Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007999.1 Hibiscus syriacus cultivar Beakdansim tig00110450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11700749
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 41 of 50
Found at i:9722208 original size:21 final size:22
Alignment explanation
Indices: 9722179--9722282 Score: 72
Period size: 21 Copynumber: 4.6 Consensus size: 22
9722169 TTCATCAGAA
*
9722179 AAAATAAAAGAAAAAGAAAA-G
1 AAAAGAAAAGAAAAAGAAAAGG
*
9722200 AAAAGAAAAGAAAAGATGAAAGATG
1 AAAAGAAAAGAAAA-A-GAAA-AGG
*
9722225 AAAGATAAAATATGAAAAAGAAAAGG
1 AAA-A-GAAA-A-GAAAAAGAAAAGG
* *
9722251 AAAAGGAAA-AAAAAGAAAAAG
1 AAAAGAAAAGAAAAAGAAAAGG
9722272 -AAA-AAAAGAAA
1 AAAAGAAAAGAAA
9722283 TTGAATCAAG
Statistics
Matches: 67, Mismatches: 7, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
19 3 0.04
20 6 0.09
21 24 0.36
22 1 0.01
23 5 0.07
24 3 0.04
25 5 0.07
26 6 0.09
27 7 0.10
28 2 0.03
29 5 0.07
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (22 bp):
AAAAGAAAAGAAAAAGAAAAGG
Found at i:9722262 original size:14 final size:15
Alignment explanation
Indices: 9722240--9722282 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 15
9722230 TAAAATATGA
*
9722240 AAAAGAAAAGGAAAAGG
1 AAAA-AAAA-GAAAAAG
9722257 AAAAAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
9722272 -AAAAAAAGAAA
1 AAAAAAAAGAAA
9722283 TTGAATCAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 11 0.44
15 6 0.24
16 4 0.16
17 4 0.16
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:9725832 original size:36 final size:36
Alignment explanation
Indices: 9725745--9725999 Score: 174
Period size: 36 Copynumber: 6.9 Consensus size: 36
9725735 CTTGAGAGCA
* *
9725745 TTTCACTCGAAACAGAAATTTTATCTCACTTGAGATTG
1 TTTCACTAGAAACA-AAA-TTTATCTCACTTGAGATAG
** * * * *
9725783 TTTTTCTTA-AAACAAACTTTGTCTCGCTTGAGACAG
1 TTTCAC-TAGAAACAAAATTTATCTCACTTGAGATAG
* * *
9725819 TTTCACTAGAAACATCAATTTATCTAACTTGAGATTG
1 TTTCACTAGAAACA-AAATTTATCTCACTTGAGATAG
** * * * * *
9725856 TTTTTCTTA-AAACAAATTTTGTCTCGCTTGAGACAA
1 TTTCAC-TAGAAACAAAATTTATCTCACTTGAGATAG
* * **
9725892 TTTCACTCGAAACAACAATTTATTTCACTTGAGATTT
1 TTTCACTAGAAACAA-AATTTATCTCACTTGAGATAG
** * *
9725929 TTTTTCTTA-AAACAAACTTTGTCTCACTTGAGATAG
1 TTTCAC-TAGAAACAAAATTTATCTCACTTGAGATAG
*
9725965 TTTCACTCGAAACAACAATTTATCTCACTTGAGAT
1 TTTCACTAGAAACAA-AATTTATCTCACTTGAGAT
9726000 TATTTTTCTT
Statistics
Matches: 158, Mismatches: 50, Indels: 19
0.70 0.22 0.08
Matches are distributed among these distances:
35 4 0.03
36 74 0.47
37 67 0.42
38 12 0.08
39 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (36 bp):
TTTCACTAGAAACAAAATTTATCTCACTTGAGATAG
Found at i:9725867 original size:73 final size:72
Alignment explanation
Indices: 9725730--9726122 Score: 493
Period size: 73 Copynumber: 5.3 Consensus size: 72
9725720 ATCAGCAACA
9725730 TCTCGCTTGAGAGC-ATTTCACTCGAAACAGA-AATTTTATCTCACTTGAGATTGTTTTTCTTAA
1 TCTCGCTTGAGA-CAATTTCACTCGAAACA-ACAA-TTTATCTCACTTGAGATTGTTTTTCTTAA
9725793 AACAAACTTTG
63 AACAAA-TTTG
* * * *
9725804 TCTCGCTTGAGACAGTTTCACTAGAAACATCAATTTATCTAACTTGAGATTGTTTTTCTTAAAAC
1 TCTCGCTTGAGACAATTTCACTCGAAACAACAATTTATCTCACTTGAGATTGTTTTTCTTAAAAC
9725869 AAATTTTG
66 AAA-TTTG
* *
9725877 TCTCGCTTGAGACAATTTCACTCGAAACAACAATTTATTTCACTTGAGATTTTTTTTCTTAAAAC
1 TCTCGCTTGAGACAATTTCACTCGAAACAACAATTTATCTCACTTGAGATTGTTTTTCTTAAAAC
9725942 AAACTTTG
66 AAA-TTTG
* * * *
9725950 TCTCACTTGAGATAGTTTCACTCGAAACAACAATTTATCTCACTTGAGATTATTTTTCTTAAAAC
1 TCTCGCTTGAGACAATTTCACTCGAAACAACAATTTATCTCACTTGAGATTGTTTTTCTTAAAAC
*
9726015 AATATTTT
66 AA-ATTTG
* * * * * *
9726023 TCTCTCTTGATACAATTATTTCACTTGAAACAAGAAATTTTATCTCACTCGAGATAGTTTTTCTT
1 TCTCGCTTGAGAC-A--ATTTCACTCGAAACAA-CAA-TTTATCTCACTTGAGATTGTTTTTCTT
9726088 AAAACAAGATTTG
61 AAAACAA-ATTTG
*
9726101 TCTCGCTTGATACAATTTCACT
1 TCTCGCTTGAGACAATTTCACT
9726123 AGCAACATCA
Statistics
Matches: 281, Mismatches: 30, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
73 180 0.64
74 29 0.10
75 8 0.03
76 14 0.05
77 3 0.01
78 47 0.17
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.40
Consensus pattern (72 bp):
TCTCGCTTGAGACAATTTCACTCGAAACAACAATTTATCTCACTTGAGATTGTTTTTCTTAAAAC
AAATTTG
Found at i:9725967 original size:146 final size:146
Alignment explanation
Indices: 9725730--9726133 Score: 546
Period size: 146 Copynumber: 2.7 Consensus size: 146
9725720 ATCAGCAACA
9725730 TCTCGCTTGAGAGC-ATTTCACTCGAAACAGAAATTTTATCTCACTTGAGATTGTTTTTCTTAAA
1 TCTCGCTTGAGA-CAATTTCACTCGAAACA-AAATTTTATCTCACTTGAGATTGTTTTTCTTAAA
*
9725794 ACAAACTTTGTCTCGCTTGAGACAGTTTCACTAGAAACATCAATTTATCTAACTTGAGATTGTTT
64 ACAAACTTTGTCTCGCTTGAGACAGTTTCACTAGAAACATCAATTTATCTAACTTGAGATTATTT
9725859 TTCTTAAAACAA-ATTTT
129 TTCTTAAAACAATATTTT
* *
9725876 GTCTCGCTTGAGACAATTTCACTCGAAACAACAA-TTTATTTCACTTGAGATTTTTTTTCTTAAA
1 -TCTCGCTTGAGACAATTTCACTCGAAACAA-AATTTTATCTCACTTGAGATTGTTTTTCTTAAA
* * * * *
9725940 ACAAACTTTGTCTCACTTGAGATAGTTTCACTCGAAACAACAATTTATCTCACTTGAGATTATTT
64 ACAAACTTTGTCTCGCTTGAGACAGTTTCACTAGAAACATCAATTTATCTAACTTGAGATTATTT
9726005 TTCTTAAAACAATATTTT
129 TTCTTAAAACAATATTTT
* * * * *
9726023 TCTCTCTTGATACAATTATTTCACTTGAAACAAGAAATTTTATCTCACTCGAGATAGTTTTTCTT
1 TCTCGCTTGAGAC-A--ATTTCACTCGAAAC-A-AAATTTTATCTCACTTGAGATTGTTTTTCTT
* * *
9726088 AAAACAAGA-TTTGTCTCGCTTGATACAATTTCACTAGCAACATCAA
61 AAAACAA-ACTTTGTCTCGCTTGAGACAGTTTCACTAGAAACATCAA
9726134 CATTTCCAGA
Statistics
Matches: 225, Mismatches: 22, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
146 112 0.50
147 35 0.16
149 13 0.06
150 3 0.01
151 61 0.27
152 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.39
Consensus pattern (146 bp):
TCTCGCTTGAGACAATTTCACTCGAAACAAAATTTTATCTCACTTGAGATTGTTTTTCTTAAAAC
AAACTTTGTCTCGCTTGAGACAGTTTCACTAGAAACATCAATTTATCTAACTTGAGATTATTTTT
CTTAAAACAATATTTT
Found at i:9726351 original size:123 final size:123
Alignment explanation
Indices: 9726128--9726704 Score: 811
Period size: 123 Copynumber: 4.7 Consensus size: 123
9726118 TCACTAGCAA
*
9726128 CATCAACATTTCCAGAAGGAGTTCATAATGAGAAGAACTCGA-CTGAGGAGGAAGAAGAAGTTCA
1 CATCAACATTTCCAGAAGGAGTTCATAATGAGAAGAACTC-ATCTGAAGAGGAAGAAGAAGTTCA
* * *
9726192 TAATGAGAAGAAATTGTTCAACCTTTTGCTTGAATCTATCGCAGAACGAGATAGATCAG
65 TAATGAGAAGAACTTGTTCAACCTTTTGCTCGAATCTATCGCAGAAGGAGATAGATCAG
* * *
9726251 TATCAACATTTCCAGAAGGAGTTCATAATGAGAAGAATTCATCTAAAGAGGAAGAAGAAGTTCAT
1 CATCAACATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCAT
* * *
9726316 AATGAGAAGAACTTGTTCAACATTTTGCTCAAATCTATCGCAGAAGGACATAGATCAG
66 AATGAGAAGAACTTGTTCAACCTTTTGCTCGAATCTATCGCAGAAGGAGATAGATCAG
* * * *
9726374 GATCAACATTTCCAGAAGGAGTTCATAATGAAAAGAACTCGTCTGAAGAGGAAAAAGAAGTTCAT
1 CATCAACATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCAT
* * *
9726439 AATGAGAAGAACTTGTTCAACCTTTTGTTCGACTCTATTC-CAGAAGGAGATATATCAG
66 AATGAGAAGAACTTGTTCAACCTTTTGCTCGAATCTA-TCGCAGAAGGAGATAGATCAG
* * * *
9726497 CATCAACATTTCTAAAAGGAGTTCATAATGAGAAGAACTCGTCTGAAGAGGAATAAGAAGTTCAT
1 CATCAACATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCAT
* * * * *
9726562 AATGAGAAGAACTTGTTCAACCTTTTAG-TTGATTC-ATCGCATATGGAGATAGATCAA
66 AATGAGAAGAACTTGTTCAACCTTTT-GCTCGAATCTATCGCAGAAGGAGATAGATCAG
* * * *
9726619 CATTAACATTTCCGGAAGGAGTTCATAATGAGAAGAACTCATCTAAAGATGAAGAAGAAGTTCAT
1 CATCAACATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCAT
* *
9726684 AATGAGAATAACTTTTTCAAC
66 AATGAGAAGAACTTGTTCAAC
9726705 GTTAGATTGA
Statistics
Matches: 407, Mismatches: 43, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
121 2 0.00
122 92 0.23
123 310 0.76
124 3 0.01
ACGTcount: A:0.39, C:0.15, G:0.20, T:0.26
Consensus pattern (123 bp):
CATCAACATTTCCAGAAGGAGTTCATAATGAGAAGAACTCATCTGAAGAGGAAGAAGAAGTTCAT
AATGAGAAGAACTTGTTCAACCTTTTGCTCGAATCTATCGCAGAAGGAGATAGATCAG
Found at i:9727022 original size:118 final size:119
Alignment explanation
Indices: 9726761--9727070 Score: 368
Period size: 118 Copynumber: 2.6 Consensus size: 119
9726751 TTGAGGCATT
* * * *
9726761 AACATTTTCAACGGAAGAGTTCATAATGAGAAGAACTCAAT---AA-AGGAATAAGAAGTTCATA
1 AACATTTCCAATGGAAAAGTTCATAATGAGAAGAACTC-ATCCGAAGAGGAAGAAGAAGTTCATA
* * *
9726822 ATTAGAAGAACTTGTTCAACCTTTTGCTAGATTTCATCACAGAAGGAGATGGATC
65 ATGAGAAGAACTTGTTCAACCTTTAGCTAGATTCCATCACAGAAGGAGATGGATC
* * ** *
9726877 ACCATTTCCAGT-GAAAGAGTTTGTAATGAGAAGAACTCGTCCGAAGAGGAAGAAGAAGTTCATA
1 AACATTTCCAATGGAAA-AGTTCATAATGAGAAGAACTCATCCGAAGAGGAAGAAGAAGTTCATA
* * * *
9726941 ATGAGAAAAACTTGTTCAACC-TTAGTTCGATTCCATCATAGAAGGAGATGGATC
65 ATGAGAAGAACTTGTTCAACCTTTAGCTAGATTCCATCACAGAAGGAGATGGATC
*
9726995 AACATTTCCAATGGAAAAGTTCATAATGAGAAGAACTCATCCGAAG-TG-AGTATA-AAGTTCAT
1 AACATTTCCAATGGAAAAGTTCATAATGAGAAGAACTCATCCGAAGAGGAAG-A-AGAAGTTCAT
9727057 AATGAGAAGAACTT
64 AATGAGAAGAACTT
9727071 TTAGCTCAGA
Statistics
Matches: 163, Mismatches: 23, Indels: 15
0.81 0.11 0.07
Matches are distributed among these distances:
115 4 0.02
116 29 0.18
117 23 0.14
118 67 0.41
119 40 0.25
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.25
Consensus pattern (119 bp):
AACATTTCCAATGGAAAAGTTCATAATGAGAAGAACTCATCCGAAGAGGAAGAAGAAGTTCATAA
TGAGAAGAACTTGTTCAACCTTTAGCTAGATTCCATCACAGAAGGAGATGGATC
Found at i:9728046 original size:8 final size:8
Alignment explanation
Indices: 9728033--9728071 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
9728023 TTATCTGTTA
9728033 TATTTTTAT
1 TATTTTT-T
9728042 T-TTTTTT
1 TATTTTTT
9728049 TATTTTTT
1 TATTTTTT
9728057 TATTTTTTT
1 TA-TTTTTT
9728066 TATTTT
1 TATTTT
9728072 GATCTTTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
7 2 0.07
8 17 0.61
9 9 0.32
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (8 bp):
TATTTTTT
Found at i:9728051 original size:18 final size:18
Alignment explanation
Indices: 9728030--9728066 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
9728020 AAATTATCTG
9728030 TTATATTTTTATTTTTTT
1 TTATATTTTTATTTTTTT
*
9728048 TTATTTTTTTATTTTTTT
1 TTATATTTTTATTTTTTT
9728066 T
1 T
9728067 ATTTTGATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (18 bp):
TTATATTTTTATTTTTTT
Found at i:9728054 original size:9 final size:9
Alignment explanation
Indices: 9728035--9728071 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
9728025 ATCTGTTATA
9728035 TTTTTATTT
1 TTTTTATTT
9728044 TTTTT-TATT
1 TTTTTAT-TT
9728053 TTTTTATTT
1 TTTTTATTT
9728062 TTTTTATTT
1 TTTTTATTT
9728071 T
1 T
9728072 GATCTTTATG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
8 1 0.04
9 24 0.92
10 1 0.04
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (9 bp):
TTTTTATTT
Found at i:9728062 original size:17 final size:18
Alignment explanation
Indices: 9728030--9728071 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 18
9728020 AAATTATCTG
*
9728030 TTATATTTTTATTTTTTT
1 TTATTTTTTTATTTTTTT
9728048 TTATTTTTTTA-TTTTTT
1 TTATTTTTTTATTTTTTT
9728065 TTATTTT
1 TTATTTT
9728072 GATCTTTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (18 bp):
TTATTTTTTTATTTTTTT
Found at i:9728128 original size:17 final size:17
Alignment explanation
Indices: 9728094--9728136 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
9728084 TTACTTTATT
* *
9728094 ATATTTTAGTCATTTTA
1 ATATTTTAATCATCTTA
*
9728111 ATATTTTAATCCTCTTA
1 ATATTTTAATCATCTTA
9728128 ACTATTTTA
1 A-TATTTTA
9728137 TTTTGGGCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.30, C:0.12, G:0.02, T:0.56
Consensus pattern (17 bp):
ATATTTTAATCATCTTA
Found at i:9729587 original size:11 final size:11
Alignment explanation
Indices: 9729571--9729595 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9729561 CATGAAATTC
9729571 TAATTAAAACA
1 TAATTAAAACA
9729582 TAATTAAAACA
1 TAATTAAAACA
9729593 TAA
1 TAA
9729596 CAACAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
TAATTAAAACA
Found at i:9731110 original size:102 final size:100
Alignment explanation
Indices: 9730788--9731165 Score: 447
Period size: 101 Copynumber: 3.7 Consensus size: 100
9730778 ACCTACAATG
* *
9730788 TTATAAACTTGTTTTGTCTTATTTTTGCATAATATAAAA-GGTTTCAAACATATAATGTAAACAA
1 TTATAAACTTGTTTTGTCTTACTTTTGCATAATA-AAAACGGTTTCAAACATATAATGTAAACGA
* * *
9730852 TTGACAATTAAAAAAGGCGCTATATATAATGCTATAC
65 TTGACAATTAAAAAAGGCGC-AAATATAATGTTAAAC
* ** * ** * *
9730889 TTTTAAA-TCTGTTTTGTCTTACTTTTGCATAATAAAAACAATTTCAAAGATATAACCTAAATGG
1 TTATAAACT-TGTTTTGTCTTACTTTTGCATAATAAAAACGGTTTCAAACATATAATGTAAACGA
* *
9730953 TTGATAATTAAAAATAGGCGCAATTATAATGTTAAAC
65 TTGACAATTAAAAA-AGGCGCAAATATAATGTTAAAC
* * * * *
9730990 TTATAAATTTGTTTTGTCTTTCTTTTTCATAATAAAAATGGTTTTAAACATATAATGTAAACGAT
1 TTATAAACTTGTTTTGTCTTACTTTTGCATAATAAAAACGGTTTCAAACATATAATGTAAACGAT
* *
9731055 TGACAATTTAAAAAAGGCGCAACCTAGAATGTTAAAC
66 TGACAA-TTAAAAAAGGCGCAA-ATATAATGTTAAAC
* *
9731092 TTATAAACTTGTTTTGTCTTACTTTTTTCATAATATAAACGGTTTCAAACATATAATGTAAACGG
1 TTATAAACTTGTTTTGTCTTAC-TTTTGCATAATAAAAACGGTTTCAAACATATAATGTAAAC-G
9731157 A-TGACAATT
64 ATTGACAATT
9731166 TTAAAAAGTA
Statistics
Matches: 234, Mismatches: 35, Indels: 15
0.82 0.12 0.05
Matches are distributed among these distances:
100 5 0.02
101 136 0.58
102 48 0.21
103 43 0.18
104 2 0.01
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (100 bp):
TTATAAACTTGTTTTGTCTTACTTTTGCATAATAAAAACGGTTTCAAACATATAATGTAAACGAT
TGACAATTAAAAAAGGCGCAAATATAATGTTAAAC
Found at i:9731435 original size:76 final size:77
Alignment explanation
Indices: 9731303--9731519 Score: 258
Period size: 76 Copynumber: 2.8 Consensus size: 77
9731293 TTTTTCCTTT
* * *
9731303 TTTTAATTAATAAAAATATTAACATTCCAGATCGTATCTTATTTCTTAGTGAACCATGACATTCT
1 TTTT-ATTAATAAAAATATTAACATTCCAGATCGCAACATATTTCTTAGTGAACCATGACATTCT
*
9731368 TGGGTGCAACCCA
65 TGGGCGCAACCCA
* * * * * *
9731381 TTTTATTAATAAAAATATTAGCATT-CAGATCACAACCTATTTCTTAGCGAACCATAACATTTTT
1 TTTTATTAATAAAAATATTAACATTCCAGATCGCAACATATTTCTTAGTGAACCATGACATTCTT
**
9731445 TTGCGCAACCCA
66 GGGCGCAACCCA
* * * * *
9731457 TTTTTTTACTAAAAATATTAACATTGCATATCGCAATATATTTCTTAGTGAA-CATGACATTCT
1 TTTTATTAATAAAAATATTAACATTCCAGATCGCAACATATTTCTTAGTGAACCATGACATTCT
9731520 CGGGGGAAAC
Statistics
Matches: 117, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
76 72 0.62
77 41 0.35
78 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (77 bp):
TTTTATTAATAAAAATATTAACATTCCAGATCGCAACATATTTCTTAGTGAACCATGACATTCTT
GGGCGCAACCCA
Found at i:9732044 original size:14 final size:14
Alignment explanation
Indices: 9732025--9732051 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9732015 TCATTTTTAC
9732025 TTCTATTTTATTTT
1 TTCTATTTTATTTT
9732039 TTCTATTTTATTT
1 TTCTATTTTATTT
9732052 CTATTCTAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (14 bp):
TTCTATTTTATTTT
Found at i:9732053 original size:25 final size:24
Alignment explanation
Indices: 9732019--9732089 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 24
9732009 AGACACTCAT
*
9732019 TTTTACTTCTATTTTATTTTTTCTA
