Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007999.1 Hibiscus syriacus cultivar Beakdansim tig00110450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11700749
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 34 of 50
Found at i:8289518 original size:60 final size:60
Alignment explanation
Indices: 8289443--8289568 Score: 225
Period size: 60 Copynumber: 2.1 Consensus size: 60
8289433 CGATAGTCAG
*
8289443 ATTCGCGTTGCGATTTACATATTTGCATTGCGATTTACGTATTCGCATTGCGATTTACGT
1 ATTCGCGTTACGATTTACATATTTGCATTGCGATTTACGTATTCGCATTGCGATTTACGT
* *
8289503 ATTCGCGTTACGATTTACGTATTTGCATTGCGATTTACGTATTTGCATTGCGATTTACGT
1 ATTCGCGTTACGATTTACATATTTGCATTGCGATTTACGTATTCGCATTGCGATTTACGT
8289563 ATTCGC
1 ATTCGC
8289569 ATTGCGAATT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (60 bp):
ATTCGCGTTACGATTTACATATTTGCATTGCGATTTACGTATTCGCATTGCGATTTACGT
Found at i:8289596 original size:21 final size:21
Alignment explanation
Indices: 8289572--8289617 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
8289562 TATTCGCATT
8289572 GCGAATTAGGAAAATCGCAAC
1 GCGAATTAGGAAAATCGCAAC
* *
8289593 GCGAATTTGGAAAATCGCAAT
1 GCGAATTAGGAAAATCGCAAC
8289614 GCGA
1 GCGA
8289618 TAGTCAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.26, T:0.17
Consensus pattern (21 bp):
GCGAATTAGGAAAATCGCAAC
Found at i:8299738 original size:2 final size:2
Alignment explanation
Indices: 8299731--8299755 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8299721 GAGGGACTGG
8299731 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8299756 GTGAAGTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8301138 original size:37 final size:37
Alignment explanation
Indices: 8301097--8301170 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
8301087 AATAAAAGAG
*
8301097 AAAGAATAAAGGATTGAAAAGTGTGAAGGCAAACCCT
1 AAAGAATAAAGGATTAAAAAGTGTGAAGGCAAACCCT
8301134 AAAGAATAAAGGATTAAAAAGTGTGAAGGCAAACCCT
1 AAAGAATAAAGGATTAAAAAGTGTGAAGGCAAACCCT
8301171 TTTTATAAGC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.50, C:0.11, G:0.23, T:0.16
Consensus pattern (37 bp):
AAAGAATAAAGGATTAAAAAGTGTGAAGGCAAACCCT
Found at i:8301595 original size:203 final size:203
Alignment explanation
Indices: 8301246--8301651 Score: 812
Period size: 203 Copynumber: 2.0 Consensus size: 203
8301236 ACCTTGATAT
8301246 TATCCAAATTAGACAGAATGGCATGGTAGAAGTTCCCCCAAACCGCTTGATGTGTAACACACTAT
1 TATCCAAATTAGACAGAATGGCATGGTAGAAGTTCCCCCAAACCGCTTGATGTGTAACACACTAT
8301311 ACCCGACCACGTAGGATGACTAGAATATTCTAAGTGCACATTAGATTTTGAAGAGAATCGGACAA
66 ACCCGACCACGTAGGATGACTAGAATATTCTAAGTGCACATTAGATTTTGAAGAGAATCGGACAA
8301376 ACCCTAATCATGTGCACTAAGCGAAAATAGTTACAAGCATCCATTAAACATGCAACACATCCAAA
131 ACCCTAATCATGTGCACTAAGCGAAAATAGTTACAAGCATCCATTAAACATGCAACACATCCAAA
8301441 TGGGACAA
196 TGGGACAA
8301449 TATCCAAATTAGACAGAATGGCATGGTAGAAGTTCCCCCAAACCGCTTGATGTGTAACACACTAT
1 TATCCAAATTAGACAGAATGGCATGGTAGAAGTTCCCCCAAACCGCTTGATGTGTAACACACTAT
8301514 ACCCGACCACGTAGGATGACTAGAATATTCTAAGTGCACATTAGATTTTGAAGAGAATCGGACAA
66 ACCCGACCACGTAGGATGACTAGAATATTCTAAGTGCACATTAGATTTTGAAGAGAATCGGACAA
8301579 ACCCTAATCATGTGCACTAAGCGAAAATAGTTACAAGCATCCATTAAACATGCAACACATCCAAA
131 ACCCTAATCATGTGCACTAAGCGAAAATAGTTACAAGCATCCATTAAACATGCAACACATCCAAA
8301644 TGGGACAA
196 TGGGACAA
8301652 CATAAAATTA
Statistics
Matches: 203, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
203 203 1.00
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.22
Consensus pattern (203 bp):
TATCCAAATTAGACAGAATGGCATGGTAGAAGTTCCCCCAAACCGCTTGATGTGTAACACACTAT
ACCCGACCACGTAGGATGACTAGAATATTCTAAGTGCACATTAGATTTTGAAGAGAATCGGACAA
ACCCTAATCATGTGCACTAAGCGAAAATAGTTACAAGCATCCATTAAACATGCAACACATCCAAA
TGGGACAA
Found at i:8303867 original size:18 final size:19
Alignment explanation
Indices: 8303846--8303892 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
8303836 GTAAAAAGAT
*
8303846 ATTAAAAT-AATAAAAGTG
1 ATTAAAATAAATAAAAGTA
*
8303864 ATT-AAATAAATAGAAGTA
1 ATTAAAATAAATAAAAGTA
*
8303882 ATTAAAGTAAA
1 ATTAAAATAAA
8303893 AATAAGAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 4 0.17
18 14 0.58
19 6 0.25
ACGTcount: A:0.62, C:0.00, G:0.11, T:0.28
Consensus pattern (19 bp):
ATTAAAATAAATAAAAGTA
Found at i:8304521 original size:28 final size:28
Alignment explanation
Indices: 8304489--8304554 Score: 123
Period size: 28 Copynumber: 2.3 Consensus size: 28
8304479 ACAAAGCTTT
8304489 AAAATAAAAGAAAAAAGGGAAAAACTTG
1 AAAATAAAAGAAAAAAGGGAAAAACTTG
8304517 AAAATAAAAGAAAAAAGGGAAAAACTTG
1 AAAATAAAAGAAAAAAGGGAAAAACTTG
8304545 AAAAGTAAAA
1 AAAA-TAAAA
8304555 AGAGAAAACT
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 32 0.86
29 5 0.14
ACGTcount: A:0.70, C:0.03, G:0.17, T:0.11
Consensus pattern (28 bp):
AAAATAAAAGAAAAAAGGGAAAAACTTG
Found at i:8305675 original size:24 final size:24
Alignment explanation
Indices: 8305648--8305719 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 24
8305638 AAATGGAGAT
* *
8305648 ATCAAAAATCAAAATAGAATTCAG
1 ATCAAAAATCATAACAGAATTCAG
* *
8305672 ATCAAATATCATAACAGAATCCAG
1 ATCAAAAATCATAACAGAATTCAG
*
8305696 ATCAGAAATCATAACAGAATTCAG
1 ATCAAAAATCATAACAGAATTCAG
8305720 GTAATGTATC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.53, C:0.17, G:0.10, T:0.21
Consensus pattern (24 bp):
ATCAAAAATCATAACAGAATTCAG
Found at i:8307959 original size:249 final size:249
Alignment explanation
Indices: 8307521--8308516 Score: 1938
Period size: 249 Copynumber: 4.0 Consensus size: 249
8307511 AAGTACCTTT
8307521 AACATTTGACTTTTGATGAAATAAATTATAAGATACAGATCCATGTTGATTTCTTTATTACCAAA
1 AACATTTGACTTTTGATGAAATAAATTATAAGATACAGATCCATGTTGATTTCTTTATTACCAAA
8307586 CACAGAACTTGAAATTTAATTCCAACTGTCCTCCAATTCTTATAATAATCATCTGAGCCATATTC
66 CACAGAACTTGAAATTTAATTCCAACTGTCCTCCAATTCTTATAATAATCATCTGAGCCATATTC
8307651 AGTTACATACTTTCTACTGCATTCATATCGAGTGTAGAACTTCATTAATTACACATATGAGATCA
131 AGTTACATACTTTCTACTGCATTCATATCGAGTGTAGAACTTCATTAATTACACATATGAGATCA
8307716 AACATTTACATTCATGCATTTACCAATACCAACATGTTCTATAAAGCATAAAGA
196 AACATTTACATTCATGCATTTACCAATACCAACATGTTCTATAAAGCATAAAGA
*
8307770 AACATTTGACTTTTGATGAAATAAATTATAAGATACATATCCATGTTGATTTCTTTATTACCAAA
1 AACATTTGACTTTTGATGAAATAAATTATAAGATACAGATCCATGTTGATTTCTTTATTACCAAA
8307835 CACAGAACTTGAAATTTAATTCCAACTGTCCTCCAATTCTTATAATAATCATCTGAGCCATATTC
66 CACAGAACTTGAAATTTAATTCCAACTGTCCTCCAATTCTTATAATAATCATCTGAGCCATATTC
8307900 AGTTACATACTTTCTACTGCATTCATATCGAGTGTAGAACTTCATTAATTACACATATGAGATCA
131 AGTTACATACTTTCTACTGCATTCATATCGAGTGTAGAACTTCATTAATTACACATATGAGATCA
*
8307965 AACATTTACATTCATGCATTTACCAATTCCAACATGTTCTATAAAGCATAAAGA
196 AACATTTACATTCATGCATTTACCAATACCAACATGTTCTATAAAGCATAAAGA
*
8308019 AACATTTGACTTTTGATGAAATAAATTATAAGATACATATCCATGTTGATTTCTTTATTACCAAA
1 AACATTTGACTTTTGATGAAATAAATTATAAGATACAGATCCATGTTGATTTCTTTATTACCAAA
8308084 CACAGAACTTGAAATTTAATTCCAACTGTCCTCCAATTCTTATAATAATCATCTGAGCCATATTC
66 CACAGAACTTGAAATTTAATTCCAACTGTCCTCCAATTCTTATAATAATCATCTGAGCCATATTC
8308149 AGTTACATACTTTCTACTGCATTCATATCGAGTGTAGAACTTCATTAATTACACATATGAGATCA
131 AGTTACATACTTTCTACTGCATTCATATCGAGTGTAGAACTTCATTAATTACACATATGAGATCA
8308214 AACATTTACATTCATGCATTTACCAATACCAACATGTTCTATAAAGCATAAAGA
196 AACATTTACATTCATGCATTTACCAATACCAACATGTTCTATAAAGCATAAAGA
*
8308268 AACATTTGACTTTTGATGAAATAAATTATAAGATACAGATCCATGTTGATTTCTTTATTACTAAA
1 AACATTTGACTTTTGATGAAATAAATTATAAGATACAGATCCATGTTGATTTCTTTATTACCAAA
8308333 CACAGAACTTGAAATTTAATTCCAACTGTCCTCCAATTCTTATAATAATCATCTGAGCCATATTC
66 CACAGAACTTGAAATTTAATTCCAACTGTCCTCCAATTCTTATAATAATCATCTGAGCCATATTC
* *
8308398 AGTTACATACTTTTTACTGCATTCATATCGAGTGTAGAACTTCATTAATTACACATATGAAATCA
131 AGTTACATACTTTCTACTGCATTCATATCGAGTGTAGAACTTCATTAATTACACATATGAGATCA
8308463 AACATTTACATTCATGCATTTACCAATACCAACATGTTCTATAAAGCATAAAGA
196 AACATTTACATTCATGCATTTACCAATACCAACATGTTCTATAAAGCATAAAGA
8308517 TGTAGTAATG
Statistics
Matches: 740, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
249 740 1.00
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.35
Consensus pattern (249 bp):
AACATTTGACTTTTGATGAAATAAATTATAAGATACAGATCCATGTTGATTTCTTTATTACCAAA
CACAGAACTTGAAATTTAATTCCAACTGTCCTCCAATTCTTATAATAATCATCTGAGCCATATTC
AGTTACATACTTTCTACTGCATTCATATCGAGTGTAGAACTTCATTAATTACACATATGAGATCA
AACATTTACATTCATGCATTTACCAATACCAACATGTTCTATAAAGCATAAAGA
Found at i:8324065 original size:18 final size:18
Alignment explanation
Indices: 8324044--8324086 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
8324034 AATTGTTTTA
8324044 AAAATAAAAGATAAGAAT
1 AAAATAAAAGATAAGAAT
* *
8324062 AAAATCAAAGATAAGGAT
1 AAAATAAAAGATAAGAAT
8324080 AAAATAA
1 AAAATAA
8324087 TTAAATTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.70, C:0.02, G:0.12, T:0.16
Consensus pattern (18 bp):
AAAATAAAAGATAAGAAT
Found at i:8324728 original size:20 final size:20
Alignment explanation
Indices: 8324700--8324737 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8324690 TTTAAAAATA
*
8324700 AAAATAAAAAAAAACTTTGG
1 AAAAGAAAAAAAAACTTTGG
*
8324720 AAAAGAAAAGAAAACTTT
1 AAAAGAAAAAAAAACTTT
8324738 TATAAAACCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.05, G:0.11, T:0.18
Consensus pattern (20 bp):
AAAAGAAAAAAAAACTTTGG
Found at i:8324890 original size:12 final size:13
Alignment explanation
Indices: 8324858--8324890 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8324848 TAAAAATAAG
*
8324858 AGATAATTCTTAA
1 AGATATTTCTTAA
8324871 AGATATTTCTTAA
1 AGATATTTCTTAA
8324884 A-ATATTT
1 AGATATTT
8324891 AAACTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (13 bp):
AGATATTTCTTAA
Found at i:8325772 original size:10 final size:9
Alignment explanation
Indices: 8325728--8325771 Score: 63
Period size: 9 Copynumber: 5.0 Consensus size: 9
8325718 AAAACATAAA
8325728 CATTTTTTT
1 CATTTTTTT
8325737 C-TTTTTTT
1 CATTTTTTT
**
8325745 CACCTTTTT
1 CATTTTTTT
8325754 CATTTTTTT
1 CATTTTTTT
8325763 CATTTTTTT
1 CATTTTTTT
8325772 TGGTTTTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
8 8 0.27
9 22 0.73
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (9 bp):
CATTTTTTT
Found at i:8325784 original size:24 final size:24
Alignment explanation
Indices: 8325757--8325803 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
8325747 CCTTTTTCAT
*
8325757 TTTTTTCATTTTTTTTGGTTTTTC
1 TTTTTGCATTTTTTTTGGTTTTTC
* *
8325781 TTTTTGCCTTTTTTTTTGTTTTT
1 TTTTTGCATTTTTTTTGGTTTTT
8325804 TCGCTTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.02, C:0.09, G:0.09, T:0.81
Consensus pattern (24 bp):
TTTTTGCATTTTTTTTGGTTTTTC
Found at i:8325797 original size:19 final size:19
Alignment explanation
Indices: 8325775--8325823 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
8325765 TTTTTTTTGG
*
8325775 TTTTTCTTTTTGC-CTTTT
1 TTTTTTTTTTTGCGCTTTT
8325793 TTTTTGTTTTTT-CGCTTTT
1 TTTTT-TTTTTTGCGCTTTT
8325812 TTTTTTTTTTTG
1 TTTTTTTTTTTG
8325824 AAAAGATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 12 0.44
19 15 0.56
ACGTcount: A:0.00, C:0.10, G:0.08, T:0.82
Consensus pattern (19 bp):
TTTTTTTTTTTGCGCTTTT
Found at i:8328403 original size:41 final size:42
Alignment explanation
Indices: 8328312--8328471 Score: 218
