAAGAACTTG
* * * *
8218366 TTCAACCGTGGTTCGATTCCATCACAG-AAGAAGGTGGATCAACATTTTCAGTG
65 TTCAACC-T--TTCAAGTCCATCACAGAAAG-AGATGGATAAACATTTTCAGTG
* *
8218419 AAGAGTTCATAATTAAAAGAACTCATCCAACAAGAGAGAAGAAGTTCATAATGAGAATAACTTGT
1 AAGAGTTCATAATGAAAAGAACTCATCCAACAAGAGAGAAGAAGTTCATAATGAGAAGAACTTGT
8218484 TCAA
66 TCAA
8218488 TCCAAAGCTT
Statistics
Matches: 158, Mismatches: 16, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
107 26 0.16
108 3 0.02
110 2 0.01
111 25 0.16
114 2 0.01
115 1 0.01
116 3 0.02
117 95 0.60
118 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.25
Consensus pattern (114 bp):
AAGAGTTCATAATGAAAAGAACTCATCCAACAAGAGAGAAGAAGTTCATAATGAGAAGAACTTGT
TCAACCTTTCAAGTCCATCACAGAAAGAGATGGATAAACATTTTCAGTG
Found at i:8219377 original size:2 final size:2
Alignment explanation
Indices: 8219370--8219428 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
8219360 ATGTAAAAGT
8219370 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8219412 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
8219429 CGAAAATAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8220316 original size:39 final size:39
Alignment explanation
Indices: 8220273--8220355 Score: 125
Period size: 39 Copynumber: 2.2 Consensus size: 39
8220263 GATAGATGGT
* *
8220273 TTATTATTGTTATTGATGAGTGGTGTG-GAGAAAGTGGAG
1 TTATTATTGTTATTGATAAGTAGTG-GAGAGAAAGTGGAG
8220312 TTATTATTGTTATTGATAAGTAGTGGAGAGAAAGTGGAG
1 TTATTATTGTTATTGATAAGTAGTGGAGAGAAAGTGGAG
8220351 -TATTA
1 TTATTA
8220356 ATTTAGTAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
38 6 0.15
39 35 0.85
ACGTcount: A:0.30, C:0.00, G:0.31, T:0.39
Consensus pattern (39 bp):
TTATTATTGTTATTGATAAGTAGTGGAGAGAAAGTGGAG
Found at i:8227049 original size:22 final size:23
Alignment explanation
Indices: 8227024--8227094 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 23
8227014 TCCTAAGGAT
8227024 CACATAGGTTGCACTGAAGTG-C
1 CACATAGGTTGCACTGAAGTGAC
* * *
8227046 CACATA-TTTATCAC-GAA-TGAT
1 CACATAGGTT-GCACTGAAGTGAC
8227067 CACATAGGTTGCACTGAAG-GAC
1 CACATAGGTTGCACTGAAGTGAC
8227089 CACATA
1 CACATA
8227095 AACCCTCGAC
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
20 2 0.05
21 14 0.37
22 22 0.58
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.24
Consensus pattern (23 bp):
CACATAGGTTGCACTGAAGTGAC
Found at i:8227068 original size:43 final size:43
Alignment explanation
Indices: 8226989--8227095 Score: 137
Period size: 43 Copynumber: 2.5 Consensus size: 43
8226979 AACTCGTAAT
* * *
8226989 TTGCACCGAAGTGCCATATAATTATTCCTAAGGATCACATAGG
1 TTGCACTGAAGTGCCACATAATTATTCCGAAGGATCACATAGG
* *
8227032 TTGCACTGAAGTGCCACATATTTA-TCACGAATGATCACATAGG
1 TTGCACTGAAGTGCCACATAATTATTC-CGAAGGATCACATAGG
8227075 TTGCACTGAAG-GACCACATAA
1 TTGCACTGAAGTG-CCACATAA
8227096 ACCCTCGACT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 3 0.05
43 53 0.95
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (43 bp):
TTGCACTGAAGTGCCACATAATTATTCCGAAGGATCACATAGG
Found at i:8227746 original size:17 final size:17
Alignment explanation
Indices: 8227707--8227740 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8227697 GATGATGTTG
*
8227707 AAAGAAGAAGAAAAATAT
1 AAAG-AGAAGAAAAACAT
8227725 AAAGAGAAGAAAAACA
1 AAAGAGAAGAAAAACA
8227741 AGAAGAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.74, C:0.03, G:0.18, T:0.06
Consensus pattern (17 bp):
AAAGAGAAGAAAAACAT
Found at i:8229699 original size:20 final size:20
Alignment explanation
Indices: 8229674--8229712 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8229664 GTATCTATAC
*
8229674 CCTGGGTACCGATACCCCTG
1 CCTGGGTACCAATACCCCTG
*
8229694 CCTGGGTATCAATACCCCT
1 CCTGGGTACCAATACCCCT
8229713 ATGACTGCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.38, G:0.21, T:0.23
Consensus pattern (20 bp):
CCTGGGTACCAATACCCCTG
Found at i:8230230 original size:31 final size:32
Alignment explanation
Indices: 8230165--8230232 Score: 93
Period size: 31 Copynumber: 2.1 Consensus size: 32
8230155 CATTGTAAAT
*
8230165 GGGAAAGGTTCTAGTTGATCCCGTGAAAAGCTA
1 GGGAAAGGTTC-AGTTGATCCCGTGAAAAACTA
* *
8230198 GGGAAAGGTTC-GTTTATCCTGTGAAAAACTA
1 GGGAAAGGTTCAGTTGATCCCGTGAAAAACTA
8230229 GGGA
1 GGGA
8230233 GTTGTAAAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 21 0.66
33 11 0.34
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (32 bp):
GGGAAAGGTTCAGTTGATCCCGTGAAAAACTA
Found at i:8236383 original size:29 final size:29
Alignment explanation
Indices: 8236305--8236392 Score: 79
Period size: 29 Copynumber: 3.0 Consensus size: 29
8236295 GCTAAATTAT
* * *
8236305 AACTTTTAAAAATTACATTTCTATCC-CTA
1 AACTTTCAAAAATTACACTTC-AGCCACTA
** *
8236334 AACTTTTCAAAGTTTATACTTCAGCCACTA