1 TTTTATTTCTATTTTATTTTTT-TA
* *
9732044 TTTTATTTCTATTCTAGTTTTTTA
1 TTTTATTTCTATTTTATTTTTTTA
9732068 TCTTTATTTC-ATTTATATTTTT
1 T-TTTATTTCTATTT-TATTTTT
9732090 ATTGCAAACC
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
24 6 0.15
25 33 0.85
ACGTcount: A:0.17, C:0.10, G:0.01, T:0.72
Consensus pattern (24 bp):
TTTTATTTCTATTTTATTTTTTTA
Found at i:9733637 original size:14 final size:14
Alignment explanation
Indices: 9733618--9733644 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
9733608 TCGTTTTTGC
9733618 TTCTATTTTATTTT
1 TTCTATTTTATTTT
9733632 TTCTATTTTATTT
1 TTCTATTTTATTT
9733645 CTATTCTAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (14 bp):
TTCTATTTTATTTT
Found at i:9733646 original size:25 final size:25
Alignment explanation
Indices: 9733618--9733682 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
9733608 TCGTTTTTGC
9733618 TTCTATTTTATTTTTTCTAT-TTTAT
1 TTCTATTTTATTTTTT-TATCTTTAT
* *
9733643 TTCTATTCTAGTTTTTTATCTTTAT
1 TTCTATTTTATTTTTTTATCTTTAT
9733668 TTC-ATTTATATTTTT
1 TTCTATTT-TATTTTT
9733683 ATTGCAAACC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 6 0.18
25 28 0.82
ACGTcount: A:0.17, C:0.09, G:0.02, T:0.72
Consensus pattern (25 bp):
TTCTATTTTATTTTTTTATCTTTAT
Found at i:9735256 original size:35 final size:36
Alignment explanation
Indices: 9735210--9735290 Score: 128
Period size: 35 Copynumber: 2.3 Consensus size: 36
9735200 AACACAATCA
9735210 TCAATTACATTCTAAACCCCAAAATCC-AAAATACT
1 TCAATTACATTCTAAACCCCAAAATCCAAAAATACT
* *
9735245 TCAATTACATTCTAAACCTCAAATTCCAAAAATACT
1 TCAATTACATTCTAAACCCCAAAATCCAAAAATACT
*
9735281 TCATTTACAT
1 TCAATTACAT
9735291 GGCCAACCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
35 25 0.60
36 17 0.40
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.31
Consensus pattern (36 bp):
TCAATTACATTCTAAACCCCAAAATCCAAAAATACT
Found at i:9735305 original size:36 final size:34
Alignment explanation
Indices: 9735210--9735306 Score: 86
Period size: 36 Copynumber: 2.7 Consensus size: 34
9735200 AACACAATCA
* * * *
9735210 TCAATTACATTCTAAACCCCAAAATCCAAAATACT
1 TCAATTACATGC-CAACCCTAAATTCCAAAATACT
* * *
9735245 TCAATTACATTCTAAACCTCAAATTCCAAAAATACT
1 TCAATTACATGCCAACCCT-AAATTCC-AAAATACT
*
9735281 TCATTTACATGGCCAACCCTAAATTC
1 TCAATTACAT-GCCAACCCTAAATTC
9735307 ATAATTCATT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
34 4 0.08
35 18 0.35
36 23 0.45
37 6 0.12
ACGTcount: A:0.41, C:0.28, G:0.02, T:0.29
Consensus pattern (34 bp):
TCAATTACATGCCAACCCTAAATTCCAAAATACT
Found at i:9735942 original size:148 final size:148
Alignment explanation
Indices: 9735780--9736072 Score: 451
Period size: 148 Copynumber: 2.0 Consensus size: 148
9735770 AAACTATTTA
* * * * *
9735780 AATTAGAATCAAATAATATTATAGTATTATAAATATTTATAATTAAATTTAATCAGAAACTTGGA
1 AATTAGAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAACAGAAACTCGAA
* *
9735845 AATTCAGTTCAATTCGACTTGATTTAAATTTTATAAACTCAAATCGAAAAAAATTCAAGTAAACT
66 AATTCAATTCAATTCGACTTGATTGAAATTTTATAAACTCAAATCGAAAAAAATTCAAGTAAACT
*
9735910 ATTTTATAAACTGAACTG
131 ATTTAATAAACTGAACTG
* *
9735928 AATTAGAATCAAATAATATTATAATATGATACATATTTATAATTAAATTTAAACATAAACTCGAA
1 AATTAGAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAACAGAAACTCGAA
* * ** *
9735993 AATTCAATTCAATTCGACTTGATTGAAATTTTATAAATTCAAATCGAAAATAATTTGAGTCAACT
66 AATTCAATTCAATTCGACTTGATTGAAATTTTATAAACTCAAATCGAAAAAAATTCAAGTAAACT
9736058 ATTTAATAAACTGAA
131 ATTTAATAAACTGAA
9736073 TTGAGTATTT
Statistics
Matches: 130, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
148 130 1.00
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.36
Consensus pattern (148 bp):
AATTAGAATCAAATAATATTATAATATGATAAATATTTATAATTAAATTTAAACAGAAACTCGAA
AATTCAATTCAATTCGACTTGATTGAAATTTTATAAACTCAAATCGAAAAAAATTCAAGTAAACT
ATTTAATAAACTGAACTG
Found at i:9736270 original size:35 final size:35
Alignment explanation
Indices: 9736231--9736324 Score: 91
Period size: 35 Copynumber: 2.7 Consensus size: 35
9736221 AATGTATTAT
* *
9736231 GAATTTGGGGTTGGA-CATGTAATTGAAGTATTTTA
1 GAATTTGGGGTT-GATAATGTAATTGAAATATTTTA
* * * *
9736266 GAATTTGAGGTTTATAATGTAATTGAAATGTTTTG
1 GAATTTGGGGTTGATAATGTAATTGAAATATTTTA
* * *
9736301 GATTTTGGGGTTTATAATATAATT
1 GAATTTGGGGTTGATAATGTAATT
9736325 AATGATTGTG
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
34 1 0.02
35 48 0.98
ACGTcount: A:0.30, C:0.01, G:0.24, T:0.45
Consensus pattern (35 bp):
GAATTTGGGGTTGATAATGTAATTGAAATATTTTA
Found at i:9737344 original size:17 final size:16
Alignment explanation
Indices: 9737315--9737356 Score: 52
Period size: 15 Copynumber: 2.6 Consensus size: 16
9737305 AAATGCATAT
9737315 AATT-TTTTATCTTTTAA
1 AATTATTTTATC--TTAA
9737332 AATTATTTT-TCTTAA
1 AATTATTTTATCTTAA
9737347 AATTATTTTA
1 AATTATTTTA
9737357 AATGATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 13 0.57
17 6 0.26
18 4 0.17
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (16 bp):
AATTATTTTATCTTAA
Found at i:9740122 original size:24 final size:24
Alignment explanation
Indices: 9740095--9740162 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 24
9740085 AGTAGAACAT
*
9740095 GAACAACAAAGAAGCAGTATA-CCA
1 GAACAATAAAGAAGCAGTA-AGCCA
*
9740119 GAACAATGAAGAAGCAGTAAGCCA
1 GAACAATAAAGAAGCAGTAAGCCA
* *
9740143 GACCAATTAAGAAGCAGTAA
1 GAACAATAAAGAAGCAGTAA
9740163 ACACAAATCG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 1 0.03
24 38 0.97
ACGTcount: A:0.51, C:0.18, G:0.21, T:0.10
Consensus pattern (24 bp):
GAACAATAAAGAAGCAGTAAGCCA
Found at i:9752059 original size:37 final size:37
Alignment explanation
Indices: 9752009--9752085 Score: 154
Period size: 37 Copynumber: 2.1 Consensus size: 37
9751999 TAACTTTCAC
9752009 AAAAGTGCATTGAATCATGTGTCTTTATTTATAGGGT
1 AAAAGTGCATTGAATCATGTGTCTTTATTTATAGGGT
9752046 AAAAGTGCATTGAATCATGTGTCTTTATTTATAGGGT
1 AAAAGTGCATTGAATCATGTGTCTTTATTTATAGGGT
9752083 AAA
1 AAA
9752086 CTACATCAGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (37 bp):
AAAAGTGCATTGAATCATGTGTCTTTATTTATAGGGT
Found at i:9753072 original size:3 final size:3
Alignment explanation
Indices: 9753064--9753089 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
9753054 GTTCTGGTTC
9753064 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
9753090 TATAATAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:9754041 original size:20 final size:20
Alignment explanation
Indices: 9754016--9754061 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
9754006 TCCTAACGGC
*
9754016 GGAGGAGCGAAGAGAGAATG
1 GGAGGAGCGAAGAGAGAAGG
9754036 GGAGGAGCGAAGAGAGAAGG
1 GGAGGAGCGAAGAGAGAAGG
9754056 GGAGGA
1 GGAGGA
9754062 AAGTTGAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.39, C:0.04, G:0.54, T:0.02
Consensus pattern (20 bp):
GGAGGAGCGAAGAGAGAAGG
Found at i:9760310 original size:2 final size:2
Alignment explanation
Indices: 9760303--9760342 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
9760293 TTCTAAACAA
9760303 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9760343 CACAATTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9762846 original size:43 final size:45
Alignment explanation
Indices: 9762794--9762885 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 45
9762784 TATTTTATGT
* *
9762794 AATCACAC-TTTTTATTTTTATAATTGA-GACAATTAATTTTTTC
1 AATCACACTTTTTTATATTTATAATTGATGACAATGAATTTTTTC
* * *
9762837 AATCCCACTTTTTTATATTTATAATTGATGACCATGATTTTTTTC
1 AATCACACTTTTTTATATTTATAATTGATGACAATGAATTTTTTC
9762882 AATC
1 AATC
9762886 TCATTTTACC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 7 0.17
44 18 0.43
45 17 0.40
ACGTcount: A:0.30, C:0.14, G:0.05, T:0.50
Consensus pattern (45 bp):
AATCACACTTTTTTATATTTATAATTGATGACAATGAATTTTTTC
Found at i:9762968 original size:41 final size:40
Alignment explanation
Indices: 9762889--9763045 Score: 147
Period size: 41 Copynumber: 3.8 Consensus size: 40
9762879 TTCAATCTCA
* *
9762889 TTTTACCTTT-ATATTGAACTCCT-ATTTTTTCAATTTCACT
1 TTTTACCTTTAAAATTGAAGTCCTAATTTTTT-AA-TTCACT
* * *
9762929 TTTTACCTTTATAATTGAAGTACCTAATCTTTTAATTCACA
1 TTTTACCTTTAAAATTGAAGT-CCTAATTTTTTAATTCACT
* * *
9762970 TTTTACCTTTAAAATCGAGGCCTCTAATTTTTTTAATCTCACT
1 TTTTACCTTTAAAATTGAAGTC-CTAA-TTTTTTAAT-TCACT
* *
9763013 TTTTACCTTTAAAATTGATGCCCCTAATTTTTT
1 TTTTACCTTTAAAATTGAAG-TCCTAATTTTTT
9763046 TTCAATCATA
Statistics
Matches: 97, Mismatches: 13, Indels: 12
0.80 0.11 0.10
Matches are distributed among these distances:
40 11 0.11
41 33 0.34
42 19 0.20
43 32 0.33
44 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.05, T:0.50
Consensus pattern (40 bp):
TTTTACCTTTAAAATTGAAGTCCTAATTTTTTAATTCACT
Found at i:9763021 original size:43 final size:41
Alignment explanation
Indices: 9762912--9763046 Score: 146
Period size: 43 Copynumber: 3.2 Consensus size: 41
9762902 TTGAACTCCT
* * **
9762912 ATTTTTTCAATTTCACTTTTTACCTTTATAATTGAAGTACCTA
1 ATTTTTTTAA-TTCACTTTTTACCTTTAAAATTG-AGGCCCTA
* * *
9762955 A-TCTTTTAATTCACATTTTACCTTTAAAATCGAGGCCTCTA
1 ATTTTTTTAATTCACTTTTTACCTTTAAAATTGAGGCC-CTA
*
9762996 ATTTTTTTAATCTCACTTTTTACCTTTAAAATTGATGCCCCTA
1 ATTTTTTTAAT-TCACTTTTTACCTTTAAAATTGA-GGCCCTA
9763039 ATTTTTTT
1 ATTTTTTT
9763047 TCAATCATAA
Statistics
Matches: 77, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
40 3 0.04
41 24 0.31
42 14 0.18
43 33 0.43
44 3 0.04
ACGTcount: A:0.27, C:0.19, G:0.05, T:0.50
Consensus pattern (41 bp):
ATTTTTTTAATTCACTTTTTACCTTTAAAATTGAGGCCCTA
Found at i:9763062 original size:45 final size:43
Alignment explanation
Indices: 9762873--9763073 Score: 141
Period size: 41 Copynumber: 4.8 Consensus size: 43
9762863 GATGACCATG
* * *
9762873 ATTTTTTTCAATCTC-A-TTTTACCTTT-ATATTGA-ACTCCT-
1 ATTTTTTT-AATCTCAATTTTTACCTTTAAAATTGAGGCCCCTA
* * * * * **
9762912 ATTTTTTCAATTTCACTTTTTACCTTTATAATTGAAGTACCTA
1 ATTTTTTTAATCTCAATTTTTACCTTTAAAATTGAGGCCCCTA
* * *
9762955 A-TCTTTTAAT-TCACA-TTTTACCTTTAAAATCGAGGCCTCTA
1 ATTTTTTTAATCTCA-ATTTTTACCTTTAAAATTGAGGCCCCTA
* *
9762996 ATTTTTTTAATCTCACTTTTTACCTTTAAAATTGATGCCCCTA
1 ATTTTTTTAATCTCAATTTTTACCTTTAAAATTGAGGCCCCTA
* *
9763039 ATTTTTTTTCAATCAT-AATTTTTACTTTTATAATT
1 A-TTTTTTT-AATC-TCAATTTTTACCTTTAAAATT
9763074 TAAAGCCCTA
Statistics
Matches: 125, Mismatches: 25, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
38 5 0.04
39 7 0.06
40 10 0.08
41 29 0.23
42 18 0.14
43 28 0.22
44 7 0.06
45 20 0.16
46 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.04, T:0.51
Consensus pattern (43 bp):
ATTTTTTTAATCTCAATTTTTACCTTTAAAATTGAGGCCCCTA
Found at i:9769794 original size:20 final size:19
Alignment explanation
Indices: 9769769--9769825 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 19
9769759 TGTTTCGTTC
*
9769769 CCCTTAGAATTTTAGTTTGT
1 CCCTTA-AATTTTAGTTTAT
9769789 CCCTTAAAATTTTAGTTTAT
1 CCCTT-AAATTTTAGTTTAT
9769809 CCCTTTAAATTTTAGTT
1 CCC-TTAAATTTTAGTT
9769826 CCCCCACATA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
20 31 0.91
21 3 0.09
ACGTcount: A:0.25, C:0.16, G:0.09, T:0.51
Consensus pattern (19 bp):
CCCTTAAATTTTAGTTTAT
Found at i:9770361 original size:14 final size:14
Alignment explanation
Indices: 9770342--9770382 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
9770332 TAAAATGACA
*
9770342 AACGAACACAAATG
1 AACGAACACAAACG
9770356 AACGAACACAAACG
1 AACGAACACAAACG
* *
9770370 AACTAACATAAAC
1 AACGAACACAAAC
9770383 AAACATAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.59, C:0.24, G:0.10, T:0.07
Consensus pattern (14 bp):
AACGAACACAAACG
Found at i:9771692 original size:6 final size:6
Alignment explanation
Indices: 9771681--9773826 Score: 3975
Period size: 6 Copynumber: 360.2 Consensus size: 6
9771671 AAACAAAAGG
9771681 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9771729 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9771777 CATATA C--ATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9771823 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9771871 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9771919 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9771967 CATATA CATATA CATATA C--ATA CA-ATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772012 CATATA CATATA CATATA CATATA CATATA CATACATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CAT--ATA CATATA CATATA
9772062 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772110 CATATA CATATA CATATA C--ATA CATATA CATATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA C--ATATA CATATA CATATA
9772158 CATATA CATATA CATATA CATATA CATATA CATATA C--ATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772204 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772252 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772300 C--ATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
* * * *
9772346 CATATA CATATA CATATA TACATA CACATA CATATA CATACATA TATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CAT--ATA CATATA
9772396 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772444 CATACACTA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CAT--A-TA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772495 CATATA CATATA CATATA C--ATA CATATA CATATACA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATAT--A CATATA CATATA
9772543 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772591 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772639 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772687 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772735 C--ATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772781 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772829 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772877 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772925 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9772973 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773021 CATATA C--ATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773067 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773115 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773163 CATATA CATATA CATATA C--ATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773209 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773257 CATATA CATATA CATATA C--ATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773303 CATATA CATATA CATATA CATATA C--ATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773349 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773397 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773445 CATATA CATATA CATATA CATATA CATATA CATA-A CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773492 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773540 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773588 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773636 CATATA CATATA CATATA CATATA CATATA C--ATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773682 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773730 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773778 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