Period size: 42 Copynumber: 3.9 Consensus size: 42
8328302 TACGGCGTTT
* * *
8328312 AGTGCATGACTATTGTTGCGTTTATTGCAAAAATGCCACTAA
1 AGTGCATGACTATTGTGGCGTTTATTACAAAAACGCCACTAA
* *
8328354 AGTGCATGACTTTTGTGGCGTTTATTACAAAAA-GCCACTAC
1 AGTGCATGACTATTGTGGCGTTTATTACAAAAACGCCACTAA
* *
8328395 AGTTCATGACTATTGTGGCGTTTA-TA-AAAAACGCCGCTAA
1 AGTGCATGACTATTGTGGCGTTTATTACAAAAACGCCACTAA
* *
8328435 AGTGCATGACTATTGCGGCGTTTATTACAGAAACGCC
1 AGTGCATGACTATTGTGGCGTTTATTACAAAAACGCC
8328472 GCCTTATAAG
Statistics
Matches: 104, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
39 5 0.05
40 30 0.29
41 31 0.30
42 38 0.37
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31
Consensus pattern (42 bp):
AGTGCATGACTATTGTGGCGTTTATTACAAAAACGCCACTAA
Found at i:8338233 original size:21 final size:21
Alignment explanation
Indices: 8338203--8338280 Score: 64
Period size: 17 Copynumber: 4.0 Consensus size: 21
8338193 TATCTGCAAA
8338203 AAAT-AATTAAATAAAATATT
1 AAATAAATTAAATAAAATATT
*
8338223 AAATAAATTAAAT---A-CTT
1 AAATAAATTAAATAAAATATT
8338240 AAATAAATTAAATACAAAATATT
1 AAATAAATTAAAT--AAAATATT
8338263 -AA-AAA-TATAATAAAATAT
1 AAATAAATTA-AATAAAATAT
8338281 ACCATAGAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
17 15 0.31
18 1 0.02
19 7 0.15
20 6 0.12
21 14 0.29
22 3 0.06
23 2 0.04
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (21 bp):
AAATAAATTAAATAAAATATT
Found at i:8338234 original size:9 final size:9
Alignment explanation
Indices: 8338220--8338253 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
8338210 TAAATAAAAT
8338220 ATTAAATAA
1 ATTAAATAA
8338229 ATTAAAT-A
1 ATTAAATAA
*
8338237 CTTAAATAA
1 ATTAAATAA
8338246 ATTAAATA
1 ATTAAATA
8338254 CAAAATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (9 bp):
ATTAAATAA
Found at i:8338241 original size:17 final size:17
Alignment explanation
Indices: 8338210--8338254 Score: 74
Period size: 17 Copynumber: 2.7 Consensus size: 17
8338200 AAAAAATAAT
*
8338210 TAAATAAAATA-TTAAA
1 TAAATTAAATACTTAAA
8338226 TAAATTAAATACTTAAA
1 TAAATTAAATACTTAAA
8338243 TAAATTAAATAC
1 TAAATTAAATAC
8338255 AAAATATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
16 10 0.37
17 17 0.63
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.33
Consensus pattern (17 bp):
TAAATTAAATACTTAAA
Found at i:8344414 original size:16 final size:17
Alignment explanation
Indices: 8344382--8344420 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
8344372 TAATAGTGAG
8344382 TTATTATAAAATATATT
1 TTATTATAAAATATATT
*
8344399 TTATTAT-AATTATATT
1 TTATTATAAAATATATT
8344415 TT-TTAT
1 TTATTAT
8344421 TTATACTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.19
16 10 0.48
17 7 0.33
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTATTATAAAATATATT
Found at i:8344443 original size:19 final size:18
Alignment explanation
Indices: 8344382--8344444 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 18
8344372 TAATAGTGAG
*
8344382 TTATTATAA-AATATATT
1 TTATTATAATTATATATT
*
8344399 TTATTATAATTATATTTT
1 TTATTATAATTATATATT
* *
8344417 TTATTTATACTTTTTATATT
1 TTA-TTATA-ATTATATATT
8344437 TTATTATA
1 TTATTATA
8344445 GTTTAAATTG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
17 9 0.24
18 9 0.24
19 10 0.26
20 10 0.26
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (18 bp):
TTATTATAATTATATATT
Found at i:8345317 original size:20 final size:20
Alignment explanation
Indices: 8345294--8345332 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
8345284 TTTTCTTAAG
8345294 AAAATTAATGAATAT-TTTTA
1 AAAATT-ATGAATATATTTTA
*
8345314 AAAATTCTGAATATATTTT
1 AAAATTATGAATATATTTT
8345333 TTAAATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (20 bp):
AAAATTATGAATATATTTTA
Found at i:8346819 original size:17 final size:17
Alignment explanation
Indices: 8346797--8346829 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8346787 AGGGTTATGT
8346797 GAGAGAAAATTATTTTA
1 GAGAGAAAATTATTTTA
*
8346814 GAGAGATAATTATTTT
1 GAGAGAAAATTATTTT
8346830 TGGGATCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.39
Consensus pattern (17 bp):
GAGAGAAAATTATTTTA
Found at i:8349156 original size:21 final size:21
Alignment explanation
Indices: 8349130--8349171 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
8349120 CCAGAATGGG
*
8349130 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
8349151 GGGAATCGATACCCCTTCATA
1 GGGAATCGATACCCCTTCATA
8349172 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (21 bp):
GGGAATCGATACCCCTTCATA
Found at i:8350817 original size:19 final size:20
Alignment explanation
Indices: 8350774--8350821 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
8350764 TCTAAATCCT
*
8350774 TTTTCAAAATTTCATTTTGG
1 TTTTCAAAATCTCATTTTGG
* *
8350794 CTTTCAAAATCT-ATTTTTG
1 TTTTCAAAATCTCATTTTGG
8350813 TTTTCAAAA
1 TTTTCAAAA
8350822 GAAAATCGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.52
Consensus pattern (20 bp):
TTTTCAAAATCTCATTTTGG
Found at i:8352031 original size:21 final size:21
Alignment explanation
Indices: 8352005--8352046 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8351995 CAGAATGGGG
* *
8352005 GGGAATCGGTACCCCTTCATA
1 GGGAATCGATACCCCATCATA
8352026 GGGAATCGATACCCCATCATA
1 GGGAATCGATACCCCATCATA
8352047 ATATTCAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (21 bp):
GGGAATCGATACCCCATCATA
Found at i:8352233 original size:20 final size:19
Alignment explanation
Indices: 8352158--8352229 Score: 64
Period size: 20 Copynumber: 3.9 Consensus size: 19
8352148 AAACCATGCA
8352158 GGGGGAATCTGTACCCCTGG
1 GGGGGAATCTGTACCCCT-G
* *
8352178 GGGGGAATTTGT-TCCC--
1 GGGGGAATCTGTACCCCTG
8352194 -GGGGAATC-GATACCCCCTG
1 GGGGGAATCTG-TA-CCCCTG
8352213 GGGGGAATCTGTACCCC
1 GGGGGAATCTGTACCCC
8352230 CTGGACAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 15
0.68 0.07 0.25
Matches are distributed among these distances:
14 1 0.02
15 8 0.20
17 3 0.07
19 7 0.17
20 21 0.51
21 1 0.02
ACGTcount: A:0.17, C:0.26, G:0.36, T:0.21
Consensus pattern (19 bp):
GGGGGAATCTGTACCCCTG
Found at i:8354447 original size:46 final size:46
Alignment explanation
Indices: 8354380--8354473 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
8354370 CCTTTGTGAC
*
8354380 CATCGATGATAGTTTATACCTTTAAGTGGTTCAAGTTTGGAGAGAT
1 CATCGATGATAGTTTATACCTTCAAGTGGTTCAAGTTTGGAGAGAT
*
8354426 CATCGATGATAGTTTATACCTTCAAGTGGTTCGAGTTTGGAGAGAT
1 CATCGATGATAGTTTATACCTTCAAGTGGTTCAAGTTTGGAGAGAT
8354472 CA
1 CA
8354474 GATACCATCT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (46 bp):
CATCGATGATAGTTTATACCTTCAAGTGGTTCAAGTTTGGAGAGAT
Found at i:8355069 original size:62 final size:62
Alignment explanation
Indices: 8354965--8355088 Score: 203
Period size: 62 Copynumber: 2.0 Consensus size: 62
8354955 GAAAGACATC
* * *
8354965 ATGTAGATGTGAACAATGGGAGCTGATTATCATTAAAGGAAAGAACAACAAATCTTCCTATA
1 ATGTAGATGTGAACAATGGGAGCTAATTATCATAAAACGAAAGAACAACAAATCTTCCTATA
* *
8355027 ATGTAGATGTGAGCAATGGGAGCTAATTATCATAAAACGAAAGAACATCAAATCTTCCTATA
1 ATGTAGATGTGAACAATGGGAGCTAATTATCATAAAACGAAAGAACAACAAATCTTCCTATA
8355089 GAGGGCTGAA
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.26
Consensus pattern (62 bp):
ATGTAGATGTGAACAATGGGAGCTAATTATCATAAAACGAAAGAACAACAAATCTTCCTATA
Found at i:8360077 original size:32 final size:32
Alignment explanation
Indices: 8360011--8360077 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
8360001 TCATGACTTC
* *
8360011 AATAATAAAAATGAATGTTGTTCTTCCTAAAT
1 AATAATAAAAATGAATGTCGTTCTTCCCAAAT
*
8360043 AATAATAAAAATGAATGTCGTTCTTCCCAGAT
1 AATAATAAAAATGAATGTCGTTCTTCCCAAAT
8360075 AAT
1 AAT
8360078 CTAAATTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.34
Consensus pattern (32 bp):
AATAATAAAAATGAATGTCGTTCTTCCCAAAT
Found at i:8360549 original size:27 final size:27
Alignment explanation
Indices: 8360511--8360573 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
8360501 ACACAAGAAC
* *
8360511 TCAAACTTAAGACATGCTTAAGTGATG
1 TCAAACTGAAGACATGCTTAAATGATG
8360538 TCAAACTGAAGACATGCTTAAATGATG
1 TCAAACTGAAGACATGCTTAAATGATG
8360565 TCAAACTGA
1 TCAAACTGA
8360574 TTATCACTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (27 bp):
TCAAACTGAAGACATGCTTAAATGATG
Found at i:8367523 original size:53 final size:53
Alignment explanation
Indices: 8367441--8367542 Score: 168
Period size: 53 Copynumber: 1.9 Consensus size: 53
8367431 GGCTCAGGTA
* *
8367441 TTGGGGTATCTAGAAATGTCGAAGCATCTTCATTCATTGGCAAGATGCAGACG
1 TTGGGGTATCTAGAAATGACGAAGCATCTTCATTCATTGACAAGATGCAGACG
* *
8367494 TTGGGGTATCTAGAAATGACGAGGTATCTTCATTCATTGACAAGATGCA
1 TTGGGGTATCTAGAAATGACGAAGCATCTTCATTCATTGACAAGATGCA
8367543 CTCCCATAGG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (53 bp):
TTGGGGTATCTAGAAATGACGAAGCATCTTCATTCATTGACAAGATGCAGACG
Found at i:8368961 original size:64 final size:63
Alignment explanation
Indices: 8368856--8369017 Score: 159
Period size: 63 Copynumber: 2.6 Consensus size: 63
8368846 ATTGTTCAAG
* * ** *
8368856 GTGTATCGATACACATA-AAGTGCATCGATGCACTAATTTAAAATAAAAACATCGAAT-GCCATC
1 GTGTATCGATGCACA-AGTAGTGCATCGATGCACCCACTT-AAATAAAAACATCGAATAG-CATC
8368919 A
63 A
* * * **
8368920 GTGTATCGATGCACAAGTAGTGCATCGATGCACCCCCTTAAATACAAACATCGAATAGGATTT
1 GTGTATCGATGCACAAGTAGTGCATCGATGCACCCACTTAAATAAAAACATCGAATAGCATCA
* *
8368983 CTGTATCGATGCA-TAGATAGTGCATCGATGCACCC
1 GTGTATCGATGCACAAG-TAGTGCATCGATGCACCC
8369018 GCCAAGGGAT
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
62 2 0.02
63 49 0.59
64 32 0.39
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (63 bp):
GTGTATCGATGCACAAGTAGTGCATCGATGCACCCACTTAAATAAAAACATCGAATAGCATCA
Found at i:8375856 original size:19 final size:19
Alignment explanation
Indices: 8375832--8375884 Score: 106
Period size: 19 Copynumber: 2.8 Consensus size: 19
8375822 GAATGCCATC
8375832 AGTGCATCGATGCACAAGT
1 AGTGCATCGATGCACAAGT
8375851 AGTGCATCGATGCACAAGT
1 AGTGCATCGATGCACAAGT
8375870 AGTGCATCGATGCAC
1 AGTGCATCGATGCAC
8375885 CCCCTTAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (19 bp):
AGTGCATCGATGCACAAGT
Found at i:8376618 original size:23 final size:23
Alignment explanation
Indices: 8376592--8376636 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
8376582 AATCTTATAT
8376592 GGCACTATGGTGCAATTCTACGC
1 GGCACTATGGTGCAATTCTACGC
*
8376615 GGCACTTTGGTGCAATTCTACG
1 GGCACTATGGTGCAATTCTACG
8376637 TTGTAATTCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (23 bp):
GGCACTATGGTGCAATTCTACGC
Found at i:8376649 original size:23 final size:23
Alignment explanation
Indices: 8376600--8376651 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
8376590 ATGGCACTAT
* *
8376600 GGTGCAATTCTACGCGGCACTTT
1 GGTGCAATTCTACGCGGCAATTC
** *
8376623 GGTGCAATTCTACGTTGTAATTC
1 GGTGCAATTCTACGCGGCAATTC
8376646 GGTGCA
1 GGTGCA
8376652 TTTATACGAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.33
Consensus pattern (23 bp):
GGTGCAATTCTACGCGGCAATTC
Found at i:8379037 original size:29 final size:28
Alignment explanation
Indices: 8378971--8379046 Score: 91
Period size: 27 Copynumber: 2.7 Consensus size: 28
