Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007999.1 Hibiscus syriacus cultivar Beakdansim tig00110450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11700749
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 36 of 50
Found at i:8712349 original size:123 final size:123
Alignment explanation
Indices: 8712217--8712531 Score: 524
Period size: 123 Copynumber: 2.6 Consensus size: 123
8712207 TCCATAGAAA
*
8712217 GTTCATAATGAGAAGAACTCATCTTAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCG
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCG
*
8712282 ACCTTTTGCATGACTCTATCACAGAAGGAGATATATCATCATCAACATTTCCAGAAGT
66 ACCTTTTACATGACTCTATCACAGAAGGAGATATATCATCATCAACATTTCCAGAAGT
* *
8712340 GTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGGAGTTCATAATGAGAAGAGCTTGTTCG
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCG
* * *
8712405 ACCTTTTACATGACTTTATCACAGAAGGAGATATATCATCATCAATATTTCCGGAAGT
66 ACCTTTTACATGACTCTATCACAGAAGGAGATATATCATCATCAACATTTCCAGAAGT
* ** *
8712463 GTTCATAATAAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCA
1 GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCG
8712527 ACCTT
66 ACCTT
8712532 GCCTTAATTC
Statistics
Matches: 179, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
122 36 0.20
123 143 0.80
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (123 bp):
GTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCG
ACCTTTTACATGACTCTATCACAGAAGGAGATATATCATCATCAACATTTCCAGAAGT
Found at i:8712907 original size:3 final size:3
Alignment explanation
Indices: 8712891--8712968 Score: 88
Period size: 3 Copynumber: 26.0 Consensus size: 3
8712881 TCCATTTTTT
* *
8712891 TTA TTG TTA ATA TTA TTA TTA TT- TTA TTA TTA TTA TT- TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
**
8712935 TTTA TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8712969 GAAACATGCC
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
2 4 0.06
3 53 0.83
4 7 0.11
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:8712938 original size:22 final size:23
Alignment explanation
Indices: 8712889--8712968 Score: 92
Period size: 22 Copynumber: 3.5 Consensus size: 23
8712879 TATCCATTTT
* *
8712889 TTTTATTGTTAATATTATTATTA
1 TTTTATTATTATTATTATTATTA
8712912 TTTTATTATTATTATT-TTATT-
1 TTTTATTATTATTATTATTATTA
**
8712933 TATTTATTATTATTATTATTAAAA
1 T-TTTATTATTATTATTATTATTA
8712957 TTATTATTATTA
1 TT-TTATTATTA
8712969 GAAACATGCC
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
21 1 0.02
22 20 0.41
23 18 0.37
24 10 0.20
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (23 bp):
TTTTATTATTATTATTATTATTA
Found at i:8714443 original size:16 final size:16
Alignment explanation
Indices: 8714422--8714452 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8714412 TTTTACTTTC
*
8714422 ATATATTTATGATTAT
1 ATATATTTATCATTAT
8714438 ATATATTTATCATTA
1 ATATATTTATCATTA
8714453 GTATTACTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (16 bp):
ATATATTTATCATTAT
Found at i:8714869 original size:11 final size:13
Alignment explanation
Indices: 8714832--8714871 Score: 50
Period size: 11 Copynumber: 3.3 Consensus size: 13
8714822 TGTTTAATAA
8714832 AATATA-TATATT
1 AATATATTATATT
*
8714844 AATATATTATCTT
1 AATATATTATATT
8714857 AA-A-ATTATATT
1 AATATATTATATT
8714868 AATA
1 AATA
8714872 AACTTAACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 9 0.38
12 8 0.33
13 7 0.29
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (13 bp):
AATATATTATATT
Found at i:8716206 original size:64 final size:65
Alignment explanation
Indices: 8716081--8716208 Score: 179
Period size: 65 Copynumber: 2.0 Consensus size: 65
8716071 ATTAAAATTT
* * * *
8716081 TTAAAATGTCGAAGTTAAAAATAATATGAAACTTTTAGAATTTTTTAACAAATTTGAAAAAAATA
1 TTAAAATGTCGAAGTTAAAAATAATATGAAACTTGTAGAATTTTTAAAAAAAATTGAAAAAAATA
*
8716146 TTAAAATTTCGAAGTTAAAAA-AATATGAATA-TTGTAGAAATTTTTAAAAAAAATTGAAAAAAA
1 TTAAAATGTCGAAGTTAAAAATAATATGAA-ACTTGTAG-AATTTTTAAAAAAAATTGAAAAAAA
8716209 AAACTACATG
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
64 13 0.23
65 43 0.77
ACGTcount: A:0.54, C:0.03, G:0.09, T:0.34
Consensus pattern (65 bp):
TTAAAATGTCGAAGTTAAAAATAATATGAAACTTGTAGAATTTTTAAAAAAAATTGAAAAAAATA
Found at i:8723052 original size:32 final size:32
Alignment explanation
Indices: 8723016--8723085 Score: 113
Period size: 32 Copynumber: 2.2 Consensus size: 32
8723006 TTTTTTGGTT
* *
8723016 AGATGAAAGGAGTTTGTTGTATAAGAGATTGA
1 AGATGAAAGGAGTGTGTTATATAAGAGATTGA
*
8723048 AGATGAAAGGAGTGTGTTATGTAAGAGATTGA
1 AGATGAAAGGAGTGTGTTATATAAGAGATTGA
8723080 AGATGA
1 AGATGA
8723086 TGTGCACAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.39, C:0.00, G:0.33, T:0.29
Consensus pattern (32 bp):
AGATGAAAGGAGTGTGTTATATAAGAGATTGA
Found at i:8724653 original size:21 final size:21
Alignment explanation
Indices: 8724629--8724676 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
8724619 CCGCTACACG
8724629 CGCAATAGCGCCCGCCACGGC
1 CGCAATAGCGCCCGCCACGGC
* * *
8724650 CGCAATAGTGGCCGCGACGGC
1 CGCAATAGCGCCCGCCACGGC
*
8724671 CACAAT
1 CGCAAT
8724677 CACGGAAACC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.40, G:0.29, T:0.08
Consensus pattern (21 bp):
CGCAATAGCGCCCGCCACGGC
Found at i:8728987 original size:31 final size:31
Alignment explanation
Indices: 8728952--8729016 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
8728942 TAAATTGGTC
8728952 ACTAACATTATC-AGTTTGTAAA-AAAATAATT
1 ACTAACATTATCGA-TTTG-AAACAAAATAATT
* *
8728983 ACTAACGTTATCGATTTGAAACAAAATTATT
1 ACTAACATTATCGATTTGAAACAAAATAATT
8729014 ACT
1 ACT
8729017 CCATCATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 3 0.10
31 26 0.87
32 1 0.03
ACGTcount: A:0.45, C:0.12, G:0.08, T:0.35
Consensus pattern (31 bp):
ACTAACATTATCGATTTGAAACAAAATAATT
Found at i:8737769 original size:17 final size:20
Alignment explanation
Indices: 8737749--8737797 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 20
8737739 TATTTTTTTT
8737749 AATAATT-TT-AT-ATATAA
1 AATAATTATTAATAATATAA
8737766 AATAATTATTAATAATAT-A
1 AATAATTATTAATAATATAA
8737785 AATAA--ATTAATAA
1 AATAATTATTAATAA
8737798 ATTATAAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
17 15 0.52
18 2 0.07
19 8 0.28
20 4 0.14
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AATAATTATTAATAATATAA
Found at i:8737789 original size:19 final size:19
Alignment explanation
Indices: 8737749--8737808 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
8737739 TATTTTTTTT
8737749 AATAATT-TT-AT-ATATAA
1 AATAATTATTAATAATAT-A
8737766 AATAATTATTAATAATATA
1 AATAATTATTAATAATATA
8737785 AATAA--ATTAATAAATTATA
1 AATAATTATTAAT-AA-TATA
8737804 AATAA
1 AATAA
8737809 ACTAATTGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
17 13 0.34
18 4 0.11
19 17 0.45
20 4 0.11
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
AATAATTATTAATAATATA
Found at i:8737809 original size:19 final size:17
Alignment explanation
Indices: 8737773--8737814 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 17
8737763 TAAAATAATT
8737773 ATTAATAATATAAATAA
1 ATTAATAATATAAATAA
8737790 ATTAATAAATTATAAATAA
1 ATTAAT-AA-TATAAATAA
*
8737809 ACTAAT
1 ATTAAT
8737815 TGAATAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 2 0.09
19 14 0.64
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (17 bp):
ATTAATAATATAAATAA
Found at i:8738534 original size:16 final size:16
Alignment explanation
Indices: 8738513--8738550 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
8738503 ATACTTTATT
8738513 TCTTACATGATCTGCG
1 TCTTACATGATCTGCG
*
8738529 TCTTACCTGATCTGCG
1 TCTTACATGATCTGCG
8738545 TCTTAC
1 TCTTAC
8738551 TTAAGATGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.16, C:0.29, G:0.16, T:0.39
Consensus pattern (16 bp):
TCTTACATGATCTGCG
Found at i:8738933 original size:25 final size:22
Alignment explanation
Indices: 8738914--8739018 Score: 69
Period size: 21 Copynumber: 4.8 Consensus size: 22
8738904 GAAAATATAC
*
8738914 ATAAATAAAATAAGATAAA-ACA
1 ATAAATAAAATAA-ATAAATAAA
* * *
8738936 A-AGATAAAGTAAAGAAA-ATAA
1 ATAAATAAAATAAATAAATA-AA
8738957 ATAAAT-AAATAAATAAATAAA
1 ATAAATAAAATAAATAAATAAA
* *
8738978 ATAAGTAAAAGGTAAATAAA-GAA
1 ATAAATAAAA--TAAATAAATAAA
8739001 ATAAATAAAGA-AAATAAA
1 ATAAATAAA-ATAAATAAA
8739019 ATTAAAATCA
Statistics
Matches: 66, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
20 5 0.08
21 34 0.52
22 8 0.12
23 10 0.15
24 9 0.14
ACGTcount: A:0.72, C:0.01, G:0.09, T:0.18
Consensus pattern (22 bp):
ATAAATAAAATAAATAAATAAA
Found at i:8738960 original size:4 final size:4
Alignment explanation
Indices: 8738951--8739009 Score: 66
Period size: 4 Copynumber: 14.8 Consensus size: 4
8738941 AAAGTAAAGA
* ** *
8738951 AAAT AAAT AAAT AAAT AAAT AAAT AAAAT AAGT AAA- AGGT AAAT AAAG
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT AAAT AAAT AAAT AAAT
8738999 AAAT AAAT AAA
1 AAAT AAAT AAA
8739010 GAAAATAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
3 1 0.02
4 40 0.89
5 4 0.09
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:8739112 original size:2 final size:2
Alignment explanation
Indices: 8739107--8739143 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8739097 ATATAACAAA
8739107 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8739144 CAATATTAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8739203 original size:22 final size:22
Alignment explanation
Indices: 8739178--8739239 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
8739168 AGAGAAAATA
8739178 AAATAAAAATAATAATAATAAT
1 AAATAAAAATAATAATAATAAT
** *
8739200 AAATCCAAAGAATAATAATAAT
1 AAATAAAAATAATAATAATAAT
*
8739222 AAA-AGAAATAAATAATAA
1 AAATAAAAAT-AATAATAA
8739240 ATGAAACAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 3 0.09
22 30 0.91
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (22 bp):
AAATAAAAATAATAATAATAAT
Found at i:8739235 original size:16 final size:16
Alignment explanation
Indices: 8739216--8739259 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
8739206 AAAGAATAAT
*
8739216 AATAATAAAAGAAATA
1 AATAATAAAAGAAACA
*
8739232 AATAATAAATGAAACA
1 AATAATAAAAGAAACA
8739248 AA-AA-AAAAGAAA
1 AATAATAAAAGAAA
8739260 AATATATGTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 7 0.28
15 2 0.08
16 16 0.64