9773826 C
1 C
9773827 GAATTTTTTC
Statistics
Matches: 2098, Mismatches: 6, Indels: 72
0.96 0.00 0.03
Matches are distributed among these distances:
4 48 0.02
5 10 0.00
6 2010 0.96
7 1 0.00
8 24 0.01
9 5 0.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
CATATA
Found at i:9774206 original size:2 final size:2
Alignment explanation
Indices: 9774194--9774241 Score: 69
Period size: 2 Copynumber: 24.0 Consensus size: 2
9774184 CTAAGGAAAA
* * *
9774194 AT AT AT GT AT AT AT GT AT GT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9774236 AT AT AT
1 AT AT AT
9774242 TTAGGGTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9775390 original size:28 final size:28
Alignment explanation
Indices: 9775344--9775398 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
9775334 CCAAAACCCA
9775344 CCAAATCGAAGCCTTGTTTAT-CTTAAAC
1 CCAAATCGAAGCCTTGTTT-TGCTTAAAC
*
9775372 CCAAATCTAAG-CTTAGTTTTGCTTAAA
1 CCAAATCGAAGCCTT-GTTTTGCTTAAA
9775399 AATCTACCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (28 bp):
CCAAATCGAAGCCTTGTTTTGCTTAAAC
Found at i:9776041 original size:3 final size:3
Alignment explanation
Indices: 9776033--9776100 Score: 57
Period size: 3 Copynumber: 23.0 Consensus size: 3
9776023 AATTATTTAT
* * * * * * *
9776033 TAA TAA TAA CAA AAA TAA AAA TAA -AA TAA TTA TAA TAA TTA TTA TTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
9776080 TAA TAA TAA TAA AAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
9776101 AATCGGGATA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
2 2 0.04
3 51 0.96
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:9776289 original size:39 final size:39
Alignment explanation
Indices: 9776238--9776314 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
9776228 GTTGAATAAG
*
9776238 TTCTTCTTTGGGACTAGTTCTTCTCATTATGAACTCTTC
1 TTCTACTTTGGGACTAGTTCTTCTCATTATGAACTCTTC
*
9776277 TTCTACTTTGGGATTAGTTCTTCTCATTATGAACTCTT
1 TTCTACTTTGGGACTAGTTCTTCTCATTATGAACTCTT
9776315 GGCGGGAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.17, C:0.21, G:0.13, T:0.49
Consensus pattern (39 bp):
TTCTACTTTGGGACTAGTTCTTCTCATTATGAACTCTTC
Found at i:9776968 original size:26 final size:25
Alignment explanation
Indices: 9776933--9776986 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 25
9776923 TTCTTTGATA
9776933 TTAAAAAATAAATAAATAT-TATTAT
1 TTAAAAAATAAATAAATATATA-TAT
* *
9776958 TTAAACAAATATATATATATATATAT
1 TTAAA-AAATAAATAAATATATATAT
9776984 TTA
1 TTA
9776987 TATGACTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 5 0.20
26 18 0.72
27 2 0.08
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (25 bp):
TTAAAAAATAAATAAATATATATAT
Found at i:9778367 original size:3 final size:3
Alignment explanation
Indices: 9778361--9778420 Score: 81
Period size: 3 Copynumber: 21.0 Consensus size: 3
9778351 ATTTATTATT
*
9778361 TAA TAA TAA TAA TAA T-A TAA -CA TAA TAA TAA TAA TAA TAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
9778406 TAA TAA TAC TAA TAA
1 TAA TAA TAA TAA TAA
9778421 AAATGATATA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
2 5 0.10
3 45 0.90
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:9778431 original size:23 final size:23
Alignment explanation
Indices: 9778361--9778424 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
9778351 ATTTATTATT
* *
9778361 TAATAATAATAAT-AATATAACA
1 TAATAATAATAATAAAAATAAAA
*
9778383 TAATAATAATAATAATAATAAAA
1 TAATAATAATAATAAAAATAAAA
*
9778406 TAATAATACTAATAAAAAT
1 TAATAATAATAATAAAAAT
9778425 GATATAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
22 13 0.36
23 23 0.64
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (23 bp):
TAATAATAATAATAAAAATAAAA
Found at i:9779053 original size:226 final size:221
Alignment explanation
Indices: 9778785--9780109 Score: 1583
Period size: 226 Copynumber: 5.9 Consensus size: 221
9778775 TCAAGCTAAA
* * *
9778785 GTTGAACAAGTTCTTCTCATCATGAACTTCTTCTTCC-TCTTCAGATAAGTTCTTCTTATTATGA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
* * * * * *
9778849 ACTATACATGGAAATATTGATCCATC-G-A-TCAAGCTAAA-GTTGAATAAGTTCTTCTCATTAT
66 ACTCTACCTGGCAATGTTGATCCATCGGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTAT
* *
9778910 GAACTTCTTTTTCC-TCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTTGAAAAGGCTCTGA
131 GAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC-TGAAAATG-TCTGA
*** * * * *
9778974 TGCTCTATCTCTTTCTTGAAATGGAGTCAAGAAAAAG
194 T-C-C-A--TC--GAGTG--ATGAATTCGAGCAAAAG
9779011 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTCATTATGA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
*
9779075 ACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCT
66 ACTCTACCTGGCAATGTTGATCCATC----G--GAATTCAAGCAAAAGGTTGAACAAGTTCTTCT
**
9779140 CATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATG-
125 CATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGAAAATGT
9779204 CTGATCCATCGAGTGATGAATTCGAGCAAAAG
190 CTGATCCATCGAGTGATGAATTCGAGCAAAAG
*
9779236 GTTGAACAAGTTCTTCTCATTATGAACTTCTTTTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
* *
9779301 ACTCTACTTGGCAATGTTGATCCATCGAGTGATGAATTCAAGCAAAAGGTTGAACAAGTTATTCT
66 ACTCTACCTGGCAATGTTGATCCATC----G--GAATTCAAGCAAAAGGTTGAACAAGTTCTTCT
* * **
9779366 CATTACGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCTACCTGGCAATGT
125 CATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGAAAATGT
9779431 -TGATCCATCGAGTGATGAATTCGAGCAAAAG
190 CTGATCCATCGAGTGATGAATTCGAGCAAAAG
9779462 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
* * * *
9779527 ACTCTACCTGGCAATGCTGATCCATCGAGTAATGAATTCGAGTAAAAAGTTGAACAAGTTCTTCT
66 ACTCTACCTGGCAATGTTGATCCATC--G----GAATTCAAGCAAAAGGTTGAACAAGTTCTTCT
* *
9779592 CATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAAT-A
125 CATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGAAAATGT
* *
9779656 CTGATCCATCGAGTGATGAATTCGAGAAAAAT
190 CTGATCCATCGAGTGATGAATTCGAGCAAAAG
* * *
9779688 ATTGAACAAGTTTTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
* * * *
9779753 ACTCTACTTGGCAATGCTGATCCATCGAGTGATGAATT-AGAGTAAAAGGTTGAACAAGTTTTTC
66 ACTCTACCTGGCAATGTTGATCCATC----G--GAATTCA-AGCAAAAGGTTGAACAAGTTCTTC
**
9779817 TCATTATGAA------CTT-CTTCTTC-----A-TTCTTCTCATTATGAACTCTACCTGGCAATG
124 TCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGAAAATG
* *
9779869 T-TGATCCATCGAGTGATGAATTCGAACAAAAT
189 TCTGATCCATCGAGTGATGAATTCGAGCAAAAG
*
9779901 GTTGAACAAGTTCTTCTCATTATGAAATTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
1 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
* *
9779966 ACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAATGTTGAACAAGTTCTTCT
66 ACTCTACCTGGCAATGTTGATCCATC----G--GAATTCAAGCAAAAGGTTGAACAAGTTCTTCT
* * **
9780031 CATTATGAA---CTTCTTCCATCTTCAAATGAGTTCTTCTCATTATGAACTCTACCTGGCAATG-
125 CATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGAAAATGT
9780092 CTGATCCATCGAGTGATG
190 CTGATCCATCGAGTGATG
9780110 GATTTGAATC
Statistics
Matches: 1004, Mismatches: 63, Indels: 67
0.89 0.06 0.06
Matches are distributed among these distances:
213 187 0.19
214 1 0.00
216 3 0.00
217 6 0.01
219 7 0.01
220 3 0.00
222 1 0.00
223 48 0.05
224 2 0.00
225 49 0.05
226 598 0.60
227 2 0.00
228 2 0.00
229 2 0.00
231 1 0.00
232 1 0.00
233 2 0.00
234 6 0.01
235 8 0.01
236 40 0.04
237 35 0.03
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (221 bp):
GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGA
ACTCTACCTGGCAATGTTGATCCATCGGAATTCAAGCAAAAGGTTGAACAAGTTCTTCTCATTAT
GAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGAAAATGTCTGATC
CATCGAGTGATGAATTCGAGCAAAAG
Found at i:9779203 original size:113 final size:113
Alignment explanation
Indices: 9779006--9780109 Score: 1810
Period size: 113 Copynumber: 9.9 Consensus size: 113
9778996 GGAGTCAAGA
9779006 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
9779070 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
66 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAGC
9779118 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
9779183 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAGC
66 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAGC
*
9779231 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTTTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
9779296 TATGAACTCTACTTGGCAATGTTGATCCATCGAGTGATGAATTCAAGC
66 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAGC
* * *
9779344 AAAAGGTTGAACAAGTTATTCTCATTACGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
9779409 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
66 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAGC
9779457 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
9779522 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTAATGAATTCGAGT
66 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAGC
*
9779570 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
9779635 TATGAACTCTACCTGGAAATACTGATCCATCGAGTGATGAATTCGAGA
66 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAGC
** * *
9779683 AAAATATTGAACAAGTTTTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
9779748 TATGAACTCTACTTGGCAATGCTGATCCATCGAGTGATGAATTAGAGT
66 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAGC
*
9779796 AAAAGGTTGAACAAGTTTTTCTCATTATGAA------CTT-CTTCTTC-----A-TTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
9779848 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAAC
66 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAGC
* *
9779896 AAAATGTTGAACAAGTTCTTCTCATTATGAAATTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
9779961 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
66 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAGC
* * *
9780009 AAAATGTTGAACAAGTTCTTCTCATTATGAA---CTTCTTCCATCTTCAAATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
9780071 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATG
66 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATG
9780110 GATTTGAATC
Statistics
Matches: 934, Mismatches: 44, Indels: 30
0.93 0.04 0.03
Matches are distributed among these distances:
100 82 0.09
101 1 0.00
106 10 0.01
107 10 0.01
110 67 0.07
112 43 0.05
113 721 0.77
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (113 bp):
AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAGC
Found at i:9779426 original size:339 final size:337
Alignment explanation
Indices: 9778679--9780109 Score: 1909
Period size: 339 Copynumber: 4.3 Consensus size: 337
9778669 GATCAAATCT
* * *
9778679 AGCAAAAGGTTGAACAAGTTCTTCTCATTTTGAA--CTTCTTCCTT-TTCAGATGAATTTTTCTC
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAATTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * * *
9778741 ATTATGAACTCT-TCTGGAAATGTTGATCCATC-------G-A-TCAAGCTAAA-GTTGAACAAG
66 ATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAG
* * * * *
9778795 TTCTTCTCATCATGAACTTCTTCTTCC-TCTTCAGATAAGTTCTTCTTATTATGAACTATACATG
131 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
* ** * * *
9778859 GAAATATTGATCCATC-------G-A-TCAAGCTAAAGTTGAATAAGTTCTTCTCATTATGAACT
196 GCAATGCTGATCCATCGAGTGATGAATTCGAGCAAAAGTTGAACAAGTTCTTCTCATTATGAACT
* * *
9778915 TCTTTTTCC-TCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTTGAAAAGGCTCTGATGCTC
261 TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC-TGGAAATG-T-TGAT-C-C
*** * *
9778979 TATCTCTTTCTTGAAATGGAGTCA
321 -A--TC--GAGTG--ATGAATTCA
*
9779003 AGAAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAGATGAGTTCTTCT
9779067 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAA
65 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAA
9779132 GTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
130 GTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
9779197 GGCAATGCTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAA
195 GGCAATGCTGATCCATCGAGTGATGAATTCGAGCAAAA-GTTGAACAAGTTCTTCTCATTATGAA
* * *
9779262 CTTCTTTTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACTTGGCAATGTTGATCCATC
259 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAATGTTGATCCATC
9779327 GAGTGATGAATTCA
324 GAGTGATGAATTCA
* * *
9779341 AGCAAAAGGTTGAACAAGTTATTCTCATTACGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAGATGAGTTCTTCT
9779406 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAA
65 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAA
9779471 GTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
130 GTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
* *
9779536 GGCAATGCTGATCCATCGAGTAATGAATTCGAGTAAAAAGTTGAACAAGTTCTTCTCATTATGAA
195 GGCAATGCTGATCCATCGAGTGATGAATTCGAG-CAAAAGTTGAACAAGTTCTTCTCATTATGAA
**
9779601 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAATACTGATCCATC
259 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAATGTTGATCCATC
*
9779666 GAGTGATGAATTCG
324 GAGTGATGAATTCA
* ** *
9779680 AGAAAAATATTGAACAAGTTTTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * * *
9779745 CATTATGAACTCTACTTGGCAATGCTGATCCATCGAGTGATGAATTAGAGTAAAAGGTTGAACAA
65 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAA
*
9779810 GTTTTTCTCATTATGAA------CTT-CTTCTTC-----A-TTCTTCTCATTATGAACTCTACCT
130 GTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
* *
9779862 GGCAATGTTGATCCATCGAGTGATGAATTCGAACAAAATGTTGAACAAGTTCTTCTCATTATGAA
195 GGCAATGCTGATCCATCGAGTGATGAATTCGAGCAAAA-GTTGAACAAGTTCTTCTCATTATGAA
* *
9779927 ATTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATC
259 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAATGTTGATCCATC
*
9779992 GAGTGATGAATTCG
324 GAGTGATGAATTCA
* * *
9780006 AGCAAAATGTTGAACAAGTTCTTCTCATTATGAA--CTTCTTCCATCTTCAAATGAGTTCTTCTC
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAATTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
*
9780069 ATTATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATG
66 ATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATG
9780110 GATTTGAATC
Statistics
Matches: 1011, Mismatches: 66, Indels: 61
0.89 0.06 0.05
Matches are distributed among these distances:
323 67 0.07
324 32 0.03
325 4 0.00
326 187 0.18
327 37 0.04
328 18 0.02
332 7 0.01
333 3 0.00
335 1 0.00
336 1 0.00
337 8 0.01
338 85 0.08
339 460 0.45
340 6 0.01
342 2 0.00
344 1 0.00
345 1 0.00
346 2 0.00
347 5 0.00
348 9 0.01
349 41 0.04
350 34 0.03
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (337 bp):
AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAATTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAG
TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
GCAATGCTGATCCATCGAGTGATGAATTCGAGCAAAAGTTGAACAAGTTCTTCTCATTATGAACT
TCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAATGTTGATCCATCGA
GTGATGAATTCA
Found at i:9785034 original size:72 final size:72
Alignment explanation
Indices: 9784917--9785052 Score: 213
Period size: 72 Copynumber: 1.9 Consensus size: 72
9784907 GTATAATAGG
* * *
9784917 TTAGCTGAAACTTATCCATAAAGCCGGGTTGATTAACCAATTGCTTTAGGGGGATAACTCAAGCA
1 TTAGCTGAAACTTATCCATAAAGCAGGGCTGATTAACCAATTGCTTTAAGGGGATAACTCAAGCA
9784982 TAACAGA
66 TAACAGA
9784989 TTAGCTGAATA-TTATCCATAAAGCTAGGGCT-ATTAACCAATTGCTTTAAGGGGATAACTCAAG
1 TTAGCTGAA-ACTTATCCATAAAGC-AGGGCTGATTAACCAATTGCTTTAAGGGGATAACTCAAG
9785052 C
64 C
9785053 TTTATTGTAT
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
72 54 0.92
73 5 0.08
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.28
Consensus pattern (72 bp):
TTAGCTGAAACTTATCCATAAAGCAGGGCTGATTAACCAATTGCTTTAAGGGGATAACTCAAGCA
TAACAGA
Found at i:9788211 original size:36 final size:36
Alignment explanation
Indices: 9788164--9788233 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
9788154 TCTTACTGTA
*
9788164 GAATACTTTTGGTATCAATCTAACAGGATCTTTGTG
1 GAATACTTTTGGTATCAATATAACAGGATCTTTGTG
*
9788200 GAATACTTTTGGTATTAATATAACAGGATCTTTG
1 GAATACTTTTGGTATCAATATAACAGGATCTTTG
9788234 AGTGCATAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (36 bp):
GAATACTTTTGGTATCAATATAACAGGATCTTTGTG
Found at i:9789904 original size:2 final size:2
Alignment explanation
Indices: 9789897--9789922 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
9789887 ATTTAAACAA
9789897 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
9789923 GACTAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9791316 original size:3 final size:3
Alignment explanation
Indices: 9791310--9791373 Score: 78
Period size: 3 Copynumber: 22.0 Consensus size: 3
9791300 ATTTATTATT
* *
9791310 TAA TAA TAA TAA T-A TAA -CA TAA TAA TAA TAA TAT TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
9791356 AAA TAA TAA TAC TAA TAA
1 TAA TAA TAA TAA TAA TAA
9791374 AAATGATACA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
2 3 0.06
3 48 0.94
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:9791408 original size:6 final size:6
Alignment explanation
Indices: 9791397--9791965 Score: 1025
Period size: 6 Copynumber: 93.5 Consensus size: 6
9791387 ATTTAGTGGC
9791397 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
1 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
9791445 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
1 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
9791493 TACACA TACACA T--ACA TACACA TACACA TACACA TACACA TACACA
1 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
9791539 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
1 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
9791587 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
1 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
9791635 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
1 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
9791683 TACACA TACACA TACACA TACACA TACACACA TACACA TACACACA TACACA
1 TACACA TACACA TACACA TACACA T--ACACA TACACA T--ACACA TACACA
9791735 TACACA TACACACA TACACA TACACA TACACA TACACA TACACA TACACA
1 TACACA T--ACACA TACACA TACACA TACACA TACACA TACACA TACACA
9791785 TACACA TACACA TACACA TACACACA TACACA TACACACA TACACA TACACA
1 TACACA TACACA TACACA T--ACACA TACACA T--ACACA TACACA TACACA
9791837 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
1 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
9791885 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
1 TACACA TACACA TACACA TACACA TACACA TACACA TACACA TACACA
*
9791933 TACACA TACACA TACACA TACACA TACATA TAC
1 TACACA TACACA TACACA TACACA TACACA TAC
9791966 GAATTTTTTC
Statistics
Matches: 550, Mismatches: 1, Indels: 24
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.01
6 516 0.94
8 30 0.05
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (6 bp):
TACACA
Found at i:9792355 original size:2 final size:2
Alignment explanation
Indices: 9792342--9792384 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
9792332 AATATGTATG
*
9792342 TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9792384 T
1 T
9792385 TTAGGGTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:9794175 original size:3 final size:3
Alignment explanation
Indices: 9794167--9794234 Score: 66
Period size: 3 Copynumber: 23.0 Consensus size: 3
9794157 AATTATTTAT
* * * * * *
9794167 TAA TAA TAA CAA AAA TAA AAA TAA -AA TAA TTA TAA TAA TAA TTA TTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
9794214 TAA TAA TAA TAA AAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA
9794235 AATCGGGATA
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
2 2 0.04
3 51 0.96
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:9794394 original size:20 final size:20
Alignment explanation
Indices: 9794369--9794436 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
9794359 ATGTTGAATA
9794369 AGTTCTTCTTCTTTGGGACT
1 AGTTCTTCTTCTTTGGGACT
*
9794389 AGTTCTTC-TCATTAT-GAACT
1 AGTTCTTCTTC-TT-TGGGACT
* * *
9794409 -CTTCTTCTGCTTTGGGATT
1 AGTTCTTCTTCTTTGGGACT
9794428 AGTTCTTCT
1 AGTTCTTCT
9794437 CATTATGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
18 1 0.03
19 13 0.35
20 22 0.59
21 1 0.03
ACGTcount: A:0.13, C:0.21, G:0.16, T:0.50
Consensus pattern (20 bp):
AGTTCTTCTTCTTTGGGACT
Found at i:9794423 original size:39 final size:39
Alignment explanation
Indices: 9794371--9794450 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
9794361 GTTGAATAAG
*
9794371 TTCTTCTTCTTTGGGACTAGTTCTTCTCATTATGAACTC
1 TTCTTCTGCTTTGGGACTAGTTCTTCTCATTATGAACTC
*
9794410 TTCTTCTGCTTTGGGATTAGTTCTTCTCATTATGAACTC
1 TTCTTCTGCTTTGGGACTAGTTCTTCTCATTATGAACTC
9794449 TT
1 TT
9794451 GGTGGGAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.15, C:0.21, G:0.14, T:0.50
Consensus pattern (39 bp):
TTCTTCTGCTTTGGGACTAGTTCTTCTCATTATGAACTC
Found at i:9795078 original size:2 final size:2
Alignment explanation
Indices: 9795071--9795096 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
9795061 ATTTAAACAA
9795071 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
9795097 GACTAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9796474 original size:3 final size:3
Alignment explanation
Indices: 9796468--9796530 Score: 87
Period size: 3 Copynumber: 22.0 Consensus size: 3
9796458 ATTTATTATT
*
9796468 TAA TAA TAA TAA TAA T-A TAA -CA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
9796514 -AA TAA TAA TAC TAA TAA
1 TAA TAA TAA TAA TAA TAA
9796531 AAATTATATA
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
2 5 0.09
3 48 0.91
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:9796999 original size:102 final size:100
Alignment explanation
Indices: 9796798--9797062 Score: 374
Period size: 102 Copynumber: 2.6 Consensus size: 100
9796788 CTAGCAAAAG
* * *
9796798 GTTGAACAAGTTCTTCTCATTTTGAA--CTTCTTCCTTTTCAGATGAA-TTTTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAATTCTTCTTCCTCTTCAGAT-AAGTTCTTCTCATTATGAA
* * *
9796860 CTCTTCTGGAAATGTTGATCCATCGATCAAGCTAAA
65 CTATACTGGAAATATTGATCCATCGATCAAGCTAAA
* *
9796896 GTTGAACAAGTTCTTCTCATCATGAACTTCTTCTTCCTCTTCAGATAAGTTCTTCTTATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAA-TTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAA
9796961 CTATACATGGAAATATTGATCCATCGATCAAGCTAAA
65 CTATAC-TGGAAATATTGATCCATCGATCAAGCTAAA
* * *
9796998 GTTGAATAAGTTCTTCTCATTATGAATTTCTTTTTCCTCTTCAGATGAGTTCTTCTCATTATGAA
1 GTTGAACAAGTTCTTCTCATTATGAA-TTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAA
9797063 TTCTACCTTG
Statistics
Matches: 148, Mismatches: 14, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
98 24 0.16
100 2 0.01
101 34 0.23
102 88 0.59
ACGTcount: A:0.27, C:0.19, G:0.12, T:0.41
Consensus pattern (100 bp):
GTTGAACAAGTTCTTCTCATTATGAATTCTTCTTCCTCTTCAGATAAGTTCTTCTCATTATGAAC
TATACTGGAAATATTGATCCATCGATCAAGCTAAA
Found at i:9797321 original size:113 final size:113
Alignment explanation
Indices: 9797111--9798120 Score: 1629
Period size: 113 Copynumber: 9.0 Consensus size: 113
9797101 TGAAATGGAG
*
9797111 TCAAGAAAAAGGTTGAACAAGTTCTTCTC-TTCATGAACTTCTTCTTCC-TCTTCAGATGAGTTC
1 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATT-ATGAACTTCTTCTTCCTTCTTCAGATGAGTTC
*
9797174 TTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATAAAT
65 TTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAAT
*
9797223 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTTAGATGAGTTCT
1 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
9797288 TCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAAT
66 TCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAAT
* * *
9797336 TCAAGCAAAAGGTTGAACAAGTTATTCTCATTACGAACTTCTTCTTCCTTCTTCAGATGAGTTAT
1 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
9797401 TCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAAT
66 TCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAAT
*
9797449 TCGAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
1 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
* * * *
9797514 TCTCATTATGAACTCTACCTGGCAATGCTAATCCATCGGGTAATGAAT
66 TCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAAT
* * * *
9797562 TCGAGTAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCT
1 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
* *
9797627 TCTCATTATGAACTCTACCTGGAAATGCTGATCCATCGAGTGATGAAT
66 TCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAAT
* * ** * * *
9797675 TCGAGAAAAATATTGAACAAGTTTTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTAT
1 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
* *
9797740 TCTCATTATGAACTCTACTTGGCAATGCTGATCCATCGAGTGATGAAT
66 TCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAAT
* * *
9797788 T-AGAGTAAAAGGTTGAACAAGTTTTTCTCATTATGAACTTCTTCTTCATTCTTCAGATGAGTTC
1 TCA-AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTC
9797852 TTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAAT
65 TTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAAT
* *
9797901 TCGAA-CAAAATGTTGAACAAGTTCTTCTCATTATGAAATTCTTCTTCCTTCTTCAGATGAGTTC
1 TC-AAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTC
9797965 TTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAAT
65 TTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAAT
* * *
9798014 TCGAGCAAAATGTTGAACAAGTTCTTCTCATTATGAA---CTTCTTCCATCTTCAGATGAGTTCT
1 TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
*
9798076 TCTCATTATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATG
66 TCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATG
9798121 GATTTGAATC
Statistics
Matches: 844, Mismatches: 48, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
110 68 0.08
112 45 0.05
113 729 0.86
114 1 0.00
115 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (113 bp):
TCAAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCT
TCTCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAAT
Found at i:9797391 original size:226 final size:226
Alignment explanation
Indices: 9796790--9798120 Score: 1733
Period size: 226 Copynumber: 6.0 Consensus size: 226
9796780 GATCAAATCT
* * *
9796790 AGCAAAAGGTTGAACAAGTTCTTCTCATTTTGAA---CTTCTTCCTT-TTCAGATGAATTTTTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * *
9796851 CATTATGAACTCT-TCTGGAAATGTTGATCCATC-------G-A-TCAAGCTAAA-GTTGAACAA
66 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCAAGCAAAAGGTTGAACAA
* * * * *
9796905 GTTCTTCTCATCATGAACTTCTTCTTCC-TCTTCAGATAAGTTCTTCTTATTATGAACTATACAT
131 GTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
* *
9796969 GGAAATATTGATCCATC-------G-A-TCA
196 GGCAATGTTGATCCATCGAGTGATGAATTCA
* * * *
9796991 AGCTAAA-GTTGAATAAGTTCTTCTCATTATGAATTTCTTTTTCC-TCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * ** ** * * *
9797054 CATTATGAATTCTACCTTGAAAAGGCTATAATGCTCT-ATCTCTTTCTTGAAATGGAGTCAAGAA
66 CATTATGAACTCTACC-T-----GGC---AATG-T-TGATC-C-ATCGAGTGATGAATTCAAGCA
9797118 AAAGGTTGAACAAGTTCTTCTC-TTCATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTCAT
118 AAAGGTTGAACAAGTTCTTCTCATT-ATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
9797181 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATAAATTCA
182 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCA
*
9797226 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTTAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
9797291 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCAAGCAAAAGGTTGAACAA
66 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCAAGCAAAAGGTTGAACAA
* * *
9797356 GTTATTCTCATTACGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCTACCT
131 GTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
*
9797421 GGCAATGTTGATCCATCGAGTGATGAATTCG
196 GGCAATGTTGATCCATCGAGTGATGAATTCA
9797452 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * * * * * *
9797517 CATTATGAACTCTACCTGGCAATGCTAATCCATCGGGTAATGAATTCGAGTAAAAAGTTGAACAA
66 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCAAGCAAAAGGTTGAACAA
*
9797582 GTTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
131 GTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
* * *
9797647 GGAAATGCTGATCCATCGAGTGATGAATTCG
196 GGCAATGTTGATCCATCGAGTGATGAATTCA
* ** * * *
9797678 AGAAAAATATTGAACAAGTTTTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTATTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * *
9797743 CATTATGAACTCTACTTGGCAATGCTGATCCATCGAGTGATGAATT-AGAGTAAAAGGTTGAACA
66 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCA-AGCAAAAGGTTGAACA
* *
9797807 AGTTTTTCTCATTATGAACTTCTTCTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC
130 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC
9797872 TGGCAATGTTGATCCATCGAGTGATGAATTCGA
195 TGGCAATGTTGATCCATCGAGTGATGAATTC-A
* *
9797905 A-CAAAATGTTGAACAAGTTCTTCTCATTATGAAATTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* *
9797969 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAATGTTGAACAA
66 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCAAGCAAAAGGTTGAACAA
*
9798034 GTTCTTCTCATTATGAA---CTTCTTCCATCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
131 GTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
*
9798096 GGCAATGCTGATCCATCGAGTGATG
196 GGCAATGTTGATCCATCGAGTGATG
9798121 GATTTGAATC
Statistics
Matches: 999, Mismatches: 85, Indels: 70
0.87 0.07 0.06
Matches are distributed among these distances:
200 24 0.02
201 6 0.01
202 1 0.00
203 34 0.03
204 1 0.00
205 1 0.00
210 2 0.00