8378961 AGAAGATCAT
* *
8378971 AAATTAAAATAAAAGACTAAACTTATGG
1 AAATTAAAATAAAGGACAAAACTTATGG
* *
8378999 -AATTACAATAAAGGACAAAACATTTTGG
1 AAATTAAAATAAAGGACAAAAC-TTATGG
*
8379027 AAATTATAATAAAGGACAAA
1 AAATTAAAATAAAGGACAAA
8379047 TATTTTTATA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 18 0.44
28 5 0.12
29 18 0.44
ACGTcount: A:0.57, C:0.08, G:0.12, T:0.24
Consensus pattern (28 bp):
AAATTAAAATAAAGGACAAAACTTATGG
Found at i:8379059 original size:29 final size:29
Alignment explanation
Indices: 8378999--8379181 Score: 167
Period size: 29 Copynumber: 6.4 Consensus size: 29
8378989 AAACTTATGG
* * **
8378999 AATTACAATAAAGGACAAAACATTTTGGA
1 AATTACAATAAAGTACAAAACTTTTTATA
* *
8379028 AATTATAATAAAGGACAAATA-TTTTTATA
1 AATTACAATAAAGTACAAA-ACTTTTTATA
* * * * *
8379057 AATTTCAGTTACGTACAAAACTATTTATA
1 AATTACAATAAAGTACAAAACTTTTTATA
* * *
8379086 AATTACAACAAAATACAAAACTTTTTTTA
1 AATTACAATAAAGTACAAAACTTTTTATA
**
8379115 AATTACAATAATTTAC--AA-TTTTTATA
1 AATTACAATAAAGTACAAAACTTTTTATA
* *
8379141 AATTATAATAAAGTACAAAACTATTTATA
1 AATTACAATAAAGTACAAAACTTTTTATA
8379170 AATTACAATAAA
1 AATTACAATAAA
8379182 TATTATAATA
Statistics
Matches: 121, Mismatches: 28, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
26 20 0.17
27 2 0.02
28 3 0.02
29 95 0.79
30 1 0.01
ACGTcount: A:0.51, C:0.09, G:0.05, T:0.35
Consensus pattern (29 bp):
AATTACAATAAAGTACAAAACTTTTTATA
Found at i:8379169 original size:22 final size:21
Alignment explanation
Indices: 8379142--8379211 Score: 90
Period size: 22 Copynumber: 3.3 Consensus size: 21
8379132 ATTTTTATAA
8379142 ATTATAATAAAGTACAAAACT
1 ATTATAATAAAGTACAAAACT
* *
8379163 ATT-T-ATAAATTACAATAAAT
1 ATTATAATAAAGTACAA-AACT
8379183 ATTATAATAAAGTACAAAACT
1 ATTATAATAAAGTACAAAACT
8379204 ATTCATAA
1 ATT-ATAA
8379212 ATTATAATAA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
19 10 0.24
20 7 0.17
21 10 0.24
22 14 0.34
ACGTcount: A:0.56, C:0.09, G:0.03, T:0.33
Consensus pattern (21 bp):
ATTATAATAAAGTACAAAACT
Found at i:8379176 original size:19 final size:19
Alignment explanation
Indices: 8379148--8379212 Score: 76
Period size: 19 Copynumber: 3.3 Consensus size: 19
8379138 ATAAATTATA
8379148 ATAAAGTACAAAACTATTT
1 ATAAAGTACAAAACTATTT
* *
8379167 ATAAATTACAATAAATATTAT
1 ATAAAGTACAA-AACTATT-T
*
8379188 AATAAAGTACAAAACTATTC
1 -ATAAAGTACAAAACTATTT
8379208 ATAAA
1 ATAAA
8379213 TTATAATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 15 0.39
20 6 0.16
21 7 0.18
22 10 0.26
ACGTcount: A:0.57, C:0.09, G:0.03, T:0.31
Consensus pattern (19 bp):
ATAAAGTACAAAACTATTT
Found at i:8379189 original size:41 final size:41
Alignment explanation
Indices: 8379142--8379222 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
8379132 ATTTTTATAA
*
8379142 ATTATAATAAAGTACAAAACTATTTATAAATTACAATAAAT
1 ATTATAATAAAGTACAAAACTATTCATAAATTACAATAAAT
*
8379183 ATTATAATAAAGTACAAAACTATTCATAAATTATAATAAA
1 ATTATAATAAAGTACAAAACTATTCATAAATTACAATAAA
8379223 GTACATAACT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.33
Consensus pattern (41 bp):
ATTATAATAAAGTACAAAACTATTCATAAATTACAATAAAT
Found at i:8379221 original size:29 final size:29
Alignment explanation
Indices: 8379183--8379280 Score: 151
Period size: 29 Copynumber: 3.4 Consensus size: 29
8379173 TACAATAAAT
* *
8379183 ATTATAATAAAGTACAAAACTATTCATAA
1 ATTATAATAAAGTACATAACTATTTATAA
8379212 ATTATAATAAAGTACATAACTATTTATAA
1 ATTATAATAAAGTACATAACTATTTATAA
* *
8379241 ATTACAATAAAGTACATAATTATTTATAA
1 ATTATAATAAAGTACATAACTATTTATAA
*
8379270 ATTATGATAAA
1 ATTATAATAAA
8379281 TGTTTGTCCC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 63 1.00
ACGTcount: A:0.53, C:0.07, G:0.04, T:0.36
Consensus pattern (29 bp):
ATTATAATAAAGTACATAACTATTTATAA
Found at i:8382015 original size:6 final size:6
Alignment explanation
Indices: 8382004--8383139 Score: 1416
Period size: 6 Copynumber: 202.5 Consensus size: 6
8381994 TCTAATATTC
8382004 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT A-AAAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382051 ATAAA- ATAAAT ATAAAT AT-AA- ATAAA- ATAAAT ATAAAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382095 AT-AAT AT-AA- ATAAAT ATAAAT ATAAAT AT--AT AT-AAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
*
8382137 ATAAAT AT-AAT ATAAAT AAAATAAT ATAAAT ATAAAT AT-AAT ATAAAT
1 ATAAAT ATAAAT ATAAAT -ATA-AAT ATAAAT ATAAAT ATAAAT ATAAAT
8382185 ATAAAT ATAAAT ATAAAT AT-AA- ATAAAT A-AAAT AT-AA- ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382228 ATAAAT ATAAAT ATAAAT ATAAAT AT-AA- AT-AAT ATAAAT AT-AAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382272 ATAAAT ATAAAT A-AAAT AT-AAT AT-AA- ATAAAT ATAAAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382316 AT-AA- ATAAAT ATAAAT ATAAAT AT-AAT ATAAAT AT-AAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382360 ATAAAT -T-AAT ATAAAT ATAAAT ATAAA- AT-AAT AT-AAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
*
8382403 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATATAAA ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATA-AAT ATAAAT
8382452 ATAAAT AT-AAT ATAAAT AT-AA- ATAAAT AT-AA- ATAAAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382495 ATAAAT ATAAAT ATAAAT AT-AA- ATAAAT ATAAAT ATAAAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382541 ATAAAT ATAAAT ATAAAT AT-AAT -TAAAT ATAAAT ATAAAT A-AAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382586 AT-AAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT AT-AAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382632 A-AATAT AATAAAT AT-AAT ATAAAT ATAAAT AT--A- ATAAAT ATAAAT
1 ATAA-AT -ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382677 ATAAAT ATAAAT A-AATAT ATATAAT AT-AAT ATAAAT ATAAA- ATAAAT
1 ATAAAT ATAAAT ATAA-AT ATA-AAT ATAAAT ATAAAT ATAAAT ATAAAT
*
8382724 AGAAAT AT-AAT AT-AAT ATAAAT ATAAAT ATAAAT AT-AAT AT-AAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382768 AT-AAT A-AAAT AT-AAT AT-AAT ATAAAT AT-AAT ATAAAT ATAAA-
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382810 ATAAAT AT-AAT A-AAAT AT-AA- ATAAAT ATAAAT ATATAAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATA-AAT ATAAAT
8382855 AAATAAA- ATAAA- ATAAAT AT-AA- ATAAAT -TAAAT ATAAAT ATAAAT
1 --ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382900 A-AAAT ATAAAT ATAAAT AT-AAT ATAAAT AT--AT AT-AAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
*
8382943 ATAATAA ATATAAT ATAAAT AT--AT ATAAAT ATAAAT ATAAAT AT-AAT
1 ATAA-AT ATA-AAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
8382990 AT-AAT ATAAAT ATAAAT A-AATAT ATAAAT AT-AA- ATAAAT AT-AAT
1 ATAAAT ATAAAT ATAAAT ATAA-AT ATAAAT ATAAAT ATAAAT ATAAAT
*
8383034 ATAAAT ATAAAT ATAATAA ATATAAT AT-AA- ATAAAT ATAAAT AT-AAT
1 ATAAAT ATAAAT ATAA-AT ATA-AAT ATAAAT ATAAAT ATAAAT ATAAAT
*
8383081 AT-AA- ATAAAT ATAAAT ATAAAT AT-AA- AGAAAT ATAAAT ATAAAT
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT
*
8383125 ATAAAT GTAAAT ATA
1 ATAAAT ATAAAT ATA
8383140 TAGAACACAT
Statistics
Matches: 1021, Mismatches: 14, Indels: 190
0.83 0.01 0.16
Matches are distributed among these distances:
3 2 0.00
4 52 0.05
5 290 0.28
6 624 0.61
7 40 0.04
8 13 0.01
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
ATAAAT
Found at i:8382019 original size:31 final size:31
Alignment explanation
Indices: 8381960--8383139 Score: 1144
Period size: 32 Copynumber: 38.2 Consensus size: 31
8381950 AGAGATCTTT
* **
8381960 AATATACATATACATAAATATATGTATAAA-A
1 AATATA-ATATAAATAAATATAAATATAAATA
* **
8381991 AAGTCTAATATTCATAAATATAAATATAAATATA
1 AA-TATAATATAAATAAATATAAATAT-AA-ATA
8382025 AATATAAATATAAATAAAATATAAATATAAAATA
1 AATAT-AATATAAAT-AAATATAAATAT-AAATA
8382059 AATATAAATATAAATAAA-ATAAATATAAATATA
1 AATAT-AATATAAATAAATATAAATAT-AA-ATA
8382092 AATATAATATAAATAAATATAAATATAAAT-
1 AATATAATATAAATAAATATAAATATAAATA
*
8382122 -ATAT-ATA-ATATAAATATAAATATAATATA
1 AATATAATATAAATAAATATAAATATAA-ATA
8382151 AATA-AA-ATAATATAAATATAAATATAATATA
1 AATATAATATAA-ATAAATATAAATATAA-ATA
8382182 AATATAA-AT--ATAAATATAAATATAAATA
1 AATATAATATAAATAAATATAAATATAAATA
*
8382210 AATAAAATATAAATAAATATAAATATAAATATA
1 AATATAATATAAATAAATATAAATAT-AA-ATA
8382243 AATATAAATATAAAT-AATATAAATATAATATA
1 AATAT-AATATAAATAAATATAAATATAA-ATA
8382275 AATATAA-ATAAAATATAATATAAATA-AATATA
1 AATATAATAT-AAATA-AATATAAATATAA-ATA
8382307 AATATAAATATAAATAAATATAAATATAAATA
1 AATAT-AATATAAATAAATATAAATATAAATA
8382339 TAATATAAATATAATATAAATATAAAT-TAATATA
1 -AATAT-AATATAA-ATAAATATAAATATAA-ATA
8382373 AATATAA-AT--ATAAA-AT-AATATAATATA
1 AATATAATATAAATAAATATAAATATAA-ATA
8382400 AATATAA-AT--ATAAATATAAATATAAATATA
1 AATATAATATAAATAAATATAAATAT-AA-ATA
*
8382430 AATATAA-ATATATAAA-ATAAATATAAATA
1 AATATAATATAAATAAATATAAATATAAATA
8382459 TAATATAAATATAAATAAATATAAATA-AATATA
1 -AATAT-AATATAAATAAATATAAATATAA-ATA
8382492 AATATAA-AT--ATAAATATAAATATAAATA
1 AATATAATATAAATAAATATAAATATAAATA
8382520 AATATAA-AT--ATAAATATAAATATAAATATA
1 AATATAATATAAATAAATATAAATAT-AA-ATA
*
8382550 AATATAAATATAATTAAATATAAATATAAATAA
1 AATAT-AATATAAATAAATATAAATATAAAT-A
8382583 AATATAATATAAATATAAATATAAATATAAAT-
1 AATATAATAT-AA-ATAAATATAAATATAAATA
*
8382615 -ATA-AATATAAATATA-ATAAATAT-AATA
1 AATATAATATAAATAAATATAAATATAAATA
8382642 AATAT-A-AT--ATAAATATAAATAT-AATA
1 AATATAATATAAATAAATATAAATATAAATA
*
8382668 AATATAAATATAAATATAA-ATAAATATATAT-
1 AATAT-AATATAAATA-AATATAAATATAAATA
*
8382699 AATATAATATAAAT--ATA-AAATA-AATAGA
1 AATATAATATAAATAAATATAAATATAA-ATA
8382727 AATATAATATAATATAAATATAAATATAAATA
1 AATATAATATAA-ATAAATATAAATATAAATA
8382759 TAATATAATAT-AATAAA-ATATAATATAATATA
1 -AATATAATATAAATAAATATA-AATATAA-ATA
*
8382791 AATATAATATAAATATAAAATAAATAT-AATAA
1 AATATAATATAAATA-AATATAAATATAAAT-A
8382823 AATATAA-ATAAATATAAATATATAATATAAATA
1 AATATAATAT-AA-ATAAATATA-AATATAAATA
* *
8382856 AATAAAATA-AAATAAATATAAATA-AATTA
1 AATATAATATAAATAAATATAAATATAAATA
8382885 AATATAAATATAAATAAAATATAAATATAAATA
1 AATAT-AATATAAAT-AAATATAAATATAAATA
*
8382918 TAATATAA-ATATATATAATATAAATAT-AATA
1 -AATATAATATAAATA-AATATAAATATAAATA
*
8382949 AATATAATATAAATATATATAAATATAAATATA
1 AATATAATATAAATAAATATAAATAT-AA-ATA
8382982 AATATAATATAATATAAATAT-AA-ATAAATA
1 AATATAATATAA-ATAAATATAAATATAAATA
*
8383012 TATA-AATATAAATAAATAT-AATATAAATA
1 AATATAATATAAATAAATATAAATATAAATA
8383041 TAA-AT-ATAATAAATATAATATAAATA-AATATA
1 -AATATAAT-ATAAATA-AATATAAATATAA-ATA
8383073 AATATAATATAAATAAATATAAATATAAAT-
1 AATATAATATAAATAAATATAAATATAAATA
*
8383103 -ATA-AAGA-AATATAAATATAAATATAAATGTA
1 AATATAATATAA-ATAAATATAAATATAAA--TA
8383134 AATATA
1 AATATA
8383140 TAGAACACAT
Statistics
Matches: 1008, Mismatches: 32, Indels: 216
0.80 0.03 0.17
Matches are distributed among these distances:
25 4 0.00
26 24 0.02
27 59 0.06
28 112 0.11
29 69 0.07
30 96 0.10
31 176 0.17
32 190 0.19
33 160 0.16
34 103 0.10
35 15 0.01
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.33
Consensus pattern (31 bp):
AATATAATATAAATAAATATAAATATAAATA
Found at i:8382041 original size:22 final size:22
Alignment explanation
Indices: 8382004--8383139 Score: 1291