1 AAC-TTTCAAAAATTACACTTCAGCCACTA
* *
8236364 AACTTTCAAAACTTACACTTCAGTCACTA
1 AACTTTCAAAAATTACACTTCAGCCACTA
8236393 GACAAAATTT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
29 28 0.60
30 19 0.40
ACGTcount: A:0.36, C:0.24, G:0.03, T:0.36
Consensus pattern (29 bp):
AACTTTCAAAAATTACACTTCAGCCACTA
Found at i:8239267 original size:6 final size:6
Alignment explanation
Indices: 8239256--8239287 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
8239246 AGACACGTAT
8239256 GACCAC GACCAC GACCAC GACCAC GACCAC GA
1 GACCAC GACCAC GACCAC GACCAC GACCAC GA
8239288 GCCGAGCCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.47, G:0.19, T:0.00
Consensus pattern (6 bp):
GACCAC
Found at i:8248452 original size:55 final size:54
Alignment explanation
Indices: 8248382--8248718 Score: 303
Period size: 55 Copynumber: 6.1 Consensus size: 54
8248372 GGATAAATGA
* * * *
8248382 AACTTGAAAAATCTTCAAATGACGGGTCCACTCCTTATTCCTTCAAGGAGTATA-
1 AACTCGAACAATCTTCAAA-AACGGGTCCGCTCCTTATTCCTTCAAGGAGTATAG
* * ** * * *
8248436 AGACTCGAACAATCTTCATAAAATGTGTTTGCTCCCTATTCGTTCAGGGAGTATA-
1 A-ACTCGAACAATCTTCA-AAAACGGGTCCGCTCCTTATTCCTTCAAGGAGTATAG
* * * * *
8248491 AGACTCAAACAATCTTCAATAAACGGGTTCGCTCCCTATTCGTTCAGGGAGTATAG
1 A-ACTCGAACAATCTTCAA-AAACGGGTCCGCTCCTTATTCCTTCAAGGAGTATAG
*
8248547 AACTCGAACAATCTTCATAAAACGGGTCTGCT-CTCTATTCCTTC-AGAGAGTATAG
1 AACTCGAACAATCTTCA-AAAACGGGTCCGCTCCT-TATTCCTTCAAG-GAGTATAG
* *
8248602 AACTCGAACAATCTTCAACAAATGGGTCCGCT-CTCTATTCCTT-TAGAGAGTATAG
1 AACTCGAACAATCTTCAA-AAACGGGTCCGCTCCT-TATTCCTTCAAG-GAGTATAG
* *
8248657 AACTCGAACAATCTTCATAAAACGGGTTCGCTCCCTATT-CTATC-AGAGAGTATAG
1 AACTCGAACAATCTTCA-AAAACGGGTCCGCTCCTTATTCCT-TCAAG-GAGTATAG
8248712 AACTCGA
1 AACTCGA
8248719 TCTTCATAAA
Statistics
Matches: 244, Mismatches: 26, Indels: 25
0.83 0.09 0.08
Matches are distributed among these distances:
54 7 0.03
55 231 0.95
56 6 0.02
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (54 bp):
AACTCGAACAATCTTCAAAAACGGGTCCGCTCCTTATTCCTTCAAGGAGTATAG
Found at i:8248669 original size:165 final size:165
Alignment explanation
Indices: 8248417--8248718 Score: 427
Period size: 165 Copynumber: 1.8 Consensus size: 165
8248407 GTCCACTCCT
* ** *
8248417 TATTCCTTCAAGGAGTATAAGACTCGAACAATCTTCATAAAATGTGTTTGCTCCCTATTCGTTCA
1 TATTCCTTCAAGGAGTATAAGACTCGAACAATCTTCATAAAATGGGTCCGCTCCCTATTCCTTCA
* *
8248482 GGGAGTATAAGACTCAAACAATCTTCA-ATAAACGGGTTCGCTCCCTATTCGT-TCAGGGAGTAT
66 GAGAGTATAAGACTCAAACAATCTTCATA-AAACGGGTTCGCTCCCTATTC-TATCAGAGAGTAT
8248545 AGAACTCGAACAATCTTCATAAAACGGGTCTGCTCTC
129 AGAACTCGAACAATCTTCATAAAACGGGTCTGCTCTC
*
8248582 TATTCCTTC-AGAGAGTAT-AGAACTCGAACAATCTTCA-ACAAATGGGTCCGCTCTCTATTCCT
1 TATTCCTTCAAG-GAGTATAAG-ACTCGAACAATCTTCATA-AAATGGGTCCGCTCCCTATTCCT
* *
8248644 TTAGAGAGTAT-AGAACTCGAACAATCTTCATAAAACGGGTTCGCTCCCTATTCTATCAGAGAGT
63 TCAGAGAGTATAAG-ACTCAAACAATCTTCATAAAACGGGTTCGCTCCCTATTCTATCAGAGAGT
8248708 ATAGAACTCGA
127 ATAGAACTCGA
8248719 TCTTCATAAA
Statistics
Matches: 122, Mismatches: 9, Indels: 12
0.85 0.06 0.08
Matches are distributed among these distances:
164 8 0.07
165 113 0.93
166 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (165 bp):
TATTCCTTCAAGGAGTATAAGACTCGAACAATCTTCATAAAATGGGTCCGCTCCCTATTCCTTCA
GAGAGTATAAGACTCAAACAATCTTCATAAAACGGGTTCGCTCCCTATTCTATCAGAGAGTATAG
AACTCGAACAATCTTCATAAAACGGGTCTGCTCTC
Found at i:8248717 original size:110 final size:109
Alignment explanation
Indices: 8248403--8248718 Score: 406
Period size: 110 Copynumber: 2.9 Consensus size: 109
8248393 TCTTCAAATG
* * * * *
8248403 ACGGGTCCACTCCTTATTCCTTCA-AGGAGTATA-AGACTCGAACAATCTTCATAAAATGTGTTT
1 ACGGGTCCGCTCCCTATTCCTTCAGA-GAGTATAGA-ACTCGAACAATCTTCATAAAACGGGTTC
* * *
8248466 GCTCCCTATTCGTTCAGGGAGTATA-AGACTCAAACAATCTTCAATAA
64 GCTCCCTATTC-TTCAGAGAGTATAGA-ACTCGAACAATCTTCAACAA
* * *
8248513 ACGGGTTCGCTCCCTATTCGTTCAGGGAGTATAGAACTCGAACAATCTTCATAAAACGGG-TCTG
1 ACGGGTCCGCTCCCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATAAAACGGGTTC-G
*
8248577 CTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAA
65 CTCCCTATT-CTTCAGAGAGTATAGAACTCGAACAATCTTCAACAA
* * *
8248623 ATGGGTCCGCTCTCTATTCCTTTAGAGAGTATAGAACTCGAACAATCTTCATAAAACGGGTTCGC
1 ACGGGTCCGCTCCCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATAAAACGGGTTCGC
8248688 TCCCTATTCTATCAGAGAGTATAGAACTCGA
66 TCCCTATTCT-TCAGAGAGTATAGAACTCGA
8248719 TCTTCATAAA
Statistics
Matches: 180, Mismatches: 19, Indels: 14
0.85 0.09 0.07
Matches are distributed among these distances:
109 3 0.02
110 172 0.96
111 5 0.03
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.29
Consensus pattern (109 bp):
ACGGGTCCGCTCCCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCATAAAACGGGTTCGC
TCCCTATTCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAA
Found at i:8250031 original size:7 final size:7
Alignment explanation
Indices: 8250015--8250172 Score: 80
Period size: 7 Copynumber: 22.6 Consensus size: 7
8250005 CCCCCTTTTA
8250015 TTTC-TT
1 TTTCTTT
8250021 TTTCTTT
1 TTTCTTT
* *
8250028 TTTCATC
1 TTTCTTT
*
8250035 ATT-TTT
1 TTTCTTT
*
8250041 TCTCTTT
1 TTTCTTT
*
8250048 CTTCTTT
1 TTTCTTT
8250055 TTTCATTT
1 TTTC-TTT
*
8250063 TTTC-AT
1 TTTCTTT
*
8250069 TTTATTT
1 TTTCTTT
8250076 TTTC-TT
1 TTTCTTT
*
8250082 CTT-TTT
1 TTTCTTT
*
8250088 TTTCATT
1 TTTCTTT
*
8250095 TTTCATT
1 TTTCTTT
8250102 TTTCTTT
1 TTTCTTT
8250109 TCTTC-TT
1 T-TTCTTT
8250116 TTTC--T
1 TTTCTTT
8250121 TTTCATTT
1 TTTC-TTT
8250129 TTTCATTTT
1 TTTC--TTT
8250138 TTTCATTTT
1 TTTC--TTT
*
8250147 TTTCATT
1 TTTCTTT
8250154 TTTCATTT
1 TTTC-TTT
*
8250162 TTTCATT
1 TTTCTTT
8250169 TTTC
1 TTTC
8250173 CATTTCTTCT
Statistics
Matches: 118, Mismatches: 22, Indels: 23
0.72 0.13 0.14
Matches are distributed among these distances:
5 5 0.04
6 21 0.18
7 55 0.47
8 21 0.18
9 16 0.14
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTCTTT
Found at i:8250056 original size:33 final size:35
Alignment explanation
Indices: 8250016--8250170 Score: 143
Period size: 33 Copynumber: 4.6 Consensus size: 35
8250006 CCCCTTTTAT
*
8250016 TTCTTTTTC-TTTTTTCATCATT-TTTTC-TCTTTC
1 TTCTTTTTCATTTTTTCAT-TTTATTTTCATCTTTC
*
8250049 TTCTTTTTTCATTTTTTCATTTTATTTT-TTC-TTC
1 TTC-TTTTTCATTTTTTCATTTTATTTTCATCTTTC
* * *
8250083 TTTTTTTTCA-TTTTTCATTTTTCTTTTCTTCTTT-
1 TTCTTTTTCATTTTTTCA-TTTTATTTTCATCTTTC
*
8250117 TTC-TTTTCATTTTTTCA-TTT-TTTTCAT-TTTT
1 TTCTTTTTCATTTTTTCATTTTATTTTCATCTTTC
8250148 TTCATTTTTCATTTTTTCATTTT
1 TTC-TTTTTCATTTTTTCATTTT
8250171 TCCATTTCTT
Statistics
Matches: 105, Mismatches: 5, Indels: 23
0.79 0.04 0.17
Matches are distributed among these distances:
30 3 0.03
31 9 0.09
32 10 0.10
33 38 0.36
34 28 0.27
35 17 0.16
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.76
Consensus pattern (35 bp):
TTCTTTTTCATTTTTTCATTTTATTTTCATCTTTC
Found at i:8250065 original size:8 final size:8
Alignment explanation
Indices: 8250019--8250177 Score: 110
Period size: 8 Copynumber: 20.2 Consensus size: 8
8250009 CTTTTATTTC
*
8250019 TTTTTCTT
1 TTTTTCAT
8250027 TTTTCATCAT
1 TTTT--TCAT
8250037 TTTTTC-T
1 TTTTTCAT
8250044 CTTTCTTC-T
1 -TTT-TTCAT
8250053 TTTTTCAT
1 TTTTTCAT
8250061 TTTTTCAT
1 TTTTTCAT
8250069 TTTATT--T
1 TTT-TTCAT
*
8250076 TTTCTTCTTT
1 TTT-TTC-AT
8250086 TTTTTCA-
1 TTTTTCAT
8250093 TTTTTCA-
1 TTTTTCAT
8250100 TTTTTC-T
1 TTTTTCAT
8250107 TTTCTTC--
1 TTT-TTCAT
8250114 TTTTTC--
1 TTTTTCAT
8250120 -TTTTCAT
1 TTTTTCAT
8250127 TTTTTCATT
1 TTTTTCA-T
8250136 TTTTTCATT
1 TTTTTCA-T
8250145 TTTTTCA-
1 TTTTTCAT
8250152 TTTTTCAT
1 TTTTTCAT
8250160 TTTTTCAT
1 TTTTTCAT
*
8250168 TTTTCCAT
1 TTTTTCAT
8250176 TT
1 TT
8250178 CTTCTTTAAG
Statistics
Matches: 131, Mismatches: 4, Indels: 32
0.78 0.02 0.19
Matches are distributed among these distances:
5 5 0.04
6 3 0.02
7 36 0.27
8 50 0.38
9 26 0.20
10 11 0.08
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTTTCAT
Found at i:8250129 original size:6 final size:7
Alignment explanation
Indices: 8250053--8250177 Score: 86
Period size: 7 Copynumber: 17.4 Consensus size: 7
8250043 TCTTTCTTCT
8250053 TTTTTCA
1 TTTTTCA
8250060 TTTTTTCA
1 -TTTTTCA
8250068 -TTTT-A
1 TTTTTCA
8250073 TTTTTTC-
1 -TTTTTCA
8250080 TTCTTT--
1 TT-TTTCA
8250086 TTTTTCA
1 TTTTTCA
8250093 TTTTTCA
1 TTTTTCA
*
8250100 TTTTTCT
1 TTTTTCA
8250107 TTTCTTC-
1 TTT-TTCA
8250114 TTTTTC-
1 TTTTTCA
8250120 -TTTTCA
1 TTTTTCA
8250126 TTTTTTCA
1 -TTTTTCA
8250134 TTTTTTTCA
1 --TTTTTCA
8250143 TTTTTTTCA
1 --TTTTTCA
8250152 TTTTTCA
1 TTTTTCA
8250159 TTTTTTCA
1 -TTTTTCA
8250167 TTTTTCCA
1 TTTTT-CA
8250175 TTT
1 TTT
8250178 CTTCTTTAAG
Statistics
Matches: 103, Mismatches: 1, Indels: 26
0.79 0.01 0.20
Matches are distributed among these distances:
5 9 0.09
6 11 0.11
7 38 0.37
8 28 0.27
9 17 0.17
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTCA
Found at i:8250171 original size:33 final size:31
Alignment explanation
Indices: 8250033--8250170 Score: 155
Period size: 33 Copynumber: 4.5 Consensus size: 31
8250023 TCTTTTTTCA
8250033 TCATTTTTTCTCTTTCTTC-TTTTTTCATTTTT
1 TCATTTTTTCT-TTTCTTCTTTTTTTCA-TTTT
8250065 TCATTTTATT-TTTTCTTCTTTTTTTTCATTTT
1 TCATTTT-TTCTTTTCTTC-TTTTTTTCATTTT
8250097 TCA-TTTTTCTTTTCTTC--TTTTTC--TTT
1 TCATTTTTTCTTTTCTTCTTTTTTTCATTTT
*
8250123 TCATTTTTTCATTTTTTTCATTTTTTTCATTTT
1 TCATTTTTTC-TTTTCTTC-TTTTTTTCATTTT
8250156 TCATTTTTTCATTTT
1 TCATTTTTTC-TTTT
8250171 TCCATTTCTT
Statistics