213 4 0.00
214 4 0.00
215 2 0.00
216 2 0.00
223 68 0.07
224 1 0.00
225 58 0.06
226 701 0.70
227 5 0.01
228 4 0.00
231 3 0.00
234 1 0.00
235 9 0.01
236 35 0.04
237 33 0.03
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (226 bp):
AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCAAGCAAAAGGTTGAACAA
GTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
GGCAATGTTGATCCATCGAGTGATGAATTCA
Found at i:9797550 original size:339 final size:338
Alignment explanation
Indices: 9796790--9798120 Score: 1772
Period size: 339 Copynumber: 4.0 Consensus size: 338
9796780 GATCAAATCT
* * *
9796790 AGCAAAAGGTTGAACAAGTTCTTCTCATTTTGAA---CTTCTTCCTT-TTCAGATGAATTTTTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * *
9796851 CATTATGAACTCT-TCTGGAAATGTTGATCCATC-------G-A-TCAAGCTAAAGTTGAACAAG
66 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCAAGCAAAAGTTGAACAAG
* * * * *
9796906 TTCTTCTCATCATGAACTTCTTCTTCC-TCTTCAGATAAGTTCTTCTTATTATGAACTATACATG
131 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
* * *
9796970 GAAATATTGATCCATC-------G-A-TCAAGCTAAA-GTTGAATAAGTTCTTCTCATTATGAAT
196 GAAATGTTGATCCATCGAGTGATGAATTCAAGCAAAATGTTGAACAAGTTCTTCTCATTATGAAT
* * *
9797025 TTCTTTTTCC-TCTTCAGATGAGTTCTTCTCATTATGAATTCTACCTTGAAAAGGCTATAATGCT
261 TTCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCTACC-T-----GGC---AATGCT
* * ** ** * * *
9797089 CTATCTCTTTCTTGAAATGGAGTCA
317 -GATC-C-ATCGAGTGATGAATTCG
*
9797114 AGAAAAAGGTTGAACAAGTTCTTCTC-TTCATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTC
1 AGCAAAAGGTTGAACAAGTTCTTCTCATT-ATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTC
*
9797177 TCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATAAATTCAAGCAAAAGGTTGAACA
65 TCATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCAAGCAAAA-GTTGAACA
*
9797242 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTTAGATGAGTTCTTCTCATTATGAACTCTACC
129 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC
* * * *
9797307 TGGCAATGTTGATCCATCGAGTGATGAATTCAAGCAAAAGGTTGAACAAGTTATTCTCATTACGA
194 TGGAAATGTTGATCCATCGAGTGATGAATTCAAGCAAAATGTTGAACAAGTTCTTCTCATTATGA
* *
9797372 ACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCTACCTGGCAATGTTGATCCAT
259 ATTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCTACCTGGCAATGCTGATCCAT
9797437 CGAGTGATGAATTCG
324 CGAGTGATGAATTCG
9797452 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * * * * *
9797517 CATTATGAACTCTACCTGGCAATGCTAATCCATCGGGTAATGAATTCGAGTAAAAAGTTGAACAA
66 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCAAG-CAAAAGTTGAACAA
*
9797582 GTTCTTCTCATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
130 GTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCT
* * * * *
9797647 GGAAATGCTGATCCATCGAGTGATGAATTCGAGAAAAATATTGAACAAGTTTTTCTCATTATGAA
195 GGAAATGTTGATCCATCGAGTGATGAATTCAAGCAAAATGTTGAACAAGTTCTTCTCATTATGAA
*
9797712 TTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCTACTTGGCAATGCTGATCCATC
260 TTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCTACCTGGCAATGCTGATCCATC
*
9797777 GAGTGATGAATTAG
325 GAGTGATGAATTCG
* * *
9797791 AGTAAAAGGTTGAACAAGTTTTTCTCATTATGAACTTCTTCTTCATTCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
9797856 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAA-CAAAATGTTGAACA
66 CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTC-AAGCAAAA-GTTGAACA
*
9797920 AGTTCTTCTCATTATGAAATTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC
129 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC
* *
9797985 TGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAATGTTGAACAAGTTCTTCTCATTATGA
194 TGGAAATGTTGATCCATCGAGTGATGAATTCAAGCAAAATGTTGAACAAGTTCTTCTCATTATGA
* *
9798050 A---CTTCTTCCATCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTGATCCAT
259 ATTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCTACCTGGCAATGCTGATCCAT
9798112 CGAGTGATG
324 CGAGTGATG
9798121 GATTTGAATC
Statistics
Matches: 899, Mismatches: 75, Indels: 54
0.87 0.07 0.05
Matches are distributed among these distances:
323 2 0.00
324 29 0.03
326 1 0.00
327 36 0.04
328 18 0.02
336 68 0.08
337 9 0.01
338 90 0.10
339 553 0.62
340 8 0.01
341 5 0.01
344 3 0.00
346 1 0.00
347 1 0.00
348 9 0.01
349 33 0.04
350 33 0.04
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (338 bp):
AGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
CATTATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCAAGCAAAAGTTGAACAAG
TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTG
GAAATGTTGATCCATCGAGTGATGAATTCAAGCAAAATGTTGAACAAGTTCTTCTCATTATGAAT
TTCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCTACCTGGCAATGCTGATCCATCG
AGTGATGAATTCG
Found at i:9803051 original size:72 final size:72
Alignment explanation
Indices: 9802934--9803069 Score: 213
Period size: 72 Copynumber: 1.9 Consensus size: 72
9802924 GTATAATAGG
* * *
9802934 TTAGCTGAAACTTATCCATAAAGTCGGGTTGATTAACCAATTGCTTTAGGGGGATAACTCAAGCA
1 TTAGCTGAAACTTATCCATAAAGTAGGGCTGATTAACCAATTGCTTTAAGGGGATAACTCAAGCA
9802999 TAACAGA
66 TAACAGA
9803006 TTAGCTGAATA-TTATCCATAAAGCTAGGGCT-ATTAACCAATTGCTTTAAGGGGATAACTCAAG
1 TTAGCTGAA-ACTTATCCATAAAG-TAGGGCTGATTAACCAATTGCTTTAAGGGGATAACTCAAG
9803069 C
64 C
9803070 TTTATTGTAT
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
72 53 0.90
73 6 0.10
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.29
Consensus pattern (72 bp):
TTAGCTGAAACTTATCCATAAAGTAGGGCTGATTAACCAATTGCTTTAAGGGGATAACTCAAGCA
TAACAGA
Found at i:9806161 original size:35 final size:35
Alignment explanation
Indices: 9806098--9806165 Score: 111
Period size: 35 Copynumber: 1.9 Consensus size: 35
9806088 CTTTACTGTA
*
9806098 GAATCTTTTGGTATCAATCTAACAGGATCTTTGTG
1 GAATCTTTTGGTATCAATATAACAGGATCTTTGTG
9806133 GAATACTTTTGGTAT-AATATAACAGGATCTTTG
1 GAAT-CTTTTGGTATCAATATAACAGGATCTTTG
9806166 AGTGCATAGC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 21 0.68
36 10 0.32
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (35 bp):
GAATCTTTTGGTATCAATATAACAGGATCTTTGTG
Found at i:9809193 original size:3 final size:3
Alignment explanation
Indices: 9809187--9809250 Score: 69
Period size: 3 Copynumber: 22.0 Consensus size: 3
9809177 ATTTATTATT
* * *
9809187 TAA TAA TAA TAA T-A TAA -CA TAA TAA TAT TAA TAT TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
9809233 AAA TAA TAA TAC TAA TAA
1 TAA TAA TAA TAA TAA TAA
9809251 AAATGATACA
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
2 3 0.06
3 46 0.94
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:9812812 original size:6 final size:6
Alignment explanation
Indices: 9809277--9812804 Score: 4320
Period size: 6 Copynumber: 608.2 Consensus size: 6
9809267 TAGTGGCTAC
* *
9809277 ACATAT ACATAT ACATAT GCATAT ACATAT ACATAT GCATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9809325 GCATAT ACATAT ACATAT ACATAT --ATAT ACATA- ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* *
9809370 GCATAT ACATAT ACATAT ACAAAT ACATAT AC--AT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9809416 ACATAT ACATAT ACATAT ACATAT ACATAC ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9809464 AC--AT ACATAT ACATAT ACATAT ACATAT ACATAT ACA-AT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9809509 ACATA- ACATA- ACA-AT ACATAG ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9809554 ACATAT AC-TAT ACATAT ACATAT ACATAT ACATAT ACATAT AC--AT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9809599 ACATAT ACAGAT ACATAT ACATAT ACATAT ACATAT ACATAT --A-AT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9809644 ACATAT ACATA- ACATAT ACATAT ACATAT ACATAT ACCTAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9809691 AC--AT ACATAT ACATAT ACATAT ACATAT AC--AT A-ATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9809734 ACATAT ACATAT AC-TAT ACATAT ACATAT --ATAT ACATAT CACA-AT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT -ACATAT
*
9809779 ACATAT ACATATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACCTAT
1 ACATAT AC--ATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9809829 ACA-AT ACATAT ACATAT ACATAT ACATAT AC--AT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9809874 ACATAT AC--AT ACATAT ACATAT AC--AT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9809918 AC--AT ACATAT ACATAT AC-TAT AC--AT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * *
9809961 ACATAT GCATAT GCAT-T GCATAT GCATAT ACATA- AC--AT ACATCT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * *
9810005 ACATAT GC--AT A-ATAT ACATAT ACATAT --ATAT GCATAT GCATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * ** *
9810048 ACATAT ACATAT GCATAT CCATAT CCATAT ACATAT GCATAT GGAAAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * **
9810096 GCATAT --ATAT GCATAT -CATAT GGATAT AC--AT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9810139 AC--AG ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9810185 AC--AT -CATAT ACATAT -C-TAT ACATAT ACATAT ACATAT ACATAAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACAT-AT
9810229 ACATAT ACATAT ACATAT ACATAT --ATAT -CATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9810274 ACATACAT ACATAT AC--AT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACAT--AT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9810322 CCATAT ACATAT ACATAT AC--AT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9810368 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT -C-TAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * *
9810414 GCAATAT GCATA- GCATAT GCATAT GCATAT ACATAT ACATAT ACATAT
1 AC-ATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* *
9810462 ACATAT ACATAT GCATAT GCATAT AC--AT ACATAT ACATCAT ATGCATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACAT-AT A--CATAT
* * * *
9810511 ACATAT ACATAT GCATAT CCATAT CCATAT AC--AT GCATAT GGA-ATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT --ACATAT
* * * *
9810558 GCATAT ACATAT GCATAT GGA-ATAT GCATAT ACATAT GCATAT GGA-ATAT
1 ACATAT ACATAT ACATAT --ACATAT ACATAT ACATAT ACATAT --ACATAT
* * ** * * *
9810608 GCATAT ACATAT GCATAT ACATAT GGATAT GCATAT ATATAT GC--AT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* *
9810654 GCATAT ACATAT ACATAT GCATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * *
9810702 ACATGCAT ATACAT ACATAT GCATAT ACATAT ACATAT GC--AT AC-TAT
1 ACAT--AT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * *
9810749 ACATAAT GCAGCATAT ACATAT ACATAT GCATAT ATACAT ATATAT ACATAT
1 ACAT-AT --A-CATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9810801 AC--CT ACATAT AC--AT ACATAT ACAT-T ACATAT ACATATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT AC--ATAT ACATAT
*
9810846 ACATAT ACATAT ACATAT ACATAT ACATAG ACATAT AC--AT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9810892 ACATAT AC--AT ACATAT ACATAT ACATAT AC--AT ACATA- ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9810935 ACATAT ACATAT ACATAT ACATAT ACATAT AC--AT ACATAT AC--AT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9810979 ACATAT ACATAT ACATAT ACATAT ACATAT AGATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9811027 ACATAT ACATAT AC--AT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9811073 ACATAT AC--CT ACATAT AC--AT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * *
9811117 GCATAT GCATAT GCATAT ACATAT ACATAT ACATAT ACATAT GCATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * *
9811165 GCATAT ACATAT ACATAT ACATAT GCATAT GCATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * * *
9811213 GCATAT CCATAT CCATAT ACATAT GCATAT GGA-ATAT GCATAT AC--AT
1 ACATAT ACATAT ACATAT ACATAT ACATAT --ACATAT ACATAT ACATAT
*
9811260 -CATAT ACATAT ATATCAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACAT-AT ACATAT ACATAT ACATAT ACATAT ACATAT
9811308 ACATAT --ATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9811354 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9811402 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT AC--AT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9811448 ACATAT ACATAT ACATAT AC-TAT ACATA- ACATAT ACATAT -CATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* *
9811493 GCATAT --ATAT ACATAT ACACATAT ACATAT AGC--AT GCATAT ATCATAT
1 ACATAT ACATAT ACATAT --ACATAT ACATAT A-CATAT ACATAT A-CATAT
** * * * *
9811541 ACATAT GTATAT GCATAT ACATAT -CATAT GCATAT CCATAT CCATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * * **
9811588 ACATAT GCATAT A-ATAT GCATAT GCATAT GGA-AT AGCATAT --ATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT A-CATAT ACATAT
* * * * *
9811633 GCATAT ACATAT -GATAT GCATAT ACATAT GCATAT GCATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* *
9811680 ACATAT GCATAT ACATAT ACATAT ACATAT ACATAT GCATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* *
9811728 ACATAT GCATAT ACATAT ACATAT GCA-AT ACATAT AC--AT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9811773 GCATAT ACATAT ACACATAT ACATAT ATGCATAGAT ACATAT ACATAT
1 ACATAT ACATAT --ACATAT ACATAT A--CAT--AT ACATAT ACATAT
* *
9811821 ACATAT ACATAT ACATAT CCATAT -CATAT ACATAT ACATAT GCAT-T
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* * *
9811867 CCATAT -CATAT AC--AT ACATAT GCATAT GCATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* *
9811912 ACATAT ACATAT ACATAT ACATAT ACAT-T ATATACG ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATA-T ACATAT ACATAT
* *
9811960 ACATAT ACATACAT ACATAT ACCATAT --ATAC ATATAT ACATAT ACATAT
1 ACATAT ACAT--AT ACATAT A-CATAT ACATAT ACATAT ACATAT ACATAT
*
9812009 AC--AT ACATAT AC--AT ACATAT ACCTAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9812053 ACATAT CCATAT ACATCAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACAT-AT ACATAT ACATAT ACATAT ACATAT ACATAT
9812102 AC--AT ACATAT ACATAT ACATAT ACATAT ACATAT ACATA- ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9812147 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9812195 ACATAT ACATAT ACATAT AC-TAT ACATAT ACATAT ACATAT ACATCT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9812242 ACATAT ACATAT ACATAT ACATA- ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9812289 ACATAT ACATAT ACATACAT ACATAT ACATAT ACATAT ACATAT AC--AT
1 ACATAT ACATAT ACAT--AT ACATAT ACATAT ACATAT ACATAT ACATAT
9812337 ACATAT AC--AT ACATAT ACATAT ACATAT -CATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9812382 ACATAT ACATAT ACATAT ACATAT --AGAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9812428 ACATAT ACATAT ACATAT ACAGAT ACATAT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
* *
9812476 ACATAT CCATATAT ACATAT ACAGAT ACATAT ACATACAT ACATAT ACATAT
