Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007999.1 Hibiscus syriacus cultivar Beakdansim tig00110450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11700749
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 43 of 50
Found at i:10160601 original size:103 final size:103
Alignment explanation
Indices: 10160422--10160647 Score: 373
Period size: 103 Copynumber: 2.2 Consensus size: 103
10160412 CCATATAATA
* *
10160422 ATGTCCAT-AAGGACCACATATCATTCCTTAAGAATCATATACATATACTAAGGACCAAATATGT
1 ATGTCC-TGAAGGACCACATATCATTCCTTAAAAATCATATACATATACCAAGGACCAAATATGT
10160486 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATAT
65 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATAT
* * *
10160525 ATGTCCTGAAGGACCACATATCATTCCTTAAAAATCATATACATATGCCAAGGATCAATTATGTG
1 ATGTCCTGAAGGACCACATATCATTCCTTAAAAATCATATACATATACCAAGGACCAAATATGTG
10160590 TCTCACCAGACTTCACACATGTTCCAAAGAATACATAT
66 TCTCACCAGACTTCACACATGTTCCAAAGAATACATAT
* *
10160628 ATGTCCCGAAAGACCACATA
1 ATGTCCTGAAGGACCACATA
10160648 GACCCTCTAC
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
102 1 0.01
103 114 0.99
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.27
Consensus pattern (103 bp):
ATGTCCTGAAGGACCACATATCATTCCTTAAAAATCATATACATATACCAAGGACCAAATATGTG
TCTCACCAGACTTCACACATGTTCCAAAGAATACATAT
Found at i:10161205 original size:64 final size:64
Alignment explanation
Indices: 10161107--10161227 Score: 192
Period size: 64 Copynumber: 1.9 Consensus size: 64
10161097 TAATGGAGGT
10161107 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATATTTGTATTTAACGGGG
1 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATATTT-TATTTAACGGGG
* *
10161172 ATGCATCGATGCACT-C-CTTATGCATCGATGCATAAATCCTATTCGATGTTTTATTT
1 ATGCATCGATGCACTACAC-CATGCATCGATGCATAAATCCTATTCGATATTTTATTT
10161228 TTAAATTAAT
Statistics
Matches: 53, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
63 6 0.11
64 32 0.60
65 15 0.28
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (64 bp):
ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATATTTTATTTAACGGGG
Found at i:10161240 original size:64 final size:63
Alignment explanation
Indices: 10161107--10161267 Score: 182
Period size: 64 Copynumber: 2.5 Consensus size: 63
10161097 TAATGGAGGT
* * *
10161107 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATATTTGTATTTAACGGGG
1 ATGCATCGATGCACT-C-CTATGCATCGATGCATAAATCCTATTCGATATTTGTATTTAACAGGA
* **
10161172 ATGCATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCGATGTTT-TATTTTTAA-ATT
1 ATGCATCGATGCACTCC-TATGCATCGATGCATAAATCCTATTCGATATTTGTA--TTTAACAGG
10161235 A
63 A
* *
10161236 ATGCATCGATGCACTGCATGTGCATCGATGCA
1 ATGCATCGATGCACT-CCTATGCATCGATGCA
10161268 CCTTAAATAA
Statistics
Matches: 84, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
63 3 0.04
64 60 0.71
65 21 0.25
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (63 bp):
ATGCATCGATGCACTCCTATGCATCGATGCATAAATCCTATTCGATATTTGTATTTAACAGGA
Found at i:10162924 original size:6 final size:6
Alignment explanation
Indices: 10162909--10162944 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
10162899 TTAAGGGTGA
* *
10162909 TTAGGT TTAGGG TTAGGG TTAGGG TTAGAG TTAGGG
1 TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG
10162945 ATTTGGTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.36
Consensus pattern (6 bp):
TTAGGG
Found at i:10163911 original size:20 final size:20
Alignment explanation
Indices: 10163888--10163927 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
10163878 TATAGTACAT
* *
10163888 GTATGTAAAAACTATGTATA
1 GTATATAAAAACTATATATA
*
10163908 GTATATATAAACTATATATA
1 GTATATAAAAACTATATATA
10163928 TAACCTATAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (20 bp):
GTATATAAAAACTATATATA
Found at i:10163927 original size:13 final size:13
Alignment explanation
Indices: 10163909--10163942 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
10163899 CTATGTATAG
10163909 TATATATAAACTA
1 TATATATAAACTA
*
10163922 TATATATAACCTA
1 TATATATAAACTA
10163935 TAGTATAT
1 TA-TATAT
10163943 GTATATATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.47, C:0.09, G:0.03, T:0.41
Consensus pattern (13 bp):
TATATATAAACTA
Found at i:10163937 original size:55 final size:57
Alignment explanation
Indices: 10163860--10163983 Score: 155
Period size: 55 Copynumber: 2.2 Consensus size: 57
10163850 TGTATACATG
* * * *
10163860 TAAACAATATATGTAACTTATAGTACATGTATGTA-A-AAACTATGTATA-GTATATA
1 TAAACTATATATATAACCTATAGTACATGTATATATACAAACTATGTATACGT-TATA
* * *
10163915 TAAACTATATATATAACCTATAGTATATGTATATATACAATCTATTTATACGTTATA
1 TAAACTATATATATAACCTATAGTACATGTATATATACAAACTATGTATACGTTATA
10163972 TAAACTATATAT
1 TAAACTATATAT
10163984 GTAAGATATA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
55 30 0.51
56 1 0.02
57 26 0.44
58 2 0.03
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (57 bp):
TAAACTATATATATAACCTATAGTACATGTATATATACAAACTATGTATACGTTATA
Found at i:10163994 original size:57 final size:55
Alignment explanation
Indices: 10163860--10163995 Score: 157
Period size: 57 Copynumber: 2.4 Consensus size: 55
10163850 TGTATACATG
* * *
10163860 TAAACAATATATGTAACTTATAGTACATGTATGTAAAAACTATGTATAGTATATA
1 TAAACTATATATGTAACATATAGTACATGTATATAAAAACTATGTATAGTATATA
* * * * *
10163915 TAAACTATATATATAACCTATAGTATATGTATATATACAATCTATTTATACGT-TATA
1 TAAACTATATATGTAACATATAGTACATGTATATA-A-AAACTATGTATA-GTATATA
*
10163972 TAAACTATATATGTAAGATATAGT
1 TAAACTATATATGTAACATATAGT
10163996 TCATAATCAA
Statistics
Matches: 68, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
55 30 0.44
56 1 0.01
57 35 0.51
58 2 0.03
ACGTcount: A:0.44, C:0.08, G:0.09, T:0.39
Consensus pattern (55 bp):
TAAACTATATATGTAACATATAGTACATGTATATAAAAACTATGTATAGTATATA
Found at i:10164043 original size:14 final size:14
Alignment explanation
Indices: 10164021--10164064 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
10164011 TATATTAGTG
10164021 TACTATATAATTTA
1 TACTATATAATTTA
* **
10164035 TACTTTATAACCTA
1 TACTATATAATTTA
*
10164049 TAGTATATAATTTA
1 TACTATATAATTTA
10164063 TA
1 TA
10164065 AACTATAGTT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.41, C:0.09, G:0.02, T:0.48