ACGTcount: A:0.77, C:0.02, G:0.07, T:0.14
Consensus pattern (16 bp):
AATAATAAAAGAAACA
Found at i:8740323 original size:24 final size:23
Alignment explanation
Indices: 8740296--8740381 Score: 73
Period size: 24 Copynumber: 3.6 Consensus size: 23
8740286 TGTAAATAAA
*
8740296 TATATTATATATAGATGAATATAT
1 TATATAATATATAGAT-AATATAT
**
8740320 TATATAATATAATTTATAATATAT
1 TATATAATAT-ATAGATAATATAT
** *
8740344 TATATAATATAATTTATAATATAAA
1 TATATAATAT-ATAGATAATAT-AT
*
8740369 TATATATTATATA
1 TATATAATATATA
8740382 ATATAGTAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
24 40 0.74
25 14 0.26
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (23 bp):
TATATAATATATAGATAATATAT
Found at i:8740328 original size:12 final size:12
Alignment explanation
Indices: 8740313--8740386 Score: 88
Period size: 12 Copynumber: 6.5 Consensus size: 12
8740303 TATATAGATG
8740313 AATATATTATAT
1 AATATATTATAT
8740325 AATATAATT-TAT
1 AATAT-ATTATAT
8740337 AATATATTATAT
1 AATATATTATAT
8740349 AATATAATT-TAT
1 AATAT-ATTATAT
8740361 AATATA--A-AT
1 AATATATTATAT
8740370 -ATATATTATAT
1 AATATATTATAT
8740381 AATATA
1 AATATA
8740387 GTAATGTTTG
Statistics
Matches: 54, Mismatches: 0, Indels: 16
0.77 0.00 0.23
Matches are distributed among these distances:
8 5 0.09
9 2 0.04
10 1 0.02
11 6 0.11
12 34 0.63
13 6 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
AATATATTATAT
Found at i:8740386 original size:5 final size:5
Alignment explanation
Indices: 8740316--8740386 Score: 54
Period size: 5 Copynumber: 13.0 Consensus size: 5
8740306 ATAGATGAAT
*
8740316 ATATT ATATA ATATA ATTTATA ATATA TTATATA ATATA ATTTATA ATATA
1 ATATA ATATA ATATA A--TATA ATATA --ATATA ATATA A--TATA ATATA
*
8740367 A-ATA TATATT ATATA ATATA
1 ATATA -ATATA ATATA ATATA
8740387 GTAATGTTTG
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
4 3 0.05
5 35 0.64
6 2 0.04
7 15 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (5 bp):
ATATA
Found at i:8740742 original size:37 final size:37
Alignment explanation
Indices: 8740649--8740786 Score: 189
Period size: 36 Copynumber: 3.8 Consensus size: 37
8740639 TCAAAGCTTG
8740649 GTGTTTCAAGAGAAAC-ATGTTCAAAGGTTTTCTTTTT
1 GTGTTTCAAGAGAAACAAT-TTCAAAGGTTTTCTTTTT
*
8740686 -TGTTTCAAGAGAAATAATTTCAAAGGTTTTCTTTTT
1 GTGTTTCAAGAGAAACAATTTCAAAGGTTTTCTTTTT
*
8740722 GTGTTCCAAGAGAAACAATTTCAAAGG---T-TTTTT
1 GTGTTTCAAGAGAAACAATTTCAAAGGTTTTCTTTTT
*
8740755 GTGTTTCAAGAGAAAACGATTTCAAAGGTTTT
1 GTGTTTCAAGAG-AAACAATTTCAAAGGTTTT
8740787 TTCAAGAGAA
Statistics
Matches: 90, Mismatches: 5, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
33 16 0.18
34 15 0.17
36 32 0.36
37 27 0.30
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (37 bp):
GTGTTTCAAGAGAAACAATTTCAAAGGTTTTCTTTTT
Found at i:8740789 original size:73 final size:72
Alignment explanation
Indices: 8740649--8740786 Score: 194
Period size: 73 Copynumber: 1.9 Consensus size: 72
8740639 TCAAAGCTTG
* *
8740649 GTGTTTCAAGAGAAACATGTTCAAAGGTTTTCTTTTTTGTTTCAAGAGAAATAATTTCAAAGGTT
1 GTGTTCCAAGAGAAACATGTTCAAAGG-TTTCTTTTGTGTTTCAAGAGAAATAATTTCAAAGGTT
8740714 TTCTTTTT
65 TTCTTTTT
8740722 GTGTTCCAAGAGAAACAAT-TTCAAAGG-TT-TTTTGTGTTTCAAGAGAAA-ACGATTTCAAAGG
1 GTGTTCCAAGAGAAAC-ATGTTCAAAGGTTTCTTTTGTGTTTCAAGAGAAATA--ATTTCAAAGG
8740783 TTTT
63 TTTT
8740787 TTCAAGAGAA
Statistics
Matches: 60, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
69 1 0.02
70 18 0.30
71 16 0.27
73 23 0.38
74 2 0.03
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (72 bp):
GTGTTCCAAGAGAAACATGTTCAAAGGTTTCTTTTGTGTTTCAAGAGAAATAATTTCAAAGGTTT
TCTTTTT
Found at i:8740834 original size:65 final size:66
Alignment explanation
Indices: 8740756--8740895 Score: 178
Period size: 67 Copynumber: 2.1 Consensus size: 66
8740746 AGGTTTTTTG
* * *
8740756 TGTTTCAAGAGAAAACGAT-TTCAAAGGTT-T-TTTCAAGAGAAACTGTCTCCAGGGAGGCAAAA
1 TGTTTCAAGAG-AAAC-ATATTCAAAGGTTGTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
*
8740818 GAT
64 CAT
*
8740821 TGTTTCAAGAGAAACATATTCAAAGGTTGGTGTTTCAAGAGAAATTGTCTCAAGAGAGACAAAAC
1 TGTTTCAAGAGAAACATATTCAAAGGTT-GTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAAC
*
8740886 TT
65 AT
8740888 TGTTTCAA
1 TGTTTCAA
8740896 AAAGAAACTG
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
63 2 0.03
64 14 0.22
65 11 0.17
66 1 0.02
67 37 0.57
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (66 bp):
TGTTTCAAGAGAAACATATTCAAAGGTTGTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAACA
T
Found at i:8740927 original size:37 final size:37
Alignment explanation
Indices: 8740851--8740929 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
8740841 CAAAGGTTGG
* *
8740851 TGTTTCAAGAGAAATTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAAAGAAACTGTCTCAAGAGAGACAAAACTT
* *
8740888 TGTTTCAAAAAGAAACTGTCTCAAGGGAGACGAAA-TT
1 TGTTTC-AAAAGAAACTGTCTCAAGAGAGACAAAACTT
8740925 TGTTT
1 TGTTT
8740930 AATGTAAAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 13 0.35
38 24 0.65
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (37 bp):
TGTTTCAAAAGAAACTGTCTCAAGAGAGACAAAACTT
Found at i:8740968 original size:29 final size:30
Alignment explanation
Indices: 8740936--8740999 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
8740926 GTTTAATGTA
*
8740936 AAAC-ATATTCAAAGATTT-TGTTTCAAGGG
1 AAACTATATTCAAAG-TTTATGTTTCAAGAG
* *
8740965 AAACTGTTTTCAAAGTTTATGTTTCAAGAG
1 AAACTATATTCAAAGTTTATGTTTCAAGAG
8740995 AAACT
1 AAACT
8741000 GTCTCAAGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (30 bp):
AAACTATATTCAAAGTTTATGTTTCAAGAG
Found at i:8740979 original size:30 final size:30
Alignment explanation
Indices: 8740943--8741001 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
8740933 GTAAAACATA
*
8740943 TTCAAAGATTT-TGTTTCAAGGGAAACTGTT
1 TTCAAAG-TTTATGTTTCAAGAGAAACTGTT
8740973 TTCAAAGTTTATGTTTCAAGAGAAACTGT
1 TTCAAAGTTTATGTTTCAAGAGAAACTGT
8741002 CTCAAGGGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 3 0.11
30 24 0.89
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (30 bp):
TTCAAAGTTTATGTTTCAAGAGAAACTGTT
Found at i:8741041 original size:36 final size:36
Alignment explanation
Indices: 8740984--8741171 Score: 151
Period size: 36 Copynumber: 5.4 Consensus size: 36
8740974 TCAAAGTTTA
* * *
8740984 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
*
8741020 TGTTTCAAGGGAAAATATCTCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
** * * * *
8741056 CATTTCAAAGGAAA-TGTTTTC-A-A-TG-C----TT
1 TGTTTCAAGGGAAACT-ATCTCAAGAGAGACAAAATT
* * *
8741084 ATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 -TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TT
8741122 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
**
8741158 CATTTCAAGGGAAA
1 TGTTTCAAGGGAAA
8741172 TGTTTTCAAT
Statistics
Matches: 117, Mismatches: 23, Indels: 24
0.71 0.14 0.15
Matches are distributed among these distances:
28 2 0.02
29 13 0.11
30 2 0.02
32 2 0.02
33 2 0.02
34 1 0.01
35 2 0.02
36 60 0.51
37 31 0.26
38 2 0.02
ACGTcount: A:0.40, C:0.13, G:0.20, T:0.27
Consensus pattern (36 bp):
TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATT
Found at i:8741100 original size:131 final size:134
Alignment explanation
Indices: 8740821--8741102 Score: 313
Period size: 131 Copynumber: 2.1 Consensus size: 134
8740811 GGCAAAAGAT
* * *
8740821 TGTTTCAAGAGAAAC-ATATTCAAAGGTTGGTGTTTCAAGAGAAATTGTCTCAAGAGAGACAAAA
1 TGTTTCAAGAGAAACTGTATTCAAAGGTTGATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * * * ** *
8740885 CTTTGTTTCAAAAAGAAACTGTCTCAAGGGAGACGAAATTTGTTTAATGTAAAACATATTCAAAG
66 CTTTGTTTCAAAAAGAAAATATCTCAAGAGAGACAAAATTCATTTAAAGTAAAACATATTCAAAG
*
8740950 ATTT
131 ATTA
* * * *
8740954 TGTTTCAAGGGAAACTGTTTTCAAA-GTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA
1 TGTTTCAAGAGAAACTGTATTCAAAGGTTGATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
** * ** * *
8741018 -TTTGTTTC-AAGGGAAAATATCTCAAGAGAGACAAAATTCATTTCAAAG-GAAATGTTTTCAAT
66 CTTTGTTTCAAAAAGAAAATATCTCAAGAGAGACAAAATTCATTT-AAAGTAAAACATATTCAAA
*
8741080 GCTTA
130 GATTA
8741085 TGTTTCAAGAGAAACTGT
1 TGTTTCAAGAGAAACTGT
8741103 CTCAAGGGAG
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
131 56 0.46
132 11 0.09
133 49 0.40
134 7 0.06
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.31
Consensus pattern (134 bp):
TGTTTCAAGAGAAACTGTATTCAAAGGTTGATGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
CTTTGTTTCAAAAAGAAAATATCTCAAGAGAGACAAAATTCATTTAAAGTAAAACATATTCAAAG
ATTA
Found at i:8741136 original size:37 final size:37
Alignment explanation
Indices: 8741085--8741267 Score: 134
Period size: 37 Copynumber: 5.1 Consensus size: 37
8741075 TCAATGCTTA
* *
8741085 TGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
1 TGTTTCAAGGGAAACTATCTCAAGGGAGACAAAATTT
*
8741122 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAA-TT
1 TGTTTCAAGGGAAACTATCTCAAGGGAGACAAAATTT
** * * * *
8741158 CATTTCAAGGGAAA-TGTTTTCAA---TG-C----TTA
1 TGTTTCAAGGGAAACT-ATCTCAAGGGAGACAAAATTT
* *
8741187 TGTTTCTAGAGAAACTATCTCAAGGGAGACAAAATTTT
1 TGTTTCAAGGGAAACTATCTCAAGGGAGACAAAA-TTT
* * * *
8741225 CTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAATCT
1 -TGTTTCAAGGGAAACTATCTCAAGGGAGACAAAATTT
8741263 TGTTT
1 TGTTT
8741268 TAATAAAAAC
Statistics
Matches: 111, Mismatches: 22, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
29 16 0.14
30 1 0.01
32 2 0.02
33 2 0.02
35 1 0.01
36 19 0.17
37 36 0.32
38 4 0.04
39 30 0.27
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.31
Consensus pattern (37 bp):
TGTTTCAAGGGAAACTATCTCAAGGGAGACAAAATTT
Found at i:8741149 original size:102 final size:102
Alignment explanation
Indices: 8740956--8741260 Score: 495
Period size: 102 Copynumber: 3.0 Consensus size: 102
8740946 AAAGATTTTG
* *
8740956 TTTCAAGGGAAACTGTTTTCAAAGTTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TT
1 TTTCAAGGGAAA-TGTTTTCAATGCTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTT
*
8741020 TGTTTCAAGGGAAAATATCTCAAGAGAGACAAAATTCA
65 TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA
*
8741058 TTTCAAAGGAAATGTTTTCAATGCTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
1 TTTCAAGGGAAATGTTTTCAATGCTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
8741123 GTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA
66 GTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA
* *
8741160 TTTCAAGGGAAATGTTTTCAATGCTTATGTTTCTAGAGAAACTATCTCAAGGGAGACAAAATTTT
1 TTTCAAGGGAAATGTTTTCAATGCTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAA-TTT
* * *
8741225 CTGTTTCGAGGGAAACTATCTCAAGCGAGATAAAAT
65 -TGTTTCAAGGGAAACTATCTCAAGAGAGACAAAAT
8741261 CTTGTTTTAA
Statistics
Matches: 190, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
101 47 0.25
102 108 0.57
103 3 0.02
104 32 0.17
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.30
Consensus pattern (102 bp):
TTTCAAGGGAAATGTTTTCAATGCTTATGTTTCAAGAGAAACTGTCTCAAGGGAGACAAAATTTT
GTTTCAAGGGAAACTATCTCAAGAGAGACAAAATTCA
Found at i:8741313 original size:36 final size:36
Alignment explanation
Indices: 8741273--8741462 Score: 131
Period size: 36 Copynumber: 5.3 Consensus size: 36
8741263 TGTTTTAATA
*
8741273 AAAACAATCTTGAGGGAAATAAATCTTCTTTCGAGT
1 AAAACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
* ** * * *
8741309 AAAACAGTCTCAAGTGAGACAAAGTCTGT-TTT-AAG-
1 AAAACAATCTTGAGGGAAATAAA-TCT-TCTTTCAAGT
*
8741344 AATGACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
1 AA-AACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
* * ** * * * *
8741381 AAAATAGTCTCAAGTGAGACAAGGTCTGT-TTT-AAG-
1 AAAACAATCTTGAGGGAAATAA-ATCT-TCTTTCAAGT
*
8741416 AATGACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
1 AA-AACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
8741453 AAAACAATCT
1 AAAACAATCT
8741463 CAAGTGAGAC
Statistics
Matches: 109, Mismatches: 33, Indels: 24
0.66 0.20 0.14
Matches are distributed among these distances:
34 2 0.02
35 16 0.15
36 73 0.67
37 16 0.15
38 2 0.02
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29
Consensus pattern (36 bp):
AAAACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
Found at i:8741353 original size:72 final size:72
Alignment explanation
Indices: 8741243--8741475 Score: 367
Period size: 72 Copynumber: 3.2 Consensus size: 72
8741233 AGGGAAACTA
* * * * ** *
8741243 TCTCAAGCGAGATAAAATCTTGTTTTAATAAAAACAATCTTGAGGGAAATAAATCTTCTTTCGAG
1 TCTCAAGTGAGACAAAGTC-TGTTTTAAGAATGACAATCTTGAGGGAAATAAATCTTCTTTCAAG
8741308 TAAAACAG
65 TAAAACAG
8741316 TCTCAAGTGAGACAAAGTCTGTTTTAAGAATGACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
1 TCTCAAGTGAGACAAAGTCTGTTTTAAGAATGACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
*
8741381 AAAATAG
66 AAAACAG
*
8741388 TCTCAAGTGAGACAAGGTCTGTTTTAAGAATGACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
1 TCTCAAGTGAGACAAAGTCTGTTTTAAGAATGACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
*
8741453 AAAACAA
66 AAAACAG
8741460 TCTCAAGTGAGACAAA
1 TCTCAAGTGAGACAAA
8741476 TCATTTGTAT
Statistics
Matches: 148, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
72 132 0.89
73 16 0.11
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (72 bp):
TCTCAAGTGAGACAAAGTCTGTTTTAAGAATGACAATCTTGAGGGAAATAAATCTTCTTTCAAGT
AAAACAG
Found at i:8742728 original size:83 final size:87
Alignment explanation
Indices: 8742618--8742845 Score: 243
Period size: 95 Copynumber: 2.6 Consensus size: 87
8742608 TGGCTAGCTG
* *
8742618 TATCTATAAAGTCAGGGCGCTTT-ACCAATTGCTCTAGAGGGACAACTCAA-TAT-GTA-AAT-A
1 TATCCATAAAGTCGGGGCG-TTTAACCAATTGCTCTAGAGGGACAACTCAATTATAGTATAATCA
* *
8742678 CCTTTATCAGGTTAGCTGAATCT
65 CCTTTATCAGGCTAGCTGAATAT
*
8742701 TATCCATAAAGTCGGGGCGTTTAACCAATTGC-CTTAGAGGGACATCTCAAGCTTTATTGTATAG
1 TATCCATAAAGTCGGGGCGTTTAACCAATTGCTC-TAGAGGGACAACTC-A-----A-T-TATAG
*
8742765 TATAATCACCTTTATCAGGCTAGCTGGATAT
57 TATAATCACCTTTATCAGGCTAGCTGAATAT
* * *
8742796 TATCCATAAAGCCGGGGCGTTTAACCAATTGCTCTAGAGGTATAACTCAA
1 TATCCATAAAGTCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAA
8742846 GTTTTATTGT
Statistics
Matches: 120, Mismatches: 10, Indels: 24
0.78 0.06 0.16
Matches are distributed among these distances:
82 4 0.03
83 39 0.32
84 1 0.01
89 2 0.02
92 3 0.03
93 3 0.03
94 4 0.03
95 63 0.52
96 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (87 bp):
TATCCATAAAGTCGGGGCGTTTAACCAATTGCTCTAGAGGGACAACTCAATTATAGTATAATCAC
CTTTATCAGGCTAGCTGAATAT
Found at i:8742845 original size:95 final size:95
Alignment explanation
Indices: 8742677--8742856 Score: 272
Period size: 95 Copynumber: 1.9 Consensus size: 95
8742667 ATATGTAAAT
* * *
8742677 ACCTTTATCAGGTTAGCTGAATCTTATCCATAAAGTCGGGGCGTTTAACCAATTGCCTTAGAGGG
1 ACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGGGCGTTTAACCAATTGCCTTAGAGGG
*
8742742 ACATCTCAAGCTTTATTGTATAGTATAATC
66 ACAACTCAAGCTTTATTGTATAGTATAATC
*
8742772 ACCTTTATCAGGCTAGCTGGATATTATCCATAAAGCCGGGGCGTTTAACCAATTG-CTCTAGAGG
1 ACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGGGCGTTTAACCAATTGCCT-TAGAGG
* * *
8742836 TATAACTCAAGTTTTATTGTA
65 GACAACTCAAGCTTTATTGTA
8742857 AATAATATTA
Statistics
Matches: 76, Mismatches: 8, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
94 2 0.03
95 74 0.97
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (95 bp):
ACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGGGCGTTTAACCAATTGCCTTAGAGGG
ACAACTCAAGCTTTATTGTATAGTATAATC
Found at i:8746939 original size:36 final size:38
Alignment explanation
Indices: 8746877--8746947 Score: 110
Period size: 36 Copynumber: 1.9 Consensus size: 38
8746867 AAGATAAAAC
*
8746877 AAAGATAAAGTAAAGAAAATAAATAAATAAAATAAGTA
1 AAAGATAAAGTAAAGAAAATAAATAAAGAAAATAAGTA
*
8746915 AAAGGTAAA-TAAAG-AAATAAATAAAGAAAATAA
1 AAAGATAAAGTAAAGAAAATAAATAAAGAAAATAA
8746948 AATTAAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 18 0.58
37 5 0.16
38 8 0.26
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (38 bp):
AAAGATAAAGTAAAGAAAATAAATAAAGAAAATAAGTA
Found at i:8747037 original size:2 final size:2
Alignment explanation
Indices: 8747032--8747058 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8747022 ATATATAACA
8747032 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8747059 ATAAGAGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8747122 original size:22 final size:21
Alignment explanation
Indices: 8747073--8747126 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
8747063 GAGGGAAAAT
*
8747073 AAAATAATAATAATAAATCCA
1 AAAATAATAATAATAAAACCA
**
8747094 AAGAATAATAATAATAAAAGGA
1 AA-AATAATAATAATAAAACCA
8747116 ATAAATAATAA
1 A-AAATAATAA
8747127 ATGAAACAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.07
22 25 0.89
23 1 0.04
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.22
Consensus pattern (21 bp):
AAAATAATAATAATAAAACCA
Found at i:8748105 original size:7 final size:7
Alignment explanation
Indices: 8748095--8748148 Score: 51
Period size: 7 Copynumber: 8.0 Consensus size: 7
8748085 ATATAGTTGA
*
8748095 ATATATT
1 ATATAAT
8748102 ATAT-A-
1 ATATAAT
8748107 ATATAAT
1 ATATAAT
*
8748114 TTATAAT
1 ATATAAT
8748121 ATA-AAT
1 ATATAAT
*
8748127 ATATATT
1 ATATAAT
8748134 ATATAAT
1 ATATAAT
8748141 ATAGTAAT
1 ATA-TAAT
8748149 GTTTGAAGGA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
5 4 0.11
6 7 0.18
7 23 0.61
8 4 0.11
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (7 bp):
ATATAAT
Found at i:8749802 original size:110 final size:110
Alignment explanation
Indices: 8749671--8749891 Score: 433
Period size: 110 Copynumber: 2.0 Consensus size: 110
8749661 GCTAAGAAAA
8749671 TAAACTAAACATTCTTATAAAAACAACTTTACTCGTACAAAATCAAATATGTAAAATAAGCTAGA
1 TAAACTAAACATTCTTATAAAAACAACTTTACTCGTACAAAATCAAATATGTAAAATAAGCTAGA
8749736 TAATTAATTAAATACAAGACAAAATAAAATAAACATGAATTTTAG
66 TAATTAATTAAATACAAGACAAAATAAAATAAACATGAATTTTAG
*
8749781 TAAATTAAACATTCTTATAAAAACAACTTTACTCGTACAAAATCAAATATGTAAAATAAGCTAGA
1 TAAACTAAACATTCTTATAAAAACAACTTTACTCGTACAAAATCAAATATGTAAAATAAGCTAGA
8749846 TAATTAATTAAATACAAGACAAAATAAAATAAACATGAATTTTAG
66 TAATTAATTAAATACAAGACAAAATAAAATAAACATGAATTTTAG
8749891 T
1 T
8749892 TAGTATTTAG
Statistics
Matches: 110, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
110 110 1.00
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.29
Consensus pattern (110 bp):
TAAACTAAACATTCTTATAAAAACAACTTTACTCGTACAAAATCAAATATGTAAAATAAGCTAGA
TAATTAATTAAATACAAGACAAAATAAAATAAACATGAATTTTAG
Found at i:8750517 original size:16 final size:17
Alignment explanation
Indices: 8750455--8750539 Score: 102
Period size: 17 Copynumber: 5.1 Consensus size: 17
8750445 GTATTCAATA
*
8750455 AAGCATGTTGTTCATTT
1 AAGCATGTAGTTCATTT
8750472 AAGCATGTA-TTGCATTT
1 AAGCATGTAGTT-CATTT
*
8750489 AAGCATCTAGTTCATTT
1 AAGCATGTAGTTCATTT
*
8750506 AAG-AAGTAGTTCATTT
1 AAGCATGTAGTTCATTT
* *
8750522 AAGCATTTAGATCATTT
1 AAGCATGTAGTTCATTT
8750539 A
1 A
8750540 GTAAGCTACT
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
16 16 0.28
17 40 0.69
18 2 0.03
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (17 bp):
AAGCATGTAGTTCATTT
Found at i:8750526 original size:33 final size:34
Alignment explanation
Indices: 8750455--8750539 Score: 102
Period size: 33 Copynumber: 2.5 Consensus size: 34
8750445 GTATTCAATA
* * *
8750455 AAGCATGTTGTTCATTTAAGCATGTATTGCATTT
1 AAGCATCTAGTTCATTTAAGCAAGTATTGCATTT
8750489 AAGCATCTAGTTCATTTAAG-AAGTAGTT-CATTT
1 AAGCATCTAGTTCATTTAAGCAAGTA-TTGCATTT
* *
8750522 AAGCATTTAGATCATTTA
1 AAGCATCTAGTTCATTTA
8750540 GTAAGCTACT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
33 25 0.56
34 20 0.44
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (34 bp):
AAGCATCTAGTTCATTTAAGCAAGTATTGCATTT
Found at i:8750600 original size:17 final size:17
Alignment explanation
Indices: 8750580--8750632 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
8750570 CTAATAAAGT
8750580 TAGTTCATTAATCAAAC
1 TAGTTCATTAATCAAAC
* *
8750597 TAGTTCATTTATTAAAC
1 TAGTTCATTAATCAAAC
* *
8750614 TAGTGCATTAATCTAAC
1 TAGTTCATTAATCAAAC
8750631 TA
1 TA
8750633 ACTCTTTAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.40
Consensus pattern (17 bp):
TAGTTCATTAATCAAAC
Found at i:8750684 original size:31 final size:32
Alignment explanation
Indices: 8750636--8750695 Score: 113
Period size: 31 Copynumber: 1.9 Consensus size: 32
8750626 CTAACTAACT
8750636 CTTTAATTGTTTTTCATGCATATTTCATTAGA
1 CTTTAATTGTTTTTCATGCATATTTCATTAGA
8750668 CTTTAATTG-TTTTCATGCATATTTCATT
1 CTTTAATTGTTTTTCATGCATATTTCATT
8750696 TAAGTTTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 19 0.68
32 9 0.32
ACGTcount: A:0.23, C:0.13, G:0.08, T:0.55
Consensus pattern (32 bp):
CTTTAATTGTTTTTCATGCATATTTCATTAGA