Matches: 94, Mismatches: 1, Indels: 21
0.81 0.01 0.18
Matches are distributed among these distances:
26 6 0.06
27 6 0.06
28 13 0.14
30 2 0.02
31 24 0.26
32 15 0.16
33 28 0.30
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (31 bp):
TCATTTTTTCTTTTCTTCTTTTTTTCATTTT
Found at i:8250179 original size:59 final size:58
Alignment explanation
Indices: 8250062--8250180 Score: 152
Period size: 59 Copynumber: 2.0 Consensus size: 58
8250052 TTTTTTCATT
* * **
8250062 TTTTCATTTTATTTTTTCTTCTTTTTTTTCATTTTTCATTTTTCTTTTCTTCTTTTTC
1 TTTTCATTTTATTTTTTCTTCATTTTTTTCATTTTTCATTTTTCATTTCTTCCATTTC
*
8250120 TTTTCATTTT-TTCATTTTTTTCATTTTTTTCATTTTTCATTTTTTCATTT-TTCCATTTC
1 TTTTCATTTTATT--TTTTCTTCATTTTTTTCATTTTTCA-TTTTTCATTTCTTCCATTTC
8250179 TT
1 TT
8250181 CTTTAAGCGA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
57 2 0.04
58 10 0.19
59 32 0.60
60 9 0.17
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (58 bp):
TTTTCATTTTATTTTTTCTTCATTTTTTTCATTTTTCATTTTTCATTTCTTCCATTTC
Found at i:8253606 original size:3 final size:3
Alignment explanation
Indices: 8253598--8253648 Score: 59
Period size: 3 Copynumber: 16.0 Consensus size: 3
8253588 TTTTACTTAA
8253598 ATT ATT ATT ATT ATT ATT ATT ATT -TAT ATTT ATAT ATAT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T A-TT AT-T AT-T ATT ATT ATT
8253646 ATT
1 ATT
8253649 TAATAAATAT
Statistics
Matches: 44, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
2 1 0.02
3 33 0.75
4 9 0.20
5 1 0.02
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:8255506 original size:17 final size:15
Alignment explanation
Indices: 8255476--8255511 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
8255466 AAATTATAGT
8255476 AATAAATTTAAATTA
1 AATAAATTTAAATTA
8255491 AATAGAATTATAAATTA
1 AATA-AATT-TAAATTA
8255508 AATA
1 AATA
8255512 TATCTTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.21
16 4 0.21
17 11 0.58
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (15 bp):
AATAAATTTAAATTA
Found at i:8262489 original size:114 final size:113
Alignment explanation
Indices: 8262286--8262618 Score: 549
Period size: 114 Copynumber: 2.9 Consensus size: 113
8262276 TGCCATGTGC
8262286 TCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
1 TCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
8262351 TTTGGTATGAACCCCAAAACCAATCATTGGATTTGAAAGATGAATTTGT
66 TTTGGTATGAA-CCCAAAACCAATCATTGGATTTGAAAGATGAATTTGT
* * *
8262400 TCTTAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTAAGTTATCTGATCTTG
1 TCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
*
8262465 TTTGGTATGAACCTCAAAACCAATCATTAGATTTGAAAGATGAATTTGT
66 TTTGGTATGAACC-CAAAACCAATCATTGGATTTGAAAGATGAATTTGT
8262514 TCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
1 TCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
** * * * *
8262579 TTCAGTAGGAATCCCATAACCAATCATTGAAATTGAAAGA
66 TTTGGTATGAA-CCCAAAACCAATCATTGGATTTGAAAGA
8262619 AGAACTGCAT
Statistics
Matches: 203, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
113 2 0.01
114 199 0.98
115 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (113 bp):
TCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG
TTTGGTATGAACCCAAAACCAATCATTGGATTTGAAAGATGAATTTGT
Found at i:8264678 original size:54 final size:54
Alignment explanation
Indices: 8264614--8264751 Score: 204
Period size: 54 Copynumber: 2.6 Consensus size: 54
8264604 CATAAAAGAG
* * *
8264614 GATGAATGTGTTGTCAAAAGCTTTACGAACATCTGAGCAGAAGCCACATGAGAT
1 GATGAATGTGTTGTCAAATGCTTTACGAACATCTGAACAGAAACCACATGAGAT
* *
8264668 GATGAATGTGTTGTCAAATGCTTTACGAACATCTGAACTGAAACCATATGAGAT
1 GATGAATGTGTTGTCAAATGCTTTACGAACATCTGAACAGAAACCACATGAGAT
* * *
8264722 GAAGAATGTGTTTTCAAATGTTTTACGAAC
1 GATGAATGTGTTGTCAAATGCTTTACGAAC
8264752 CAGTGATTAT
Statistics
Matches: 76, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 76 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (54 bp):
GATGAATGTGTTGTCAAATGCTTTACGAACATCTGAACAGAAACCACATGAGAT
Found at i:8265169 original size:22 final size:22
Alignment explanation
Indices: 8265139--8265193 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
8265129 AGATTCTCAC
*
8265139 TTCAGAGATGACAAATTTTCTT
1 TTCAAAGATGACAAATTTTCTT
* * *
8265161 TTTAAAGATGATAGATTTTCTT
1 TTCAAAGATGACAAATTTTCTT
8265183 TTCAAAGATGA
1 TTCAAAGATGA
8265194 AAACTTTATG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.42
Consensus pattern (22 bp):
TTCAAAGATGACAAATTTTCTT
Found at i:8265978 original size:167 final size:164
Alignment explanation
Indices: 8265702--8266026 Score: 526
Period size: 167 Copynumber: 2.0 Consensus size: 164
8265692 AGAATGAGCA
* *
8265702 TTATCTTGAGGTTGGGGCATGTTACCCAATCAATATGTTATTTCAGAAACATAATGAGAAAACGA