Consensus pattern (14 bp):
TACTATATAATTTA
Found at i:10164057 original size:21 final size:21
Alignment explanation
Indices: 10164033--10164078 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
10164023 CTATATAATT
* *
10164033 TATACTTTATAACCTATAGTA
1 TATAATTTATAAACTATAGTA
*
10164054 TATAATTTATAAACTATAGTT
1 TATAATTTATAAACTATAGTA
10164075 TATA
1 TATA
10164079 TTAATTTACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.04, T:0.46
Consensus pattern (21 bp):
TATAATTTATAAACTATAGTA
Found at i:10164139 original size:15 final size:15
Alignment explanation
Indices: 10164089--10164285 Score: 67
Period size: 15 Copynumber: 12.9 Consensus size: 15
10164079 TTAATTTACT
*
10164089 ATATAGTTTATATTA
1 ATATAATTTATATTA
* *
10164104 ATGTTAA-TTATCTTA
1 AT-ATAATTTATATTA
10164119 ACTATAATTTATATTA
1 A-TATAATTTATATTA
* * *
10164135 ATATAGTATATAGTTT
1 ATATAATTTATA-TTA
10164151 ATA-AACTATACTATATTA
1 ATATAA-T-T--TATATTA
10164169 ATATCAA-TTATATTA
1 ATAT-AATTTATATTA
*
10164184 ATATAAGTTAATATT-
1 ATATAA-TTTATATTA
*
10164199 A-AT-ATTAATATTA
1 ATATAATTTATATTA
*
10164212 AT-TATTTTAATATTA
1 ATATAATTT-ATATTA
10164227 ATTATAA--TATA-TA
1 A-TATAATTTATATTA
*
10164240 AT-TATTTTAATATTA
1 ATATAATTT-ATATTA
10164255 ATTATAAATAGTTA-ATTA
1 A-TAT-AAT--TTATATTA
*
10164273 ATATAAATTATAT
1 ATATAATTTATAT
10164286 AGGGATGAAA
Statistics
Matches: 136, Mismatches: 18, Indels: 56
0.65 0.09 0.27
Matches are distributed among these distances:
11 2 0.01
12 9 0.07
13 7 0.05
14 15 0.11
15 48 0.35
16 27 0.20
17 7 0.05
18 12 0.09
19 5 0.04
20 4 0.03
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (15 bp):
ATATAATTTATATTA
Found at i:10164187 original size:6 final size:6
Alignment explanation
Indices: 10164178--10164270 Score: 57
Period size: 6 Copynumber: 14.3 Consensus size: 6
10164168 AATATCAATT
*
10164178 ATATTA ATA-TA A-GTTA ATATTA ATATTA ATATTA ATTATTTTA ATATTA
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA A-TA--TTA ATATTA
*
10164227 AT-TATA ATATATA ATTATTTTA ATATTA ATTATAA ATAGTTA AT
1 ATAT-TA ATAT-TA A-TA--TTA ATATTA A-TATTA ATA-TTA AT
10164271 TAATATAAAT
Statistics
Matches: 71, Mismatches: 4, Indels: 23
0.72 0.04 0.23
Matches are distributed among these distances:
5 7 0.10
6 34 0.48
7 16 0.23
8 6 0.08
9 7 0.10
10 1 0.01
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (6 bp):
ATATTA
Found at i:10164243 original size:13 final size:12
Alignment explanation
Indices: 10164192--10164284 Score: 66
Period size: 12 Copynumber: 7.2 Consensus size: 12
10164182 TAATATAAGT
10164192 TAATATTAA-TA
1 TAATATTAATTA
10164203 TTAATATTAATTA
1 -TAATATTAATTA
10164216 TTTTAATATTAATTA
1 ---TAATATTAATTA
10164231 TAATATATAATTA
1 TAATAT-TAATTA
10164244 TTTTAATATTAATTA
1 ---TAATATTAATTA
10164259 TAAATAGTTAA-T-
1 T-AATA-TTAATTA
*
10164271 TAATATAAATTA
1 TAATATTAATTA
10164283 TA
1 TA
10164285 TAGGGATGAA
Statistics
Matches: 69, Mismatches: 1, Indels: 22
0.75 0.01 0.24
Matches are distributed among these distances:
10 3 0.04
11 5 0.07
12 19 0.28
13 13 0.19
14 4 0.06
15 19 0.28
16 6 0.09
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (12 bp):
TAATATTAATTA
Found at i:10164274 original size:52 final size:53
Alignment explanation
Indices: 10164164--10164284 Score: 135
Period size: 52 Copynumber: 2.3 Consensus size: 53
10164154 AACTATACTA
* * *
10164164 TATTAATATCAATTATATTAATATAAGTTAATATTAATATTAATATTAATTAT
1 TATTAATATAAATTATAATAATATAAGTTAATATTAATATTAATATTAAATAT
* *
10164217 T-TTAATATTAATTATAAT-ATATAA-TT-ATTTTAATATTAAT-TATAAATAGT
1 TATTAATATAAATTATAATAATATAAGTTAATATTAATATTAATAT-TAAATA-T
10164267 TAATTAATATAAATTATA
1 T-ATTAATATAAATTATA
10164285 TAGGGATGAA
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
48 1 0.02
49 18 0.31
50 4 0.07
51 6 0.10
52 29 0.49
53 1 0.02
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (53 bp):
TATTAATATAAATTATAATAATATAAGTTAATATTAATATTAATATTAAATAT
Found at i:10164282 original size:28 final size:27
Alignment explanation
Indices: 10164191--10164272 Score: 121
Period size: 28 Copynumber: 2.9 Consensus size: 27
10164181 TTAATATAAG
10164191 TTAATATTAA-TATTAATATTAATTATT
1 TTAATATTAATTA-TAATATTAATTATT
10164218 TTAATATTAATTATAATATATAATTATT
1 TTAATATTAATTATAATAT-TAATTATT
10164246 TTAATATTAATTATAAATAGTTAATTA
1 TTAATATTAATTAT-AATA-TTAATTA
10164273 ATATAAATTA
Statistics
Matches: 51, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
27 16 0.31
28 24 0.47
29 10 0.20
30 1 0.02
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.52
Consensus pattern (27 bp):
TTAATATTAATTATAATATTAATTATT
Found at i:10164521 original size:18 final size:19
Alignment explanation
Indices: 10164498--10164542 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
10164488 CATTTTGCTC
*
10164498 TCTCTCTAACTCTCTG-TT
1 TCTCTCTAACTCTCTGCCT
* *
10164516 TCTCTCAAATTCTCTGCCT
1 TCTCTCTAACTCTCTGCCT
10164535 TCTCTCTA
1 TCTCTCTA
10164543 GAAGTTCATC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.13, C:0.36, G:0.04, T:0.47
Consensus pattern (19 bp):
TCTCTCTAACTCTCTGCCT
Found at i:10165015 original size:13 final size:13
Alignment explanation
Indices: 10164993--10165046 Score: 58
Period size: 12 Copynumber: 4.3 Consensus size: 13
10164983 ACCTAACCTT
*
10164993 AACTTGAACCCTA
1 AACTTAAACCCTA
10165006 AACTTAAACCCTA
1 AACTTAAACCCTA
*
10165019 AACCT-AACCCTA
1 AACTTAAACCCTA
* *
10165031 AAC-CAAAACCTA
1 AACTTAAACCCTA
10165043 AACT
1 AACT
10165047 CGAACTCGAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
12 19 0.54
13 16 0.46
ACGTcount: A:0.46, C:0.33, G:0.02, T:0.19
Consensus pattern (13 bp):
AACTTAAACCCTA
Found at i:10165024 original size:6 final size:6
Alignment explanation
Indices: 10165002--10165045 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
10164992 TAACTTGAAC
* * *
10165002 CCTAAA CTTAAA CCCTAAA CCTAAC CCTAAA CCAAAA CCTAAA C
1 CCTAAA CCTAAA -CCTAAA CCTAAA CCTAAA CCTAAA CCTAAA C
10165046 TCGAACTCGA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
6 26 0.84
7 5 0.16
ACGTcount: A:0.48, C:0.36, G:0.00, T:0.16
Consensus pattern (6 bp):
CCTAAA