Found at i:8754551 original size:35 final size:35
Alignment explanation
Indices: 8754516--8754650 Score: 182
Period size: 35 Copynumber: 3.8 Consensus size: 35
8754506 TAAGAAGAAT
*
8754516 GAAAGGAAGCATCGACACTTTCGATTCAAGTGAAT
1 GAAAGGAAGCATCGACACTTTCGATTCAAGTGAAC
* *
8754551 GGAAGGAAGCATC-AGCACTTTCGATTCAAGAAGAAC
1 GAAAGGAAGCATCGA-CACTTTCGATTCAAG-TGAAC
*
8754587 GAAAGGAAGCATCGATACTTTCGATTCAAGTGAAC
1 GAAAGGAAGCATCGACACTTTCGATTCAAGTGAAC
* **
8754622 GGAAGGAAGCATAAACACTTTCGATTCAA
1 GAAAGGAAGCATCGACACTTTCGATTCAA
8754651 TTGTTCATCT
Statistics
Matches: 87, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
34 1 0.01
35 56 0.64
36 29 0.33
37 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.21
Consensus pattern (35 bp):
GAAAGGAAGCATCGACACTTTCGATTCAAGTGAAC
Found at i:8754626 original size:71 final size:71
Alignment explanation
Indices: 8754507--8754650 Score: 243
Period size: 71 Copynumber: 2.0 Consensus size: 71
8754497 GAAGGTGAAT
* * * *
8754507 AAGAAGAATGAAAGGAAGCATCGACACTTTCGATTCAAGTGAATGGAAGGAAGCATCAGCACTTT
1 AAGAAGAACGAAAGGAAGCATCGACACTTTCGATTCAAGTGAACGGAAGGAAGCATAAACACTTT
8754572 CGATTC
66 CGATTC
*
8754578 AAGAAGAACGAAAGGAAGCATCGATACTTTCGATTCAAGTGAACGGAAGGAAGCATAAACACTTT
1 AAGAAGAACGAAAGGAAGCATCGACACTTTCGATTCAAGTGAACGGAAGGAAGCATAAACACTTT
8754643 CGATTC
66 CGATTC
8754649 AA
1 AA
8754651 TTGTTCATCT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.40, C:0.17, G:0.23, T:0.20
Consensus pattern (71 bp):
AAGAAGAACGAAAGGAAGCATCGACACTTTCGATTCAAGTGAACGGAAGGAAGCATAAACACTTT
CGATTC
Found at i:8762466 original size:30 final size:29
Alignment explanation
Indices: 8762373--8762485 Score: 88
Period size: 30 Copynumber: 3.8 Consensus size: 29
8762363 GGTTAGTGAA
*
8762373 CAAAATGTAAATTTT-AAAAGTTTAGTAGC
1 CAAAAAGTAAATTTTCAAAAGTTTAG-AGC
** * *
8762402 CAAAGAA-TAAAGTTTGGAAAATTTTAGGGTC
1 CAAA-AAGTAAA-TTTTCAAAAGTTTAGAG-C
*
8762433 CAAAAAGGAAATTTTCAAAAGTTTAGAGAC
1 CAAAAAGTAAATTTTCAAAAGTTTAGAG-C
*
8762463 C-AAAAGTTTAATTTTCAAAAGTT
1 CAAAAAG-TAAATTTTCAAAAGTT
8762486 ATGTATTTTG
Statistics
Matches: 66, Mismatches: 12, Indels: 11
0.74 0.13 0.12
Matches are distributed among these distances:
29 13 0.20
30 36 0.55
31 17 0.26
ACGTcount: A:0.45, C:0.08, G:0.16, T:0.31
Consensus pattern (29 bp):
CAAAAAGTAAATTTTCAAAAGTTTAGAGC
Found at i:8763229 original size:19 final size:18
Alignment explanation
Indices: 8763181--8763232 Score: 86
Period size: 18 Copynumber: 2.8 Consensus size: 18
8763171 TTCCCAAATT
8763181 TTAGGGTTTATGAATATA
1 TTAGGGTTTATGAATATA
*
8763199 TTAGGGTTTATGAATATG
1 TTAGGGTTTATGAATATA
8763217 TTAGGGTTTTATGAAT
1 TTAGGG-TTTATGAAT
8763233 TGATGATGGA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 23 0.72
19 9 0.28
ACGTcount: A:0.29, C:0.00, G:0.25, T:0.46
Consensus pattern (18 bp):
TTAGGGTTTATGAATATA
Found at i:8763695 original size:19 final size:20
Alignment explanation
Indices: 8763646--8763697 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
8763636 TTGATGTACT
*
8763646 ATGTTGGAAATTAATGTTAGA
1 ATGTT-GAAATTGATGTTAGA
*
8763667 GTGTTGAAATTGATGTTAGA
1 ATGTTGAAATTGATGTTAGA
8763687 ATG-TGAAATTG
1 ATGTTGAAATTG
8763698 GTCCATTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 8 0.29
20 16 0.57
21 4 0.14
ACGTcount: A:0.35, C:0.00, G:0.27, T:0.38
Consensus pattern (20 bp):
ATGTTGAAATTGATGTTAGA
Found at i:8765497 original size:65 final size:65
Alignment explanation
Indices: 8765418--8765558 Score: 191
Period size: 65 Copynumber: 2.2 Consensus size: 65
8765408 GCACTAAGAG
*
8765418 TGCA-TCGATG-TTTCA-AAATAGCCAGAGTGCATCGATGCATGGCT-GGTGCATCGATGCATCA
1 TGCATTCGATGTTTTCATAAA-AGCCACAGTGCATCGATGCATGG-TAGGTGCATCGATGCATCA
8765479 AA
64 AA
* * * *
8765481 TGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGATGCATGGTATGTGCATCGATGCATGAAA
1 TGCATTCGATGTTTTCATAAAAGCCACAGTGCATCGATGCATGGTAGGTGCATCGATGCATCAAA
8765546 TGCATTCGATGTT
1 TGCATTCGATGTT
8765559 CAATTTAATT
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
63 4 0.06
64 7 0.10
65 55 0.80
66 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30
Consensus pattern (65 bp):
TGCATTCGATGTTTTCATAAAAGCCACAGTGCATCGATGCATGGTAGGTGCATCGATGCATCAAA
Found at i:8765597 original size:65 final size:63
Alignment explanation
Indices: 8765443--8765605 Score: 197
Period size: 65 Copynumber: 2.5 Consensus size: 63
8765433 AAATAGCCAG
*
8765443 AGTGCATCGATGCATGGCTGGTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTC
1 AGTGCATCGATGCATGGTTGGTGCATCGATGCATCAAATGCATTCGATG-TTTCATAAAAT-CTC
* **
8765508 AGTGCATCGATGCATGGTAT-GTGCATCGATGCATGAAATGCATTCGATG-TTCAATTTAAT-TC
1 AGTGCATCGATGCATGGT-TGGTGCATCGATGCATCAAATGCATTCGATGTTTC-ATAAAATCTC
*
8765570 ATGATGCATCGATGCATGGATTGGTGCATCGGTGCA
1 A-G-TGCATCGATGCATGG-TTGGTGCATCGATGCA
8765606 CACTCTGAAA
Statistics
Matches: 87, Mismatches: 5, Indels: 12
0.84 0.05 0.12
Matches are distributed among these distances:
62 3 0.03
63 4 0.05
64 21 0.24
65 58 0.67
66 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (63 bp):
AGTGCATCGATGCATGGTTGGTGCATCGATGCATCAAATGCATTCGATGTTTCATAAAATCTC
Found at i:8768264 original size:23 final size:22
Alignment explanation
Indices: 8768234--8768313 Score: 99
Period size: 22 Copynumber: 3.6 Consensus size: 22
8768224 GCATGGCCTT
8768234 GTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
* * *
8768256 CGTGCATCGGTGCACCTTC-ATG
1 -GTGCATCGATGCACATTCAAGG
*
8768278 GTGTATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTCAAGG
*
8768300 ATGCATCGATGCAC
1 GTGCATCGATGCAC
8768314 TGCTAGGTGT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
21 15 0.32
22 16 0.34
23 16 0.34
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (22 bp):
GTGCATCGATGCACATTCAAGG
Found at i:8768288 original size:44 final size:42
Alignment explanation
Indices: 8768212--8768332 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 42
8768202 AAAACCCGAT
* *
8768212 GGATGCATCGATGCA-TGGCCT-TGTGCATCGATGCACATTCAA
1 GGATGCATCGATGCACT-G-CTAGGTGTATCGATGCACATTCAA
* * *
8768254 GGCGTGCATCGGTGCACCTTC-ATGGTGTATCGATGCACATTCAA
1 GG-ATGCATCGATGCA-CTGCTA-GGTGTATCGATGCACATTCAA
8768298 GGATGCATCGATGCACTGCTAGGTGTATCGATGCA
1 GGATGCATCGATGCACTGCTAGGTGTATCGATGCA
8768333 TGAAGCACAA
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
42 19 0.29
43 24 0.37
44 21 0.32
45 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.26
Consensus pattern (42 bp):
GGATGCATCGATGCACTGCTAGGTGTATCGATGCACATTCAA
Found at i:8768290 original size:21 final size:21
Alignment explanation
Indices: 8768234--8768313 Score: 88
Period size: 21 Copynumber: 3.7 Consensus size: 21
8768224 GCATGGCCTT
*
8768234 GTGCATCGATGCACATTCAAGG
1 GTGCATCGATGCACATTC-ATG
* *
8768256 CGTGCATCGGTGCACCTTCATG
1 -GTGCATCGATGCACATTCATG
* *
8768278 GTGTATCGATGCACATTCAAG
1 GTGCATCGATGCACATTCATG
8768299 GATGCATCGATGCAC
1 G-TGCATCGATGCAC
8768314 TGCTAGGTGT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
21 18 0.38
22 14 0.29
23 16 0.33
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (21 bp):
GTGCATCGATGCACATTCATG
Found at i:8768329 original size:20 final size:21
Alignment explanation
Indices: 8768238--8768332 Score: 75
Period size: 21 Copynumber: 4.4 Consensus size: 21
8768228 GGCCTTGTGC
* *
8768238 ATCGATGCACATTCAAGGCGTGC
1 ATCGATGCACATGCAA-G-GTGT
* * * *
8768261 ATCGGTGCACCTTCATGGTGT
1 ATCGATGCACATGCAAGGTGT
* *
8768282 ATCGATGCACATTCAAGGATGC
1 ATCGATGCACATGCAAGG-TGT
*
8768304 ATCGATGCAC-TGCTAGGTGT
1 ATCGATGCACATGCAAGGTGT
8768324 ATCGATGCA
1 ATCGATGCA
8768333 TGAAGCACAA
Statistics
Matches: 60, Mismatches: 11, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
20 11 0.18
21 23 0.38
22 13 0.22
23 13 0.22
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.26
Consensus pattern (21 bp):
ATCGATGCACATGCAAGGTGT
Found at i:8772046 original size:64 final size:64
Alignment explanation
Indices: 8771948--8772139 Score: 212
Period size: 64 Copynumber: 3.0 Consensus size: 64
8771938 ATGCATCAAA
* * * *
8771948 CCATGCATCGATGCACCTATGAT-TTAATT-GAACATCGAATGCATTTCATGCACCGATGCACTC
1 CCATGCATCGATGCACC-AGGATATT-TTTCAAACATCGAATGCATTTCATGCATCGATGCACTC
8772011 T
64 T
* **
8772012 CCATGCATCGATGCACTC-GGA-ATATTTTCAAACATCGAATGCATTTGATGCATCGATGCACAA
1 CCATGCATCGATGCAC-CAGGATAT-TTTTCAAACATCGAATGCATTTCATGCATCGATGCACTC
*
8772075 G
64 T
* * * *
8772076 CCATGCATTGATGCACCAGGCTATTTTTCAAACATCGAATGCACTTCATGCATCGGTGCACTCT
1 CCATGCATCGATGCACCAGGATATTTTTCAAACATCGAATGCATTTCATGCATCGATGCACTCT
8772140 TAGTGCACCG
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
63 6 0.06
64 97 0.92
65 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (64 bp):
CCATGCATCGATGCACCAGGATATTTTTCAAACATCGAATGCATTTCATGCATCGATGCACTCT
Found at i:8777980 original size:24 final size:22
Alignment explanation
Indices: 8777952--8778032 Score: 85
Period size: 24 Copynumber: 3.6 Consensus size: 22
8777942 CACTTAACAA
8777952 TGCATCGATGCATCCCTTTGAATG
1 TGCATCGATGCAT-CC-TTGAATG
*
8777976 TGCATCGATGCATCC--GCATG
1 TGCATCGATGCATCCTTGAATG
* *
8777996 ATGCACCGATGCATGCCTTGAATA
1 -TGCATCGATGCAT-CCTTGAATG
8778020 TGCATCGATGCAT
1 TGCATCGATGCAT
8778033 AAGACCATGC
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
20 4 0.08
21 12 0.25
22 2 0.04
23 14 0.29
24 16 0.33
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (22 bp):
TGCATCGATGCATCCTTGAATG
Found at i:8780755 original size:64 final size:65
Alignment explanation
Indices: 8780687--8780869 Score: 232
Period size: 64 Copynumber: 2.9 Consensus size: 65
8780677 GATTTAATTG
*
8780687 AACATCGAATGCATTTCATGCACCGATGCACTCTCCATGCATCGATGCACTC-GGA-ATATTTTC
1 AACATCGAATGCATTTCATGCATCGATGCACTCTCCATGCATCGATGCACTCAGGATAT-TTTTC
8780750 A
65 A
* *** *
8780751 AACATCGAATGCATTTGATGCATCGATGCACAAGCCATGCATCGATGCAC-CAGGCTATTTTTCA
1 AACATCGAATGCATTTCATGCATCGATGCACTCTCCATGCATCGATGCACTCAGGATATTTTTCA
* * *
8780815 AACATCGAATGCACTTCATGCATCGATGCACTCT-TAGTGCACCGATGCACT-AGGA
1 AACATCGAATGCATTTCATGCATCGATGCACTCTCCA-TGCATCGATGCACTCAGGA
8780870 GTCCAACGGT
Statistics
Matches: 101, Mismatches: 14, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
63 2 0.02
64 97 0.96
65 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (65 bp):
AACATCGAATGCATTTCATGCATCGATGCACTCTCCATGCATCGATGCACTCAGGATATTTTTCA
Found at i:8780845 original size:17 final size:19
Alignment explanation