1 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTT-AGAAACATAATGAGAAAACGA
* * ** *
8265767 TTTTCATAGTTTCTCATTTTATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTTC
65 TTTCCAAAGTTTCTCATTCAATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTCC
8265832 TTAGTTTTTTTTACTTAGTAAACTATTTCCAACAACC
130 TTAG--TTTTTTACTTAGTAAACTATTTCCAACAACC
*
8265869 TTATCTTGAGATTGGGGTATGTTACCCAATCAACATGTTATCTT-GAAACATAATGAGAAAACGA
1 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTAT-TTAGAAACATAATGAGAAAACGA
8265933 TTTCCAAAGTTTCTCATTCAATCTTTTCTAAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTC
65 TTTCCAAAGTTTCTCATTCAATCTTTTCT-AAAATGAAATTGTTGAAAAGTAAGAAAACGATTTC
8265998 CTTAGTTTTTTACTTAGTAAACTATTTCC
129 CTTAGTTTTTTACTTAGTAAACTATTTCC
8266027 CACATCTGTA
Statistics
Matches: 148, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
165 24 0.16
166 45 0.30
167 77 0.52
168 2 0.01
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.38
Consensus pattern (164 bp):
TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTAGAAACATAATGAGAAAACGAT
TTCCAAAGTTTCTCATTCAATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTCCT
TAGTTTTTTACTTAGTAAACTATTTCCAACAACC
Found at i:8266227 original size:184 final size:184
Alignment explanation
Indices: 8265904--8266456 Score: 1043
Period size: 184 Copynumber: 3.0 Consensus size: 184
8265894 CCAATCAACA
* * *
8265904 TGTTATCTTGAAACATAATGAGAAAACGATTTCCAAAGTTTCTCATTCAATCTTTTCTAAAAATG
1 TGTTATTTTGAAAAATAATGAGAAAACGATTTCCATAGTTTCTCATTCAATCTTTTCTAAAAATG
8265969 AAATTGTTGAAAAGTAAGAAAACGATTTCCTTAGTTTTTTACTTAGTAAACTATTTCCCACATCT
66 AAATTGTTGAAAAGTAAGAAAACGATTTCCTTAGTTTTTTACTTAGTAAACTATTTCCCACATCT
8266034 GTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
131 GTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
8266088 TGTTATTTTGAAAAATAATGAGAAAACGATTTCCATAGTTTCTCATTCAATCTTTTCTAAAAATG
1 TGTTATTTTGAAAAATAATGAGAAAACGATTTCCATAGTTTCTCATTCAATCTTTTCTAAAAATG
8266153 AAATTGTTGAAAAGTAAGAAAACGATTTCCTTAGTTTTTTACTTAGTAAACTATTTCCCACATCT
66 AAATTGTTGAAAAGTAAGAAAACGATTTCCTTAGTTTTTTACTTAGTAAACTATTTCCCACATCT
*
8266218 GTAAGTCCTGTAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
131 GTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
*
8266272 TGTTATTTTGAAAAATAATGAGAAAACAATTTCCATAGTTTCTCATTCAATCTTTTCTAAAAATG
1 TGTTATTTTGAAAAATAATGAGAAAACGATTTCCATAGTTTCTCATTCAATCTTTTCTAAAAATG
*
8266337 AAAATGTTGAAAAGTAAGAAAACGATTTCCTTAGTTTTTTACTTAGTAAACTATTTCCCACATCT
66 AAATTGTTGAAAAGTAAGAAAACGATTTCCTTAGTTTTTTACTTAGTAAACTATTTCCCACATCT
*
8266402 GTAAGTCCTGCAGTGCATGATGTTTCCAAAAACCCTTCGGGAGCTTTTTGATGT
131 GTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
8266456 T
1 T
8266457 TTCAAACCCT
Statistics
Matches: 361, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
184 361 1.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (184 bp):
TGTTATTTTGAAAAATAATGAGAAAACGATTTCCATAGTTTCTCATTCAATCTTTTCTAAAAATG
AAATTGTTGAAAAGTAAGAAAACGATTTCCTTAGTTTTTTACTTAGTAAACTATTTCCCACATCT
GTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGT
Found at i:8267090 original size:76 final size:76
Alignment explanation
Indices: 8266397--8267083 Score: 1257
Period size: 76 Copynumber: 9.0 Consensus size: 76
8266387 CTATTTCCCA
* *
8266397 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAACCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
8266462 ACCCTCAGGGT
66 ACCCTCAGGGT
*
8266473 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTTAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
8266538 ACCCTCAGGGT
66 ACCCTCAGGGT
* *
8266549 CTTCTGTAAGTCCTGCAGCGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
8266614 ACCCTCAGGGT
66 ACCCTCAGGGT
*
8266625 CATCTGTAAGTCTTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
8266690 ACCCTCAGGGT
66 ACCCTCAGGGT
*
8266701 CATCTGTAAGTCTTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
*
8266766 ACCCTCTGGGT
66 ACCCTCAGGGT
8266777 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
8266842 ACCCTCAGGGT
66 ACCCTCAGGGT
* *
8266853 CATCTGTAAGTCTTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
8266918 ACCCTCAGGGT
66 ACCCTCAGGGT
*
8266929 CATCTGTAAGTCCTGTAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
8266994 ACCCTCAGGGT
66 ACCCTCAGGGT
* *
8267005 CATCTATAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
8267070 ACCCTCAGGGT
66 ACCCTCAGGGT
8267081 CAT
1 CAT
8267084 TCATAAGACC
Statistics
Matches: 591, Mismatches: 20, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 591 1.00
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (76 bp):
CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTAATGTTTTCAA
ACCCTCAGGGT
Found at i:8267249 original size:3 final size:3
Alignment explanation
Indices: 8267241--8267303 Score: 65
Period size: 3 Copynumber: 20.0 Consensus size: 3
8267231 TTTTACTTAA
* *
8267241 ATT ATT ATT ATT ATT ATA AAT ATT ATT ATT ATT ATT -TAT ATTT ATAT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T A-TT AT-T
8267288 ATAT ATT ATT ATT ATT
1 AT-T ATT ATT ATT ATT
8267304 TAATAAATAT
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
2 1 0.02
3 41 0.79
4 9 0.17
5 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:8267273 original size:24 final size:24
Alignment explanation
Indices: 8267241--8267315 Score: 89
Period size: 24 Copynumber: 3.0 Consensus size: 24
8267231 TTTTACTTAA
8267241 ATTATTATTATTATTATAAATATT
1 ATTATTATTATTATTATAAATATT
* *
8267265 ATTATTATTATTTATATTTATATATAT
1 ATTATTATTA-TTAT-TATAAATAT-T
*
8267292 ATTATTATTATT-TAATAAATATT
1 ATTATTATTATTATTATAAATATT
8267315 A
1 A
8267316 CAAACCCAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
23 2 0.05
24 16 0.37
25 5 0.12
26 9 0.21
27 11 0.26
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
ATTATTATTATTATTATAAATATT
Found at i:8268645 original size:15 final size:15
Alignment explanation
Indices: 8268625--8268674 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
8268615 ATCCATTAGT
8268625 TTTTAATATTATTAC
1 TTTTAATATTATTAC
* *
8268640 TTTTAAT-TTCTTTC
1 TTTTAATATTATTAC
8268654 ATTTTAATTATTATTA-
1 -TTTTAA-TATTATTAC
8268670 TTTTA
1 TTTTA
8268675 TTTTATTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
14 5 0.18
15 18 0.64
16 1 0.04
17 4 0.14
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTTTAATATTATTAC
Found at i:8268759 original size:14 final size:15
Alignment explanation
Indices: 8268742--8268774 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8268732 TATTATTAAG
8268742 TTATATAA-ATATAT
1 TTATATAATATATAT
*
8268756 TTATATAATATTTAT
1 TTATATAATATATAT
8268771 TTAT
1 TTAT
8268775 TTACTCTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATATAATATATAT
Found at i:8269170 original size:17 final size:15
Alignment explanation
Indices: 8269140--8269175 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 15
8269130 AAATTATAGT
8269140 AATAAATTTAAATTA
1 AATAAATTTAAATTA
8269155 AATAGAATTATAAATTA
1 AATA-AATT-TAAATTA
8269172 AATA
1 AATA
8269176 TATCTTTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.21
16 4 0.21
17 11 0.58
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (15 bp):
AATAAATTTAAATTA
Found at i:8278636 original size:42 final size:42
Alignment explanation
Indices: 8278577--8278661 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
8278567 CGAAACTCAT
*
8278577 TGCTTGTGCTAGTATTGCTCTTGAATTGCGTGGGTGATATTG
1 TGCTTGTGCCAGTATTGCTCTTGAATTGCGTGGGTGATATTG
8278619 TGCTTGTGCCAGTATTGCTCTTGAATTGCGTGGGTGATATTG
1 TGCTTGTGCCAGTATTGCTCTTGAATTGCGTGGGTGATATTG
8278661 T
1 T
8278662 TGAAAAGTGA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.14, C:0.13, G:0.31, T:0.42
Consensus pattern (42 bp):
TGCTTGTGCCAGTATTGCTCTTGAATTGCGTGGGTGATATTG
Found at i:8280703 original size:21 final size:21
Alignment explanation
Indices: 8280670--8280722 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8280660 ATTCTGACTA
*
8280670 TCGCATTGTGATTTTCCAAAT
1 TCGCATTGCGATTTTCCAAAT
* *
8280691 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTTCCAAAT
*
8280712 TCGCAATGCGA
1 TCGCATTGCGA
8280723 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCAAAT
Found at i:8280737 original size:20 final size:20
Alignment explanation
Indices: 8280712--8280824 Score: 199
Period size: 20 Copynumber: 5.7 Consensus size: 20
8280702 TTTTCCTAAT
8280712 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
8280732 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
8280752 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
8280772 TCACAATGTGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
8280792 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
*
8280812 TCGCAACGCGAAT
1 TCGCAATGCGAAT
8280825 CTGACTATCG
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 88 1.00
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.20
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:8280834 original size:20 final size:20
Alignment explanation
Indices: 8280811--8280857 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
8280801 GAATACGTAA
*
8280811 ATCGCAACGCGAATCTGACT
1 ATCGCAACGAGAATCTGACT
*
8280831 ATCGCAACGAGATTCTGACT
1 ATCGCAACGAGAATCTGACT
8280851 ATCGCAA
1 ATCGCAA
8280858 TACTGAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (20 bp):
ATCGCAACGAGAATCTGACT