Period size: 22 Copynumber: 50.9 Consensus size: 22
8381994 TCTAATATTC
8382004 ATAAATATAAATATAAATATAAAT
1 ATAAATAT-AA-ATAAATATAAAT
8382028 ATAAATATAAATAAAATATAAAT
1 ATAAATATAAAT-AAATATAAAT
8382051 ATAAA-ATAAATATAAATATAAAT
1 ATAAATAT-AA-ATAAATATAAAT
8382074 A-AAATA-AATATAAATATAAAT
1 ATAAATATAA-ATAAATATAAAT
8382095 AT-AATATAAATAAATATAAAT
1 ATAAATATAAATAAATATAAAT
*
8382116 ATAAATATATAT-AATATAAAT
1 ATAAATATAAATAAATATAAAT
*
8382137 ATAAATATAATATAAATAAAATAAT
1 ATAAATATAA-ATAAAT-ATA-AAT
8382162 ATAAATATAAATATAATATAAAT
1 ATAAATATAAATA-AATATAAAT
8382185 ATAAATATAAATATAAATATAAAT
1 ATAAATAT-AA-ATAAATATAAAT
8382209 AAATAAAATATAAATAAATATAAAT
1 --AT-AAATATAAATAAATATAAAT
8382234 ATAAATATAAATATAAATATAAATAAT
1 ATAAATAT-AA-ATAAATAT--A-AAT
8382261 ATAAATATAATATAAATATAAAT
1 ATAAATATAA-ATAAATATAAAT
8382284 A-AAATAT-AATATAA-ATAAAT
1 ATAAATATAAATA-AATATAAAT
8382304 ATAAATATAAATATAA-ATAAAT
1 ATAAATATAAATA-AATATAAAT
8382326 ATAAATATAAATATAATATAAAT
1 ATAAATATAAATA-AATATAAAT
*
8382349 AT-AATATAAATATAA-ATTAAT
1 ATAAATATAAATA-AATATAAAT
*
8382370 ATAAATATAAATATAAAAT-AAT
1 ATAAATATAAATA-AATATAAAT
8382392 AT-AATATAAATATAAATATAAAT
1 ATAAATAT-AA-ATAAATATAAAT
8382415 ATAAATATAAATATAAATATAAAT
1 ATAAATAT-AA-ATAAATATAAAT
*
8382439 ATATAAAATAAATATAA-ATATAAT
1 ATA-AATATAAATA-AATATA-AAT
8382463 ATAAATATAAATAAATAT-AA-
1 ATAAATATAAATAAATATAAAT
8382483 ATAAATATAAATATAAATATAAAT
1 ATAAATAT-AA-ATAAATATAAAT
8382507 ATAAATATAAATAAATATAAAT
1 ATAAATATAAATAAATATAAAT
8382529 ATAAATATAAATATAAATATAAAT
1 ATAAATAT-AA-ATAAATATAAAT
*
8382553 ATAAATATAATTAAATATAAAT
1 ATAAATATAAATAAATATAAAT
8382575 ATAAATA-AAATATAATATAAAT
1 ATAAATATAAATA-AATATAAAT
8382597 ATAAATATAAATATAAATATAAAT
1 ATAAATAT-AA-ATAAATATAAAT
8382621 ATAAATAT-AATAAATAT--A-
1 ATAAATATAAATAAATATAAAT
8382639 ATAAATATAATATAAATATAAAT
1 ATAAATATAA-ATAAATATAAAT
8382662 AT-AATA-AATATAAATATAAAT
1 ATAAATATAA-ATAAATATAAAT
*
8382683 ATAAATA-AATATATATAATATAAT
1 ATAAATATAA-ATAAAT-ATA-AAT
*
8382707 ATAAATATAAAATAAATAGAAAT
1 ATAAATAT-AAATAAATATAAAT
8382730 AT-AATATAATATAAATATAAAT
1 ATAAATATAA-ATAAATATAAAT
8382752 ATAAATATAATATAATATAATAAA-
1 ATAAATATAA-ATAA-AT-ATAAAT
8382776 ATATAATATAATATAAATAT-AAT
1 ATA-AATATAA-ATAAATATAAAT
8382799 ATAAATATAAAATAAATAT-AAT
1 ATAAATAT-AAATAAATATAAAT
8382821 A-AAATATAAATAAATATAAAT
1 ATAAATATAAATAAATATAAAT
8382842 ATATAATATAAATAAATA-AAAT
1 ATA-AATATAAATAAATATAAAT
8382864 AAAATAAATATAAATAAAT-TAAAT
1 ---ATAAATATAAATAAATATAAAT
8382888 ATAAATATAAATAAAATATAAAT
1 ATAAATATAAAT-AAATATAAAT
8382911 ATAAATATAATATAAATAT--AT
1 ATAAATATAA-ATAAATATAAAT
*
8382932 AT-AATATAAATATA-ATAAAT
1 ATAAATATAAATAAATATAAAT
*
8382952 AT-AATATAAATATATATAAAT
1 ATAAATATAAATAAATATAAAT
8382973 ATAAATATAAATATAATAT-AAT
1 ATAAATATAAATA-AATATAAAT
8382995 ATAAATATAAATAAATAT----
1 ATAAATATAAATAAATATAAAT
8383013 ATAAATATAAATAAATAT-AAT
1 ATAAATATAAATAAATATAAAT
*
8383034 ATAAATATAAATATA-ATAAAT
1 ATAAATATAAATAAATATAAAT
8383055 AT-AATATAAATAAATATAAAT
1 ATAAATATAAATAAATATAAAT
8383076 AT-AATATAAATAAATATAAAT
1 ATAAATATAAATAAATATAAAT
*
8383097 ATAAATATAAAGAAATATAAAT
1 ATAAATATAAATAAATATAAAT
8383119 ATAAATATAAATGTAAATATA
1 ATAAATATAAA--TAAATATA
8383140 TAGAACACAT
Statistics
Matches: 1006, Mismatches: 20, Indels: 172
0.84 0.02 0.14
Matches are distributed among these distances:
18 28 0.03
19 6 0.01
20 72 0.07
21 195 0.19
22 280 0.28
23 164 0.16
24 163 0.16
25 63 0.06
26 18 0.02
27 17 0.02
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (22 bp):
ATAAATATAAATAAATATAAAT
Found at i:8389302 original size:24 final size:23
Alignment explanation
Indices: 8389238--8389302 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
8389228 TAAATGATTT
* *
8389238 GAAATTATGACATAAACTTGTTAT
1 GAAATT-TGACATAAATTTGTTAG
* *
8389262 GATATCTTGATATAAATTTGTTAG
1 GAAAT-TTGACATAAATTTGTTAG
8389286 GAAATTTGACATGAAAT
1 GAAATTTGACAT-AAAT
8389303 GATATATAGA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
23 6 0.18
24 26 0.79
25 1 0.03
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.38
Consensus pattern (23 bp):
GAAATTTGACATAAATTTGTTAG
Found at i:8389659 original size:23 final size:24
Alignment explanation
Indices: 8389625--8389728 Score: 113
Period size: 23 Copynumber: 4.4 Consensus size: 24
8389615 GAGTCGAGGG
*
8389625 TTCTACGCGGTCCTTCGGGACAAA
1 TTCTACGTGGTCCTTCGGGACAAA
* *
8389649 -TCTATGTGGTCCTTCAGGAC-AA
1 TTCTACGTGGTCCTTCGGGACAAA
* *
8389671 TTCTACGTGGTCATTCGAGACAAA
1 TTCTACGTGGTCCTTCGGGACAAA
* * * *
8389695 TTCTATGCGGACCTTCGGGAAAAA
1 TTCTACGTGGTCCTTCGGGACAAA
8389719 TTCTACGTGG
1 TTCTACGTGG
8389729 CACTTCGATG
Statistics
Matches: 63, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
22 2 0.03
23 33 0.52
24 28 0.44
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (24 bp):
TTCTACGTGGTCCTTCGGGACAAA
Found at i:8389694 original size:46 final size:48
Alignment explanation
Indices: 8389625--8389749 Score: 132
Period size: 48 Copynumber: 2.6 Consensus size: 48
8389615 GAGTCGAGGG
* * * * * *
8389625 TTCTACGCGGTCCTTCGGGACAAA-TCTATGTGGTCCTTCAGG-ACAA
1 TTCTACGTGGTCATTCGAGACAAATTCTATGCGGACCTTCAGGAAAAA
*
8389671 TTCTACGTGGTCATTCGAGACAAATTCTATGCGGACCTTCGGGAAAAA
1 TTCTACGTGGTCATTCGAGACAAATTCTATGCGGACCTTCAGGAAAAA
*
8389719 TTCTACGTGG-CACTTCGATG-CAAATTATATG
1 TTCTACGTGGTCA-TTCGA-GACAAATTCTATG
8389750 AGAAGTGGTG
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
46 21 0.31
47 17 0.25
48 28 0.42
49 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (48 bp):
TTCTACGTGGTCATTCGAGACAAATTCTATGCGGACCTTCAGGAAAAA
Found at i:8389734 original size:24 final size:24
Alignment explanation
Indices: 8389669--8389736 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
8389659 CCTTCAGGAC
*
8389669 AATTCTACGTGGTCA-TTCGAGACA
1 AATTCTACGTGG-CACTTCGAGAAA
* * *
8389693 AATTCTATGCGG-ACCTTCGGGAAA
1 AATTCTACGTGGCA-CTTCGAGAAA
8389717 AATTCTACGTGGCACTTCGA
1 AATTCTACGTGGCACTTCGA
8389737 TGCAAATTAT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
22 1 0.03
24 32 0.94
25 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AATTCTACGTGGCACTTCGAGAAA
Found at i:8395230 original size:24 final size:24
Alignment explanation
Indices: 8395177--8395249 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
8395167 GAGTCGAGGG
* *
8395177 TTCTACGTGGTTCTTTGGGAC-AA
1 TTCTACGTGGTCCTTCGGGACAAA
8395200 TTCTACGTGGTCCTTCGGGACAAA
1 TTCTACGTGGTCCTTCGGGACAAA
*
8395224 TTCTACGCGGTCCTTCGGGACAAA
1 TTCTACGTGGTCCTTCGGGACAAA
8395248 TT
1 TT
8395250 ATAAGGGAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
23 19 0.41
24 27 0.59
ACGTcount: A:0.19, C:0.23, G:0.25, T:0.33
Consensus pattern (24 bp):
TTCTACGTGGTCCTTCGGGACAAA
Found at i:8396918 original size:20 final size:20
Alignment explanation
Indices: 8396893--8396934 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
8396883 CTAAAAGCCT
*
8396893 ATTTAGGATCATATAGATGC
1 ATTTAGGAGCATATAGATGC
*
8396913 ATTTAGGAGCATATAGTTGC
1 ATTTAGGAGCATATAGATGC
8396933 AT
1 AT
8396935 GTGGTGAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (20 bp):
ATTTAGGAGCATATAGATGC
Found at i:8405447 original size:20 final size:20
Alignment explanation
Indices: 8405422--8405464 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
8405412 TCTAAAAGCC
8405422 CATTTAGGA-TCATATAGATG
1 CATTTAGGAGT-ATATAGATG
*
8405442 CATTTAGGAGTATATAGTTG
1 CATTTAGGAGTATATAGATG
8405462 CAT
1 CAT
8405465 GTGGTGAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.95
21 1 0.05
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (20 bp):
CATTTAGGAGTATATAGATG
Found at i:8407630 original size:31 final size:31
Alignment explanation
Indices: 8407543--8407669 Score: 123
Period size: 31 Copynumber: 4.1 Consensus size: 31
8407533 AGAGTCGAGG
*
8407543 GTATACCTATGTTCTACGGAACATATGGACA
1 GTATACCTATGTTCTAAGGAACATATGGACA
* ***
8407574 GAATTACCTATG-TCTTTCGAGACATATGGACA
1 GTA-TACCTATGTTCTAAGGA-ACATATGGACA
8407606 GTATACCTATGTTCTAAGGAACATATGGACA
1 GTATACCTATGTTCTAAGGAACATATGGACA
* * * * *
8407637 ATTTACCTAGGTTCTTCA-GAACCTATGGACA
1 GTATACCTATGTTC-TAAGGAACATATGGACA
8407668 GT
1 GT
8407670 TGCCAAGGAT
Statistics
Matches: 78, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
31 50 0.64
32 28 0.36
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (31 bp):
GTATACCTATGTTCTAAGGAACATATGGACA
Found at i:8407711 original size:30 final size:30
Alignment explanation
Indices: 8407657--8407728 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 30
8407647 GTTCTTCAGA
* * *
8407657 ACCTATGGACAGTTGCCAAGGATCTTTATG
1 ACCTCTGGATAGTTACCAAGGATCTTTATG
*
8407687 ACCTCTGGATAGTTACCGAGGATCTTTATG
1 ACCTCTGGATAGTTACCAAGGATCTTTATG
8407717 ACCTCTGGATAG
1 ACCTCTGGATAG
8407729 GTCCTTCGGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.31
Consensus pattern (30 bp):
ACCTCTGGATAGTTACCAAGGATCTTTATG
Found at i:8415481 original size:2 final size:2
Alignment explanation
Indices: 8415474--8415514 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
8415464 CTTAATTAAT
8415474 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8415515 TTACACTGCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8422270 original size:22 final size:22
Alignment explanation
Indices: 8422243--8422302 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
8422233 TGTGTGTGTA
* * *
8422243 CAGTGCTAATGCACTTCCCTAT
1 CAGTGCTAAGGCACTTCACTAC
* *
8422265 CAGTGCCAAGGCACTTCAGTAC
1 CAGTGCTAAGGCACTTCACTAC
*
8422287 CAGTGCTAAGACACTT
1 CAGTGCTAAGGCACTT
8422303 TAGCTATATG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (22 bp):
CAGTGCTAAGGCACTTCACTAC
Found at i:8423486 original size:2 final size:2
Alignment explanation
Indices: 8423481--8423533 Score: 88
Period size: 2 Copynumber: 26.5 Consensus size: 2
8423471 GATCGTCTAA
* *
8423481 TG TG TG TG TA TG TG TG TG TG TG TG TG TG TT TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
8423523 TG TG TG TG TG T
1 TG TG TG TG TG T
8423534 AGTGCTAATG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.02, C:0.00, G:0.45, T:0.53
Consensus pattern (2 bp):
TG
Found at i:8427787 original size:2 final size:2
Alignment explanation
Indices: 8427780--8427809 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8427770 TGATTTTTAA
8427780 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8427810 TTTTATTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8432573 original size:17 final size:17
Alignment explanation
Indices: 8432553--8432604 Score: 86
Period size: 17 Copynumber: 3.1 Consensus size: 17
8432543 AACTCATTAA
8432553 AAATTTGAATCAAATTC
1 AAATTTGAATCAAATTC
* *
8432570 AAATTCGAATCAAATTT
1 AAATTTGAATCAAATTC
8432587 AAATTTGAATCAAATTC
1 AAATTTGAATCAAATTC
8432604 A
1 A
8432605 TTCAATTTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.35
Consensus pattern (17 bp):
AAATTTGAATCAAATTC
Found at i:8433481 original size:12 final size:12
Alignment explanation
Indices: 8433464--8433525 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
8433454 TTCAAAGAGG
8433464 TTTTATATTTAA
1 TTTTATATTTAA
8433476 TTTTATA-TT-A
1 TTTTATATTTAA
* *