Found at i:10165052 original size:6 final size:6
Alignment explanation
Indices: 10165043--10165119 Score: 54
Period size: 6 Copynumber: 13.5 Consensus size: 6
10165033 CCAAAACCTA
* * *
10165043 AACTCG AACTCG AACCCG AACCCG AACCCG AAC-CG AACT-G AACT-G
1 AACTCG AACTCG AACTCG AACTCG AACTCG AACTCG AACTCG AACTCG
* * * * *
10165088 AACT-G AACCCA AACTCA AACCCG AACTTG AAC
1 AACTCG AACTCG AACTCG AACTCG AACTCG AAC
10165120 CCAAACCCGA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
5 19 0.31
6 42 0.69
ACGTcount: A:0.39, C:0.36, G:0.14, T:0.10
Consensus pattern (6 bp):
AACTCG
Found at i:10165062 original size:12 final size:12
Alignment explanation
Indices: 10165043--10165121 Score: 67
Period size: 12 Copynumber: 6.9 Consensus size: 12
10165033 CCAAAACCTA
*
10165043 AACTCGAACTCG
1 AACTCGAACCCG
*
10165055 AACCCGAACCCG
1 AACTCGAACCCG
*
10165067 AACCCGAA-CCG
1 AACTCGAACCCG
*
10165078 AACT-GAA-CTG
1 AACTCGAACCCG
*
10165088 AACT-GAACCCA
1 AACTCGAACCCG
*
10165099 AACTCAAACCCG
1 AACTCGAACCCG
*
10165111 AACTTGAACCC
1 AACTCGAACCC
10165122 AAACCCGAAT
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
10 12 0.22
11 11 0.20
12 32 0.58
ACGTcount: A:0.38, C:0.38, G:0.14, T:0.10
Consensus pattern (12 bp):
AACTCGAACCCG
Found at i:10165159 original size:18 final size:18
Alignment explanation
Indices: 10165140--10165175 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
10165130 ATCTAAATCC
10165140 AAATCCAAAACCTGAACCA
1 AAATCC-AAACCTGAACCA
*
10165159 AAATTCAAACCTGAACC
1 AAATCCAAACCTGAACC
10165176 CAGAACCCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.50, C:0.31, G:0.06, T:0.14
Consensus pattern (18 bp):
AAATCCAAACCTGAACCA
Found at i:10168452 original size:12 final size:11
Alignment explanation
Indices: 10168424--10168463 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
10168414 TTGAATTGAC
10168424 TCAAATGTTAT
1 TCAAATGTTAT
*
10168435 TCAAATTTTAT
1 TCAAATGTTAT
10168446 ATCAAATGTTAT
1 -TCAAATGTTAT
10168458 TCAAAT
1 TCAAAT
10168464 TATCATTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
11 16 0.62
12 10 0.38
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (11 bp):
TCAAATGTTAT
Found at i:10168741 original size:14 final size:14
Alignment explanation
Indices: 10168722--10168768 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
10168712 ATTTTTTCTT
10168722 TATATAAATTAAAC
1 TATATAAATTAAAC
10168736 TATAT-AATT----
1 TATATAAATTAAAC
10168745 TATATAAATTAAAC
1 TATATAAATTAAAC
*
10168759 TATATTAATT
1 TATATAAATT
10168769 TTCCTTTGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
13 4 0.15
14 14 0.52
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATAAATTAAAC
Found at i:10168747 original size:23 final size:24
Alignment explanation
Indices: 10168720--10168769 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
10168710 TTATTTTTTC
10168720 TTTATATAAATTAAACTATA-TAA
1 TTTATATAAATTAAACTATATTAA
10168743 TTTATATAAATTAAACTATATTAA
1 TTTATATAAATTAAACTATATTAA
10168767 TTT
1 TTT
10168770 TCCTTTGCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 20 0.77
24 6 0.23
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (24 bp):
TTTATATAAATTAAACTATATTAA
Found at i:10169010 original size:16 final size:16
Alignment explanation
Indices: 10168981--10169023 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
10168971 TTTCGTCCAT
*
10168981 GGTAATATAT-AAGTCG
1 GGTAA-ATATCAAGTCA
10168997 GGTAAATATCAAGTCA
1 GGTAAATATCAAGTCA
*
10169013 GATAAATATCA
1 GGTAAATATCA
10169024 TATCAGGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 4 0.17
16 20 0.83
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.28
Consensus pattern (16 bp):
GGTAAATATCAAGTCA
Found at i:10169083 original size:16 final size:16
Alignment explanation
Indices: 10169062--10169119 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
10169052 TACAGATCAT
*
10169062 GTTAAAAACATGTTAG
1 GTTAAAAACAAGTTAG
* *
10169078 GTTAAAAACAGGTCAG
1 GTTAAAAACAAGTTAG
* **
10169094 GTTCATCACAAGTTAG
1 GTTAAAAACAAGTTAG
*
10169110 GTTGAAAACA
1 GTTAAAAACA
10169120 GGTCGGGTAA
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.26
Consensus pattern (16 bp):
GTTAAAAACAAGTTAG
Found at i:10170062 original size:29 final size:29
Alignment explanation
Indices: 10170029--10170122 Score: 127
Period size: 28 Copynumber: 3.2 Consensus size: 29
10170019 TTATTTCATT
*
10170029 TAAGTACCTAAAGTACGTTTTGGTCAAAA
1 TAAGTACCTAAAGTACTTTTTGGTCAAAA
* *
10170058 TAAGTACCTAAAATTATATTTTTGGTCAAAA
1 TAAGTACCT-AAAGTA-CTTTTTGGTCAAAA
*
10170089 TAAGTATC-AAAGTACTTTTTGGTCAAAA
1 TAAGTACCTAAAGTACTTTTTGGTCAAAA
10170117 TAAGTA
1 TAAGTA
10170123 ATTAAAATAT
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
28 19 0.33
29 14 0.25
30 5 0.09
31 19 0.33
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (29 bp):
TAAGTACCTAAAGTACTTTTTGGTCAAAA
Found at i:10170160 original size:59 final size:59
Alignment explanation
Indices: 10169995--10170161 Score: 164
Period size: 59 Copynumber: 2.8 Consensus size: 59
10169985 CTTGTATAAC
* * *
10169995 AAATAAGTGCTTAAAATATATC-ATTTATTTCATTTAAGTACCTAAAGTACGTTTTGGTCA
1 AAATAAGTACTTAAAATAT-TCAATTT-TTTCATATAAGTATCTAAAGTACGTTTTGGTCA
* * *
10170055 AAATAAGTACCT-AAA-ATT-ATATTTTTGGTCAAAATAAGTATC-AAAGTACTTTTTGGTCA
1 AAATAAGTACTTAAAATATTCA-ATTTTT--TC-ATATAAGTATCTAAAGTACGTTTTGGTCA
* * *
10170114 AAATAAGTAATTAAAATATTCAATTTTTTCATCTAACTATCTAAAGTA
1 AAATAAGTACTTAAAATATTCAATTTTTTCATATAAGTATCTAAAGTA
10170162 TTCTTTAATT
Statistics
Matches: 87, Mismatches: 11, Indels: 19
0.74 0.09 0.16
Matches are distributed among these distances:
57 3 0.03
58 14 0.16
59 39 0.45
60 21 0.24
61 9 0.10
62 1 0.01
ACGTcount: A:0.41, C:0.11, G:0.10, T:0.39
Consensus pattern (59 bp):
AAATAAGTACTTAAAATATTCAATTTTTTCATATAAGTATCTAAAGTACGTTTTGGTCA
Found at i:10170329 original size:28 final size:28
Alignment explanation
Indices: 10170231--10170329 Score: 85
Period size: 28 Copynumber: 3.5 Consensus size: 28
10170221 TTTAGATATC
* * * *
10170231 TATTTTAACATAAAATACTTTAAATACA
1 TATTTTGACAAAAAATATTTTAAATACT
* * *
10170259 TATTTTGACCAAAATGATAGTTCTAGAT--T
1 TATTTTGA-CAAAA-AATA-TTTTAAATACT
*