Found at i:8284159 original size:20 final size:21
Alignment explanation
Indices: 8284134--8284222 Score: 123
Period size: 20 Copynumber: 4.4 Consensus size: 21
8284124 CAACGCGGAA
*
8284134 ATCGCAACG-TGAATATGACT
1 ATCGCAACGCGGAATATGACT
* *
8284154 ATCGCAACAC-GAAAATGACT
1 ATCGCAACGCGGAATATGACT
8284174 ATCGCAACGCGGAAT-TGACT
1 ATCGCAACGCGGAATATGACT
8284194 ATCGCAACGCGGAA-ATGACT
1 ATCGCAACGCGGAATATGACT
8284214 ATCGCAACG
1 ATCGCAACG
8284223 AGAGAATCGC
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
20 59 0.95
21 3 0.05
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.18
Consensus pattern (21 bp):
ATCGCAACGCGGAATATGACT
Found at i:8284244 original size:33 final size:33
Alignment explanation
Indices: 8284194--8284289 Score: 129
Period size: 33 Copynumber: 2.8 Consensus size: 33
8284184 GGAATTGACT
* **
8284194 ATCGCAACGCGGAAATGACTATCGCAACGAGAGA
1 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
*
8284228 ATCGCAATGCGAAATGAAAATCACAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
8284261 ATTGCAATGCGAAAATGAAAATCGCAACG
1 ATCGCAATGCG-AAATGAAAATCGCAACG
8284290 CGGATTTAGT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
33 30 0.55
34 25 0.45
ACGTcount: A:0.44, C:0.20, G:0.23, T:0.14
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:8284343 original size:14 final size:14
Alignment explanation
Indices: 8284324--8284412 Score: 52
Period size: 14 Copynumber: 5.6 Consensus size: 14
8284314 TTCATTTTCG
8284324 CATTGCGATTCTCT
1 CATTGCGATTCTCT
*
8284338 CATTGCGATTTTCATTTCG
1 CATTGCGA--TTC---TCT
8284357 CATTGCGATTCTCT
1 CATTGCGATTCTCT
* *
8284371 CGTTGCGATTTTCATTTCG
1 CATTGCGA--TTC---TCT
8284390 CATTGCGATTCTCT
1 CATTGCGATTCTCT
*
8284404 CGTTGCGAT
1 CATTGCGAT
8284413 AGTCATTTCC
Statistics
Matches: 58, Mismatches: 7, Indels: 20
0.68 0.08 0.24
Matches are distributed among these distances:
14 27 0.47
16 6 0.10
17 6 0.10
19 19 0.33
ACGTcount: A:0.13, C:0.25, G:0.18, T:0.44
Consensus pattern (14 bp):
CATTGCGATTCTCT
Found at i:8284361 original size:33 final size:33
Alignment explanation
Indices: 8284305--8284421 Score: 189
Period size: 33 Copynumber: 3.5 Consensus size: 33
8284295 TTAGTTTCAG
*
8284305 GTTGCTATTTTCATTTTCGCATTGCGATTCTCTC
1 GTTGCGATTTTCA-TTTCGCATTGCGATTCTCTC
*
8284339 ATTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
8284372 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
1 GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
**
8284405 GTTGCGATAGTCATTTC
1 GTTGCGATTTTCATTTC
8284422 CGCGTTGAGA
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
33 67 0.86
34 11 0.14
ACGTcount: A:0.14, C:0.23, G:0.17, T:0.46
Consensus pattern (33 bp):
GTTGCGATTTTCATTTCGCATTGCGATTCTCTC
Found at i:8284557 original size:14 final size:14
Alignment explanation
Indices: 8284538--8284574 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
8284528 CATCAATTAA
8284538 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
8284552 ACAAATCATCTTTT
1 ACAAATCAACATTT
8284566 ACAAATCAA
1 ACAAATCAA
8284575 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:8286053 original size:42 final size:42
Alignment explanation
Indices: 8285974--8286065 Score: 105
Period size: 42 Copynumber: 2.2 Consensus size: 42
8285964 CCTCTTCAAC
* * *
8285974 GATGACAGTGGCCTCTTGAACGGTGGGAGGGGACTCTTGAGG
1 GATGACAGAGGCCTCTTGAACGATGGGAGAGGACTCTTGAGG
* * **
8286016 GATGATAGAGGCCTCTTGAACGATAGGG-GAGGCCTCTTGAAC
1 GATGACAGAGGCCTCTTGAACGAT-GGGAGAGGACTCTTGAGG
8286058 GATGACAG
1 GATGACAG
8286066 GTGAGTCGGG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
42 38 0.93
43 3 0.07
ACGTcount: A:0.24, C:0.17, G:0.38, T:0.21
Consensus pattern (42 bp):
GATGACAGAGGCCTCTTGAACGATGGGAGAGGACTCTTGAGG
Found at i:8286573 original size:20 final size:20
Alignment explanation
Indices: 8286550--8286654 Score: 156
Period size: 20 Copynumber: 5.2 Consensus size: 20
8286540 CTTAAAATCA
8286550 CAACGCGAAAATGACTATCG
1 CAACGCGAAAATGACTATCG
8286570 CAACGCGAAAATGACTATCG
1 CAACGCGAAAATGACTATCG
*
8286590 CAATGCGAAAATGACTATCG
1 CAACGCGAAAATGACTATCG
* *
8286610 CAATGCGAAAATGACTATTG
1 CAACGCGAAAATGACTATCG
* **
8286630 CAATGCGAATTTGACTATCG
1 CAACGCGAAAATGACTATCG
8286650 CAACG
1 CAACG
8286655 AAAGAATCGC
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 79 1.00
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (20 bp):
CAACGCGAAAATGACTATCG
Found at i:8286647 original size:60 final size:54
Alignment explanation
Indices: 8286545--8286673 Score: 150
Period size: 60 Copynumber: 2.3 Consensus size: 54
8286535 TGAAACTTAA
* *
8286545 AATCACAACGCGAAAATGACTATCGCAACGCGAAAATGACTATCGCAATGCGAAAATG
1 AATCGCAATGCGAAAATGACTATCGCAACGCGAAAATGACTATCGCAA--CG-AAA-G