8433486 TATTATATTTGA
1 TTTTATATTTAA
8433498 TTTTA-ATTTTAA
1 TTTTATA-TTTAA
*
8433510 TATTA-ATATTAA
1 TTTTATAT-TTAA
8433522 TTTT
1 TTTT
8433526 TAAATAAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
10 7 0.17
11 6 0.15
12 28 0.68
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.65
Consensus pattern (12 bp):
TTTTATATTTAA
Found at i:8433587 original size:40 final size:37
Alignment explanation
Indices: 8433537--8433621 Score: 109
Period size: 38 Copynumber: 2.2 Consensus size: 37
8433527 AAATAAATTA
*
8433537 AATATTAATTTTTTAATATTATATTATAGATATTAA-TTTT
1 AATATTAATTTTTTAA-A-TAAATTA-A-ATATTAATTTTT
8433577 AATATTAATTTTTTAAATAAATTAAATATTAATTTTTT
1 AATATTAATTTTTTAAATAAATTAAATATTAA-TTTTT
8433615 AATATTA
1 AATATTA
8433622 TATTATAGAT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
36 7 0.17
37 1 0.02
38 17 0.40
39 1 0.02
40 16 0.38
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (37 bp):
AATATTAATTTTTTAAATAAATTAAATATTAATTTTT
Found at i:8433615 original size:64 final size:64
Alignment explanation
Indices: 8433505--8433642 Score: 251
Period size: 64 Copynumber: 2.2 Consensus size: 64
8433495 TGATTTTAAT
*
8433505 TTTAATATTAATATTAATTTTTAAATAAATTAAATATTAATTTTTTAATATTATATTATAGATA
1 TTTAATTTTAATATTAATTTTTAAATAAATTAAATATTAATTTTTTAATATTATATTATAGATA
8433569 -TTAATTTTAATATTAATTTTTTAAATAAATTAAATATTAATTTTTTAATATTATATTATAGATA
1 TTTAATTTTAATATTAA-TTTTTAAATAAATTAAATATTAATTTTTTAATATTATATTATAGATA
8433633 TTTAATTTTA
1 TTTAATTTTA
8433643 TATCATATAA
Statistics
Matches: 71, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
63 15 0.21
64 47 0.66
65 9 0.13
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (64 bp):
TTTAATTTTAATATTAATTTTTAAATAAATTAAATATTAATTTTTTAATATTATATTATAGATA
Found at i:8434199 original size:31 final size:31
Alignment explanation
Indices: 8434162--8434221 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
8434152 TAGTTGTATG
* * *
8434162 AATTATTTAAATTTCAGTATTGTAAAACTAA
1 AATTATTTAAATCTAAGTATTGCAAAACTAA
8434193 AATTATTTAAATCTAAGTATTGCAAAACT
1 AATTATTTAAATCTAAGTATTGCAAAACT
8434222 CTTTTAAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.45, C:0.08, G:0.07, T:0.40
Consensus pattern (31 bp):
AATTATTTAAATCTAAGTATTGCAAAACTAA
Found at i:8436870 original size:14 final size:15
Alignment explanation
Indices: 8436851--8436881 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
8436841 ATTTGATTTG
8436851 AAAATTAT-AAGTTT
1 AAAATTATCAAGTTT
8436865 AAAATTATCAAGTTT
1 AAAATTATCAAGTTT
8436880 AA
1 AA
8436882 TTCAACTCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (15 bp):
AAAATTATCAAGTTT
Found at i:8440834 original size:5 final size:5
Alignment explanation
Indices: 8440826--8440850 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8440816 TTATTATATT
8440826 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
8440851 CTATGTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:8447640 original size:65 final size:64
Alignment explanation
Indices: 8447571--8447756 Score: 218
Period size: 65 Copynumber: 2.9 Consensus size: 64
8447561 AATTAAATTG
* * *
8447571 AACATCGAATGCATTTCATACATCGATGCACATACCATGCACCGATGCACTGAGGAT-TTTATGA
1 AACATCGAATGCATTTGATGCATCGATGCACATACCATGCACCGATGCACTAAGGATATTT-TG-
8447635 A
64 A
* ** *
8447636 AACATCGAATGCATTTGATGCATCGATGCACCA-ACCATGCATCGATGCACTCTGGCTATTTTGA
1 AACATCGAATGCATTTGATGCATCGATGCA-CATACCATGCACCGATGCACTAAGGATATTTTGA
* *
8447700 AACATCGAATGCACTTGATGCATCGATGCAC-T-CTTAGTGCACCGATGCACTAAGGAT
1 AACATCGAATGCATTTGATGCATCGATGCACATAC-CA-TGCACCGATGCACTAAGGAT
8447757 CCAACGGTCA
Statistics
Matches: 104, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
62 1 0.01
63 2 0.02
64 46 0.44
65 50 0.48
66 5 0.05
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (64 bp):
AACATCGAATGCATTTGATGCATCGATGCACATACCATGCACCGATGCACTAAGGATATTTTGA
Found at i:8447730 original size:17 final size:19
Alignment explanation
Indices: 8447702--8447750 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
8447692 TATTTTGAAA
8447702 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
8447720 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
8447739 CACCGATGCACT
1 CATCGATGCACT
8447751 AAGGATCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:8447745 original size:129 final size:130
Alignment explanation
Indices: 8447521--8447756 Score: 302
Period size: 129 Copynumber: 1.8 Consensus size: 130
8447511 TTTTTCAGAG
* *
8447521 TGATGCACCGATGCACCAATCCATGAATCGATGCACCATGAATTAAATTGAACATCGAATGCATT
1 TGATGCACCGATGCACCAATCCATGAATCGATGCACCATGAACTAAATTGAACATCGAATGCACT
*
8447586 TCATACATCGATGCACATACCATGCACCGATGCACTGAGGATTTTATGAAAACATCGAATGCATT
66 TCATACATCGATGCACATACCATGCACCGATGCACTAAGGATTTTATGAAAACATCGAATGCATT
* * * **
8447651 TGATGCATCGATGCACCAA-CCATGCATCGATGCACTC-TG-GCTATTTTGAAACATCGAATGCA
1 TGATGCACCGATGCACCAATCCATGAATCGATGCAC-CATGAACTAAATTG-AACATCGAATGCA
* * *
8447713 CTTGATGCATCGATGCAC-T-CTTAGTGCACCGATGCACTAAGGAT
64 CTTCATACATCGATGCACATAC-CA-TGCACCGATGCACTAAGGAT
8447757 CCAACGGTCA
Statistics
Matches: 91, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
127 1 0.01
128 7 0.08
129 64 0.70
130 19 0.21
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (130 bp):
TGATGCACCGATGCACCAATCCATGAATCGATGCACCATGAACTAAATTGAACATCGAATGCACT
TCATACATCGATGCACATACCATGCACCGATGCACTAAGGATTTTATGAAAACATCGAATGCATT
Found at i:8453526 original size:44 final size:44
Alignment explanation
Indices: 8453458--8453554 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 44
8453448 TTGTGCTTAA
* *
8453458 TGCATCGATACACTTAACAGTGCACCGATGCATC-CCTTTGAATG
1 TGCATCGATACACTCAACAGTGCACCGATGCA-CGCCCTTGAATG
*
8453502 TGCATCGATACA-TCAACTGATGCACCGATGCACGCCCTTGAATG
1 TGCATCGATACACTCAACAG-TGCACCGATGCACGCCCTTGAATG
8453546 TGCATCGAT
1 TGCATCGAT
8453555 GCACAAGAGC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
43 6 0.12
44 42 0.88
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.26
Consensus pattern (44 bp):
TGCATCGATACACTCAACAGTGCACCGATGCACGCCCTTGAATG
Found at i:8455131 original size:21 final size:21
Alignment explanation
Indices: 8455089--8455132 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
8455079 ACTCCGGGAG
* *
8455089 CTAGTTCCTCACGAGCTGCTC
1 CTAGCTCCTCACGAGCTCCTC
* *
8455110 CTAGCTCCTCTCGTGCTCCTC
1 CTAGCTCCTCACGAGCTCCTC
8455131 CT
1 CT
8455133 CCTCCTCCGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.09, C:0.43, G:0.16, T:0.32
Consensus pattern (21 bp):
CTAGCTCCTCACGAGCTCCTC
Found at i:8456937 original size:18 final size:20
Alignment explanation
Indices: 8456886--8456957 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 20
8456876 ATTAAAAAAT
*
8456886 TAATAT-TTA-AATTAT-TA
1 TAATATATTATAATTATAGA
8456903 TATATATATTATAATTA-ATGA
1 TA-ATATATTATAATTATA-GA
8456924 TAATATA-TAT-ATTATAGA
1 TAATATATTATAATTATAGA
8456942 TAATAT-TTA-AATTATA
1 TAATATATTATAATTATA
8456958 ATCATAAGAT
Statistics
Matches: 46, Mismatches: 1, Indels: 15
0.74 0.02 0.24
Matches are distributed among these distances:
17 2 0.04
18 24 0.52
19 7 0.15
20 10 0.22
21 3 0.07
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TAATATATTATAATTATAGA
Found at i:8458225 original size:19 final size:19
Alignment explanation
Indices: 8458180--8458230 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
8458170 TATAAAAAAT
8458180 AAATAAT-ATT-TTTATTA
1 AAATAATAATTATTTATTA
** *
8458197 AAATCTTAATTATTTTTTA
1 AAATAATAATTATTTATTA
8458216 AAATAATAA-TATTTA
1 AAATAATAATTATTTA
8458231 GATAATAATA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
17 5 0.19
18 8 0.31
19 13 0.50
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
AAATAATAATTATTTATTA
Found at i:8462188 original size:29 final size:29
Alignment explanation
Indices: 8462135--8462191 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
8462125 TTATTTTATT
* *
8462135 AAATATTATGTAATAAAAATATTATGTTC
1 AAATATTATATAATAAAAAGATTATGTTC
* *
8462164 AAATATTATATAATATAAAGGTTATGTT
1 AAATATTATATAATAAAAAGATTATGTT
8462192 ATTTTATTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (29 bp):
AAATATTATATAATAAAAAGATTATGTTC
Found at i:8465529 original size:35 final size:35
Alignment explanation
Indices: 8465488--8465558 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
8465478 TGTTCAAAAA
* *
8465488 TCCAAAACACTTTAATTACATTTTAAACCCCAAAT
1 TCCAAAACACTTCAATTACATTCTAAACCCCAAAT
* *
8465523 TCCAAAATACTTCAATTACATTCTAAACCCTAAAT
1 TCCAAAACACTTCAATTACATTCTAAACCCCAAAT
8465558 T
1 T
8465559 GAATTATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.32
Consensus pattern (35 bp):
TCCAAAACACTTCAATTACATTCTAAACCCCAAAT
Found at i:8470670 original size:56 final size:55
Alignment explanation
Indices: 8470580--8470689 Score: 202
Period size: 56 Copynumber: 2.0 Consensus size: 55
8470570 TGTGCAACTT
*
8470580 ATTACTTGAAAAGGTTTCAGATGAGTAAAATGATAGTTGAATCTTTATAAATATG
1 ATTACTTGAAAAGGTATCAGATGAGTAAAATGATAGTTGAATCTTTATAAATATG
8470635 ATTATCTTGAAAAGGTATCAGATGAGTAAAATGATAGTTGAATCTTTATAAATAT
1 ATTA-CTTGAAAAGGTATCAGATGAGTAAAATGATAGTTGAATCTTTATAAATAT
8470690 TATCGATGAC
Statistics
Matches: 53, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
55 4 0.08
56 49 0.92
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.36
Consensus pattern (55 bp):
ATTACTTGAAAAGGTATCAGATGAGTAAAATGATAGTTGAATCTTTATAAATATG
Found at i:8473342 original size:21 final size:21
Alignment explanation
Indices: 8473318--8473359 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
8473308 AGTTTATTTT
8473318 TAAACTTTATTTCAATTATCG
1 TAAACTTTATTTCAATTATCG
*
8473339 TAAACTTTGTTTCAATTATCG
1 TAAACTTTATTTCAATTATCG
8473360 AACTTGAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.14, G:0.07, T:0.48
Consensus pattern (21 bp):
TAAACTTTATTTCAATTATCG
Found at i:8475825 original size:22 final size:22
Alignment explanation
Indices: 8475799--8475840 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
8475789 GAAATGGAGT
*
8475799 GAAGAGAAG-AGAAAGGAAAGGA
1 GAAGA-AAGAAGAAAAGAAAGGA
8475821 GAAGAAAGAAGAAAAGAAAG
1 GAAGAAAGAAGAAAAGAAAG
8475841 AACACATTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (22 bp):
GAAGAAAGAAGAAAAGAAAGGA
Found at i:8476055 original size:3 final size:3
Alignment explanation
Indices: 8476047--8476085 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
8476037 ATTTATGGAG
8476047 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8476086 AGATAATGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8477327 original size:35 final size:35
Alignment explanation
Indices: 8477249--8477327 Score: 90
Period size: 35 Copynumber: 2.2 Consensus size: 35
8477239 GCCTGAAGGT
* * *
8477249 AATATTTTTATTTGGTTTTGATTTAAAATATTAATT
1 AATA-TTTTATTTGATTTTGATTAAAAATATTAATG
8477285 AGA-ATTTTATTT-ATTTTGATTAAAAATAATTAATG
1 A-ATATTTTATTTGATTTTGATTAAAAAT-ATTAATG
8477320 AATATTTT
1 AATATTTT
8477328 TTAATTGACT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
34 14 0.38
35 20 0.54
36 2 0.05
37 1 0.03
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (35 bp):
AATATTTTATTTGATTTTGATTAAAAATATTAATG