10170288 TATTTTGACCAAAAATATTTTAAATACT
1 TATTTTGACAAAAAATATTTTAAATACT
10170316 TATTTTGACAAAAA
1 TATTTTGACAAAAA
10170330 TATAACTCTA
Statistics
Matches: 54, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
26 6 0.11
27 3 0.06
28 25 0.46
29 12 0.22
30 3 0.06
31 5 0.09
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.40
Consensus pattern (28 bp):
TATTTTGACAAAAAATATTTTAAATACT
Found at i:10170351 original size:30 final size:28
Alignment explanation
Indices: 10170259--10170359 Score: 82
Period size: 30 Copynumber: 3.5 Consensus size: 28
10170249 TTTAAATACA
*
10170259 TATTTTGACCAAAATGATAGTTCTAG--ATT
1 TATTTTGACAAAAAT-ATA--TCTAGATATT
* * *
10170288 TATTTTGACCAAAAATAT-TTTAAATACT
1 TATTTTGA-CAAAAATATATCTAGATATT
10170316 TATTTTGACAAAAATATAACTCTAGATATT
1 TATTTTGACAAAAATAT-A-TCTAGATATT
*
10170346 TATTTTAACAAAAA
1 TATTTTGACAAAAA
10170360 GCACTTAAAT
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
26 3 0.05
27 9 0.16
28 10 0.17
29 10 0.17
30 26 0.45
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.41
Consensus pattern (28 bp):
TATTTTGACAAAAATATATCTAGATATT
Found at i:10170358 original size:57 final size:58
Alignment explanation
Indices: 10170223--10170359 Score: 172
Period size: 57 Copynumber: 2.4 Consensus size: 58
10170213 TTGAACAATT
* * **
10170223 TAGATATCTATTTTAACATAAAATACTTTAAATACATATTTTGACCAAAATGATAGTTC
1 TAGATATTTATTTTAACA-AAAATACTTTAAATACATATTTTGACAAAAATGATAACTC
* * *
10170282 TAG--ATTTATTTTGACCAAAAATATTTTAAATACTTATTTTGACAAAAAT-ATAACTC
1 TAGATATTTATTTT-AACAAAAATACTTTAAATACATATTTTGACAAAAATGATAACTC
10170338 TAGATATTTATTTTAACAAAAA
1 TAGATATTTATTTTAACAAAAA
10170360 GCACTTAAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
56 8 0.12
57 44 0.66
58 12 0.18
59 3 0.04
ACGTcount: A:0.44, C:0.10, G:0.06, T:0.40
Consensus pattern (58 bp):
TAGATATTTATTTTAACAAAAATACTTTAAATACATATTTTGACAAAAATGATAACTC
Found at i:10170609 original size:23 final size:23
Alignment explanation
Indices: 10170574--10170621 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
10170564 TTAAAGTACA
*
10170574 ATAATATACTAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
*
10170597 ATAATGTAATAGGTAGCGCTTAT
1 ATAATATAATAGGTAGCGCTTAT
10170620 AT
1 AT
10170622 TGACCTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (23 bp):
ATAATATAATAGGTAGCGCTTAT
Found at i:10171123 original size:23 final size:22
Alignment explanation
Indices: 10171097--10171169 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 22
10171087 ATATTTTACA
*
10171097 ATATAAGCACTACCTATTACATT
1 ATATAA-CGCTACCTATTACATT
10171120 ATATAAACGCTACCTATTACATT
1 ATAT-AACGCTACCTATTACATT
*
10171143 ATATTAACGCTACCTATTACATC
1 ATA-TAACGCTACCTATTACATT
10171166 ATAT
1 ATAT
10171170 TTTTACCTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
22 1 0.02
23 42 0.91
24 3 0.07
ACGTcount: A:0.38, C:0.22, G:0.04, T:0.36
Consensus pattern (22 bp):
ATATAACGCTACCTATTACATT
Found at i:10171170 original size:23 final size:23
Alignment explanation
Indices: 10171106--10171170 Score: 112
Period size: 23 Copynumber: 2.8 Consensus size: 23
10171096 AATATAAGCA
*
10171106 CTACCTATTACATTATATAAACG
1 CTACCTATTACATTATATTAACG
10171129 CTACCTATTACATTATATTAACG
1 CTACCTATTACATTATATTAACG
*
10171152 CTACCTATTACATCATATT
1 CTACCTATTACATTATATT
10171171 TTTACCTATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.35, C:0.23, G:0.03, T:0.38
Consensus pattern (23 bp):
CTACCTATTACATTATATTAACG
Found at i:10171395 original size:490 final size:488
Alignment explanation
Indices: 10170695--10172478 Score: 3154
Period size: 490 Copynumber: 3.7 Consensus size: 488
10170685 TTATAATATG
*
10170695 TTGAAAGTGTCTATACTTTTTTATAAAAAAGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
1 TTGAAAGTGTCTATAC-TTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGT
10170760 TTCAA-TTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
65 TTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
*
10170824 CAAAAATTTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
130 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
10170889 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
195 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
10170954 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
260 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
* * * * *
10171019 CAAAAGATAACCATAAATGAATGTTTCCCACAATGAAAAAAGTATGGACACTTTTATAAAAATGA
325 CAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAAGGA
*
10171084 TAGATATTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATTA
390 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATA-TA
10171149 ACGCTACCTATTACATCATATTTTTACCTATTTTA
454 ACGCTACCTATTACATCATATTTTTACCTATTTTA
* * *
10171184 TTGAAAATGTTTATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
10171249 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCACTTGCA
66 TCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
10171314 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
130 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
* * *
10171379 TAACCAAAGGTAATAATAAACATGTAATATATATGTTTATTGTTTGTAATTTAATAATAATATAT
195 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
10171444 ACCGTAACGTAAAATATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
260 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
10171509 CAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAATATGAACACTTTTATAAAAAGGA
325 CAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAAGGA
10171574 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
390 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
* *
10171639 GCGCTACCTATTACATTATATTTTTACCTATTATA
455 -CGCTACCTATTACATCATATTTTTACCTATTTTA
* *
10171674 TTGAAACTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATATAATTTATGTT
1 TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
*
10171739 TCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTATAATATTAATTTAATAATTTCATTTGCA
66 TCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
*
10171804 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAGTAT
130 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