* * **
8286603 ACTATCGCAATGCGAAAATGACTATTGCAATGCGAATTTGACTATCGCAACGAAAG
1 A--ATCGCAATGCGAAAATGACTATCGCAACGCGAAAATGACTATCGCAACGAAAG
8286659 AATCGCAATGCGAAA
1 AATCGCAATGCGAAA
8286674 TGAAAATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
54 14 0.22
56 2 0.03
57 3 0.05
58 3 0.05
60 41 0.65
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (54 bp):
AATCGCAATGCGAAAATGACTATCGCAACGCGAAAATGACTATCGCAACGAAAG
Found at i:8286667 original size:34 final size:38
Alignment explanation
Indices: 8286554--8286673 Score: 149
Period size: 40 Copynumber: 3.2 Consensus size: 38
8286544 AAATCACAAC
8286554 GCGAAAATGACTATCGCAACGCGAAAATGACTATCGCAAT
1 GCGAAAATGACTATCGCAA-GCGAAAATGAC-ATCGCAAT
*
8286594 GCGAAAATGACTATCGCAATGCGAAAATGACTATTGCAAT
1 GCGAAAATGACTATCGCAA-GCGAAAATGAC-ATCGCAAT
**
8286634 GCGAATTTGACTATCGCAA-CG-AAA-GA-ATCGCAAT
1 GCGAAAATGACTATCGCAAGCGAAAATGACATCGCAAT
8286668 GCGAAA
1 GCGAAA
8286674 TGAAAATTAT
Statistics
Matches: 74, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
34 12 0.16
36 2 0.03
37 3 0.04
38 2 0.03
40 55 0.74
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.19
Consensus pattern (38 bp):
GCGAAAATGACTATCGCAAGCGAAAATGACATCGCAAT
Found at i:8286751 original size:20 final size:20
Alignment explanation
Indices: 8286699--8286875 Score: 130
Period size: 20 Copynumber: 9.5 Consensus size: 20
8286689 GATTCTCTCG
**
8286699 TTGCGATAGTCAAATTCGCA
1 TTGCGATAGTCATTTTCGCA
8286719 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
8286739 TTGCGATAGTCATTTTCGCG
1 TTGCGATAGTCATTTTCGCA
*
8286759 TTACGAT--T--TTGTT-G--
1 TTGCGATAGTCATT-TTCGCA
**
8286773 TTGCGATTTTCA-TTTCGCA
1 TTGCGATAGTCATTTTCGCA
*
8286792 TTGCGAT--TC--TCTCG--
1 TTGCGATAGTCATTTTCGCA
* * *
8286806 TTGCAATAGTCATTTTCACG
1 TTGCGATAGTCATTTTCGCA
* * *
8286826 TTGCAATAGTCATTTTCACG
1 TTGCGATAGTCATTTTCGCA
8286846 TTGCGATAGTCATTTTCGCA
1 TTGCGATAGTCATTTTCGCA
8286866 TTGCGATAGT
1 TTGCGATAGT
8286876 AAACTATTCT
Statistics
Matches: 131, Mismatches: 12, Indels: 28
0.77 0.07 0.16
Matches are distributed among these distances:
14 12 0.09
16 12 0.09
17 6 0.05
18 4 0.03
19 7 0.05
20 90 0.69
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (20 bp):
TTGCGATAGTCATTTTCGCA
Found at i:8288795 original size:20 final size:20
Alignment explanation
Indices: 8288772--8288821 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
8288762 TTGAAACTTT
8288772 AAATCGCAACACGAAAATGA
1 AAATCGCAACACGAAAATGA
8288792 AAATCGCAACACGAAAATGA
1 AAATCGCAACACGAAAATGA
**
8288812 CTATCGCAAC
1 AAATCGCAAC
8288822 GCAAGAATCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.50, C:0.24, G:0.14, T:0.12
Consensus pattern (20 bp):
AAATCGCAACACGAAAATGA
Found at i:8288851 original size:33 final size:34
Alignment explanation
Indices: 8288793--8288863 Score: 92
Period size: 33 Copynumber: 2.1 Consensus size: 34
8288783 CGAAAATGAA
**
8288793 AATCGCAACACGAAAATGACTATCGCAACG-CAAG
1 AATCGCAACACGAAAATGAAAATCGCAACGAC-AG
*
8288827 AATCGCAACGCG-AAATGAAAATCGCAACGACAG
1 AATCGCAACACGAAAATGAAAATCGCAACGACAG
8288860 AATC
1 AATC
8288864 ACATTGCGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 21 0.64
34 12 0.36
ACGTcount: A:0.45, C:0.25, G:0.18, T:0.11
Consensus pattern (34 bp):
AATCGCAACACGAAAATGAAAATCGCAACGACAG
Found at i:8289243 original size:22 final size:22
Alignment explanation
Indices: 8289181--8289246 Score: 98
Period size: 22 Copynumber: 3.0 Consensus size: 22
8289171 TGACCGTGAA
* *
8289181 TGATTTCGTCGGAGATTGAGAC
1 TGATTTCGTCGGAGATGGGGAC
8289203 TGATATT-GTCGGAGATGGGGAC
1 TGAT-TTCGTCGGAGATGGGGAC
8289225 TGATTTCGTCGGAGATGGGGAC
1 TGATTTCGTCGGAGATGGGGAC
8289247 GGATGTCGCC
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
21 2 0.05
22 36 0.90
23 2 0.05
ACGTcount: A:0.21, C:0.12, G:0.38, T:0.29
Consensus pattern (22 bp):
TGATTTCGTCGGAGATGGGGAC
Found at i:8289473 original size:20 final size:20
Alignment explanation
Indices: 8289443--8289575 Score: 203
Period size: 20 Copynumber: 6.7 Consensus size: 20
8289433 CGATAGTCAG
* *
8289443 ATTCGCGTTGCGATTTACAT
1 ATTCGCATTGCGATTTACGT
*
8289463 ATTTGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
8289483 ATTCGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
* *
8289503 ATTCGCGTTACGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
8289523 ATTTGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
*
8289543 ATTTGCATTGCGATTTACGT
1 ATTCGCATTGCGATTTACGT
8289563 ATTCGCATTGCGA
1 ATTCGCATTGCGA
8289576 ATTAGGAAAA
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 103 1.00
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.41
Consensus pattern (20 bp):
ATTCGCATTGCGATTTACGT
Done.