Indices: 8780817--8780865 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
8780807 ATTTTTCAAA
8780817 CATCGAATGCACT-TCA-TG
1 CATCG-ATGCACTCTCAGTG
*
8780835 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTCAGTG
*
8780854 CACCGATGCACT
1 CATCGATGCACT
8780866 AGGAGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTCAGTG
Found at i:8782062 original size:22 final size:21
Alignment explanation
Indices: 8782020--8782059 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8782010 GAGTTTATTT
*
8782020 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
8782041 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
8782060 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Found at i:8783702 original size:2 final size:2
Alignment explanation
Indices: 8783695--8783735 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
8783685 TTTAGCCATA
8783695 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8783736 ATAAATAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8784032 original size:29 final size:30
Alignment explanation
Indices: 8783999--8784056 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
8783989 ATATTTCTAA
8783999 ATAAATAAATATTTTATTT-ATAAATATAT
1 ATAAATAAATATTTTATTTCATAAATATAT
* * *
8784028 ATAAATTAATATTTTTTTTCATAATTATA
1 ATAAATAAATATTTTATTTCATAAATATA
8784057 ATTTTGAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 17 0.68
30 8 0.32
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (30 bp):
ATAAATAAATATTTTATTTCATAAATATAT
Found at i:8792831 original size:22 final size:22
Alignment explanation
Indices: 8792799--8792857 Score: 91
Period size: 22 Copynumber: 2.7 Consensus size: 22
8792789 ACATCTACAC
8792799 TCTTTTCAAAGATGATAGATTA
1 TCTTTTCAAAGATGATAGATTA
* *
8792821 TCTTTTTAAAGATGATAGATTT
1 TCTTTTCAAAGATGATAGATTA
*
8792843 TCTTTTCAAAAATGA
1 TCTTTTCAAAGATGA
8792858 AAGCTTTATT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (22 bp):
TCTTTTCAAAGATGATAGATTA
Found at i:8793656 original size:73 final size:73
Alignment explanation
Indices: 8793537--8793778 Score: 396
Period size: 73 Copynumber: 3.3 Consensus size: 73
8793527 TTCCCACATT
*
8793537 TGTAAGACCTACAGTGCATGACGTTTTCAAAAAG-CTTCCGGGAGCTTTTTGATCTTAAAGCCTC
1 TGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTT-CGGGAGCTTTTTGATCTTAAAGCCTC
8793601 AGGGTCATC
65 AGGGTCATC
* * * *
8793610 TGTAAGACCTACAGTGCATGATGTTATCAAAAAGCCTTCAGAAGCTTTTTGATCTTATAGCCTCA
1 TGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGCCTCA
8793675 GGGTCATC
66 GGGTCATC
8793683 TGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGCCTCA
1 TGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGCCTCA
8793748 GGGTCATC
66 GGGTCATC
* * *
8793756 TGTAAGCCCTACAATGCAAGATG
1 TGTAAGACCTACAGTGCATGATG
8793779 ATAAGACATC
Statistics
Matches: 156, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
73 153 0.98
74 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (73 bp):
TGTAAGACCTACAGTGCATGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTGATCTTAAAGCCTCA
GGGTCATC
Found at i:8794293 original size:109 final size:112
Alignment explanation
Indices: 8794154--8794356 Score: 322
Period size: 113 Copynumber: 1.8 Consensus size: 112
8794144 CTCTTTTGAA
* * *
8794154 GATCAGCATTTCCAGAAGGAGTTCATAATGAGAATAACTCATCTG-A-AA-AAGAAGAAGTTCAT
1 GATCAACATTTCCAGAACGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCAT
*
8794216 AATGAGAAGAACTTGTTCAACTTTTTGCTTGAATTCATCACTCGATG
66 AATAAGAAGAACTTGTTCAACTTTTTGCTTGAATTCATCACTCGATG
**
8794263 GATCAACATTTCCAGGTCGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
1 GATCAACATTTCCAGAACGAGTTCATAATGAGAAGAACTCATCTGAAGAA-GAAGAAGAAGTTCA
8794328 TAATAAGAAGAACTTGTTCAACTTTTTGC
65 TAATAAGAAGAACTTGTTCAACTTTTTGC
8794357 ATGACTCTAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
109 40 0.48
110 1 0.01
111 2 0.02
113 41 0.49
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.28
Consensus pattern (112 bp):
GATCAACATTTCCAGAACGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAGAAGAAGTTCAT
AATAAGAAGAACTTGTTCAACTTTTTGCTTGAATTCATCACTCGATG
Found at i:8794746 original size:137 final size:138
Alignment explanation
Indices: 8794425--8794782 Score: 488
Period size: 139 Copynumber: 2.6 Consensus size: 138
8794415 CAGCAGAGCC
* * * *
8794425 ATTTCCAGAAAGAGTTCATAATGAGAAGAACTTATCTAAAGATGAAGAAGAAGTTCATAATGAGA
1 ATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAA-AAGTTCATAATGAGA
* ** * * * *
8794490 AGAATTTGTTTGACCTTATCTTGATTCATCACCTATGAAGTTGTATGAAAGAAGAACCTCACTTG
65 AGAACTTGTTCAACCTTATCTTAATTCATCACATATGAAGTTGAATCAAAGAAGAACCTCACTTG
8794555 AGGATCAAT
130 AGGATCAAT
* *
8794564 ATTTTCAG-AGGAAGTTCATAATGAGAAGAACTCATCTGAATAGGAAGAGAAAGTTCATAATGAG
1 ATTTCCAGAAGG-AGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGA-AAAGTTCATAATGAG
* * * *
8794628 AAGAACTTGTTCAACCTTGTCTTAATTCATCACATATGAAGTTGAATCAACG-A-CACCTCTCTT
64 AAGAACTTGTTCAACCTTATCTTAATTCATCACATATGAAGTTGAATCAAAGAAGAACCTCACTT
8794691 GAGGATCAAT
129 GAGGATCAAT
* *
8794701 ATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAAAATTTCATAATGAGT
1 ATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAG-AAAAGTTCATAATGAGA
8794766 AGAACTTGTTCAACCTT
65 AGAACTTGTTCAACCTT
8794783 TTGCTAGATT
Statistics
Matches: 194, Mismatches: 21, Indels: 10
0.86 0.09 0.04
Matches are distributed among these distances:
137 90 0.46
138 7 0.04
139 96 0.49
140 1 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (138 bp):
ATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAAAGTTCATAATGAGAA
GAACTTGTTCAACCTTATCTTAATTCATCACATATGAAGTTGAATCAAAGAAGAACCTCACTTGA
GGATCAAT
Found at i:8794832 original size:137 final size:135
Alignment explanation
Indices: 8794425--8794815 Score: 437
Period size: 137 Copynumber: 2.8 Consensus size: 135
8794415 CAGCAGAGCC
* * * * *
8794425 ATTTCCAGAAAGAGTTCATAATGAGAAGAACTTATCTAAAGATGAAGAAGAAGTTCATAATGAGA
1 ATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAAAAGTTCATAATGAGA
* ** * ** * * *
8794490 AGAATTTGTTTGACCTTATCTTGATTCATCACCTATGAAGTTGTATGAAAGAAGAACCTCACTTG
66 AGAACTTGTTCAACCTTATCTAGATTCATCA-C-A-GAAGAAG-ATGGAATAACAACCTCACTTG
8794555 AGGATCAAT
127 AGGATCAAT
* * *
8794564 ATTTTCAG-AGGAAGTTCATAATGAGAAGAACTCATCTGAATAGGAAGAGAAAGTTCATAATGAG
1 ATTTCCAGAAGG-AGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAAAAGTTCATAATGAG
* * * * *
8794628 AAGAACTTGTTCAACCTTGTCTTA-ATTCATCACATATGAAG-TTGAATCAACGACACCTCTCTT
65 AAGAACTTGTTCAACCTTATC-TAGATTCATCACAGAAGAAGATGGAAT-AAC-A-ACCTCACTT
8794691 GAGGATCAAT
126 GAGGATCAAT
* *
8794701 ATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAAAATTTCATAATGAGT
1 ATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAAAAGTTCATAATGAGA
*
8794766 AGAACTTGTTCAACCTTTTGCTAGATTTCATCACAGAAGAAGATGGAATA
66 AGAACTTGTTCAACCTTAT-CTAGA-TTCATCACAGAAGAAGATGGAATA
8794816 TCATTCCCAG
Statistics
Matches: 211, Mismatches: 31, Indels: 20
0.81 0.12 0.08
Matches are distributed among these distances:
134 3 0.01
135 2 0.01
136 4 0.02
137 95 0.45
138 8 0.04
139 93 0.44
140 6 0.03
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (135 bp):
ATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAAAAGTTCATAATGAGA
AGAACTTGTTCAACCTTATCTAGATTCATCACAGAAGAAGATGGAATAACAACCTCACTTGAGGA
TCAAT
Found at i:8795300 original size:44 final size:44
Alignment explanation
Indices: 8795185--8795293 Score: 182
Period size: 44 Copynumber: 2.5 Consensus size: 44
8795175 ATTCTAACAG
**
8795185 CTCCACGTTGCATTTCCAGTAATTTCCATCAGCTGCAGCAGCCC
1 CTCCACGCAGCATTTCCAGTAATTTCCATCAGCTGCAGCAGCCC
* *
8795229 CTCCACGCAGCATTTCCAGCAATTTCCATCAGCTGCAGCAGCCT
1 CTCCACGCAGCATTTCCAGTAATTTCCATCAGCTGCAGCAGCCC
8795273 CTCCACGCAGCATTTCCAGTA
1 CTCCACGCAGCATTTCCAGTA
8795294 GCTTCCAGCC
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 60 1.00
ACGTcount: A:0.22, C:0.38, G:0.16, T:0.25
Consensus pattern (44 bp):
CTCCACGCAGCATTTCCAGTAATTTCCATCAGCTGCAGCAGCCC
Found at i:8796801 original size:20 final size:19
Alignment explanation
Indices: 8796776--8796817 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
8796766 CTATTTTATA
8796776 AATTATATATTAATTGTTTT
1 AATTATATATTAATT-TTTT
* *
8796796 AATTATTTATTTATTTTTT
1 AATTATATATTAATTTTTT
8796815 AAT
1 AAT
8796818 ATCGAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
AATTATATATTAATTTTTT
Found at i:8796809 original size:119 final size:117
Alignment explanation
Indices: 8796672--8796908 Score: 298
Period size: 120 Copynumber: 2.0 Consensus size: 117
8796662 ATTTTAATCA
* * * *
8796672 TGTTTTAATATTTATTTATTTTTCAATAT-TAAG-AAAGGGCAGTCTTAAAACAACTGGATGTCC
1 TGTTTTAATATTTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGT-C
* *
8796735 ATTTTCTGATATTTTTAAATAAATAAATATCCTATTTTATAAATTATATATTAAT
65 ATTTTCTGATATTTCTAAATAAATAAATATCCTA-TTTATAAA-TATATATAAAT
* * ** *
8796790 TGTTTTAATTATTTATTTATTTTTTAATATCGAAGAAAAGAGCTGTCTTAAGGCACCTAGAAGTC
1 TGTTTTAA-TATTTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGTC
* **
8796855 TTTTTCTGATATTTCTAAATAAATAAATATTTTATTTATAAATATATATAAAT
65 ATTTTCTGATATTTCTAAATAAATAAATATCCTATTTATAAATATATATAAAT
8796908 T
1 T
8796909 AATATTTTTT
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
118 19 0.19
119 28 0.27
120 34 0.33
121 21 0.21
ACGTcount: A:0.37, C:0.08, G:0.09, T:0.46
Consensus pattern (117 bp):
TGTTTTAATATTTATTTATTTTTCAATATCGAAGAAAAGAGCAGTCTTAAAACAACTAGAAGTCA
TTTTCTGATATTTCTAAATAAATAAATATCCTATTTATAAATATATATAAAT
Found at i:8796905 original size:29 final size:29
Alignment explanation
Indices: 8796873--8796929 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
8796863 ATATTTCTAA
8796873 ATAAATAAATATTTTATTT-ATAAATATAT
1 ATAAATAAATATTTT-TTTCATAAATATAT
* *
8796902 ATAAATTAATATTTTTTTCATAATTATA
1 ATAAATAAATATTTTTTTCATAAATATA
8796930 AATTTGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 3 0.12
29 22 0.88
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (29 bp):
ATAAATAAATATTTTTTTCATAAATATAT
Found at i:8799046 original size:19 final size:19
Alignment explanation
Indices: 8799022--8799073 Score: 86
Period size: 19 Copynumber: 2.7 Consensus size: 19
8799012 AATAGCCAGA
*
8799022 GTGCATCGATGCATGGTTG
1 GTGCATCGATGCATGGCTG
*
8799041 GTGCATCAATGCATGGCTG
1 GTGCATCGATGCATGGCTG
8799060 GTGCATCGATGCAT
1 GTGCATCGATGCAT
8799074 CAAATGTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.19, C:0.19, G:0.33, T:0.29