Found at i:8477973 original size:19 final size:18
Alignment explanation
Indices: 8477949--8477992 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
8477939 TTAACATATT
* *
8477949 AAATAAATAATTTTAGATA
1 AAATAAAAAAATTTA-ATA
8477968 AAATAAAAAAAATTTAATA
1 AAAT-AAAAAAATTTAATA
8477987 AAATAA
1 AAATAA
8477993 TTTCACATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 2 0.09
19 11 0.50
20 9 0.41
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (18 bp):
AAATAAAAAAATTTAATA
Found at i:8484641 original size:17 final size:17
Alignment explanation
Indices: 8484619--8484665 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
8484609 ACAAAAAAAC
8484619 TTGCATAATACATGTCA
1 TTGCATAATACATGTCA
*
8484636 TTGCATCATACA--TCA
1 TTGCATAATACATGTCA
*
8484651 TTTCATACATACATG
1 TTGCATA-ATACATG
8484666 ATACATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
15 8 0.33
16 5 0.21
17 11 0.46
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (17 bp):
TTGCATAATACATGTCA
Found at i:8484877 original size:62 final size:61
Alignment explanation
Indices: 8484775--8484958 Score: 280
Period size: 62 Copynumber: 3.0 Consensus size: 61
8484765 TCTTGTTTCC
* * *
8484775 TAGAATCAATTTTTGACTTCCTCGTGAAGAGAAGTCAACCTTTATTATTTCTGACTCCTCAT
1 TAGAGTCAA-TTTTGACTTCCTCGTGAAGAGAAGTCAACCTTTATTATTTCTGACTCCCCAG
*
8484837 TAGAGTCAATCTTTGACTTCCTCGTGAAGAGAATTCAACCTTTATTA-TTCTTGACTCCCCAG
1 TAGAGTCAAT-TTTGACTTCCTCGTGAAGAGAAGTCAACCTTTATTATTTC-TGACTCCCCAG
*
8484899 TAGAGTCAAATTTTGACTTCCTCGTGAAGAGAAGTCAACCTTTATTATTTCTAACTCCCC
1 TAGAGTC-AATTTTGACTTCCTCGTGAAGAGAAGTCAACCTTTATTATTTCTGACTCCCC
8484959 TGAGGAACTA
Statistics
Matches: 112, Mismatches: 6, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
61 4 0.04
62 102 0.91
63 6 0.05
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (61 bp):
TAGAGTCAATTTTGACTTCCTCGTGAAGAGAAGTCAACCTTTATTATTTCTGACTCCCCAG
Found at i:8485183 original size:36 final size:36
Alignment explanation
Indices: 8485136--8485735 Score: 958
Period size: 36 Copynumber: 16.8 Consensus size: 36
8485126 TTTTATTTCA
8485136 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
8485172 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
* *
8485208 ATCTTAG-CTTC-C--AAGAGTAGTGAAGCAAATCC
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
*
8485240 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGGC
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
* *
8485276 ATCTTAGCCTCCACGAAAGAGTAGTGAAGCAAAGCT
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
8485312 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
8485348 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
* * *
8485384 ATCTTAGCCTCCACGGAAGAGTGGGGAAGCAAAGCA
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
* *
8485420 ATCTTAGCCTTCACGGAAGAGTAGTGAAGCAAAGCA
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
* *
8485456 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAATCA
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
* *
8485492 ATCTTAGCCTTCACGGAAGAGTAATGAAGCAAAG-C
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
8485527 AGTCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
1 A-TCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
*
8485564 ATTTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
8485600 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
*
8485636 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAATCC
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
* *
8485672 ATCTTAGCCTTCACTGAAGAGTAGTGAAGCAAAGCC
1 ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
* * * *
8485708 ATCATATCCTTCATGGAAGAGTAGTGAA
1 ATCTTAGCCTCCACGGAAGAGTAGTGAA
8485736 ACAAGAACAA
Statistics
Matches: 524, Mismatches: 34, Indels: 12
0.92 0.06 0.02
Matches are distributed among these distances:
32 26 0.05
33 3 0.01
34 2 0.00
35 4 0.01
36 487 0.93
37 2 0.00
ACGTcount: A:0.34, C:0.23, G:0.24, T:0.19
Consensus pattern (36 bp):
ATCTTAGCCTCCACGGAAGAGTAGTGAAGCAAAGCC
Found at i:8493439 original size:22 final size:23
Alignment explanation
Indices: 8493411--8493466 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 23
8493401 TTTAAAATTA
8493411 TTTTTAGG-ATATATCTCTT-ATT-
1 TTTTTAGGAAT-TATCT-TTCATTG
8493433 TTTTTAGGAATTATCTTTCATTG
1 TTTTTAGGAATTATCTTTCATTG
8493456 TTTTTA-GAATT
1 TTTTTAGGAATT
8493467 TTGAAAGGCT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
21 2 0.06
22 21 0.68
23 8 0.26
ACGTcount: A:0.23, C:0.07, G:0.11, T:0.59
Consensus pattern (23 bp):
TTTTTAGGAATTATCTTTCATTG
Found at i:8493603 original size:19 final size:20
Alignment explanation
Indices: 8493546--8493603 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 20
8493536 TTTGGTTTTA
8493546 TAAAGTTCTTATTTTCTTTATTT
1 TAAAGTT-TTA-TTT-TTTATTT
**
8493569 TCAAAGTTTTCGTTTTTATTT
1 T-AAAGTTTTATTTTTTATTT
8493590 T-AAGTTTTATTTTT
1 TAAAGTTTTATTTTT
8493604 AAACATGCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
19 11 0.37
21 8 0.27
22 2 0.07
23 3 0.10
24 6 0.20
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (20 bp):
TAAAGTTTTATTTTTTATTT
Found at i:8494803 original size:20 final size:20
Alignment explanation
Indices: 8494780--8494847 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
8494770 TAAATTATAT
8494780 TAATTATTTATTAAAAATAA
1 TAATTATTTATTAAAAATAA
* * ** *
8494800 TAATAAATTATTAATTATAT
1 TAATTATTTATTAAAAATAA
8494820 TAATTATTTATTAAATAATAA
1 TAATTATTTATTAAA-AATAA
8494841 T-ATTATT
1 TAATTATT
8494848 CAAATATTAA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
20 33 0.89
21 4 0.11
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTATTTATTAAAAATAA
Found at i:8494810 original size:40 final size:41
Alignment explanation
Indices: 8494766--8494842 Score: 138
Period size: 40 Copynumber: 1.9 Consensus size: 41
8494756 TAACAAAATT
8494766 ATTATAAATTATATTAATTATTTATTAAA-AATAATAATAA
1 ATTATAAATTATATTAATTATTTATTAAATAATAATAATAA
*
8494806 ATTATTAATTATATTAATTATTTATTAAATAATAATA
1 ATTATAAATTATATTAATTATTTATTAAATAATAATA
8494843 TTATTCAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
40 28 0.80
41 7 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (41 bp):
ATTATAAATTATATTAATTATTTATTAAATAATAATAATAA
Found at i:8494846 original size:16 final size:16
Alignment explanation
Indices: 8494798--8494853 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 16
8494788 TATTAAAAAT
8494798 AATAATAA-ATTATTA
1 AATAATAATATTATTA
*
8494813 ATTATATTAATTATTTATTA
1 A--ATAATAA-TA-TTATTA
8494833 AATAATAATATTATTCA
1 AATAATAATATTATT-A
8494850 AATA
1 AATA
8494854 TTAAAAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
15 1 0.03
16 5 0.15
17 13 0.39
18 6 0.18
19 1 0.03
20 7 0.21
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
AATAATAATATTATTA
Found at i:8494875 original size:23 final size:24
Alignment explanation
Indices: 8494828--8494876 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
8494818 ATTAATTATT
* *
8494828 TATTAAATAATAATATTATTCAAA
1 TATTAAATAATAATAATATTAAAA
*
8494852 TATTAAA-AATTATAATATTAAAA
1 TATTAAATAATAATAATATTAAAA
8494875 TA
1 TA
8494877 AGAATATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
TATTAAATAATAATAATATTAAAA
Found at i:8495010 original size:40 final size:41
Alignment explanation
Indices: 8494943--8495022 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 41
8494933 TTTTTATGAA
* *
8494943 ATTAATAAATAATATTAATTATAATAATAAT-TTATTATAT
1 ATTAATAAAAAATATTAATTATAATAATAATATAATTATAT
* *
8494983 ATTATTAAAAAATATTACA-TATTATAATAATATAATTATA
1 ATTAATAAAAAATATTA-ATTATAATAATAATATAATTATA
8495023 ACAATAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
40 26 0.76
41 8 0.24
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (41 bp):
ATTAATAAAAAATATTAATTATAATAATAATATAATTATAT
Found at i:8495055 original size:35 final size:33
Alignment explanation
Indices: 8494983--8495082 Score: 96
Period size: 35 Copynumber: 2.9 Consensus size: 33
8494973 TTTATTATAT
* *
8494983 ATTATTAA-AAAATATTACATATTATAATAATATA
1 ATTATCAATAAAATA-TA-ATATTATAATAATAAA
* *
8495017 ATTATAACAATAAAATATAATATTATATTATTAAA
1 ATTAT--CAATAAAATATAATATTATAATAATAAA
*
8495052 ATTATCAAT-AAATATAATTTTATAATTAATA
1 ATTATCAATAAAATATAATATTATAA-TAATA
8495083 TTTTATTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
32 14 0.25
33 8 0.15
34 5 0.09
35 18 0.33
36 4 0.07
37 6 0.11
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (33 bp):
ATTATCAATAAAATATAATATTATAATAATAAA
Found at i:8501831 original size:14 final size:15
Alignment explanation
Indices: 8501799--8501832 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
8501789 TAGACTTATG
8501799 AAAAGAAACAAAGTA
1 AAAAGAAACAAAGTA
8501814 AAAAGAAACAAAGTA
1 AAAAGAAACAAAGTA
8501829 AAAA
1 AAAA
8501833 AAAATAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.76, C:0.06, G:0.12, T:0.06
Consensus pattern (15 bp):
AAAAGAAACAAAGTA
Found at i:8505311 original size:5 final size:5
Alignment explanation
Indices: 8505301--8505338 Score: 60
Period size: 5 Copynumber: 7.6 Consensus size: 5
8505291 CAAGTACAAT
8505301 AAATA AAAT- AAATA AAATAA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAAT-A AAATA AAATA AAATA AAA
8505339 AATGGATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
4 4 0.13
5 22 0.71
6 5 0.16
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:8505312 original size:9 final size:9
Alignment explanation
Indices: 8505298--8505337 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
8505288 AAACAAGTAC
8505298 AATAAATAA
1 AATAAATAA
8505307 AATAAATAA
1 AATAAATAA
8505316 AATAAA-AA
1 AATAAATAA
*
8505324 TA-AAATAA
1 AATAAATAA
8505332 AATAAA
1 AATAAA
8505338 AAATGGATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 3 0.11
8 6 0.22
9 18 0.67
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (9 bp):
AATAAATAA
Found at i:8505379 original size:3 final size:3
Alignment explanation
Indices: 8505371--8505417 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
8505361 ATATGTACGT
*
8505371 TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA -AA TAA AAA TAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8505416 TA
1 TA
8505418 TATATATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 6 0.15
3 34 0.85
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:8505471 original size:2 final size:2
Alignment explanation
Indices: 8505415--8505451 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8505405 AAATAATAAA
8505415 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8505452 AATGATAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8506770 original size:48 final size:48
Alignment explanation
Indices: 8506718--8506821 Score: 113
Period size: 48 Copynumber: 2.2 Consensus size: 48
8506708 ATAATATATA
* **
8506718 TTTTCAAAAGTATTTT-AAAATTATATATTATATACTTTTTAAAAAATG
1 TTTTCAAAAGTATTTTAAAAAGTATATATTATATAAGTTTT-AAAAATG
** * *
8506766 TTTTC-AATTTTTTTTAAAAAGTATATATTATATAAGTTTTCAAAATG
1 TTTTCAAAAGTATTTTAAAAAGTATATATTATATAAGTTTTAAAAATG
*
8506813 ATTTCAAAA
1 TTTTCAAAA
8506822 CTATATAATA