1 ACATAT --ACATAT ACATAT ACATAT ACATAT ACAT--AT ACATAT ACATAT
9812528 ACATAT ACATAT ACATAT ACATAT AC--AT ACATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9812574 ACATAT ACATAT A-AT-T ACATAT AC--AT ACATAT ACATAT AC-TAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9812617 ACATAG ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT -CATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9812664 ACATAT ACATAT ACATAT AC--AT ACATAT -CATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
*
9812709 AC--AT A-ATAT ACATAT ACATAT ACATAC A-ATAT ACATAT ACATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT
9812753 AC--AT ACATAT ACATAT ACATAT --ATAT ACATAT ACATAT ACTATAT
1 ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT ACATAT AC-ATAT
9812798 ACATAT A
1 ACATAT A
9812805 TACATATATA
Statistics
Matches: 3136, Mismatches: 169, Indels: 434
0.84 0.05 0.12
Matches are distributed among these distances:
3 5 0.00
4 218 0.07
5 199 0.06
6 2565 0.82
7 71 0.02
8 66 0.02
9 6 0.00
10 6 0.00
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (6 bp):
ACATAT
Found at i:9814032 original size:3 final size:3
Alignment explanation
Indices: 9814024--9814094 Score: 54
Period size: 3 Copynumber: 24.0 Consensus size: 3
9814014 AATTATTTAT
* * * * * * *
9814024 TAA TAA TAA CAA TAA CAA AAA TAA AAA TAA -AA TAA TTA TAA TTA TTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
9814071 TTA TAA TAA TAA TAA AAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA
9814095 AACCAGGATA
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
2 2 0.04
3 52 0.96
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:9814256 original size:20 final size:20
Alignment explanation
Indices: 9814231--9814298 Score: 61
Period size: 20 Copynumber: 3.5 Consensus size: 20
9814221 ATGTTGAATA
9814231 AGTTCTTCTTCTTTGGGACT
1 AGTTCTTCTTCTTTGGGACT
*
9814251 AGTTCTTC-TCATTAT-GAACT
1 AGTTCTTCTTC-TT-TGGGACT
* * *
9814271 -CTTCTTCTGCTTTGGGATT
1 AGTTCTTCTTCTTTGGGACT
9814290 AGTTCTTCT
1 AGTTCTTCT
9814299 CATTATGAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
18 1 0.03
19 13 0.35
20 22 0.59
21 1 0.03
ACGTcount: A:0.13, C:0.21, G:0.16, T:0.50
Consensus pattern (20 bp):
AGTTCTTCTTCTTTGGGACT
Found at i:9814285 original size:39 final size:39
Alignment explanation
Indices: 9814233--9814312 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
9814223 GTTGAATAAG
*
9814233 TTCTTCTTCTTTGGGACTAGTTCTTCTCATTATGAACTC
1 TTCTTCTGCTTTGGGACTAGTTCTTCTCATTATGAACTC
*
9814272 TTCTTCTGCTTTGGGATTAGTTCTTCTCATTATGAACTC
1 TTCTTCTGCTTTGGGACTAGTTCTTCTCATTATGAACTC
9814311 TT
1 TT
9814313 GGCGGGAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.15, C:0.21, G:0.14, T:0.50
Consensus pattern (39 bp):
TTCTTCTGCTTTGGGACTAGTTCTTCTCATTATGAACTC
Found at i:9814639 original size:39 final size:39
Alignment explanation
Indices: 9814556--9814641 Score: 97
Period size: 39 Copynumber: 2.2 Consensus size: 39
9814546 ATTGGGCCTG
*
9814556 TATATAAATAAAATATTTATTAATAATAAACATAACAAA
1 TATAAAAATAAAATATTTATTAATAATAAACATAACAAA
* *
9814595 AATAAAAATAAAATATTATAATTTTATAATAAA-AT-A-AAA
1 TATAAAAATAAAATATT-T-A-TTAATAATAAACATAACAAA
9814634 TATAAAAA
1 TATAAAAA
9814642 CAGAAAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
39 25 0.62
40 2 0.05
41 3 0.08
42 10 0.25
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (39 bp):
TATAAAAATAAAATATTTATTAATAATAAACATAACAAA
Found at i:9814788 original size:36 final size:35
Alignment explanation
Indices: 9814739--9814810 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 35
9814729 GTGAATAAGT
9814739 TCTTCTTCTTTGGGACTAGTTCTT-CATTATGAAC
1 TCTTCTTCTTTGGGACTAGTTCTTCCATTATGAAC
*
9814773 TCTTCTTTGCTTTGGGATTAGTTCTTCCATTATGAAC
1 TCTTC-TT-CTTTGGGACTAGTTCTTCCATTATGAAC
9814810 T
1 T
9814811 TGGCGGGAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
34 5 0.15
35 2 0.06
36 16 0.47
37 11 0.32
ACGTcount: A:0.17, C:0.19, G:0.15, T:0.49
Consensus pattern (35 bp):
TCTTCTTCTTTGGGACTAGTTCTTCCATTATGAAC
Found at i:9816837 original size:3 final size:3
Alignment explanation
Indices: 9816831--9816890 Score: 81
Period size: 3 Copynumber: 21.0 Consensus size: 3
9816821 ATTTATTATT
*
9816831 TAA TAA TAA TAA TAA T-A TAA -CA TAA TAA TAA TAA TAA TAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
9816876 TAA TAA TAC TAA TAA
1 TAA TAA TAA TAA TAA
9816891 AAATGATATA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
2 5 0.10
3 45 0.90
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:9816901 original size:23 final size:23
Alignment explanation
Indices: 9816831--9816894 Score: 85
Period size: 23 Copynumber: 2.8 Consensus size: 23
9816821 ATTTATTATT
* *
9816831 TAATAATAATAAT-AATATAACA
1 TAATAATAATAATAAAAATAAAA
*
9816853 TAATAATAATAATAATAATAAAA
1 TAATAATAATAATAAAAATAAAA
*
9816876 TAATAATACTAATAAAAAT
1 TAATAATAATAATAAAAAT
9816895 GATATAAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
22 13 0.36
23 23 0.64
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (23 bp):
TAATAATAATAATAAAAATAAAA
Found at i:9817353 original size:102 final size:100
Alignment explanation
Indices: 9817158--9817435 Score: 364
Period size: 102 Copynumber: 2.8 Consensus size: 100
9817148 CTAACAAAAG
* * * *
9817158 GTTAAACAAGTTCTTTTCATTTTGAACTTC-TTCCTTTTCAGATGAA-TTTTTCTCATTATGAAC
1 GTTAAACAAGTTCTTCTCATTATGAACTTCTTTCCTCTTCAGAT-AAGTTCTTCTCATTATGAAC
**
9817221 TCT-TTTGGAAATGTTGATCCATCGATCAAGCTAAA
65 TCTACCTGGAAATGTTGATCCATCGATCAAGCTAAA
* * *
9817256 GTTAAACAAGTTCTTCTCATCATGAACTTCTTCATCCTCTTCAGATAAGTTCTTCTTATAATGAA
1 GTTAAACAAGTTCTTCTCATTATGAACTTCTT--TCCTCTTCAGATAAGTTCTTCTCATTATGAA
*
9817321 CTATACCTGGAAATGTTGATCCATCGATCAAGCTAAA
64 CTCTACCTGGAAATGTTGATCCATCGATCAAGCTAAA
* * *
9817358 GTTGAATAAGTTCTTCTCATTATGAACTTCTTTTTCCTCTTCAGATGAGTTCTTCTCATTATGAA
1 GTTAAACAAGTTCTTCTCATTATGAACTTC--TTTCCTCTTCAGATAAGTTCTTCTCATTATGAA
*
9817423 CTCTACCTTGAAA
64 CTCTACCTGGAAA
9817436 AGGCTCTGAT
Statistics
Matches: 155, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
98 27 0.17
99 1 0.01
100 2 0.01
101 27 0.17
102 96 0.62
104 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.12, T:0.40
Consensus pattern (100 bp):
GTTAAACAAGTTCTTCTCATTATGAACTTCTTTCCTCTTCAGATAAGTTCTTCTCATTATGAACT
CTACCTGGAAATGTTGATCCATCGATCAAGCTAAA
Found at i:9817685 original size:113 final size:113
Alignment explanation
Indices: 9817477--9818592 Score: 1900
Period size: 113 Copynumber: 9.9 Consensus size: 113
9817467 GGAGTCAAGA
*
9817477 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTTAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
9817541 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
*
9817589 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
9817654 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAGC
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
* *
9817702 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTTTTCCTTCTTCAGATAAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* *
9817767 TATGAACTCTACCT-GCAATATTGATCCATCGAGTGATGAATTCAAGC
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
* * *
9817814 AAAAGGTTGAACAAGTTATTCTCATTACGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
9817879 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
9817927 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
9817992 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGT
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
*
9818040 AAAAAGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
9818105 TATGAACTCTACCTGGAAATGCTGATCCATCGAGTGATGAATTCGAGA
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
** * * * *
9818153 AAAATATTGAACAAGTTTTTCTCACTATGAATTTCTTATTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
9818218 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTAGAGT
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
* *
9818266 AAAAGGTTGAACAAGTTTTTCTCATTATGAACTTCTTCTTCATTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
9818331 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAAC
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
* *
9818379 AAAATGTTGAACAAGTTCTTCTCATTATGAAATTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
9818444 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAGC
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
* *
9818492 AAAATGTTGAACAAGTTCTTCTCATTATGAA---CTTCTTCCATCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
9818554 TATGAACTCTACCTAGCAATGTTGATCCATCGAGTGATG
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATG
9818593 GATTTGAATC
Statistics
Matches: 952, Mismatches: 50, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
110 67 0.07
112 146 0.15
113 739 0.78
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.37
Consensus pattern (113 bp):
AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGC
Found at i:9817761 original size:226 final size:226
Alignment explanation
Indices: 9817260--9818592 Score: 1944
Period size: 226 Copynumber: 5.9 Consensus size: 226
9817250 GCTAAAGTTA
* * * * * *
9817260 AACAAGTTCTTCTCATCATGAACTTCTTCATCC-TCTTCAGATAAGTTCTTCTTATAATGAACTA
1 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
* * * *
9817324 TACCTGGAAATGTTGATCCATC-------G-A-TCAAGCTAAA-GTTGAATAAGTTCTTCTCATT
66 TACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATT
* ** *
9817379 ATGAACTTCTTTTTCC-TCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTTGAAAAGGCTCT
131 ATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC-TGGCAATG--CT
*** * * * *
9817443 GATGCTCTATCTCTTTCTTGAAATGGAGTCAAGAAAAAGGTTG
193 GAT-C-C-A--TC--GAGTG--ATGAATTCGAGCAAAAGGTTG
*
9817486 AACAAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTTAGATGAGTTCTTCTCATTATGAACTC
1 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
9817550 TACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATT
66 TACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATT
*
9817615 ATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTGAT
131 ATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTGAT
9817680 CCATCGAGTGATGAATTCGAGCAAAAGGTTG
196 CCATCGAGTGATGAATTCGAGCAAAAGGTTG
* *
9817711 AACAAGTTCTTCTCATTATGAACTTCTTTTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTC
1 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
* * *
9817776 TACCT-GCAATATTGATCCATCGAGTGATGAATTCAAGCAAAAGGTTGAACAAGTTATTCTCATT
66 TACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATT
* * *
9817840 ACGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCATTATGAACTCTACCTGGCAATGTTGAT
131 ATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTGAT
9817905 CCATCGAGTGATGAATTCGAGCAAAAGGTTG
196 CCATCGAGTGATGAATTCGAGCAAAAGGTTG
9817936 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
1 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
* *
9818001 TACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGTAAAAAGTTGAACAAGTTCTTCTCATT
66 TACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATT
*
9818066 ATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAATGCTGAT
131 ATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTGAT
* **
9818131 CCATCGAGTGATGAATTCGAGAAAAATATTG
196 CCATCGAGTGATGAATTCGAGCAAAAGGTTG
* * * *
9818162 AACAAGTTTTTCTCACTATGAATTTCTTATTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
1 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
* * * *
9818227 TACCTGGCAATGCTGATCCATCGAGTGATGAATTAGAGTAAAAGGTTGAACAAGTTTTTCTCATT
66 TACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATT
* *
9818292 ATGAACTTCTTCTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTGAT
131 ATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTGAT
* *
9818357 CCATCGAGTGATGAATTCGAACAAAATGTTG
196 CCATCGAGTGATGAATTCGAGCAAAAGGTTG
*
9818388 AACAAGTTCTTCTCATTATGAAATTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
1 AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
* *
9818453 TACCTGGCAATGCTGATCCATCGAGTGATGAATTCGAGCAAAATGTTGAACAAGTTCTTCTCATT
66 TACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATT
* * *
9818518 ATGAA---CTTCTTCCATCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTAGCAATGTTGAT
131 ATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTGAT
9818580 CCATCGAGTGATG
196 CCATCGAGTGATG
9818593 GATTTGAATC
Statistics
Matches: 1022, Mismatches: 72, Indels: 29
0.91 0.06 0.03
Matches are distributed among these distances:
223 67 0.07
225 265 0.26
226 594 0.58
227 2 0.00
229 2 0.00
231 1 0.00
232 1 0.00
233 2 0.00
234 6 0.01
235 8 0.01
236 40 0.04
237 34 0.03
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (226 bp):
AACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTC
TACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATT
ATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTGAT
CCATCGAGTGATGAATTCGAGCAAAAGGTTG
Found at i:9818316 original size:339 final size:339
Alignment explanation
Indices: 9817153--9818592 Score: 1974
Period size: 339 Copynumber: 4.3 Consensus size: 339
9817143 CAAATCTAAC
* * * * *
9817153 AAAAGGTTAAACAAGTTCTTTTCATTTTGAA---CTTCTTCCTT-TTCAGATGAATTTTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
** * * * *
9817214 TATGAACTCT-TTTGGAAATGTTGATCCATC-------G-A-TCAAGCTAAA-GTTAAACAAGTT
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTT
* * * * * *
9817268 CTTCTCATCATGAACTTCTTCATCC-TCTTCAGATAAGTTCTTCTTATAATGAACTATACCTGGA
131 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTACCTGGC
* * *
9817332 AATGTTGATCCATC-------G-A-TCAAGC-TAAAGTTGAATAAGTTCTTCTCATTATGAACTT
196 AATGTTGATCCATCGAGTGATGAATTCGAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTT
* * *
9817387 CTTTTTCC-TCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTTGAAAAGGCTCTGATGCTCT
261 CTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACC-TGGAAATG--CTGAT-C-C-
*** * *
9817451 ATCTCTTTCTTGAAATGGAGTCAAGA
320 A--TC--GAGTG--ATGAATTCAAGA
*
9817477 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTTAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
9817541 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTT
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTT
9817606 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTACCTGGC
131 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTACCTGGC
* *
9817671 AATGCTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTT
196 AATGTTGATCCATCGAGTGATGAATTCGAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTT
* * *
9817736 CTTTTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTACCTGCAATAT--TGATCCATCGA
261 CTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAA-ATGCTGATCCATCGA
*
9817799 GTGATGAATTCAAGC
325 GTGATGAATTCAAGA
* * *
9817814 AAAAGGTTGAACAAGTTATTCTCATTACGAACTTCTTCTTCCTTCTTCAGATGAGTTATTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