10171869 TAACCAAAG---ATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
195 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
*
10171931 ACTGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
260 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
*
10171996 CAAAAGATAACCTTAAGTGAATGTTTTCCACAGTGAAAAAAATATGGACAC-TTTATAAAAAGGA
325 CAAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAAGGA
*
10172060 TAGATACTTTACAATATAAGCACTACCTATTACATTATA-AAACGCTACCTATTACATTATA-AG
390 TAGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAA
10172123 CGCTACCTATTACATCATATTTTTACCTA--TTA
455 CGCTACCTATTACATCATATTTTTACCTATTTTA
10172155 TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATA-TTTTTTTAAAGTTATGTAATTTATGTT
1 TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
10172219 TCAATTTTTTTAATAGTGTTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
66 TCAATTTTTTTAATAGTG-TTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCA
10172284 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
130 CAAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATAT
10172349 TAACCAAAGATAATAAT-AATATGTAATATATATGTTTATTG-TTTTAATTTAATAATAATATAT
195 TAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATAT
10172412 A-CGTAACGTAAAAAAT-AATCATTAGACGCC--TAATTACTAAATT-A-ATCTTAAAACTCACT
260 ACCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACT
10172471 CAAAAGAT
325 CAAAAGAT
10172479 GTACATACCT
Statistics
Matches: 1249, Mismatches: 39, Indels: 28
0.95 0.03 0.02
Matches are distributed among these distances:
475 23 0.02
476 1 0.00
477 13 0.01
479 28 0.02
480 162 0.13
481 61 0.05
482 24 0.02
483 33 0.03
484 1 0.00
485 22 0.02
486 52 0.04
487 163 0.13
488 52 0.04
489 17 0.01
490 597 0.48
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (488 bp):
TTGAAAGTGTCTATACTTTTTATAAAAATGATCGATACTTTTTTTAAAGTTATGTAATTTATGTT
TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
AAAAAATTATTTGATTGTTTTGATATTTTATAAAATATTATTTAGTATTTAAATTTAACAATATT
AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAATAATATATA
CCGTAACGTAAAAAATAAATCATTAGACGCCTATAATTACTAAATTAATATCTTAAAACTCACTC
AAAAGATAACCTTAAATGAATGTTTTCCACAGTGAAAAAAATATGGACACTTTTATAAAAAGGAT
AGATACTTTACAATATAAGCACTACCTATTACATTATATAAACGCTACCTATTACATTATATAAC
GCTACCTATTACATCATATTTTTACCTATTTTA
Found at i:10171622 original size:23 final size:23
Alignment explanation
Indices: 10171587--10171659 Score: 128
Period size: 23 Copynumber: 3.2 Consensus size: 23
10171577 ATACTTTACA
*
10171587 ATATAAGCACTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
10171610 ATATAAACGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
10171633 ATATAAGCGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
10171656 ATAT
1 ATAT
10171660 TTTTACCTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.38, C:0.21, G:0.05, T:0.36
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:10172098 original size:21 final size:21
Alignment explanation
Indices: 10172068--10172137 Score: 104
Period size: 21 Copynumber: 3.3 Consensus size: 21
10172058 GATAGATACT
* *
10172068 TTACAATATAAGCACTACCTA
1 TTACATTATAAGCGCTACCTA
*
10172089 TTACATTATAAAACGCTACCTA
1 TTACATTAT-AAGCGCTACCTA
10172111 TTACATTATAAGCGCTACCTA
1 TTACATTATAAGCGCTACCTA
10172132 TTACAT
1 TTACAT
10172138 CATATTTTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
21 25 0.57
22 19 0.43
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.33
Consensus pattern (21 bp):
TTACATTATAAGCGCTACCTA
Found at i:10175655 original size:17 final size:17
Alignment explanation
Indices: 10175628--10175666 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
10175618 AATTTACAAT
10175628 TAATT-TAAATAATATC
1 TAATTATAAATAATATC
10175644 TAATTATAAATAATATC
1 TAATTATAAATAATATC
10175661 TAATTA
1 TAATTA
10175667 ATTTGATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATTATAAATAATATC
Found at i:10190410 original size:31 final size:30
Alignment explanation
Indices: 10190350--10190429 Score: 99
Period size: 31 Copynumber: 2.6 Consensus size: 30
10190340 AATGTTTACC
* * *
10190350 TTTTGTTTCATTTAGTA-CCGTTGTTAACT
1 TTTTGTTTTATTTAGTATCCATAGTTAACT
10190379 TTTTGTTTTATTTCAGTATCCATAGTTAACT
1 TTTTGTTTTATTT-AGTATCCATAGTTAACT
*
10190410 TTTTATTTTATTTTAGTATC
1 TTTTGTTTTA-TTTAGTATC
10190430 TAAAATTTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
29 12 0.27
30 4 0.09
31 25 0.57
32 3 0.07
ACGTcount: A:0.20, C:0.11, G:0.10, T:0.59
Consensus pattern (30 bp):
TTTTGTTTTATTTAGTATCCATAGTTAACT
Found at i:10199726 original size:45 final size:45
Alignment explanation
Indices: 10199665--10199762 Score: 117
Period size: 45 Copynumber: 2.2 Consensus size: 45
10199655 ATTTCAGGTA
* * * *
10199665 AAAAAATAATATTTTAGGTAGCATCAAATATTAACATTTCTGATAG
1 AAAAAATAATAGTTTAGATAGCACCAAATATTAACA-TTCCGATAG
* *
10199711 AAAAAATAAT-GTTTAGATAGCGCCCAATATTAACATTCCGATAG
1 AAAAAATAATAGTTTAGATAGCACCAAATATTAACATTCCGATAG
*
10199755 AACAAATA
1 AAAAAATA
10199763 TTATTTTATG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 15 0.33
45 20 0.44
46 10 0.22
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.30
Consensus pattern (45 bp):
AAAAAATAATAGTTTAGATAGCACCAAATATTAACATTCCGATAG
Found at i:10201902 original size:6 final size:6
Alignment explanation
Indices: 10201891--10201917 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
10201881 TCCTTTCATT
10201891 ACACAA ACACAA ACACAA ACACAA ACA
1 ACACAA ACACAA ACACAA ACACAA ACA
10201918 AAGAGCTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (6 bp):
ACACAA
Found at i:10203260 original size:44 final size:44
Alignment explanation
Indices: 10203192--10203286 Score: 181
Period size: 44 Copynumber: 2.2 Consensus size: 44
10203182 AATCAAGTCT
*
10203192 ACGATTGGAAGTAGTCATAAATTAAGGTAGTAGGATCTATTTAA
1 ACGAGTGGAAGTAGTCATAAATTAAGGTAGTAGGATCTATTTAA
10203236 ACGAGTGGAAGTAGTCATAAATTAAGGTAGTAGGATCTATTTAA
1 ACGAGTGGAAGTAGTCATAAATTAAGGTAGTAGGATCTATTTAA
10203280 ACGAGTG
1 ACGAGTG
10203287 AACTAAATTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (44 bp):
ACGAGTGGAAGTAGTCATAAATTAAGGTAGTAGGATCTATTTAA