Consensus pattern (19 bp):
GTGCATCGATGCATGGCTG
Found at i:8799129 original size:84 final size:83
Alignment explanation
Indices: 8798977--8799157 Score: 224
Period size: 84 Copynumber: 2.2 Consensus size: 83
8798967 TGGACCCTTA
*
8798977 GTGCATCGATGCATCAAGTGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATGGTTGG
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATGGTTGG
8799042 TGCATCAATGCATGGCT-G
66 TGCATCAATGCATGG-TAG
* * * **
8799060 GTGCATCGATGCATCAAATGTATTTGATGTTTTCATAAA-ATCCTTAGTGCATCGATGCATGGTA
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCA-AAATAGCCAGAGTGCATCGATGCATGGT-
* * *
8799124 T-GTGCATCGATGCATTGTAT
63 TGGTGCATCAATGCATGGTAG
8799144 GTGCATCGATGCAT
1 GTGCATCGATGCAT
8799158 GGTATGTGCA
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
83 27 0.32
84 54 0.64
85 4 0.05
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (83 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCAAAATAGCCAGAGTGCATCGATGCATGGTTGG
TGCATCAATGCATGGTAG
Found at i:8799130 original size:19 final size:19
Alignment explanation
Indices: 8799106--8799196 Score: 173
Period size: 19 Copynumber: 4.8 Consensus size: 19
8799096 AAAATCCTTA
8799106 GTGCATCGATGCATGGTAT
1 GTGCATCGATGCATGGTAT
*
8799125 GTGCATCGATGCATTGTAT
1 GTGCATCGATGCATGGTAT
8799144 GTGCATCGATGCATGGTAT
1 GTGCATCGATGCATGGTAT
8799163 GTGCATCGATGCATGGTAT
1 GTGCATCGATGCATGGTAT
8799182 GTGCATCGATGCATG
1 GTGCATCGATGCATG
8799197 AAATGCATTC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 70 1.00
ACGTcount: A:0.21, C:0.16, G:0.31, T:0.32
Consensus pattern (19 bp):
GTGCATCGATGCATGGTAT
Found at i:8799251 original size:122 final size:121
Alignment explanation
Indices: 8799022--8799260 Score: 297
Period size: 122 Copynumber: 2.0 Consensus size: 121
8799012 AATAGCCAGA
* *
8799022 GTGCATCGATGCATGGTTGGTGCATCAATGCATGGCTGGTGCATCGATGCATCAAATGTATTTGA
1 GTGCATCGATGCATGGTTGGTGCATCAATGCATGGCTGGTGCATCGATGCATCAAATGCATTCGA
*
8799087 TGTTTTCATAAAATCCTTAGTGCATCGATGCATGGTATGTGCATCGATGCATTGTAT
66 TG-TTTCATAAAATCCATAGTGCATCGATGCATGGTATGTGCATCGATGCATTGTAT
* * *
8799144 GTGCATCGATGCATGGTAT-GTGCATCGATGCATGG-TATGTGCATCGATGCATGAAATGCATTC
1 GTGCATCGATGCATGGT-TGGTGCATCAATGCATGGCT-GGTGCATCGATGCATCAAATGCATTC
** * * *
8799207 GATG-TTCAATTTAATTCATGGTGCATCGATGCATGG-ATTGGTGCATCGGTGCAT
64 GATGTTTC-ATAAAATCCATAGTGCATCGATGCATGGTA-T-GTGCATCGATGCAT
8799261 CACTCTGAAA
Statistics
Matches: 101, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
120 4 0.04
121 25 0.25
122 71 0.70
123 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.33
Consensus pattern (121 bp):
GTGCATCGATGCATGGTTGGTGCATCAATGCATGGCTGGTGCATCGATGCATCAAATGCATTCGA
TGTTTCATAAAATCCATAGTGCATCGATGCATGGTATGTGCATCGATGCATTGTAT
Found at i:8800042 original size:61 final size:61
Alignment explanation
Indices: 8799963--8800094 Score: 192
Period size: 61 Copynumber: 2.2 Consensus size: 61
8799953 AGAAGATGGG
** *
8799963 CACAACCTTATATGTCATATCTGGATCAACACTAGAGTGTAAACTTAGAGCAGGTGGTGGA
1 CACAACCTTATATGTCATATCCAGATCAACACTAGAGTGTAAACTTAGAGCAGGAGGTGGA
* * * * *
8800024 CACGACCTTATGTGTCATATCCAGATCAACACTAGAGTGTAAACTTGGTGCATGAGGTGGA
1 CACAACCTTATATGTCATATCCAGATCAACACTAGAGTGTAAACTTAGAGCAGGAGGTGGA
8800085 CACAACCTTA
1 CACAACCTTA
8800095 CGCGCAAGCA
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (61 bp):
CACAACCTTATATGTCATATCCAGATCAACACTAGAGTGTAAACTTAGAGCAGGAGGTGGA
Found at i:8811188 original size:37 final size:37
Alignment explanation
Indices: 8811133--8811205 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
8811123 AAGAGTCGAG
*
8811133 GGTTTACCTATGTCTTTCGGGACATATGGACAGTTAT
1 GGTTTACCTATGTCTTTCGGAACATATGGACAGTTAT
*
8811170 GGTTTACCTATGTTTTTCGGAACATATGGACAGTTA
1 GGTTTACCTATGTCTTTCGGAACATATGGACAGTTA
8811206 CATAGGTCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (37 bp):
GGTTTACCTATGTCTTTCGGAACATATGGACAGTTAT
Found at i:8812049 original size:22 final size:22
Alignment explanation
Indices: 8812024--8812093 Score: 95
Period size: 22 Copynumber: 3.2 Consensus size: 22
8812014 TTTTACCAAG
* *
8812024 GGTATTGTTCATTACTGTTTAT
1 GGTATTGTTCATTACTGTTCAC
* *
8812046 GGTATTGTTTATTAATGTTCAC
1 GGTATTGTTCATTACTGTTCAC
*
8812068 GGTGTTGTTCATTACTGTTCAC
1 GGTATTGTTCATTACTGTTCAC
8812090 GGTA
1 GGTA
8812094 CTTTACATAC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.19, C:0.11, G:0.21, T:0.49
Consensus pattern (22 bp):
GGTATTGTTCATTACTGTTCAC
Found at i:8816570 original size:21 final size:20
Alignment explanation
Indices: 8816544--8816589 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
8816534 GAAGTGATTG
8816544 TATTGATACTAGGA-GTATCGA
1 TATTGATA-T-GGAGGTATCGA
8816565 TATTGATATGGAGGGTATCGA
1 TATTGATATGGA-GGTATCGA
8816586 TATT
1 TATT
8816590 AGGAAACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.13
20 1 0.04
21 19 0.83
ACGTcount: A:0.30, C:0.07, G:0.26, T:0.37
Consensus pattern (20 bp):
TATTGATATGGAGGTATCGA
Found at i:8817530 original size:28 final size:28
Alignment explanation
Indices: 8817485--8817553 Score: 111
Period size: 28 Copynumber: 2.5 Consensus size: 28
8817475 GTCCTTAAGG
* *
8817485 AGTGTTCCTTTGGGATATATGTGTTATA
1 AGTGGTCCTTCGGGATATATGTGTTATA
*
8817513 TGTGGTCCTTCGGGATATATGTGTTATA
1 AGTGGTCCTTCGGGATATATGTGTTATA
8817541 AGTGGTCCTTCGG
1 AGTGGTCCTTCGG
8817554 AACAAATCCT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.17, C:0.12, G:0.29, T:0.42
Consensus pattern (28 bp):
AGTGGTCCTTCGGGATATATGTGTTATA
Found at i:8819209 original size:53 final size:53
Alignment explanation
Indices: 8819129--8819257 Score: 231
Period size: 53 Copynumber: 2.4 Consensus size: 53
8819119 CAATATACGT
*
8819129 GCTTTTGAGAGATTGCCATTTTCCATAGCCTAACATGCTTAGTTATTGTAAGA
1 GCTTTCGAGAGATTGCCATTTTCCATAGCCTAACATGCTTAGTTATTGTAAGA
8819182 GCTTTCGAGAGATTGCCATTTTCCATAGCCTAACATGCTTAGTTATTGTAAGA
1 GCTTTCGAGAGATTGCCATTTTCCATAGCCTAACATGCTTAGTTATTGTAAGA
* *
8819235 GCTTTCGAGAGATAGTCATTTTC
1 GCTTTCGAGAGATTGCCATTTTC
8819258 TAAGTGTCGA
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 73 1.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (53 bp):
GCTTTCGAGAGATTGCCATTTTCCATAGCCTAACATGCTTAGTTATTGTAAGA
Found at i:8820814 original size:17 final size:17
Alignment explanation
Indices: 8820794--8820826 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8820784 ATATTTATTT
*
8820794 ATATAAAATATAATATA
1 ATATAAAAAATAATATA
8820811 ATATAAAAAATAATAT
1 ATATAAAAAATAATAT
8820827 TATGGTCTCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
ATATAAAAAATAATATA
Found at i:8822054 original size:13 final size:13
Alignment explanation
Indices: 8822018--8822055 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
8822008 TTAAAATTAT
8822018 TATTTATATAATATA
1 TATTTA-ATAA-ATA
8822033 TATTT-ATAAATA
1 TATTTAATAAATA
8822045 TATTTAATAAA
1 TATTTAATAAA
8822056 AGAATTCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 8 0.36
13 9 0.41
15 5 0.23
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TATTTAATAAATA
Found at i:8829881 original size:561 final size:561
Alignment explanation
Indices: 8828819--8829938 Score: 2204
Period size: 561 Copynumber: 2.0 Consensus size: 561
8828809 AAGATTTCTT
8828819 CAATCTGCAAACTAAATGCTCGTTTCCAGGTTGAGTGAAACCTTCAGGTTGCCGCATGTAGATCT
1 CAATCTGCAAACTAAATGCTCGTTTCCAGGTTGAGTGAAACCTTCAGGTTGCCGCATGTAGATCT
* *
8828884 GCTCCTCTAAATCACCATGCAAAAAAGAAGTTTTAACATCCATCTGCTCTAAATGCAAATCCCAA
66 ACTCCTCTAAATCACAATGCAAAAAAGAAGTTTTAACATCCATCTGCTCTAAATGCAAATCCCAA
*
8828949 CTAGCCACCAATGCAAGTACTGCTCGGATTGAAGTGTGTCTGACCACAGGAGAAAAGATTTCATC
131 CTAGCCACCAATGCAAGTACTGCTCAGATTGAAGTGTGTCTGACCACAGGAGAAAAGATTTCATC
8829014 ATAATCAACTCCTTTCTGCTGTGAAAAACCCTTCGCTACCAAACGAGCCTTGAACTTCTCCCCCT
196 ATAATCAACTCCTTTCTGCTGTGAAAAACCCTTCGCTACCAAACGAGCCTTGAACTTCTCCCCCT
8829079 CTTTTTCTGTTACTGCTGGTTTCTTCTTATACACCCATTTGCAACCAATCGACTTCTTACCCTCA
261 CTTTTTCTGTTACTGCTGGTTTCTTCTTATACACCCATTTGCAACCAATCGACTTCTTACCCTCA
8829144 GGAAGGGGAACTAACTCCCATGTGCGATTGTGATTCAAAGACTCCATCTCCTCAACCATGGCTAC
326 GGAAGGGGAACTAACTCCCATGTGCGATTGTGATTCAAAGACTCCATCTCCTCAACCATGGCTAC
8829209 CATCCACTTTTCGTTTTCCTGACTAGTAACGGCATCATGAAAAGTAACCGGATCATCACTGCTAA
391 CATCCACTTTTCGTTTTCCTGACTAGTAACGGCATCATGAAAAGTAACCGGATCATCACTGCTAA
8829274 CAATAAGTGCAAAAGATACCAAGTCTTCAAAACCCAATCTGTTCGGAGGCTTTATATTCGTCCGT
456 CAATAAGTGCAAAAGATACCAAGTCTTCAAAACCCAATCTGTTCGGAGGCTTTATATTCGTCCGT
8829339 CTCACCCTGTCTCTGGCGAGACTATAATCCTGCAAATCACC
521 CTCACCCTGTCTCTGGCGAGACTATAATCCTGCAAATCACC
8829380 CAATCTGCAAACTAAATGCTCGTTTCCAGGTTGAGTGAAACCTTCAGGTTGCCGCATGTAGATCT
1 CAATCTGCAAACTAAATGCTCGTTTCCAGGTTGAGTGAAACCTTCAGGTTGCCGCATGTAGATCT
8829445 ACTCCTCTAAATCACAATGCAAAAAAGAAGTTTTAACATCCATCTGCTCTAAATGCAAATCCCAA
66 ACTCCTCTAAATCACAATGCAAAAAAGAAGTTTTAACATCCATCTGCTCTAAATGCAAATCCCAA
8829510 CTAGCCACCAATGCAAGTACTGCTCAGATTGAAGTGTGTCTGACCACAGGAGAAAAGATTTCATC
131 CTAGCCACCAATGCAAGTACTGCTCAGATTGAAGTGTGTCTGACCACAGGAGAAAAGATTTCATC
8829575 ATAATCAACTCCTTTCTGCTGTGAAAAACCCTTCGCTACCAAACGAGCCTTGAACTTCTCCCCCT
196 ATAATCAACTCCTTTCTGCTGTGAAAAACCCTTCGCTACCAAACGAGCCTTGAACTTCTCCCCCT
8829640 CTTTTTCTGTTACTGCTGGTTTCTTCTTATACACCCATTTGCAACCAATCGACTTCTTACCCTCA
261 CTTTTTCTGTTACTGCTGGTTTCTTCTTATACACCCATTTGCAACCAATCGACTTCTTACCCTCA
8829705 GGAAGGGGAACTAACTCCCATGTGCGATTGTGATTCAAAGACTCCATCTCCTCAACCATGGCTAC
326 GGAAGGGGAACTAACTCCCATGTGCGATTGTGATTCAAAGACTCCATCTCCTCAACCATGGCTAC
*
8829770 CATCCACTTTTCGTTTTCCTGACTAGTAACGGCATCATGAAAAGTAACCGGATCATCACTTCTAA
391 CATCCACTTTTCGTTTTCCTGACTAGTAACGGCATCATGAAAAGTAACCGGATCATCACTGCTAA
8829835 CAATAAGTGCAAAAGATACCAAGTCTTCAAAACCCAATCTGTTCGGAGGCTTTATATTCGTCCGT
456 CAATAAGTGCAAAAGATACCAAGTCTTCAAAACCCAATCTGTTCGGAGGCTTTATATTCGTCCGT
8829900 CTCACCCTGTCTCTGGCGAGACTATAATCCTGCAAATCA
521 CTCACCCTGTCTCTGGCGAGACTATAATCCTGCAAATCA
8829939 TCCGTAGTGG
Statistics
Matches: 555, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
561 555 1.00
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (561 bp):
CAATCTGCAAACTAAATGCTCGTTTCCAGGTTGAGTGAAACCTTCAGGTTGCCGCATGTAGATCT
ACTCCTCTAAATCACAATGCAAAAAAGAAGTTTTAACATCCATCTGCTCTAAATGCAAATCCCAA
CTAGCCACCAATGCAAGTACTGCTCAGATTGAAGTGTGTCTGACCACAGGAGAAAAGATTTCATC
ATAATCAACTCCTTTCTGCTGTGAAAAACCCTTCGCTACCAAACGAGCCTTGAACTTCTCCCCCT
CTTTTTCTGTTACTGCTGGTTTCTTCTTATACACCCATTTGCAACCAATCGACTTCTTACCCTCA