9817879 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTT
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTT
*
9817944 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGC
131 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTACCTGGC
*
9818009 AATGTTGATCCATCGAGTGATGAATTCGAGTAAAAAGTTGAACAAGTTCTTCTCATTATGAACTT
196 AATGTTGATCCATCGAGTGATGAATTCGAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTT
9818074 CTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAATGCTGATCCATCGAG
261 CTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAATGCTGATCCATCGAG
*
9818139 TGATGAATTCGAGA
326 TGATGAATTCAAGA
** * * * *
9818153 AAAATATTGAACAAGTTTTTCTCACTATGAATTTCTTATTCCTTCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
* * *
9818218 TATGAACTCTACCTGGCAATGCTGATCCATCGAGTGATGAATTAGAGTAAAAGGTTGAACAAGTT
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTT
* * *
9818283 TTTCTCATTATGAACTTCTTCTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGC
131 CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTACCTGGC
* * *
9818348 AATGTTGATCCATCGAGTGATGAATTCGAACAAAATGTTGAACAAGTTCTTCTCATTATGAAATT
196 AATGTTGATCCATCGAGTGATGAATTCGAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTT
*
9818413 CTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATGCTGATCCATCGAG
261 CTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAATGCTGATCCATCGAG
* *
9818478 TGATGAATTCGAGC
326 TGATGAATTCAAGA
* *
9818492 AAAATGTTGAACAAGTTCTTCTCATTATGAA---CTTCTTCCATCTTCAGATGAGTTCTTCTCAT
1 AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
*
9818554 TATGAACTCTACCTAGCAATGTTGATCCATCGAGTGATG
66 TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATG
9818593 GATTTGAATC
Statistics
Matches: 1014, Mismatches: 71, Indels: 50
0.89 0.06 0.04
Matches are distributed among these distances:
324 28 0.03
326 1 0.00
327 35 0.03
328 17 0.02
335 1 0.00
336 67 0.07
337 59 0.06
338 291 0.29
339 422 0.42
341 2 0.00
343 1 0.00
344 1 0.00
345 1 0.00
346 5 0.00
347 1 0.00
348 5 0.00
349 42 0.04
350 35 0.03
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (339 bp):
AAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCAT
TATGAACTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTCGAGCAAAAGGTTGAACAAGTT
CTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTCTACCTGGC
AATGTTGATCCATCGAGTGATGAATTCGAGCAAAAAGTTGAACAAGTTCTTCTCATTATGAACTT
CTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGAAATGCTGATCCATCGAG
TGATGAATTCAAGA
Found at i:9826705 original size:36 final size:36
Alignment explanation
Indices: 9826658--9826727 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
9826648 TCTTACTGTA
*
9826658 GAATACTTTTGGTATCAATCTAACAGGATCTTTGTG
1 GAATACTTTTGGTATCAATATAACAGGATCTTTGTG
*
9826694 GAATACTTTTGGTATTAATATAACAGGATCTTTG
1 GAATACTTTTGGTATCAATATAACAGGATCTTTG
9826728 AGTGCATAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (36 bp):
GAATACTTTTGGTATCAATATAACAGGATCTTTGTG
Found at i:9829802 original size:3 final size:3
Alignment explanation
Indices: 9829796--9829864 Score: 88
Period size: 3 Copynumber: 23.7 Consensus size: 3
9829786 ATTTATTATT
* * *
9829796 TAA TAA TAA TAA T-A TAA -CA TAA TAA TAA TAA TAT TAA TAA TAA TAT
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
9829842 TAA TAA TAA TAA AAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TA
9829865 CTAACAAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
2 3 0.05
3 53 0.95
ACGTcount: A:0.64, C:0.01, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:9830148 original size:6 final size:6
Alignment explanation
Indices: 9829904--9830147 Score: 461
Period size: 6 Copynumber: 40.7 Consensus size: 6
9829894 CTACACATAT
*
9829904 ACATAC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC
1 ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC
9829952 ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC
1 ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC
9830000 ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC
1 ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC
9830048 ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC
1 ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC
* *
9830096 ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATAC ACATAC
1 ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC ACATGC
9830144 ACAT
1 ACAT
9830148 ATACATATAC
Statistics
Matches: 236, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
6 236 1.00
ACGTcount: A:0.35, C:0.33, G:0.15, T:0.17
Consensus pattern (6 bp):
ACATGC
Found at i:9831177 original size:3 final size:3
Alignment explanation
Indices: 9831171--9831251 Score: 162
Period size: 3 Copynumber: 27.0 Consensus size: 3
9831161 AATTATTACT
9831171 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9831219 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9831252 ACGGGACAAA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 78 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:9832352 original size:15 final size:16
Alignment explanation
Indices: 9832296--9832356 Score: 97
Period size: 16 Copynumber: 3.9 Consensus size: 16
9832286 ATACAAAGCC
*
9832296 TTTGAATCATTAAGCA
1 TTTGAATCATTCAGCA
9832312 TTTGAATCATTCAGCA
1 TTTGAATCATTCAGCA
*
9832328 TTTGAATCATTCAGCG
1 TTTGAATCATTCAGCA
9832344 TTT-AATCATTCAG
1 TTTGAATCATTCAG
9832357 TGCTTAATCA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
15 10 0.23
16 33 0.77
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.39
Consensus pattern (16 bp):
TTTGAATCATTCAGCA
Found at i:9832363 original size:15 final size:15
Alignment explanation
Indices: 9832316--9832369 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
9832306 TAAGCATTTG
**
9832316 AATCATTCAGCATTT
1 AATCATTCAGCGCTT
*
9832331 GAATCATTCAGCGTTT
1 -AATCATTCAGCGCTT
*
9832347 AATCATTCAGTGCTT
1 AATCATTCAGCGCTT
9832362 AATCATTC
1 AATCATTC
9832370 TGAAGTAAAC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
15 21 0.60
16 14 0.40
ACGTcount: A:0.30, C:0.20, G:0.11, T:0.39
Consensus pattern (15 bp):
AATCATTCAGCGCTT
Found at i:9833875 original size:2 final size:2
Alignment explanation
Indices: 9833865--9833901 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
9833855 GATAAAAAAA
9833865 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9833902 TTCATATGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9836164 original size:18 final size:19
Alignment explanation
Indices: 9836141--9836182 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
9836131 ATATCTTAGC
9836141 TTAAATTTACATATTAA-A
1 TTAAATTTACATATTAACA
*
9836159 TTAAATTTACATCTTAACA
1 TTAAATTTACATATTAACA
9836178 TTAAA
1 TTAAA
9836183 AATATATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.43
Consensus pattern (19 bp):
TTAAATTTACATATTAACA
Found at i:9836302 original size:30 final size:29
Alignment explanation
Indices: 9836169--9836518 Score: 153
Period size: 30 Copynumber: 11.6 Consensus size: 29
9836159 TTAAATTTAC
*
9836169 ATCTTAACATTAAAAATATATTTTATTTTT
1 ATCTTAA-ATTAAAAATATATTTTATTCTT
* * * *
9836199 ATATTAAATTATTAAATATAATTTAATCTT
1 ATCTTAAATTA-AAAATATATTTTATTCTT
* ** *
9836229 GTCTTAACCTAAAAATCA-ATTTTATTCCT
1 ATCTTAAATTAAAAAT-ATATTTTATTCTT
* * * *
9836258 ATTTTAACTTAAAAACATATTTTAGTCTTT
1 ATCTTAAATTAAAAATATATTTTATTC-TT
9836288 ATCTTAAATTAAAAATTATATTTTATTCTT
1 ATCTTAAATTAAAAA-TATATTTTATTCTT
9836318 ATCTTAACTTATTACATAAAT-TATTAAATATATTCTATTCTT
1 ATCTTAA---ATTA-A-AAATATATT---T-TATT-----CTT
* * * *
9836360 ACCTTAAATTATTAAATATAATTAATTCTT
1 ATCTTAAATTA-AAAATATATTTTATTCTT
* * * *
9836390 ATTTTAACTTAAAACATGTCTTTTATTCTT
1 ATCTTAAATTAAAA-ATATATTTTATTCTT
* *
9836420 ATCTTAACTTAAATATATATTTTTATT-TT
1 ATCTTAAATTAAAAATATA-TTTTATTCTT
* *
9836449 ATC-T-AA--AAATATATATTTTTTATCTT
1 ATCTTAAATTAAAAATATATTTTAT-TCTT
* * * *
9836475 AAC-TACA--AAAAATATATTATATTTTT
1 ATCTTAAATTAAAAATATATTTTATTCTT
*
9836501 ATCTTAAATTTAAAATAT
1 ATCTTAAATTAAAAATAT
9836519 TATCATACTA
Statistics
Matches: 241, Mismatches: 51, Indels: 57
0.69 0.15 0.16
Matches are distributed among these distances:
24 5 0.02
25 10 0.04
26 10 0.04
27 17 0.07
28 2 0.01
29 53 0.22
30 92 0.38
31 10 0.04
33 8 0.03
34 2 0.01
35 6 0.02
36 2 0.01
37 4 0.02
38 4 0.02
39 7 0.03
42 9 0.04
ACGTcount: A:0.40, C:0.09, G:0.01, T:0.50
Consensus pattern (29 bp):
ATCTTAAATTAAAAATATATTTTATTCTT
Found at i:9836464 original size:25 final size:26
Alignment explanation
Indices: 9836413--9836492 Score: 85
Period size: 26 Copynumber: 3.2 Consensus size: 26
9836403 ACATGTCTTT
* *
9836413 TATTCTTATCTTAACT--TAAATATA
1 TATTTTTATCTTAACTACAAAATATA
* *
9836437 TATTTTTATTTTATCTA-AAAATATA
1 TATTTTTATCTTAACTACAAAATATA
*
9836462 TATTTTTTATCTTAACTACAAAAAATA
1 TA-TTTTTATCTTAACTACAAAATATA
9836489 TATT
1 TATT
9836493 ATATTTTTAT
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
24 13 0.28
25 9 0.20
26 15 0.33
27 9 0.20
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (26 bp):
TATTTTTATCTTAACTACAAAATATA
Found at i:9836578 original size:29 final size:29
Alignment explanation
Indices: 9836540--9836669 Score: 158
Period size: 29 Copynumber: 4.5 Consensus size: 29
9836530 AATATAAATA
*
9836540 TTTAAGTTAAGATAAGAATAAATTATATT
1 TTTAAGTTAAGATAAGAATAAAATATATT
*
9836569 TTTAATTTAAGATAAGAAT-AAA-ATATT
1 TTTAAGTTAAGATAAGAATAAAATATATT
* *
9836596 TTTAATTTAAAATAAGAATAAAATATATT
1 TTTAAGTTAAGATAAGAATAAAATATATT
* *
9836625 TTTAGGTTACA-AAAAGAATAAAATATATT
1 TTTAAGTTA-AGATAAGAATAAAATATATT
*
9836654 TAATAAGTTAAGATAA
1 T-TTAAGTTAAGATAA
9836670 AAACATGTTT
Statistics
Matches: 87, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
27 23 0.26
28 5 0.06
29 49 0.56
30 10 0.11
ACGTcount: A:0.52, C:0.01, G:0.08, T:0.38
Consensus pattern (29 bp):
TTTAAGTTAAGATAAGAATAAAATATATT
Found at i:9836614 original size:56 final size:56
Alignment explanation
Indices: 9836537--9836657 Score: 163
Period size: 56 Copynumber: 2.2 Consensus size: 56
9836527 TAAAATATAA
* * * * *
9836537 ATATTTAAGTTAAGATAAGAATAAATTATATTTTTAATTTA-AGATAAGAATAAAAT
1 ATATTTAATTTAAAATAAGAATAAAATATATTTTTAAGTTACA-AAAAGAATAAAAT
* *
9836593 ATTTTTAATTTAAAATAAGAATAAAATATATTTTTAGGTTACAAAAAGAATAAAAT
1 ATATTTAATTTAAAATAAGAATAAAATATATTTTTAAGTTACAAAAAGAATAAAAT
9836649 ATATTTAAT
1 ATATTTAAT
9836658 AAGTTAAGAT
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
56 55 0.98
57 1 0.02
ACGTcount: A:0.52, C:0.01, G:0.07, T:0.40
Consensus pattern (56 bp):
ATATTTAATTTAAAATAAGAATAAAATATATTTTTAAGTTACAAAAAGAATAAAAT
Found at i:9836625 original size:22 final size:24
Alignment explanation
Indices: 9836570--9836621 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 24
9836560 AATTATATTT
*
9836570 TTAATTTAAGATAAGAATAAAATA
1 TTAATTTAAAATAAGAATAAAATA
9836594 TTTTTAATTTAAAATAAGAATAAAATA
1 ---TTAATTTAAAATAAGAATAAAATA
9836621 T
1 T
9836622 ATTTTTAGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
27 23 0.96
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (24 bp):
TTAATTTAAAATAAGAATAAAATA
Found at i:9837236 original size:23 final size:23
Alignment explanation
Indices: 9837187--9837236 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
9837177 TACCCTTTAT
** *
9837187 TTTAAATAATTTATCTTTAAATT
1 TTTAAATAATTTATAATTAAATG
* *
9837210 TTTAACTAATTTATAATTATATG
1 TTTAAATAATTTATAATTAAATG
9837233 TTTA
1 TTTA
9837237 GCCGTTTAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (23 bp):
TTTAAATAATTTATAATTAAATG
Found at i:9837573 original size:2 final size:2
Alignment explanation
Indices: 9837566--9837656 Score: 54
Period size: 2 Copynumber: 48.5 Consensus size: 2
9837556 TTCTAATACA
* * * *
9837566 AT AT AT AT AT AT AT AT AT AT AT AT ACT AT TT CT AT A- AA AT AA
1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
* *
9837608 AT A- AT AT A- AT -T AT AT -T A- AT AT CAT AA AT AA AT AT -T A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT
9837644 AT AT AT AT AT AT A
1 AT AT AT AT AT AT A
9837657 ATTTATGATA
Statistics
Matches: 69, Mismatches: 10, Indels: 20
0.70 0.10 0.20
Matches are distributed among these distances:
1 8 0.12
2 57 0.83
3 4 0.06
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:9838350 original size:18 final size:18
Alignment explanation
Indices: 9838327--9838362 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
9838317 GTTTAACGTT
*
9838327 ATATCGGTGTTAGTTTTC
1 ATATCGGCGTTAGTTTTC
9838345 ATATCGGCGTTAGTTTTC
1 ATATCGGCGTTAGTTTTC
9838363 TCAAATGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.14, G:0.22, T:0.47
Consensus pattern (18 bp):
ATATCGGCGTTAGTTTTC
Found at i:9842349 original size:16 final size:18
Alignment explanation
Indices: 9842317--9842350 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
9842307 ATGAGAGAGG
9842317 GAAAAATATATAATAATA
1 GAAAAATATATAATAATA
9842335 GAAAAAT-TA-AATAATA
1 GAAAAATATATAATAATA
9842351 ATTATAGTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 2 0.12
18 7 0.44
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (18 bp):
GAAAAATATATAATAATA
Found at i:9842494 original size:76 final size:78
Alignment explanation
Indices: 9842413--9842568 Score: 280
Period size: 79 Copynumber: 2.0 Consensus size: 78
9842403 TATATATATA
9842413 ACGTTTAAACAAGATATTAG-TAT-AAAAAAAATACAAAATGAAATGAAAATAAACGAAAAGAAG
1 ACGTTTAAACAAGATATTAGATATAAAAAAAAATACAAAATGAAATGAAAATAAACGAAAAGAAG
9842476 TACGAACGATAAT
66 TACGAACGATAAT
*
9842489 ACGTTTAAACAAGGTATTAGTATATAAAAAAAAATACAAAATGAAATGAAAATAAACGAAAAGAA
1 ACGTTTAAACAAGATATTAG-ATATAAAAAAAAATACAAAATGAAATGAAAATAAACGAAAAGAA
9842554 GTACGAACGATAAT
65 GTACGAACGATAAT
9842568 A
1 A
9842569 TATCTACGTG
Statistics
Matches: 76, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
76 19 0.25
78 3 0.04
79 54 0.71
ACGTcount: A:0.59, C:0.08, G:0.13, T:0.20
Consensus pattern (78 bp):
ACGTTTAAACAAGATATTAGATATAAAAAAAAATACAAAATGAAATGAAAATAAACGAAAAGAAG
TACGAACGATAAT
Found at i:9844552 original size:106 final size:105
Alignment explanation
Indices: 9844424--9844884 Score: 701
Period size: 106 Copynumber: 4.4 Consensus size: 105
9844414 GTATTGTTCA
* * * * * * *
9844424 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGTTCTGGAACTGGGAAATTGTTTGTTGACAG
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTATTTGTTGACAA
* * * * *
9844489 TCAGCCGCCCCTTCGTCGTGAAGTTGAGCTT-GTGCTGTCTT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTAGT-C-GTCTG
9844530 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTATTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTATTTGTTGACAA
9844595 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTCGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTA-GTCGTCTG
9844636 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTATTTGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTATTTGTTGACAA
*
9844701 CCAGCGGTCCCTTCGCCGTGAAGTTGAACTTACGTCGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTA-GTCGTCTG
* * *
9844742 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGAGAAA-TGTTCGTTGACAA
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTATTTGTTGACAA
*
9844806 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTACGTTGTCTG
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTA-GTCGTCTG
*
9844847 GAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTC
1 GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTC
9844885 TGGGTAAAAC
Statistics
Matches: 334, Mismatches: 19, Indels: 5
0.93 0.05 0.01
Matches are distributed among these distances:
105 87 0.26
106 244 0.73
107 1 0.00
108 2 0.01
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (105 bp):
GAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCCGAAATTGGGAAATTATTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTAGTCGTCTG
Found at i:9845087 original size:1 final size:1
Alignment explanation
Indices: 9845081--9845107 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
9845071 TTGATGATGA
9845081 TTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
9845108 GAAGATGCTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:9845697 original size:1 final size:1
Alignment explanation
Indices: 9845691--9845724 Score: 68
Period size: 1 Copynumber: 34.0 Consensus size: 1
9845681 ACCCCAAACG
9845691 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
9845725 CAACTTAGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:9856513 original size:22 final size:21
Alignment explanation
Indices: 9856479--9856522 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
9856469 GAGAGAGAGG
*
9856479 GAAAAATATATAATAATAATA
1 GAAAAATAAATAATAATAATA
*
9856500 GAAAAATTAAATAATAATTATA
1 GAAAAA-TAAATAATAATAATA
9856522 G
1 G
9856523 TAATACAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.64, C:0.00, G:0.07, T:0.30
Consensus pattern (21 bp):
GAAAAATAAATAATAATAATA
Found at i:9856514 original size:19 final size:21
Alignment explanation
Indices: 9856479--9856517 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
9856469 GAGAGAGAGG
9856479 GAAAAATATATAATAATAATA
1 GAAAAATATATAATAATAATA
9856500 GAAAAAT-TA-AATAATAAT
1 GAAAAATATATAATAATAAT
9856518 TATAGTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
20 2 0.11
21 7 0.39
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (21 bp):
GAAAAATATATAATAATAATA
Found at i:9856660 original size:76 final size:78
Alignment explanation
Indices: 9856573--9856734 Score: 283
Period size: 79 Copynumber: 2.1 Consensus size: 78
9856563 ATATATATAT
9856573 ATAATAACGTTTAAACAAGATATTAG-TAT-AAAAAAAATACAAAATGAAATGAAAATAAACGAA
1 ATAAT-ACGTTTAAACAAGATATTAGATATAAAAAAAAATACAAAATGAAATGAAAATAAACGAA
9856636 AAGAAGTACGAACG
65 AAGAAGTACGAACG
*
9856650 ATAATACGTTTAAACAAGGTATTAGTATATAAAAAAAAATACAAAATGAAATGAAAATAAACGAA
1 ATAATACGTTTAAACAAGATATTAG-ATATAAAAAAAAATACAAAATGAAATGAAAATAAACGAA
9856715 AAGAAGTACGAACG
65 AAGAAGTACGAACG
9856729 ATAATA
1 ATAATA
9856735 TATCTACGTG
Statistics
Matches: 81, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
76 19 0.23
77 5 0.06
78 3 0.04
79 54 0.67
ACGTcount: A:0.59, C:0.07, G:0.13, T:0.20
Consensus pattern (78 bp):
ATAATACGTTTAAACAAGATATTAGATATAAAAAAAAATACAAAATGAAATGAAAATAAACGAAA
AGAAGTACGAACG
Found at i:9865915 original size:7 final size:7
Alignment explanation
Indices: 9865897--9865933 Score: 58
Period size: 7 Copynumber: 5.3 Consensus size: 7
9865887 AAGTGTTAGT
9865897 TTAATT-
1 TTAATTG
9865903 TTAATTG
1 TTAATTG
9865910 TTAATTG
1 TTAATTG
9865917 TTAATTG
1 TTAATTG
9865924 TGTAATTG
1 T-TAATTG
9865932 TT
1 TT
9865934 TGTTTTTGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 6 0.21
7 16 0.55
8 7 0.24
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.59
Consensus pattern (7 bp):
TTAATTG
Found at i:9868292 original size:2 final size:2
Alignment explanation
Indices: 9868285--9868319 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
9868275 CTAAAGCAAA
9868285 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9868320 GAAGTATTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:9869280 original size:39 final size:39
Alignment explanation
Indices: 9869199--9869296 Score: 128
Period size: 39 Copynumber: 2.5 Consensus size: 39
9869189 GCTAGTTCCT
9869199 CGTCTAATTCAATGCATTTAATCCTACTGTTAAATGCAGCA
1 CGTCTAATTCAATGCA-TT-ATCCTACTGTTAAATGCAGCA
* **
9869240 CGTCTAATTCAATGCATTATCTTGTTGTTAAATGCAGCA
1 CGTCTAATTCAATGCATTATCCTACTGTTAAATGCAGCA
*
9869279 CGTCT-A-TCCATGCATTAT
1 CGTCTAATTCAATGCATTAT
9869297 AGCTGTTAAC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
37 11 0.21
38 1 0.02
39 23 0.43
40 2 0.04
41 16 0.30
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.37
Consensus pattern (39 bp):
CGTCTAATTCAATGCATTATCCTACTGTTAAATGCAGCA
Found at i:9873644 original size:3 final size:3
Alignment explanation
Indices: 9873636--9873660 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
9873626 TTAAATATAG
9873636 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
9873661 GATTAAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:9873971 original size:31 final size:31
Alignment explanation
Indices: 9873933--9873991 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
9873923 CTTTTAAAAC
*
9873933 TTACAATACAGTCCCCTAACATTTAGTCAAT
1 TTACAATACAGTCCCCCAACATTTAGTCAAT
** *
9873964 TTACAATATGGTCCCCCGACATTTAGTC
1 TTACAATACAGTCCCCCAACATTTAGTC
9873992 TACTTGTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.10, T:0.32
Consensus pattern (31 bp):
TTACAATACAGTCCCCCAACATTTAGTCAAT
Found at i:9875132 original size:32 final size:32
Alignment explanation
Indices: 9875096--9875182 Score: 115
Period size: 32 Copynumber: 2.7 Consensus size: 32
9875086 GACCCATAAC
*
9875096 ACACTGTTGTGTATTATCTGAA-AGCGACATC-G
1 ACACTGTTGTGCATTATCTGAATA-CGACA-CAG
* *
9875128 ACACTATTGTGCATTATTTGAATACGACACAG
1 ACACTGTTGTGCATTATCTGAATACGACACAG
9875160 ACACTGTTGTGCATTATCTGAAT
1 ACACTGTTGTGCATTATCTGAAT
9875183 GCTACACTCT
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
31 1 0.02
32 46 0.96
33 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (32 bp):
ACACTGTTGTGCATTATCTGAATACGACACAG
Found at i:9877849 original size:46 final size:46
Alignment explanation
Indices: 9877773--9877895 Score: 133
Period size: 46 Copynumber: 2.7 Consensus size: 46
9877763 GTTATTATTG
*** * **
9877773 TTATTT-AGTATTGAACTTTACCCTCTGATAAGGATGCATTAGCCTA
1 TTATTTGA-TATTGAACTTTATTATCCGATAAGGATGCACCAGCCTA
*
9877819 TTATTTGATATTGAA-TGTTATTATCCGATAAGGATGCACCAGTCTA
1 TTATTTGATATTGAACT-TTATTATCCGATAAGGATGCACCAGCCTA
* *
9877865 TTTTTTGGTATTGAACTTTATTATCCGATAA
1 TTATTTGATATTGAACTTTATTATCCGATAA
9877896 TAATGCACTA
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
45 1 0.02
46 62 0.95
47 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.42
Consensus pattern (46 bp):
TTATTTGATATTGAACTTTATTATCCGATAAGGATGCACCAGCCTA
Found at i:9878995 original size:2 final size:2
Alignment explanation
Indices: 9878988--9879077 Score: 180
Period size: 2 Copynumber: 45.0 Consensus size: 2
9878978 TAGAAACTCC
9878988 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9879030 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9879072 AT AT AT
1 AT AT AT
9879078 CCATTTTTCT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 88 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9880437 original size:20 final size:20
Alignment explanation
Indices: 9880406--9880453 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
9880396 GAAACCCATT
9880406 ACCAGT-CACCTGTCCCCTC
1 ACCAGTACACCTGTCCCCTC
9880425 ACCAGTACACCTGTCCCCTC
1 ACCAGTACACCTGTCCCCTC
9880445 ACCAGTACA
1 ACCAGTACA
9880454 AGACCATCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 6 0.21
20 22 0.79
ACGTcount: A:0.23, C:0.48, G:0.10, T:0.19
Consensus pattern (20 bp):
ACCAGTACACCTGTCCCCTC
Found at i:9882191 original size:18 final size:18
Alignment explanation
Indices: 9882168--9882216 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
9882158 CCTTTATATC
*
9882168 TAGAATAGGCACAAGTCT
1 TAGAATAGTCACAAGTCT
9882186 TAGAATAGTCACAAGTCT
1 TAGAATAGTCACAAGTCT
9882204 TAGAATAGTCACA
1 TAGAATAGTCACA
9882217 CTTGTATATC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.24
Consensus pattern (18 bp):
TAGAATAGTCACAAGTCT
Found at i:9882658 original size:17 final size:17
Alignment explanation
Indices: 9882632--9882665 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9882622 GTATCAATTC
*
9882632 TGACATCTCTATGTCAA
1 TGACAACTCTATGTCAA
*
9882649 TGACAACTCTTTGTCAA
1 TGACAACTCTATGTCAA
9882666 CAATCAATAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (17 bp):
TGACAACTCTATGTCAA
Found at i:9888624 original size:35 final size:37
Alignment explanation
Indices: 9888551--9888630 Score: 119
Period size: 35 Copynumber: 2.2 Consensus size: 37
9888541 ATACTATTTC
*
9888551 CATCACCATAATCCATCTTCCATTATCACGCCTATAT
1 CATCACCATAATCCATCTACCATTATCACGCCTATAT
* *
9888588 CATCACCATAGTCCATC-ACCA-TATCACGCCTGTAT
1 CATCACCATAATCCATCTACCATTATCACGCCTATAT
9888623 CATCACCA
1 CATCACCA
9888631 AATTCTCAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
35 21 0.52
36 3 0.08
37 16 0.40
ACGTcount: A:0.30, C:0.38, G:0.05, T:0.28
Consensus pattern (37 bp):
CATCACCATAATCCATCTACCATTATCACGCCTATAT
Found at i:9889034 original size:26 final size:23
Alignment explanation
Indices: 9889005--9889052 Score: 60
Period size: 26 Copynumber: 2.0 Consensus size: 23
9888995 AAAGTGCTAC
9889005 AACAAAAAAGCAACAAGAAAGAAGAA
1 AACAAAAAAG-AA-AAGAAA-AAGAA
*
9889031 AACAAAAGAGAAAAGAAAAAGA
1 AACAAAAAAGAAAAGAAAAAGA
9889053 CTCCTACATC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 6 0.29
25 2 0.10
26 9 0.43
ACGTcount: A:0.75, C:0.08, G:0.17, T:0.00
Consensus pattern (23 bp):
AACAAAAAAGAAAAGAAAAAGAA
Found at i:9889108 original size:14 final size:15
Alignment explanation
Indices: 9889074--9889120 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
9889064 AATTTGGAGT
9889074 GCAAAAGAAAGAAAA
1 GCAAAAGAAAGAAAA
*
9889089 GAAAAAG-AAGAAAA
1 GCAAAAGAAAGAAAA
*
9889103 TCAAAAGCAAAAGAAAA
1 GCAAAAG--AAAGAAAA
9889120 G
1 G
9889121 TGAAGCAAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
14 12 0.48
15 6 0.24
17 7 0.28
ACGTcount: A:0.72, C:0.06, G:0.19, T:0.02
Consensus pattern (15 bp):
GCAAAAGAAAGAAAA
Found at i:9893531 original size:35 final size:37
Alignment explanation
Indices: 9893460--9893539 Score: 110
Period size: 35 Copynumber: 2.2 Consensus size: 37
9893450 ATACTATTTC
* *
9893460 CATCAGCATAATCCATCTTCCATTATCACGCATATAT
1 CATCACCATAATCCATCTACCATTATCACGCATATAT
* *
9893497 CATCACCATAGTCCATC-ACCA-TATCACGCCTATAT
1 CATCACCATAATCCATCTACCATTATCACGCATATAT
9893532 CATCACCA
1 CATCACCA
9893540 AATTCTCAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
35 21 0.54
36 3 0.08
37 15 0.38
ACGTcount: A:0.33, C:0.35, G:0.05, T:0.28
Consensus pattern (37 bp):
CATCACCATAATCCATCTACCATTATCACGCATATAT
Found at i:9895542 original size:15 final size:15
Alignment explanation
Indices: 9895516--9895562 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
9895506 AAATCATATG
*
9895516 TATATCAAATATACA
1 TATATTAAATATACA
* *
9895531 TATCTTAAATATAGA
1 TATATTAAATATACA
9895546 TATATTATAATA-ACA
1 TATATTA-AATATACA
9895561 TA
1 TA
9895563 CAACAAATTG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 22 0.85
16 4 0.15
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.38
Consensus pattern (15 bp):
TATATTAAATATACA
Found at i:9903100 original size:20 final size:20
Alignment explanation
Indices: 9903027--9903099 Score: 69
Period size: 20 Copynumber: 3.7 Consensus size: 20
9903017 TTTTCCAAAA
* *
9903027 AGTTTCGATACCTT-CCAAG
1 AGTTTCGAAACTTTCCCAAG
* *
9903046 AGTTTCGAAACTATCTCAAG
1 AGTTTCGAAACTTTCCCAAG
*
9903066 AGTTTCAAAACTTTACCCAA-
1 AGTTTCGAAACTTT-CCCAAG
*
9903086 AGTTTCGATACTTT
1 AGTTTCGAAACTTT
9903100 ATGTCCAACG
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
19 11 0.26
20 28 0.65
21 4 0.09
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (20 bp):
AGTTTCGAAACTTTCCCAAG
Found at i:9914523 original size:17 final size:18
Alignment explanation
Indices: 9914503--9914541 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
9914493 ATATTATATC
*
9914503 AATTT-AGTCATAATTTT
1 AATTTAAGTCAAAATTTT
*
9914520 AATTTAATTCAAAATTTT
1 AATTTAAGTCAAAATTTT
9914538 AATT
1 AATT
9914542 CTCCAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.51
Consensus pattern (18 bp):
AATTTAAGTCAAAATTTT
Found at i:9915392 original size:90 final size:89
Alignment explanation
Indices: 9915271--9915494 Score: 261
Period size: 89 Copynumber: 2.5 Consensus size: 89
9915261 TAAATTATAT
* * * * * *
9915271 ATTAGTTTTAAACGATAAAAGAATAAAAAACATTGTAAGAAAGAAAAAAAATATGTGATTTAAAT
1 ATTATTTTTAAATGATAAATGAATAACAAACATTGTAAGAAAGAAAAAAAATATATAATTTAAA-
* * *
9915336 TTATT-TTAAAATTAATTATTTTACA
65 -CATTCTTAAAAATAATTATTTCACA
** * * *
9915361 ATTATTTTTAAATGATATTTGAATGACAAACATTTTAAGAAAGAAAAATAATATATAATTTAAAC
1 ATTATTTTTAAATGATAAATGAATAACAAACATTGTAAGAAAGAAAAAAAATATATAATTTAAAC
* *
9915426 ATTCTTAAAAATGATTATTTCATA
66 ATTCTTAAAAATAATTATTTCACA
* *
9915450 ATTATTTTTAAATGATAAATGAATAATAAATATTGTAAGAAAGAA
1 ATTATTTTTAAATGATAAATGAATAACAAACATTGTAAGAAAGAA
9915495 TATATATATA
Statistics
Matches: 111, Mismatches: 22, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
88 3 0.03
89 55 0.50
90 53 0.48
ACGTcount: A:0.51, C:0.04, G:0.08, T:0.37
Consensus pattern (89 bp):
ATTATTTTTAAATGATAAATGAATAACAAACATTGTAAGAAAGAAAAAAAATATATAATTTAAAC
ATTCTTAAAAATAATTATTTCACA
Found at i:9915466 original size:89 final size:89
Alignment explanation
Indices: 9915271--9915508 Score: 262
Period size: 90 Copynumber: 2.6 Consensus size: 89
9915261 TAAATTATAT
* * * * * * *
9915271 ATTAGTTTTAAACGATAAAAGAATAAAAAACATTGTAAGAAAGAAAAAAAATATGTGATTTAAAT
1 ATTATTTTTAAATGATAAATGAATAACAAACATTGTAAGAAAGAAAAATAATATATAATTTAAA-
* * *
9915336 TTATTTTAAAATTAATTATTTTACA
65 TCATTTTAAAAATAATTATTTCACA
** * *
9915361 ATTATTTTTAAATGATATTTGAATGACAAACATTTTAAGAAAGAAAAATAATATATAATTTAAA-
1 ATTATTTTTAAATGATAAATGAATAACAAACATTGTAAGAAAGAAAAATAATATATAATTTAAAT
* *
9915425 CATTCTTAAAAATGATTATTTCATA
66 CATT-TTAAAAATAATTATTTCACA
* * *
9915450 ATTATTTTTAAATGATAAATGAATAATAAATATTGTAAGAAAGAATATATATATATATA
1 ATTATTTTTAAATGATAAATGAATAACAAACATTGTAAGAAAGAA-AAATA-ATATATA
9915509 TATATATATA
Statistics
Matches: 122, Mismatches: 23, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
88 3 0.02
89 55 0.45
90 57 0.47
91 7 0.06
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (89 bp):
ATTATTTTTAAATGATAAATGAATAACAAACATTGTAAGAAAGAAAAATAATATATAATTTAAAT
CATTTTAAAAATAATTATTTCACA
Done.