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
47 17 0.38
48 28 0.62
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.48
Consensus pattern (48 bp):
TTTTCAAAAGTATTTTAAAAAGTATATATTATATAAGTTTTAAAAATG
Found at i:8506868 original size:30 final size:29
Alignment explanation
Indices: 8506832--8506896 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 29
8506822 CTATATAATA
*
8506832 TATATATGCTTTCAAAATGTTTTTAAAAAC
1 TATATATACTTTCAAAATG-TTTTAAAAAC
*
8506862 TATATATATTTTCAAAATGTTTTAAAAAC
1 TATATATACTTTCAAAATGTTTTAAAAAC
8506891 TATATA
1 TATATA
8506897 ATATATATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.45
Consensus pattern (29 bp):
TATATATACTTTCAAAATGTTTTAAAAAC
Found at i:8506894 original size:29 final size:31
Alignment explanation
Indices: 8506830--8506896 Score: 111
Period size: 29 Copynumber: 2.2 Consensus size: 31
8506820 AACTATATAA
8506830 TATATATATGCTTTCAAAATGTTTTTAAAAAC
1 TATATATAT-CTTTCAAAATGTTTTTAAAAAC
8506862 TATATATAT-TTTCAAAATG-TTTTAAAAAC
1 TATATATATCTTTCAAAATGTTTTTAAAAAC
8506891 TATATA
1 TATATA
8506897 ATATATATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
29 16 0.46
30 10 0.29
32 9 0.26
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.45
Consensus pattern (31 bp):
TATATATATCTTTCAAAATGTTTTTAAAAAC
Found at i:8506926 original size:37 final size:36
Alignment explanation
Indices: 8506777--8507049 Score: 310
Period size: 36 Copynumber: 7.6 Consensus size: 36
8506767 TTTCAATTTT
* *
8506777 TTTTAAAAAGTATATATTATATA-AGTTTTCAAAATG
1 TTTTAAAAACTATATAATATATATA-TTTTCAAAATG
* *
8506813 ATTTCAAAACTATATAATATATATATGCTTTCAAAATG
1 TTTTAAAAACTATATAATATATATAT--TTTCAAAATG
8506851 TTTTTAAAAAC-------TATATATATTTTCAAAATG
1 -TTTTAAAAACTATATAATATATATATTTTCAAAATG
*
8506881 TTTTAAAAACTATATAATATATATATTTTAAAAAATG
1 TTTTAAAAACTATATAATATATATATTTT-CAAAATG
** * *
8506918 TTGCAAAAACTATATATTATATTTATTTTCAAAATG
1 TTTTAAAAACTATATAATATATATATTTTCAAAATG
* * *
8506954 TTTAAAAAACTATATAATAAATATATGTTCAAAAATG
1 TTTTAAAAACTATATAATATATATATTTTC-AAAATG
* *
8506991 TTTTAAAAACTATATATTATATTTATTTTCAAAATG
1 TTTTAAAAACTATATAATATATATATTTTCAAAATG
8507027 TTTTAAAAACTATATAATATATA
1 TTTTAAAAACTATATAATATATA
8507050 AATGTTTTCA
Statistics
Matches: 199, Mismatches: 25, Indels: 26
0.80 0.10 0.10
Matches are distributed among these distances:
29 10 0.05
30 10 0.05
32 9 0.05
36 89 0.45
37 63 0.32
38 10 0.05
39 8 0.04
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (36 bp):
TTTTAAAAACTATATAATATATATATTTTCAAAATG
Found at i:8507055 original size:73 final size:72
Alignment explanation
Indices: 8506777--8507055 Score: 356
Period size: 73 Copynumber: 3.9 Consensus size: 72
8506767 TTTCAATTTT
* * * *
8506777 TTTTAAAAAGTATATATTATATAAGTTTTCAAAATGATTTCAAAACTATATAATATATATATGCT
1 TTTTAAAAACTATATATTATATTA-TTTTCAAAATGTTTTAAAAACTATATAATATATATATG--
8506842 TTC-AAAATG
63 TTCAAAAATG
*
8506851 TTTTTAAAAAC----TA-TATA-TATTTTCAAAATGTTTTAAAAACTATATAATATATATATTTT
1 -TTTTAAAAACTATATATTATATTATTTTCAAAATGTTTTAAAAACTATATAATATATATATGTT
*
8506910 AAAAAATG
65 CAAAAATG
** * *
8506918 TTGCAAAAACTATATATTATATTTATTTTCAAAATGTTTAAAAAACTATATAATAAATATATGTT
1 TTTTAAAAACTATATATTATA-TTATTTTCAAAATGTTTTAAAAACTATATAATATATATATGTT
8506983 CAAAAATG
65 CAAAAATG
*
8506991 TTTTAAAAACTATATATTATATTTATTTTCAAAATGTTTTAAAAACTATATAATATATAAATGTT
1 TTTTAAAAACTATATATTATA-TTATTTTCAAAATGTTTTAAAAACTATATAATATATATATGTT
8507056 TTCAAACTAT
Statistics
Matches: 179, Mismatches: 17, Indels: 18
0.84 0.08 0.08
Matches are distributed among these distances:
66 10 0.06
67 6 0.03
68 35 0.20
69 1 0.01
70 6 0.03
71 6 0.03
73 106 0.59
75 9 0.05
ACGTcount: A:0.46, C:0.06, G:0.05, T:0.43
Consensus pattern (72 bp):
TTTTAAAAACTATATATTATATTATTTTCAAAATGTTTTAAAAACTATATAATATATATATGTTC
AAAAATG
Found at i:8507077 original size:28 final size:27
Alignment explanation
Indices: 8507022--8507075 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
8507012 TTTATTTTCA
8507022 AAATGTTTTAAAAACTATATAATATAT
1 AAATGTTTTAAAAACTATATAATATAT
*
8507049 AAATGTTTT-CAAACTATATAATATAT
1 AAATGTTTTAAAAACTATATAATATAT
8507075 A
1 A
8507076 TATATATATG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.41
Consensus pattern (27 bp):
AAATGTTTTAAAAACTATATAATATAT
Found at i:8508251 original size:84 final size:83
Alignment explanation
Indices: 8507624--8508738 Score: 1155
Period size: 84 Copynumber: 13.4 Consensus size: 83
8507614 AATTTATTGA
* * * * * * *
8507624 CAGATAGCCCTTCTTGCTTTGAGTTATGCTGTAAATTTGACT-TGCCTCTAAGCTGAGTGTAATC
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAA--TGA-TGTGCCTTTGAGCTGAGTGTAATC
* * *
8507688 AAACTCGAAGGTC--T-TTAG
63 GAACTCAAAGGTCTTTGTTGG
* * * * * * *
8507706 CAGATAGCTCTTATCGACTTAAGTTATGCTGCAAATTATGGTGCCTTTGAGCTGAGTGTAATTGA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGAT-GTGCCTTTGAGCTGAGTGTAATCGA
* *
8507771 ACTCGAAGG--TAT-TTGG
65 ACTCAAAGGTCTTTGTTGG
* * * *
8507787 CAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGACGTGCCTCTGAGCTGAGTGTAATCGAA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAA
*
8507852 CTCAGAGGTC--T-TTGG
66 CTCAAAGGTCTTTGTTGG
* * * *
8507867 CAGATAGA-CCTTCTAGCCTTAAGATATACCGCAAATGATGTGCCATTGAGCTGAGTGTAATCGA
1 CAGATA-ACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGA
*
8507931 ACTCAAAGGTCATTGTTGG
65 ACTCAAAGGTCTTTGTTGG
* * * * * *
8507950 CAGATAACCCTTCTAGCCTTGAGTTATGCTACAAATGATATGCCCTCGAAGATGAGTGTAATCGA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTTG-AGCTGAGTGTAATCGA
*
8508015 ACTCAAGGGTC--T-TTGG
65 ACTCAAAGGTCTTTGTTGG
* * * * * * *
8508031 CAGATAACCCTTCTAGCCTTGAGTTATACCGCAAATGATATGTCGTTGAGCTGAGTGTAATCAAA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAA
8508096 CTCAAAGGTCTTTGTTGG
66 CTCAAAGGTCTTTGTTGG
* * ** *
8508114 AAGATAACGCTTCTAGCCTTGCGTTATGCTGCAAATGATGTGCCCTTGAAGCTGAGTGTAATCGA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTTG-AGCTGAGTGTAATCGA
8508179 ACTCAAAGGTCTTTGGTTGG
65 ACTCAAAGGTCTTT-GTTGG
* * ** * *
8508199 TAGATAACCCTTCTCA-ACTTAAGAAATGCTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGA
1 CAGATAACCCTTCT-AGCCTTAAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGA
*
8508263 ACTCGAAGGTCTTTGATTGG
65 ACTCAAAGGTCTTTG-TTGG
* * * * * * *
8508283 CAGATAGCCCTTATCGACTTCAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGCGTAGTCGAA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAA
8508348 CTCAAAGGTCTTTGTTGG
66 CTCAAAGGTCTTTGTTGG
* * *
8508366 CAGATAACCCTTCTAGCCTTGAA-TTATACTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
1 CAGATAACCCTTCTAGCCTT-AAGTTATGCTGCAAATGATGTGCCTTTG-AGCTGAGTGTAATCG
*
8508430 AACTCGAAGGTCTTTGGTTGG
64 AACTCAAAGGTCTTT-GTTGG
* * * * * *
8508451 CAGATAACCCTTATGGACTTAAGTTATGCTGCAAATGATGTGCCTTTGAGTTGAGCGTAGTCGAA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAA
*
8508516 CTCGAAGGTCTTTGTTGG
66 CTCAAAGGTCTTTGTTGG
* * * *
8508534 CAGATAACCCTTCTAGCCTTGAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCAA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTTG-AGCTGAGTGTAATCGA
*
8508599 ACTCGAAGGTCTTTGGTTGG
65 ACTCAAAGGTCTTT-GTTGG
* * ** * * ** *
8508619 CAGATAACCCTTCTCGACTTAAACTATGCTGCAAATGATGCGCCTTGGAGCTGAGCATAGTCGAA
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAA
8508684 CTCAAAGGTCTTTTGTTGG
66 CTCAAAGGTC-TTTGTTGG
* * * *
8508703 CAGATAACTCTTCTAGCCTTGAGTTATACTACAAAT
1 CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAAT
8508739 AAATAAAGAA
Statistics
Matches: 873, Mismatches: 133, Indels: 52
0.83 0.13 0.05
Matches are distributed among these distances:
79 1 0.00
80 125 0.14
81 110 0.13
82 32 0.04
83 176 0.20
84 293 0.34
85 135 0.15
86 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (83 bp):
CAGATAACCCTTCTAGCCTTAAGTTATGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAA
CTCAAAGGTCTTTGTTGG
Found at i:8510095 original size:95 final size:94
Alignment explanation
Indices: 8509863--8510106 Score: 350
Period size: 95 Copynumber: 2.6 Consensus size: 94
8509853 AGTCGAGATA
* *
8509863 TTTAACCATTTGCTCTAGAGGGACAACTCAA--TATTATTGTATATATATTATAATCACCTTTAT
1 TTTAACCAATTGCTTTAGAGGGACAACTCAAGCT-TTATTG----TATATTATAATCACCTTTAT
8509926 CAGGCTAGCTGAATATTATCCATAAAGCCGGGCG
61 CAGGCTAGCTGAATATTATCCATAAAGCCGGGCG
* *
8509960 TTTAACCAATTTCTTTAGAGGGACAACTCAAGCTTTATTGTATAGTATAATCACCTTTA-CTAGG
1 TTTAACCAATTGCTTTAGAGGGACAACTCAAGCTTTATTGTATATTATAATCACCTTTATC-AGG
*
8510024 CTAGCTGAATCTTATCCATAAAGCCGGGGCG
65 CTAGCTGAATATTATCCATAAAGCC-GGGCG
*
8510055 TTTAACCAATTGCTTTAAAGGGACAACTCAAGCTTTATTGTATATTATAATC
1 TTTAACCAATTGCTTTAGAGGGACAACTCAAGCTTTATTGTATATTATAATC
8510107 TGGGTATACG
Statistics
Matches: 135, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
93 1 0.01
94 45 0.33
95 54 0.40
97 28 0.21
98 6 0.04
99 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (94 bp):
TTTAACCAATTGCTTTAGAGGGACAACTCAAGCTTTATTGTATATTATAATCACCTTTATCAGGC
TAGCTGAATATTATCCATAAAGCCGGGCG
Found at i:8512681 original size:41 final size:42
Alignment explanation
Indices: 8512635--8512729 Score: 106
Period size: 41 Copynumber: 2.3 Consensus size: 42
8512625 AATGAAAAAT
* * *
8512635 AAATAAAAGAACAATTACAAACAC-ATGAA-ATAAATAAGGTA
1 AAATAAAAGAA-AATTAAAAACACAATAAAGATAAATAAGATA
*
8512676 AAAT-AAAGAAAATTAAAAATACAATAAAGATAAATAAGATA
1 AAATAAAAGAAAATTAAAAACACAATAAAGATAAATAAGATA
* *
8512717 AGATAAAGGAAAA
1 AAATAAAAGAAAA
8512730 AAATAATGAT
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
39 10 0.22
40 10 0.22
41 18 0.40
42 7 0.16
ACGTcount: A:0.67, C:0.05, G:0.11, T:0.17
Consensus pattern (42 bp):
AAATAAAAGAAAATTAAAAACACAATAAAGATAAATAAGATA
Found at i:8512890 original size:3 final size:3
Alignment explanation
Indices: 8512882--8512921 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
8512872 ATATGTACGT
*
8512882 TAA TAA TAA TAA TAA TAA TAA -AA TAA TAA TAA CAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
8512922 TATATATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:8512908 original size:17 final size:17
Alignment explanation
Indices: 8512886--8512919 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8512876 GTACGTTAAT
*
8512886 AATAATAATAATAATAA
1 AATAATAATAACAATAA
8512903 AATAATAATAACAATAA
1 AATAATAATAACAATAA
8512920 TATATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (17 bp):
AATAATAATAACAATAA
Found at i:8512908 original size:20 final size:20
Alignment explanation
Indices: 8512883--8512921 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
8512873 TATGTACGTT
*
8512883 AATAATAATAATAATAATAA
1 AATAATAATAACAATAATAA
8512903 AATAATAATAACAATAATA
1 AATAATAATAACAATAATA
8512922 TATATATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (20 bp):
AATAATAATAACAATAATAA
Found at i:8512926 original size:2 final size:2
Alignment explanation
Indices: 8512919--8512952 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8512909 AATAACAATA
8512919 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8512953 GAATGATAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8514268 original size:29 final size:30
Alignment explanation
Indices: 8514221--8514287 Score: 100