Found at i:10205545 original size:2 final size:2
Alignment explanation
Indices: 10205538--10205630 Score: 186
Period size: 2 Copynumber: 46.5 Consensus size: 2
10205528 TAGCCCTCCA
10205538 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10205580 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10205622 AT AT AT AT A
1 AT AT AT AT A
10205631 GTTAGGATCC
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 91 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10206111 original size:18 final size:18
Alignment explanation
Indices: 10206088--10206122 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
10206078 CCAAATTCTA
10206088 AACCATAAACCCAAACCT
1 AACCATAAACCCAAACCT
*
10206106 AACCATAAACTCAAACC
1 AACCATAAACCCAAACC
10206123 CTAAACCCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.37, G:0.00, T:0.11
Consensus pattern (18 bp):
AACCATAAACCCAAACCT
Found at i:10206886 original size:29 final size:29
Alignment explanation
Indices: 10206845--10206901 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
10206835 ATTTTTATTT
10206845 TTATAATTATATTATT-ATAATATATAATG
1 TTATAATTATATT-TTAATAATATATAATG
* *
10206874 TTATACTTTTATTTTAATAATATATAAT
1 TTATAATTATATTTTAATAATATATAAT
10206902 AAATTATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 23 0.92
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (29 bp):
TTATAATTATATTTTAATAATATATAATG
Found at i:10207023 original size:14 final size:14
Alignment explanation
Indices: 10207006--10207035 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10206996 TTATATTGTT
10207006 ATTTTAATATTATA
1 ATTTTAATATTATA
*
10207020 ATTTTAATATTTTA
1 ATTTTAATATTATA
10207034 AT
1 AT
10207036 AATATTAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
ATTTTAATATTATA
Found at i:10207043 original size:17 final size:17
Alignment explanation
Indices: 10207017--10207065 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
10207007 TTTTAATATT
*
10207017 ATAATTTTAATATTTTA
1 ATAATATTAATATTTTA
*
10207034 ATAATATTAACATTTTA
1 ATAATATTAATATTTTA
10207051 ATAAGTAATTAATAT
1 ATAA-T-ATTAATAT
10207066 AATTAGTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 19 0.70
18 1 0.04
19 7 0.26
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (17 bp):
ATAATATTAATATTTTA
Found at i:10207063 original size:25 final size:26
Alignment explanation
Indices: 10207009--10207065 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
10206999 TATTGTTATT
**
10207009 TTAATATTATAATTTTAATATTTTAA
1 TTAATATTATAATTTTAATATAGTAA
10207035 -TAATATTA-ACATTTTAATA-AGTAA
1 TTAATATTATA-ATTTTAATATAGTAA
10207059 TTAATAT
1 TTAATAT
10207066 AATTAGTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 23 0.85
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (26 bp):
TTAATATTATAATTTTAATATAGTAA
Found at i:10207112 original size:22 final size:22
Alignment explanation
Indices: 10207045--10207128 Score: 61
Period size: 22 Copynumber: 3.9 Consensus size: 22
10207035 TAATATTAAC
*
10207045 ATTTTAATAAGTAATTAATATA
1 ATTTTAATAAATAATTAATATA
* * * *
10207067 A--TTAGT-AATATATTATTCTC
1 ATTTTAATAAATA-ATTAATATA
10207087 ATTTTAATAAATAATTAATATA
1 ATTTTAATAAATAATTAATATA
10207109 ATTTATAA-AAA-AATTTAATA
1 ATTT-TAATAAATAA-TTAATA
10207129 AAATATAATA
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
19 3 0.06
20 11 0.23
21 2 0.04
22 24 0.51
23 7 0.15
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (22 bp):
ATTTTAATAAATAATTAATATA
Found at i:10208674 original size:24 final size:24
Alignment explanation
Indices: 10208647--10208722 Score: 82
Period size: 24 Copynumber: 3.2 Consensus size: 24
10208637 TATATCAAAA
10208647 ATCAAAACATAAAT-CAGGTCAAGT
1 ATCAAAACA-AAATCCAGGTCAAGT
* *
10208671 ATCATATCAAAATCCAGGTCAAGT
1 ATCAAAACAAAATCCAGGTCAAGT
* * * *
10208695 ATCAGATCAGAATCCAAGTCAAGT
1 ATCAAAACAAAATCCAGGTCAAGT
10208719 ATCA
1 ATCA
10208723 GATCAGAATC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.09
24 42 0.91
ACGTcount: A:0.45, C:0.20, G:0.13, T:0.22
Consensus pattern (24 bp):
ATCAAAACAAAATCCAGGTCAAGT
Found at i:10208723 original size:24 final size:24
Alignment explanation
Indices: 10208664--10208779 Score: 171
Period size: 24 Copynumber: 4.8 Consensus size: 24
10208654 CATAAATCAG
* * *
10208664 GTCAAGTATCATATCAAAATCCAG
1 GTCAAGTATCAGATCAGAATCCAT
*
10208688 GTCAAGTATCAGATCAGAATCCAA
1 GTCAAGTATCAGATCAGAATCCAT
*
10208712 GTCAAGTATCAGATCAGAATCTAT
1 GTCAAGTATCAGATCAGAATCCAT
10208736 GTC-AGATATCAGATCAGAATCCAT
1 GTCAAG-TATCAGATCAGAATCCAT
10208760 GTCAAGTATCAGATCAGAAT
1 GTCAAGTATCAGATCAGAAT
10208780 TCAAATCGAA
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
23 2 0.02
24 80 0.95
25 2 0.02
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (24 bp):
GTCAAGTATCAGATCAGAATCCAT
Found at i:10209911 original size:18 final size:18
Alignment explanation
Indices: 10209890--10209925 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10209880 ATTCCATCCG
*
10209890 ATCTTATTATTTAATTCA
1 ATCTTATCATTTAATTCA
*
10209908 ATCTTATCATTTACTTCA
1 ATCTTATCATTTAATTCA
10209926 GTCCTTTCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.53
Consensus pattern (18 bp):
ATCTTATCATTTAATTCA
Found at i:10217640 original size:37 final size:36
Alignment explanation
Indices: 10217565--10217640 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
10217555 TTTTTATATT
*
10217565 TTTAATTTTGTAAAAAAATTATATAAATATTATGAA
1 TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
* *
10217601 TTTAATTTTTTAAAGAAAA-TATATAAATATTTTACAA
1 TTTAATTTTGTAAA-AAAATTATATAAATATTAT-CAA
10217638 TTT
1 TTT
10217641 GTAATATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
36 26 0.74
37 9 0.26
ACGTcount: A:0.47, C:0.01, G:0.04, T:0.47
Consensus pattern (36 bp):
TTTAATTTTGTAAAAAAATTATATAAATATTATCAA
Found at i:10221880 original size:12 final size:12
Alignment explanation
Indices: 10221848--10221881 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
10221838 ATCTTAGCTT
*
10221848 AATAAAAAAATA
1 AATAAAAATATA
*
10221860 AATAAAAATTTA
1 AATAAAAATATA
10221872 AATAAAAATA
1 AATAAAAATA
10221882 ATGATTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AATAAAAATATA