GGAAGGGGAACTAACTCCCATGTGCGATTGTGATTCAAAGACTCCATCTCCTCAACCATGGCTAC
CATCCACTTTTCGTTTTCCTGACTAGTAACGGCATCATGAAAAGTAACCGGATCATCACTGCTAA
CAATAAGTGCAAAAGATACCAAGTCTTCAAAACCCAATCTGTTCGGAGGCTTTATATTCGTCCGT
CTCACCCTGTCTCTGGCGAGACTATAATCCTGCAAATCACC
Found at i:8834518 original size:20 final size:21
Alignment explanation
Indices: 8834493--8834540 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
8834483 TATATAAATA
8834493 TAAATTTC-AAATTTATTGAT
1 TAAATTTCAAAATTTATTGAT
8834513 TAAATTTCAAAATTTATTGAT
1 TAAATTTCAAAATTTATTGAT
8834534 TAAATTT
1 TAAATTT
8834541 GTATATTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 8 0.30
21 19 0.70
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (21 bp):
TAAATTTCAAAATTTATTGAT
Found at i:8834628 original size:68 final size:67
Alignment explanation
Indices: 8834512--8834646 Score: 182
Period size: 68 Copynumber: 2.0 Consensus size: 67
8834502 AATTTATTGA
* *
8834512 TTAAATTTCAAAATTTATTGATTAAATTTGTATATTATGTGAACTTATTGTAAAATTAAATTGAT
1 TTAAATTTCAAAATTTATTGATTAAATTTGTATATTATCTGAACTTATTATAAAATTAAATTGAT
8834577 AT
66 AT
* * * * *
8834579 TTAAATTTTAGAATTTTATTTATTAAATTTGTATATTATACT-AATTTATTATAAATTTAAATTG
1 TTAAATTTCA-AAATTTATTGATTAAATTTGTATATTAT-CTGAACTTATTATAAAATTAAATTG
8834643 ATAT
64 ATAT
8834647 ATTTTTATGT
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
67 9 0.15
68 49 0.83
69 1 0.02
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (67 bp):
TTAAATTTCAAAATTTATTGATTAAATTTGTATATTATCTGAACTTATTATAAAATTAAATTGAT
AT
Found at i:8837878 original size:17 final size:17
Alignment explanation
Indices: 8837852--8837887 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
8837842 TAAAAAATAG
8837852 AAAAATGGTAATTA-AA
1 AAAAATGGTAATTAGAA
8837868 AAAAGATGGTAATTAGAA
1 AAAA-ATGGTAATTAGAA
8837886 AA
1 AA
8837888 TGATATTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 10 0.56
18 4 0.22
ACGTcount: A:0.61, C:0.00, G:0.17, T:0.22
Consensus pattern (17 bp):
AAAAATGGTAATTAGAA
Found at i:8839112 original size:15 final size:15
Alignment explanation
Indices: 8839072--8839101 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8839062 ATAGACTTTC
*
8839072 AAAATATTGAGGATT
1 AAAAGATTGAGGATT
8839087 AAAAGATTGAGGATT
1 AAAAGATTGAGGATT
8839102 GGAAGTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (15 bp):
AAAAGATTGAGGATT
Found at i:8839824 original size:62 final size:62
Alignment explanation
Indices: 8839643--8839864 Score: 191
Period size: 62 Copynumber: 3.6 Consensus size: 62
8839633 TATGTTTTTG
* * * * *
8839643 AAACCCCTGAGGCACTGTCAAAAAATCATTTATAGTTTTAAAA--CCCTTAAAAAGGGTTTCA
1 AAACCCCTGAGGCAGTGTTAAAAAATCACTTATAGTTTCAAAACCCCCTTAAAGA-GGTTTCA
* * * * * ** * **
8839704 AAACCCCTGATGTAGT-ATAAAAAAT-ACTTATGGTTTCGAAACTCCCCTTAGCGGGGTTTTG
1 AAACCCCTGAGGCAGTGTTAAAAAATCACTTATAGTTTCAAAAC-CCCCTTAAAGAGGTTTCA
* * * *
8839765 AACCCCCTGAGGCAGTGTTAAAAAATCATTTATAGTTTCAAAACCCCCTCATAGAGGTTTCA
1 AAACCCCTGAGGCAGTGTTAAAAAATCACTTATAGTTTCAAAACCCCCTTAAAGAGGTTTCA
* * * *
8839827 AAACCCCTGAAGCAATGTTAAAAACTCACTTATGGTTT
1 AAACCCCTGAGGCAGTGTTAAAAAATCACTTATAGTTT
8839865 TGAAATCCCA
Statistics
Matches: 122, Mismatches: 34, Indels: 9
0.74 0.21 0.05
Matches are distributed among these distances:
59 12 0.10
60 7 0.06
61 31 0.25
62 58 0.48
63 14 0.11
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (62 bp):
AAACCCCTGAGGCAGTGTTAAAAAATCACTTATAGTTTCAAAACCCCCTTAAAGAGGTTTCA
Found at i:8842599 original size:20 final size:20
Alignment explanation
Indices: 8842570--8842608 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8842560 AGAGCTACTA
*
8842570 TAGGATCATATAGATGCATT
1 TAGGAGCATATAGATGCATT
*
8842590 TAGGAGCATATAGTTGCAT
1 TAGGAGCATATAGATGCAT
8842609 GTGATGGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.33
Consensus pattern (20 bp):
TAGGAGCATATAGATGCATT
Found at i:8853804 original size:22 final size:22
Alignment explanation
Indices: 8853776--8853818 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8853766 AGTTTTATTA
8853776 AAGTTTTCTCTTTTTACTTTTC
1 AAGTTTTCTCTTTTTACTTTTC
* *
8853798 AAGTTTTTTCTTTTTCCTTTT
1 AAGTTTTCTCTTTTTACTTTT
8853819 ATTTTCAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.12, C:0.16, G:0.05, T:0.67
Consensus pattern (22 bp):
AAGTTTTCTCTTTTTACTTTTC
Found at i:8860675 original size:18 final size:18
Alignment explanation
Indices: 8860652--8860694 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
8860642 CATCTTTACA
8860652 AAAATAAAAAAAATATAT
1 AAAATAAAAAAAATATAT
* * *
8860670 AAAATAGATAATATATAT
1 AAAATAAAAAAAATATAT
*
8860688 TAAATAA
1 AAAATAA
8860695 TTAAATATTT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (18 bp):
AAAATAAAAAAAATATAT
Found at i:8860723 original size:15 final size:14
Alignment explanation
Indices: 8860684--8860723 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
8860674 TAGATAATAT
8860684 ATATTAAATAATTAA
1 ATATTAAA-AATTAA
*
8860699 ATATTTAAAATTTAA
1 ATA-TTAAAAATTAA
8860714 ATATTAAAAA
1 ATATTAAAAA
8860724 ATGGGCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 6 0.27
15 11 0.50
16 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
ATATTAAAAATTAA
Found at i:8866507 original size:200 final size:199
Alignment explanation
Indices: 8866221--8866618 Score: 500
Period size: 200 Copynumber: 2.0 Consensus size: 199
8866211 AAAAAATCAG
* * *
8866221 TTAACTTCCCAAAAATACCCCTTGAACATGCCTATCAAGCTATTTTAGCTTGTTGTCCATGCACA
1 TTAACTTCCCAAAAATACCCCTCGAACATGCCTATCAAGCCATTTTAGCTTGTTCTCCATGCACA
* * * *
8866286 AAACTAAGCTTTGAAACCATTTTCAAT-GTGATTTTTACC-CGCTTACAATGTCTTGTATATGCT
66 AAACCAAGATTTGAAACCATTTTC-ATCATGATTTTTACCACGCTTACAATGTCTCGTATATGC-
*
8866349 AG-TATTACCCTCATCTGAAAGATAA-GTTGCTATACTACGCCTCTAATATCATAAATTATGAAA
129 AGATATTACCCTCAACT-AAA-A-AAGGTTGCTATACTACGCCTCTAATATCATAAATTATGAAA
8866412 ACTTTCCAA
191 ACTTTCCAA
** * **
8866421 TTAACTTCCCGGAAATACCCCTCGAATATGCCTATCAAGCCATTTTAGCTTGTTCTTTATGCACA
1 TTAACTTCCCAAAAATACCCCTCGAACATGCCTATCAAGCCATTTTAGCTTGTTCTCCATGCACA
* * *
8866486 AAACCAAGATTT-AGAACCATTTTCATCATGATTTTTACCACGTTTACAATGTCTCGTATGTGCC
66 AAACCAAGATTTGA-AACCATTTTCATCATGATTTTTACCACGCTTACAATGTCTCGTATATGCA
* * * * * * *
8866550 GATATTAGCCTTAACTAAAAAAGGTTTCTATATTACGCCTCTAATATTATATATTATGAAAATTT
130 GATATTACCCTCAACTAAAAAAGGTTGCTATACTACGCCTCTAATATCATAAATTATGAAAACTT
8866615 TCCA
195 TCCA
8866619 TTTCCAACCC
Statistics
Matches: 170, Mismatches: 23, Indels: 11
0.83 0.11 0.05
Matches are distributed among these distances:
198 2 0.01
199 45 0.26
200 92 0.54
201 31 0.18
ACGTcount: A:0.32, C:0.22, G:0.11, T:0.35
Consensus pattern (199 bp):
TTAACTTCCCAAAAATACCCCTCGAACATGCCTATCAAGCCATTTTAGCTTGTTCTCCATGCACA
AAACCAAGATTTGAAACCATTTTCATCATGATTTTTACCACGCTTACAATGTCTCGTATATGCAG
ATATTACCCTCAACTAAAAAAGGTTGCTATACTACGCCTCTAATATCATAAATTATGAAAACTTT
CCAA
Found at i:8867303 original size:10 final size:10
Alignment explanation
Indices: 8867288--8867320 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
8867278 CGAAATAATA
8867288 AATATTATAT
1 AATATTATAT
8867298 AATATTATAT
1 AATATTATAT
8867308 AAATATTATAT
1 -AATATTATAT
8867319 AA
1 AA
8867321 ATAATATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
AATATTATAT
Found at i:8867312 original size:11 final size:11
Alignment explanation
Indices: 8867285--8867323 Score: 71
Period size: 11 Copynumber: 3.6 Consensus size: 11
8867275 AACCGAAATA
8867285 ATAAATATTAT
1 ATAAATATTAT
8867296 AT-AATATTAT
1 ATAAATATTAT
8867306 ATAAATATTAT
1 ATAAATATTAT
8867317 ATAAATA
1 ATAAATA
8867324 ATATTATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 10 0.37
11 17 0.63
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
ATAAATATTAT
Found at i:8867337 original size:14 final size:14
Alignment explanation
Indices: 8867296--8867334 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 14
8867286 TAAATATTAT
8867296 ATAATATTATAT--
1 ATAATATTATATAA
8867308 A-AATATTATATAA
1 ATAATATTATATAA
8867321 ATAATATTAT-TAA
1 ATAATATTATATAA
8867334 A
1 A
8867335 ATAGAAATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 10 0.42
12 1 0.04
13 5 0.21
14 8 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATAATATTATATAA
Found at i:8867509 original size:14 final size:14
Alignment explanation
Indices: 8867487--8867545 Score: 66
Period size: 14 Copynumber: 4.2 Consensus size: 14
8867477 CTTAAGGCTA
* *
8867487 AATAATATATAAAT
1 AATATTATATATAT
8867501 AATATTATATATAT
1 AATATTATATATAT
8867515 -ATATATATATATAT
1 AATAT-TATATATAT
* *
8867529 AATATTAAATATGT
1 AATATTATATATAT
8867543 AAT
1 AAT
8867546 TTTCATTTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
13 4 0.10
14 31 0.79
15 4 0.10
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (14 bp):
AATATTATATATAT
Found at i:8867511 original size:2 final size:2
Alignment explanation
Indices: 8867491--8867533 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
8867481 AGGCTAAATA
*
8867491 AT AT AT AA AT A- AT AT -T AT AT AT AT AT AT AT AT AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8867530 AT AT
1 AT AT
8867534 TAAATATGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
1 3 0.08
2 33 0.92
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8868104 original size:29 final size:27
Alignment explanation
Indices: 8868064--8868118 Score: 74
Period size: 29 Copynumber: 2.0 Consensus size: 27
8868054 ATATTTTTAA
*
8868064 ATAAAAATAATAAAATAACTCAATTTC
1 ATAAAAATAATAAAATAACTAAATTTC
*
8868091 ATAAAAATAAAATATAATAACTAAATTT
1 ATAAAAAT--AATAAAATAACTAAATTT
8868119 ATTCAAATGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 8 0.33
29 16 0.67
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (27 bp):
ATAAAAATAATAAAATAACTAAATTTC
Found at i:8872365 original size:26 final size:23
Alignment explanation
Indices: 8872321--8872368 Score: 60
Period size: 26 Copynumber: 2.0 Consensus size: 23
8872311 TCTTGAAAAT
*
8872321 AAAAGAAAAAAATGAAAAACTTG
1 AAAAGAAAAAAAAGAAAAACTTG
8872344 AAAAGTAAAATAAAAGAGAAAACTT
1 AAAAG-AAAA-AAAAGA-AAAACTT
8872369 TAATAAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 5 0.24
24 4 0.19
25 5 0.24
26 7 0.33
ACGTcount: A:0.69, C:0.04, G:0.12, T:0.15
Consensus pattern (23 bp):
AAAAGAAAAAAAAGAAAAACTTG
Found at i:8889802 original size:22 final size:22
Alignment explanation
Indices: 8889772--8889816 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