Period size: 29 Copynumber: 2.3 Consensus size: 30
8514211 AAAATTATAT
*
8514221 ATTATATACTTTTTAAAAAATGTTTTCAAA
1 ATTATATACGTTTTAAAAAATGTTTTCAAA
* *
8514251 ATTATATA-GTTTTCAAAAATGTTTTTAAA
1 ATTATATACGTTTTAAAAAATGTTTTCAAA
8514280 ATTATATA
1 ATTATATA
8514288 TTATATAAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 26 0.76
30 8 0.24
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.48
Consensus pattern (30 bp):
ATTATATACGTTTTAAAAAATGTTTTCAAA
Found at i:8514281 original size:66 final size:63
Alignment explanation
Indices: 8514189--8514323 Score: 182
Period size: 66 Copynumber: 2.1 Consensus size: 63
8514179 ATCTATATAA
** * *
8514189 TATATATTTTCAAAAGTATTTTAAAATTATATATTATATACTTTTTAAAAAATGTTTTCAAAAT
1 TATATATTTTCAAAAGTATTTTAAAATTATATATTATATAAGTTTT-AAAAATGATTTCAAAAC
*
8514253 TATATAGTTTTCAAAAATGT-TTTTAAAATTATATATTATATAAGTTTTCAAAATGATTTCAAAA
1 TATATA-TTTTC-AAAA-GTATTTTAAAATTATATATTATATAAGTTTTAAAAATGATTTCAAAA
8514317 C
63 C
8514318 TATATA
1 TATATA
8514324 ATATATATGC
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
64 6 0.10
65 25 0.40
66 30 0.48
67 2 0.03
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (63 bp):
TATATATTTTCAAAAGTATTTTAAAATTATATATTATATAAGTTTTAAAAATGATTTCAAAAC
Found at i:8514301 original size:102 final size:100
Alignment explanation
Indices: 8514175--8514544 Score: 284
Period size: 102 Copynumber: 3.5 Consensus size: 100
8514165 TATATTTTCC
* * * **
8514175 AAAAATCTATATAATATAT-ATTTTCAAAAGTATTTTAAAATTATATATTATATACT-TTTTAAA
1 AAAAAT-TATATATTATATAATTTTCAAAA-TATTTAAAAACTATATATTATATA-TGCATT-AA
*
8514238 AAATG-TTTTCAAAA-T-TATATAGTTTTCAAAAATGTTTT
62 AAATGTTTTTAAAAACTATATATA-TTTTC-AAAATGTTTT
* * *
8514276 TAAAATTATATATTATATAAGTTTTCAAAATGATTTCAAAACTATATAATATATATGCATTAAAA
1 AAAAATTATATATTATATAA-TTTTCAAAAT-ATTTAAAAACTATATATTATATATGCATTAAAA
*
8514341 CTGTTTTTAAAAACTATATATATTTTCAAAATGTTTT
64 ATGTTTTTAAAAACTATATATATTTTCAAAATGTTTT
* * * *** *
8514378 AAAAAATATATAATATATATATATTTTCAAAAATGTTGTAAAAACTATATATTATATTTATTTTT
1 AAAAATTATAT-AT-TATATA-ATTTTC-AAAATATT-TAAAAACTATATATTATATATGCATTA
*
8514443 AAAATG-TTTAAAAAACTATATAATATATATATTTTCAAAAATGTTTT
61 AAAATGTTTTTAAAAAC-------TATATATATTTTC-AAAATGTTTT
* * * * *
8514490 AAAAACTATATATTATATTTATTTTTAAAATGTTTTAAAAACTATATAATATATA
1 AAAAATTATATATTATA-TAATTTTCAAAAT-ATTTAAAAACTATATATTATATA
8514545 AATATTTTTA
Statistics
Matches: 220, Mismatches: 27, Indels: 36
0.78 0.10 0.13
Matches are distributed among these distances:
100 11 0.05
101 14 0.06
102 58 0.26
103 8 0.04
104 28 0.13
105 31 0.14
109 23 0.10
110 11 0.05
111 16 0.07
112 20 0.09
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (100 bp):
AAAAATTATATATTATATAATTTTCAAAATATTTAAAAACTATATATTATATATGCATTAAAAAT
GTTTTTAAAAACTATATATATTTTCAAAATGTTTT
Found at i:8514306 original size:36 final size:35
Alignment explanation
Indices: 8514251--8514545 Score: 264
Period size: 36 Copynumber: 8.3 Consensus size: 35
8514241 TGTTTTCAAA
* * *
8514251 ATTATATAGTTTTCAAAAATGTTTTTAAAATTATAT
1 ATTATATAATTTTC-AAAATGTTTTAAAAACTATAT
* *
8514287 ATTATATAAGTTTTCAAAATGATTTCAAAACTATAT
1 ATTATATAA-TTTTCAAAATGTTTTAAAAACTATAT
* *
8514323 AATATAT-ATGCATT-AAAACTGTTTTTAAAAAC----T
1 ATTATATAAT--TTTCAAAA-TG-TTTTAAAAACTATAT
*
8514356 A-TATAT-ATTTTCAAAATGTTTTAAAAAATATAT
1 ATTATATAATTTTCAAAATGTTTTAAAAACTATAT
*
8514389 AATATATATATATTTTCAAAAATGTTGTAAAAACTATAT
1 -AT-TATATA-ATTTTC-AAAATGTTTTAAAAACTATAT
* * *
8514428 ATTATATTTATTTTTAAAATGTTTAAAAAACTATAT
1 ATTATA-TAATTTTCAAAATGTTTTAAAAACTATAT
*
8514464 AATATATATATTTTCAAAAATGTTTTAAAAACTATAT
1 ATTATATA-ATTTTC-AAAATGTTTTAAAAACTATAT
* *
8514501 ATTATATTTATTTTTAAAATGTTTTAAAAACTATAT
1 ATTATA-TAATTTTCAAAATGTTTTAAAAACTATAT
*
8514537 AATATATAA
1 ATTATATAA
8514546 ATATTTTTAA
Statistics
Matches: 214, Mismatches: 25, Indels: 41
0.76 0.09 0.15
Matches are distributed among these distances:
29 9 0.04
30 4 0.02
31 4 0.02
32 7 0.03
33 3 0.01
34 2 0.01
35 8 0.04
36 96 0.45
37 52 0.24
38 10 0.05
39 19 0.09
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (35 bp):
ATTATATAATTTTCAAAATGTTTTAAAAACTATAT
Found at i:8514434 original size:75 final size:75
Alignment explanation
Indices: 8514253--8514620 Score: 356
Period size: 73 Copynumber: 5.1 Consensus size: 75
8514243 TTTTCAAAAT
* * * * *
8514253 TATATAGTTTTCAAAAATGTTTTTAAAATTATATATTATATA-AGTTTTCAAAATGATTTCAAAA
1 TATATA-TTTTCAAAAATGTTTTAAAAACTATATATTATATATA-TTTTTAAAATGTTTTAAAAA
*
8514317 CTATATAATATA
64 ATATATAATATA
** * *
8514329 TATGCA--TT-AAAACTGTTTTTAAAAAC-------TATATATATTTTCAAAATGTTTTAAAAAA
1 TATATATTTTCAAAAATG-TTTTAAAAACTATATATTATATATATTTTTAAAATGTTTTAAAAAA
8514384 TATATAATATA
65 TATATAATATA
* *
8514395 TATATATTTTCAAAAATGTTGTAAAAACTATATATTATATTTATTTTTAAAATG-TTTAAAAAAC
1 TATATATTTTCAAAAATGTTTTAAAAACTATATATTATATATATTTTTAAAATGTTTTAAAAAA-
8514459 TATAT-A-ATA
65 TATATAATATA
* *
8514468 TATATATTTTCAAAAATGTTTTAAAAACTATATATTATATTTATTTTTAAAATGTTTTAAAAACT
1 TATATATTTTCAAAAATGTTTTAAAAACTATATATTATATATATTTTTAAAATGTTTTAAAAAAT
8514533 ATATAATATA
66 ATATAATATA
* * ** * * * *
8514543 TAAATATTTTTAAACGTGTTTTCAAAA-T-TGTATTATATATATATATTAAAAATGTTTT-TAAA
1 TATATATTTTCAAAAATGTTTTAAAAACTATATATTATATATAT-T-TTTAAAATGTTTTAAAAA
*
8514605 CTATATAATATA
64 ATATATAATATA
8514617 TATA
1 TATA
8514621 CATATATATA
Statistics
Matches: 248, Mismatches: 26, Indels: 38
0.79 0.08 0.12
Matches are distributed among these distances:
66 39 0.16
67 1 0.00
68 11 0.04
69 6 0.02
72 6 0.02
73 83 0.33
74 39 0.16
75 59 0.24
76 4 0.02
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (75 bp):
TATATATTTTCAAAAATGTTTTAAAAACTATATATTATATATATTTTTAAAATGTTTTAAAAAAT
ATATAATATA
Found at i:8514599 original size:36 final size:38
Alignment explanation
Indices: 8514355--8514620 Score: 298
Period size: 36 Copynumber: 7.2 Consensus size: 38
8514345 TTTTAAAAAC
* * *
8514355 TATATATATTTTCAAAATGTTTTAAAAAATATATAATA
1 TATATATATTTTAAAAATGTTTTAAAAACTATATATTA
*
8514393 TATATATATTTTCAAAAATGTTGTAAAAACTATATATTA
1 TATATATATTTT-AAAAATGTTTTAAAAACTATATATTA
* *
8514432 TAT-T-TATTTTTAAAATGTTTAAAAAACTATATA--A
1 TATATATATTTTAAAAATGTTTTAAAAACTATATATTA
8514466 TATATATATTTTCAAAAATGTTTTAAAAACTATATATTA
1 TATATATATTTT-AAAAATGTTTTAAAAACTATATATTA
* *
8514505 TAT-T-TATTTTTAAAATGTTTTAAAAACTATATAATA
1 TATATATATTTTAAAAATGTTTTAAAAACTATATATTA
* ** * *
8514541 TATAAATATTTTTAAACGTGTTTTCAAAA-T-TGTATTA
1 TATATATA-TTTTAAAAATGTTTTAAAAACTATATATTA
* * *
8514578 TATATATATATTAAAAATGTTTT-TAAACTATATAATA
1 TATATATATTTTAAAAATGTTTTAAAAACTATATATTA
8514615 TATATA
1 TATATA
8514621 CATATATATA
Statistics
Matches: 192, Mismatches: 25, Indels: 23
0.80 0.10 0.10
Matches are distributed among these distances:
34 4 0.02
35 4 0.02
36 66 0.34
37 56 0.29
38 17 0.09
39 45 0.23
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (38 bp):
TATATATATTTTAAAAATGTTTTAAAAACTATATATTA
Found at i:8519049 original size:44 final size:44
Alignment explanation
Indices: 8518999--8519175 Score: 295
Period size: 44 Copynumber: 4.1 Consensus size: 44
8518989 GATGTATGTC
* *
8518999 TTCCCCTCATAGTCCTTTGGCCAGACTCTATGCAGCCAAGTATT
1 TTCCCCTCATAGTCTTTTGACCAGACTCTATGCAGCCAAGTATT
8519043 TTCCCCTC--AGTCTTTTGACCAGACTCTATGCAGCCAAGTATT
1 TTCCCCTCATAGTCTTTTGACCAGACTCTATGCAGCCAAGTATT
*
8519085 TTCCCCTCAGAGTCTTTTGACCAGACTCTATGCAGCCAAGTATT
1 TTCCCCTCATAGTCTTTTGACCAGACTCTATGCAGCCAAGTATT
* *
8519129 TTTCCGTCATAGTCTTTTGACCAGACTCTATGCAGCCAAGTATT
1 TTCCCCTCATAGTCTTTTGACCAGACTCTATGCAGCCAAGTATT
8519173 TTC
1 TTC
8519176 TTCGTGGCAA
Statistics
Matches: 125, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
42 40 0.32
44 85 0.68
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.34
Consensus pattern (44 bp):
TTCCCCTCATAGTCTTTTGACCAGACTCTATGCAGCCAAGTATT
Found at i:8524654 original size:15 final size:15
Alignment explanation
Indices: 8524634--8524667 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
8524624 TCGTGAAGTC
*
8524634 GATTCAAGCTTGAAT
1 GATTCAAGATTGAAT
8524649 GATTCAAGATTGAAT
1 GATTCAAGATTGAAT
8524664 GATT
1 GATT
8524668 AGAGCATGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (15 bp):
GATTCAAGATTGAAT
Found at i:8534703 original size:2 final size:2
Alignment explanation
Indices: 8534696--8534911 Score: 138
Period size: 2 Copynumber: 116.0 Consensus size: 2
8534686 AAATACTACG
* *
8534696 AT AT AT AT A- AT AT AT A- AT A- AT A- AT AT AA AT AT AA AT ACT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T
8534735 AT A- AT AT AT AT A- AT A- AT AT AT -T AT AT ACT AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT
* *
8534773 AGT AC AC A- AT AT AT A- AT AT A- AT AT A- AT AT AT AT A- AT A-
1 A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
8534810 AT AT A- AT AT AT ACT AT AT AT AT GAT AT AT AT -T AT AC A- AT AT
1 AT AT AT AT AT AT A-T AT AT AT AT -AT AT AT AT AT AT AT AT AT AT
8534851 AT A- AT AT ACT AT AT AT -T AT AT AT A- AT A- AT AT AT AT ACT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT
*
8534891 A- AT AA AT ACT AT AT -T AT AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT
8534912 TATGTAACAT
Statistics
Matches: 174, Mismatches: 8, Indels: 64
0.71 0.03 0.26
Matches are distributed among these distances:
1 24 0.14
2 134 0.77
3 16 0.09
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (2 bp):
AT
Found at i:8534710 original size:7 final size:7
Alignment explanation
Indices: 8534698--8534911 Score: 158
Period size: 7 Copynumber: 29.9 Consensus size: 7
8534688 ATACTACGAT
8534698 ATATATA
1 ATATATA
8534705 ATATATA
1 ATATATA
8534712 ATA-ATA
1 ATATATA
8534718 ATATA-A
1 ATATATA
8534724 ATATA-A
1 ATATATA
8534730 ATACTATA
1 ATA-TATA
8534738 ATATAT-
1 ATATATA
8534744 ATA-ATA
1 ATATATA
8534750 ATATATTA
1 ATATA-TA
8534758 TATACTATA
1 -ATA-TATA
8534767 ATATATA
1 ATATATA
* * *
8534774 GTACACA
1 ATATATA
8534781 ATATAT-
1 ATATATA
8534787 A-ATATA
1 ATATATA
8534793 ATATA-A
1 ATATATA
8534799 TATATATA
1 -ATATATA
8534807 ATAATATA
1 AT-ATATA
8534815 ATATATA
1 ATATATA
8534822 CTATATATA
1 --ATATATA
8534831 TGATATATA
1 --ATATATA
* *
8534840 TTATACA
1 ATATATA
8534847 ATATATA
1 ATATATA
8534854 ATATACT-
1 ATATA-TA
*
8534861 ATATATT
1 ATATATA
8534868 ATATATA
1 ATATATA
8534875 ATAATATA
1 AT-ATATA
8534883 TATACTATA
1 -ATA-TATA
*
8534892 ATAAATA
1 ATATATA
* *
8534899 CTATATT
1 ATATATA
8534906 ATATAT
1 ATATAT
8534912 TATGTAACAT
Statistics
Matches: 169, Mismatches: 18, Indels: 40
0.74 0.08 0.18
Matches are distributed among these distances:
5 6 0.04
6 26 0.15
7 83 0.49
8 27 0.16
9 25 0.15
10 2 0.01
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (7 bp):
ATATATA
Found at i:8537347 original size:7 final size:7
Alignment explanation
Indices: 8537335--8537379 Score: 63
Period size: 7 Copynumber: 6.4 Consensus size: 7
8537325 GTCAAAGAAA
8537335 GTCAACG
1 GTCAACG
8537342 GTCAACG
1 GTCAACG
* *
8537349 ATCAATG
1 GTCAACG
8537356 GTCAACG
1 GTCAACG
8537363 GTCAACG
1 GTCAACG
*
8537370 GTCAAAG
1 GTCAACG
8537377 GTC
1 GTC
8537380 GGGTCGAGTC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.31, C:0.24, G:0.27, T:0.18
Consensus pattern (7 bp):
GTCAACG
Done.