Found at i:10222620 original size:29 final size:28
Alignment explanation
Indices: 10222587--10222645 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
10222577 TAAAAAAACT
* *
10222587 TTTAATTTTTTTAAAAGTATAGTTTAAAA
1 TTTAA-TTATTTAAAAGTATAGTTAAAAA
* *
10222616 TTTAATTATTTGAAATTATAGTTAAAAA
1 TTTAATTATTTAAAAGTATAGTTAAAAA
10222644 TT
1 TT
10222646 ATGTTTAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 21 0.81
29 5 0.19
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (28 bp):
TTTAATTATTTAAAAGTATAGTTAAAAA
Found at i:10223582 original size:52 final size:51
Alignment explanation
Indices: 10223472--10223592 Score: 118
Period size: 52 Copynumber: 2.3 Consensus size: 51
10223462 TTTTATATTT
* **
10223472 TTATTATAGTTTAAATTAATATAATTTATATATAATAATAATTTTTTTAAA
1 TTATTATAGTTTAAATTAATATAATTCATATATAATAATAATTAATTTAAA
* * * **
10223523 TTAATTATAGTTTAAATTGATATGATTCATATATATTTGTAAATATAATTTAAA
1 TT-ATTATAGTTTAAATTAATATAATTCATATATAATAAT-AAT-TAATTTAAA
* *
10223577 -TATTATATTTTTAATT
1 TTATTATAGTTTAAATT
10223593 TACAACATAA
Statistics
Matches: 57, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
51 2 0.04
52 44 0.77
53 4 0.07
54 7 0.12
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (51 bp):
TTATTATAGTTTAAATTAATATAATTCATATATAATAATAATTAATTTAAA
Found at i:10227869 original size:10 final size:10
Alignment explanation
Indices: 10227854--10227880 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
10227844 AACATGTTAC
10227854 CAATTTGAAA
1 CAATTTGAAA
10227864 CAATTTGAAA
1 CAATTTGAAA
10227874 CAATTTG
1 CAATTTG
10227881 TATGTTACTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33
Consensus pattern (10 bp):
CAATTTGAAA
Found at i:10231455 original size:31 final size:31
Alignment explanation
Indices: 10231417--10231501 Score: 107
Period size: 31 Copynumber: 2.7 Consensus size: 31
10231407 CCAAATACTA
10231417 GTCAGGTTTGCATTCAGATAATGTAGAATAT
1 GTCAGGTTTGCATTCAGATAATGTAGAATAT
* * * * *
10231448 GTCAGGTTTGCATTAAAATAATGTATAGTTT
1 GTCAGGTTTGCATTCAGATAATGTAGAATAT
* *
10231479 GTAAGGTTTACATTCAGATAATG
1 GTCAGGTTTGCATTCAGATAATG
10231502 CATCGCATGT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (31 bp):
GTCAGGTTTGCATTCAGATAATGTAGAATAT
Found at i:10242325 original size:20 final size:21
Alignment explanation
Indices: 10242300--10242381 Score: 67
Period size: 23 Copynumber: 3.9 Consensus size: 21
10242290 TTTTGGTGCA
*
10242300 GAGGGAATCGATACCCCC-AT
1 GAGGGAACCGATACCCCCAAT
* **
10242320 GAGGGAACCGATTCCCCCTTT
1 GAGGGAACCGATACCCCCAAT
* *
10242341 GAAGGGGAACCGATTCCCCCAAC
1 G-A-GGGAACCGATACCCCCAAT
* *
10242364 GGGGGAATCGATACCCCC
1 GAGGGAACCGATACCCCC
10242382 TGGGGTTCTG
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
20 16 0.32
21 16 0.32
22 1 0.02
23 17 0.34
ACGTcount: A:0.26, C:0.33, G:0.27, T:0.15
Consensus pattern (21 bp):
GAGGGAACCGATACCCCCAAT
Found at i:10244033 original size:12 final size:12
Alignment explanation
Indices: 10244016--10244041 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
10244006 TGAGACTGAA
10244016 CAGCCCGAGGAG
1 CAGCCCGAGGAG
10244028 CAGCCCGAGGAG
1 CAGCCCGAGGAG
10244040 CA
1 CA
10244042 AGCACAACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.35, G:0.38, T:0.00
Consensus pattern (12 bp):
CAGCCCGAGGAG
Found at i:10250259 original size:21 final size:21
Alignment explanation
Indices: 10250235--10250330 Score: 66
Period size: 21 Copynumber: 4.5 Consensus size: 21
10250225 AGGTTAAGAT
*
10250235 CTTTCGATGAAAGGACTTAAC
1 CTTTTGATGAAAGGACTTAAC
* * * **
10250256 CTTTTTATTAAAAGACTTCTC
1 CTTTTGATGAAAGGACTTAAC
**
10250277 CTTTTGATGAAAGGGTTTAAC
1 CTTTTGATGAAAGGACTTAAC
* * * *
10250298 CTTTTTCATAAAAGGATTTAAT
1 C-TTTTGATGAAAGGACTTAAC
*
10250320 CTTTTCATGAA
1 CTTTTGATGAA
10250331 GAGAATTGAT
Statistics
Matches: 56, Mismatches: 18, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
21 39 0.70
22 17 0.30
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.41
Consensus pattern (21 bp):
CTTTTGATGAAAGGACTTAAC
Found at i:10255969 original size:131 final size:131
Alignment explanation
Indices: 10255735--10256013 Score: 362
Period size: 131 Copynumber: 2.1 Consensus size: 131
10255725 CCTTCATTTA
* * * * * * * * *
10255735 TTAAAGTAGTCATTTATTACTCCAATCGAAATGAATATATATCACTATTTCTTCTTAAAATTTAA
1 TTAAAGCAATCATTTATCAATCCAATCGAAATGAAGATATATCACTATTCCGTCTTAAAAATCAA
*
10255800 CATTGATTCAAGTAAAAACGATAATATCTAATAATTTCCAATCGAGAATAAATGACATCTCATGC
66 CATTAATTCAAGTAAAAACGATAATATCTAATAATTTCCAATCGAGAATAAATGACATCTCATGC
10255865 C
131 C
*
10255866 TTAAAGCAATCATTTATCAATCCAATCGAAATGAAGATATATCATTATTCCGTCTTAAAAATCAA
1 TTAAAGCAATCATTTATCAATCCAATCGAAATGAAGATATATCACTATTCCGTCTTAAAAATCAA
* ** * * * *
10255931 TATTAATTTGAG-AGAAAACGATAATATCTAATTATTTCCAATTGAGAATAAATGACCTCTCATT
66 CATTAATTCAAGTA-AAAACGATAATATCTAATAATTTCCAATCGAGAATAAATGACATCTCATG
*
10255995 CT
130 CC
*
10255997 TTAAAACAATCATTTAT
1 TTAAAGCAATCATTTAT
10256014 TACTCCTACT
Statistics
Matches: 127, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
130 1 0.01
131 126 0.99
ACGTcount: A:0.41, C:0.15, G:0.08, T:0.35
Consensus pattern (131 bp):
TTAAAGCAATCATTTATCAATCCAATCGAAATGAAGATATATCACTATTCCGTCTTAAAAATCAA
CATTAATTCAAGTAAAAACGATAATATCTAATAATTTCCAATCGAGAATAAATGACATCTCATGC
C
Found at i:10256490 original size:22 final size:23
Alignment explanation
Indices: 10256440--10256483 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
10256430 TTGGGCACCC
* *
10256440 AAAAATATTTTTCATTTTAAATA
1 AAAAATATTTTTCAATTAAAATA
10256463 AAAAATATTTTT-AATTAAAAT
1 AAAAATATTTTTCAATTAAAAT
10256484 GACAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (23 bp):
AAAAATATTTTTCAATTAAAATA
Found at i:10258840 original size:55 final size:55
Alignment explanation
Indices: 10258768--10258941 Score: 182
Period size: 55 Copynumber: 3.2 Consensus size: 55
10258758 TCTTTAAATG
* *
10258768 ACGGGTCCGCTCCCTATTTCTTCAGGGAGTATA-AGATTCGAACAATCTTCA-ACAA
1 ACGGGTCTGCTCCCTATTTCTTCAGGGAGTATAGA-ACTCGAACAATCTTCATA-AA
* *
10258823 ACGGGTCTGCTCCCTA-TTCATTCGGGGATTATAGAACTCGAACAATCTTCATAAA
1 ACGGGTCTGCTCCCTATTTC-TTCAGGGAGTATAGAACTCGAACAATCTTCATAAA
* * * * *