8889762 CCGAAATAAC
*
8889772 ATTCCTAATAAACATCATATAT
1 ATTCATAATAAACATCATATAT
8889794 ATTCATAATAAACATCATATAT
1 ATTCATAATAAACATCATATAT
8889816 A
1 A
8889817 ATATACAGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (22 bp):
ATTCATAATAAACATCATATAT
Found at i:8892263 original size:30 final size:30
Alignment explanation
Indices: 8892206--8892263 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
8892196 TACATAGCTG
* * *
8892206 TTGAAAATTACACTTTTGGTCCTTAAACAT
1 TTGAAAATTACACTTCTAGTCCCTAAACAT
8892236 TTGAAAATTA-ACTTACTAGTCCCTAAAC
1 TTGAAAATTACACTT-CTAGTCCCTAAAC
8892264 TTTTATAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (30 bp):
TTGAAAATTACACTTCTAGTCCCTAAACAT
Found at i:8899343 original size:202 final size:202
Alignment explanation
Indices: 8898997--8899403 Score: 805
Period size: 202 Copynumber: 2.0 Consensus size: 202
8898987 TCGGTTACCA
8898997 AAAAATGACATTTCTCTAAATTTAGTACTAGGTTGGATTCTTCACATTGTTTCAGTCATTTGGAT
1 AAAAATGACATTTCTCTAAATTTAGTACTAGGTTGGATTCTTCACATTGTTTCAGTCATTTGGAT
8899062 AAATTTCCATGACATCGGTTGAAATCGTCACCTGAGACGGAGAAATCAACCATAAATATTTCCAT
66 AAATTTCCATGACATCGGTTGAAATCGTCACCTGAGACGGAGAAATCAACCATAAATATTTCCAT
8899127 GCACTCTTCCACCATATCTGAAAATATGGTCATCATGCATCTTTGAAAGGTAGTTGGAGCGTTAC
131 GCACTCTTCCACCATATCTGAAAATATGGTCATCATGCATCTTTGAAAGGTAGTTGGAGCGTTAC
*
8899192 ATAGCCC
196 AAAGCCC
8899199 AAAAATGACATTTCTCTAAATTTAGTACTAGGTTGGATTCTTCACATTGTTTCAGTCATTTGGAT
1 AAAAATGACATTTCTCTAAATTTAGTACTAGGTTGGATTCTTCACATTGTTTCAGTCATTTGGAT
8899264 AAATTTCCATGACATCGGTTGAAATCGTCACCTGAGACGGAGAAATCAACCATAAATATTTCCAT
66 AAATTTCCATGACATCGGTTGAAATCGTCACCTGAGACGGAGAAATCAACCATAAATATTTCCAT
8899329 GCACTCTTCCACCATATCTGAAAATATGGTCATCATGCATCTTTGAAAGGTAGTTGGAGCGTTAC
131 GCACTCTTCCACCATATCTGAAAATATGGTCATCATGCATCTTTGAAAGGTAGTTGGAGCGTTAC
8899394 AAAGCCC
196 AAAGCCC
8899401 AAA
1 AAA
8899404 CAACATTCGT
Statistics
Matches: 204, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
202 204 1.00
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (202 bp):
AAAAATGACATTTCTCTAAATTTAGTACTAGGTTGGATTCTTCACATTGTTTCAGTCATTTGGAT
AAATTTCCATGACATCGGTTGAAATCGTCACCTGAGACGGAGAAATCAACCATAAATATTTCCAT
GCACTCTTCCACCATATCTGAAAATATGGTCATCATGCATCTTTGAAAGGTAGTTGGAGCGTTAC
AAAGCCC
Found at i:8900543 original size:23 final size:23
Alignment explanation
Indices: 8900513--8900559 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
8900503 GGCAATTTAT
8900513 CAACCTGATAATTGAACAACGGG
1 CAACCTGATAATTGAACAACGGG
*
8900536 CAACCTGATAATTGAACAATGGG
1 CAACCTGATAATTGAACAACGGG
8900559 C
1 C
8900560 CCTTTGCACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (23 bp):
CAACCTGATAATTGAACAACGGG
Found at i:8900785 original size:12 final size:12
Alignment explanation
Indices: 8900764--8900797 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8900754 AAATTAATGA
8900764 AAACTTGATGTC
1 AAACTTGATGTC
* *
8900776 CAAGTTGATGTC
1 AAACTTGATGTC
8900788 AAACTTGATG
1 AAACTTGATG
8900798 CCTCCTATAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (12 bp):
AAACTTGATGTC
Found at i:8903072 original size:11 final size:11
Alignment explanation
Indices: 8903058--8903083 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8903048 AATCAAGGAA
8903058 AAAATAAAAAT
1 AAAATAAAAAT
8903069 AAAATAAAAAT
1 AAAATAAAAAT
8903080 AAAA
1 AAAA
8903084 AGAACAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:8903095 original size:21 final size:21
Alignment explanation
Indices: 8903069--8903115 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
8903059 AAATAAAAAT
8903069 AAAATA-AAAATAAAAAGAACA
1 AAAATAGAAAATAAAAA-AACA
* *
8903090 AAAATAGAAATTAAAAAAAGA
1 AAAATAGAAAATAAAAAAACA
8903111 AAAAT
1 AAAAT
8903116 TGGGTTACCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.79, C:0.02, G:0.06, T:0.13
Consensus pattern (21 bp):
AAAATAGAAAATAAAAAAACA
Found at i:8907507 original size:12 final size:12
Alignment explanation
Indices: 8907490--8907515 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8907480 CTCCATCAAT
8907490 AATCTAGACTCA
1 AATCTAGACTCA
8907502 AATCTAGACTCA
1 AATCTAGACTCA
8907514 AA
1 AA
8907516 ATTGTCATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.23, G:0.08, T:0.23
Consensus pattern (12 bp):
AATCTAGACTCA
Found at i:8909117 original size:17 final size:17
Alignment explanation
Indices: 8909095--8909133 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
8909085 TTGTACTCCG
* *
8909095 AAAAATCAAGGAAAAAT
1 AAAAATAAAAGAAAAAT
*
8909112 AAAAATAAAATAAAAAT
1 AAAAATAAAAGAAAAAT
8909129 AAAAA
1 AAAAA
8909134 GAACGAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.13
Consensus pattern (17 bp):
AAAAATAAAAGAAAAAT
Found at i:8909121 original size:11 final size:11
Alignment explanation
Indices: 8909107--8909132 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8909097 AAATCAAGGA
8909107 AAAATAAAAAT
1 AAAATAAAAAT
8909118 AAAATAAAAAT
1 AAAATAAAAAT
8909129 AAAA
1 AAAA
8909133 AGAACGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:8912853 original size:12 final size:12
Alignment explanation
Indices: 8912835--8912868 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
8912825 AAATTAATGA
8912835 AAACTTGATGTC
1 AAACTTGATGTC
*
8912847 CAACTTGATGTC
1 AAACTTGATGTC
8912859 AAACTTGATG
1 AAACTTGATG
8912869 CCTCCTATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (12 bp):
AAACTTGATGTC
Found at i:8915709 original size:64 final size:63
Alignment explanation
Indices: 8915575--8915735 Score: 171
Period size: 64 Copynumber: 2.5 Consensus size: 63
8915565 AATTGTTCAG
* * * * * *
8915575 TGTGTATCGATGCACAGGAAGTGCATCGATGCACCTATTAAAATGGAAACATCGAATGCAATT
1 TGTGCATCGATGCAAAGGAAGTGCATCGATGCACCCATTAAAAAGAAAACATCGAAGGCAATT
* * **
8915638 GGTGCATCGATGCATAAGG-AGTGCATCGATGCATCCCCTTAAAAAGAAAACATCGAAGGTGATT
1 TGTGCATCGATGCA-AAGGAAGTGCATCGATGCA-CCCATTAAAAAGAAAACATCGAAGGCAATT
** * *
8915702 TGTGCATCGATGCACGGGTACTGCATCGATGCAC
1 TGTGCATCGATGCAAAGGAAGTGCATCGATGCAC
8915736 ATGCTAAAGA
Statistics
Matches: 81, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
63 29 0.36
64 52 0.64
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.24
Consensus pattern (63 bp):
TGTGCATCGATGCAAAGGAAGTGCATCGATGCACCCATTAAAAAGAAAACATCGAAGGCAATT
Found at i:8916847 original size:31 final size:30
Alignment explanation
Indices: 8916809--8916904 Score: 79
Period size: 31 Copynumber: 3.1 Consensus size: 30
8916799 GTCAAAGAAC
8916809 TACCTATGTCTTTCGAGACATATGGACAGT
1 TACCTATGTCTTTCGAGACATATGGACAGT
*** *
8916839 ATACCTATGTTCTAAGGA-ACATATGGATAGTT
1 -TACCTATG-TCTTTCGAGACATATGGACAG-T
* * *
8916871 TACCTAGGT-TCTTCGGGACCTATGGACAGT
1 TACCTATGTCT-TTCGAGACATATGGACAGT
8916901 TACC
1 TACC
8916905 GAGGATCTTT
Statistics
Matches: 50, Mismatches: 11, Indels: 9
0.71 0.16 0.13
Matches are distributed among these distances:
29 1 0.02
30 7 0.14
31 36 0.72
32 6 0.12
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (30 bp):
TACCTATGTCTTTCGAGACATATGGACAGT
Found at i:8916921 original size:30 final size:30
Alignment explanation
Indices: 8916887--8917018 Score: 246
Period size: 30 Copynumber: 4.4 Consensus size: 30
8916877 GGTTCTTCGG
* *
8916887 GACCTATGGACAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
8916917 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
8916947 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
8916977 GACCTCTGGATAGTTACCGAGGATCTTTAT
1 GACCTCTGGATAGTTACCGAGGATCTTTAT
8917007 GACCTCTGGATA
1 GACCTCTGGATA
8917019 TGTCCTTTGG
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 100 1.00
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.32
Consensus pattern (30 bp):
GACCTCTGGATAGTTACCGAGGATCTTTAT
Found at i:8917864 original size:21 final size:20
Alignment explanation
Indices: 8917838--8917876 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8917828 CATCAAGGTT
8917838 TTTGTTGAAGCCATGAAATCA
1 TTTGTTGAAGCCAT-AAATCA
*
8917859 TTTGTTGAGGCCATAAAT
1 TTTGTTGAAGCCATAAAT
8917877 TCCTGCAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.36
Consensus pattern (20 bp):
TTTGTTGAAGCCATAAATCA
Found at i:8921443 original size:22 final size:23
Alignment explanation
Indices: 8921418--8921469 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
8921408 TAGCATGTTT
*
8921418 AAAAAT-AAAACTT-AAAATAAA
1 AAAAATGAAAACTTGAAAAGAAA
8921439 AAAAATGAAAACTTGAAAAGAAA
1 AAAAATGAAAACTTGAAAAGAAA
8921462 AGAAAATG
1 A-AAAATG
8921470 TAGAACTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 6 0.22
22 7 0.26
23 8 0.30
24 6 0.22
ACGTcount: A:0.71, C:0.04, G:0.10, T:0.15
Consensus pattern (23 bp):
AAAAATGAAAACTTGAAAAGAAA
Found at i:8922793 original size:40 final size:40
Alignment explanation
Indices: 8922698--8922804 Score: 110
Period size: 40 Copynumber: 2.6 Consensus size: 40
8922688 GGAATACTGC
* *
8922698 TAAAGACTTGTACTTTAGTGGCAT-TTTTATACAAACATTGT
1 TAAAGACTTGTACTTTAGTGG--TGTTTTATACAAACATCGA
* * **
8922739 TATACACTCATACTTTAGTGGTGTTTTATACAAAC-TACGA
1 TAAAGACTTGTACTTTAGTGGTGTTTTATACAAACAT-CGA
*
8922779 TAAAGACTTGTACTTTAGTGGCGTTT
1 TAAAGACTTGTACTTTAGTGGTGTTT
8922805 GTGTTTACAA
Statistics
Matches: 53, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
39 2 0.04
40 34 0.64
41 17 0.32
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.40
Consensus pattern (40 bp):
TAAAGACTTGTACTTTAGTGGTGTTTTATACAAACATCGA
Found at i:8925546 original size:21 final size:21
Alignment explanation
Indices: 8925517--8925566 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
8925507 TGATTTATTA
8925517 TTATAGATTTCAAGTTTCTTG
1 TTATAGATTTCAAGTTTCTTG
* *
8925538 TTATGGATTTCAAGTTTGTTG
1 TTATAGATTTCAAGTTTCTTG
8925559 TTATAGAT
1 TTATAGAT
8925567 GTAAAATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.24, C:0.06, G:0.18, T:0.52
Consensus pattern (21 bp):
TTATAGATTTCAAGTTTCTTG
Found at i:8927099 original size:8 final size:8
Alignment explanation
Indices: 8927075--8927116 Score: 75
Period size: 8 Copynumber: 5.1 Consensus size: 8
8927065 AGCAAGATGA
8927075 GAATATTT
1 GAATATTT
8927083 GAATAATTT
1 GAAT-ATTT
8927092 GAATATTT
1 GAATATTT
8927100 GAATATTT
1 GAATATTT
8927108 GAATATTT
1 GAATATTT
8927116 G
1 G
8927117 TCTTCTGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
8 25 0.76
9 8 0.24
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (8 bp):
GAATATTT
Done.