10258878 ACGAGTCTGCTCTCTATTCCTTCAGAGAATATAGAACTCG----ATCTTCATAAA
1 ACGGGTCTGCTCCCTATTTCTTCAGGGAGTATAGAACTCGAACAATCTTCATAAA
*
10258929 ACGGGTCCGCTCC
1 ACGGGTCTGCTCC
10258942 ACTACTCTTC
Statistics
Matches: 102, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
51 21 0.21
54 3 0.03
55 74 0.73
56 4 0.04
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (55 bp):
ACGGGTCTGCTCCCTATTTCTTCAGGGAGTATAGAACTCGAACAATCTTCATAAA
Found at i:10259042 original size:37 final size:37
Alignment explanation
Indices: 10258941--10259044 Score: 122
Period size: 37 Copynumber: 2.8 Consensus size: 37
10258931 GGGTCCGCTC
** * *
10258941 CACTACTCTTCCATGAAGGCTTATAGA-TGATTTGCTT
1 CACTACTCTTCTGTGAAGGCTTA-AGATTGAATTACTT
*
10258978 CATTACTCTTCTGTGAAGGCTTAAGATTGAATTACTT
1 CACTACTCTTCTGTGAAGGCTTAAGATTGAATTACTT
*
10259015 CACTGCTCTT-TGGTGAAGGCTTAAGATTGA
1 CACTACTCTTCT-GTGAAGGCTTAAGATTGA
10259045 CTTGTTTCGA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
36 4 0.07
37 54 0.93
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (37 bp):
CACTACTCTTCTGTGAAGGCTTAAGATTGAATTACTT
Found at i:10260250 original size:18 final size:17
Alignment explanation
Indices: 10260229--10260332 Score: 94
Period size: 17 Copynumber: 6.2 Consensus size: 17
10260219 TTGAACCCCC
10260229 TTTTATTTTCTTTTTTCA
1 TTTT-TTTTCTTTTTTCA
* *
10260247 -TTTTTCTCTTTCTT-A
1 TTTTTTTTCTTTTTTCA
10260262 --TTTTTTCATTTTTTCA
1 TTTTTTTTC-TTTTTTCA
*
10260278 TTTTTTTTCATTTTTCA
1 TTTTTTTTCTTTTTTCA
*
10260295 TTTTTTTT-TCTTTTCA
1 TTTTTTTTCTTTTTTCA
10260311 TTTCTTTTT-TTTTCTTCA
1 TTT-TTTTTCTTTT-TTCA
10260329 TTTT
1 TTTT
10260333 CATTCATTTT
Statistics
Matches: 72, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
14 6 0.08
15 6 0.08
16 19 0.26
17 27 0.38
18 14 0.19
ACGTcount: A:0.09, C:0.13, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTTTTCTTTTTTCA
Found at i:10260267 original size:23 final size:21
Alignment explanation
Indices: 10260239--10260343 Score: 79
Period size: 23 Copynumber: 4.6 Consensus size: 21
10260229 TTTTATTTTC
10260239 TTTTTTCATTTTTCTCTTTCTTA
1 TTTTTTCATTTTT-T-TTTCTTA
* *
10260262 TTTTTTCATTTTTTCATTTTTTT
1 TTTTTTCATTTTTT--TTTCTTA
10260285 TCATTTTTCATTTTTTTTTCTT-
1 T--TTTTTCATTTTTTTTTCTTA
*
10260307 TTCATTTC-TTTTTTTTTCTTCA
1 TT-TTTTCATTTTTTTTTCTT-A
10260329 TTTTCATTCATTTTT
1 TTTT--TTCATTTTT
10260344 CCATCTCTTT
Statistics
Matches: 67, Mismatches: 6, Indels: 17
0.74 0.07 0.19
Matches are distributed among these distances:
20 13 0.19
21 5 0.07
22 4 0.06
23 27 0.40
24 5 0.07
25 13 0.19
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTTTCATTTTTTTTTCTTA
Found at i:10260275 original size:10 final size:10
Alignment explanation
Indices: 10260239--10260343 Score: 58
Period size: 10 Copynumber: 10.3 Consensus size: 10
10260229 TTTTATTTTC
10260239 TTTTTTCATTT
1 TTTTTTCA-TT
10260250 TTCTCTTTC-TT
1 TT-T-TTTCATT
10260261 ATTTTTTCA--
1 -TTTTTTCATT
10260270 TTTTTTCATT
1 TTTTTTCATT
10260280 TTTTTTCATT
1 TTTTTTCATT
**
10260290 TTTCATTTTTTT
1 TTT--TTTCATT
10260302 TTCTTTTCATT
1 TT-TTTTCATT
*
10260313 TCTTTT--TT
1 TTTTTTCATT
*
10260321 TTTCTTCATT
1 TTTTTTCATT
**
10260331 TTCATTCATT
1 TTTTTTCATT
10260341 TTT
1 TTT
10260344 CCATCTCTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 23
0.69 0.09 0.22
Matches are distributed among these distances:
8 14 0.19
10 33 0.45
11 11 0.15
12 10 0.14
13 5 0.07
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTTCATT
Found at i:10260289 original size:41 final size:40
Alignment explanation
Indices: 10260234--10260336 Score: 115
Period size: 41 Copynumber: 2.5 Consensus size: 40
10260224 CCCCCTTTTA
*
10260234 TTTTCTTTTTTCATTTTTC-TCTTTCTTATT-TTTTCATTT-
1 TTTTTTTTTTTCATTTTTCAT-TTT-TTATTCTTTTCATTTC
*
10260273 TTTCATTTTTTTTCATTTTTCATTTTTTTTTCTTTTCATTTC
1 TTT--TTTTTTTTCATTTTTCATTTTTTATTCTTTTCATTTC
10260315 TTTTTTTTTCTTCA-TTTTCATT
1 TTTTTTTTT-TTCATTTTTCATT
10260337 CATTTTTCCA
Statistics
Matches: 56, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
39 3 0.05
40 18 0.32
41 31 0.55
42 4 0.07
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.77
Consensus pattern (40 bp):
TTTTTTTTTTTCATTTTTCATTTTTTATTCTTTTCATTTC
Found at i:10273974 original size:133 final size:133
Alignment explanation
Indices: 10273728--10274077 Score: 384
Period size: 133 Copynumber: 2.6 Consensus size: 133
10273718 TGAAAAGAGG
* * * * * * * *
10273728 GATTTATTCCACTGCTTCTTCATGGAAAATCAGATCTGGAAACGTTGATTCATTCCATTGTTTTT
1 GATTTGTTCCATTGTTTTTTCAGGGAAAATCAGATCTGGAAACGTTGATTCATTCAACTGTTCTT
* * *
10273793 CATGGAAGATTGAATCGAGGCAGACTTGTTCCACTACTACTCAAGGAAGATCAAATATGGAAAGA
66 CAGGGAAGATTGAATCGAGGCAGACTTATTCCACTACTAATCAAGGAAGATCAAATATGGAAAGA
**
10273858 GGG
131 GAA
* * *
10273861 GATATGTTTTACCA-T-TTTTTT-AGGGAAAATCAGATCTAGAAACGTTGATTCATTCTACTGTT
1 GAT-T-TGTT-CCATTGTTTTTTCAGGGAAAATCAGATCTGGAAACGTTGATTCATTCAACTGTT
* * * * * * * *
10273923 CTTCAGGGAAGATTGAATTGGGGCATATTTATTTCACTGCTAATTATGGAAGATCAAATATGGAA
63 CTTCAGGGAAGATTGAATCGAGGCAGACTTATTCCACTACTAATCAAGGAAGATCAAATATGGAA
10273988 AGAGAA
128 AGAGAA
* * *
10273994 GATTTGTTCCATTGTTTTTTCAGGGAAAATTAGATAC-GGAGACGTTGATTCATTGAACTGTTCT
1 GATTTGTTCCATTGTTTTTTCAGGGAAAATCAGAT-CTGGAAACGTTGATTCATTCAACTGTTCT
*
10274058 TTAGGGAAGATTGAATCGAG
65 TCAGGGAAGATTGAATCGAG
10274078 TTCAATTTTC
Statistics
Matches: 180, Mismatches: 30, Indels: 14
0.80 0.13 0.06
Matches are distributed among these distances:
130 3 0.02
131 4 0.02
132 7 0.04
133 153 0.85
134 6 0.03
135 4 0.02
136 3 0.02
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34
Consensus pattern (133 bp):
GATTTGTTCCATTGTTTTTTCAGGGAAAATCAGATCTGGAAACGTTGATTCATTCAACTGTTCTT
CAGGGAAGATTGAATCGAGGCAGACTTATTCCACTACTAATCAAGGAAGATCAAATATGGAAAGA
GAA
Found at i:10275349 original size:14 final size:14
Alignment explanation
Indices: 10275323--10275409 Score: 68
Period size: 15 Copynumber: 5.8 Consensus size: 14
10275313 TTAAACCACC
10275323 TTTTATTTATTCTTT
1 TTTTATTT-TTCTTT
*
10275338 TTTTGTTTTTCTTTCTT
1 TTTTATTTTTC--T-TT
10275355 TTTCTATTTTTCATTT
1 TTT-TATTTTTC-TTT
*
10275371 TTTT-CTTTTCTTT
1 TTTTATTTTTCTTT
*
10275384 TTTTATTCATTCTTT
1 TTTTATT-TTTCTTT
*
10275399 TTTCATTTTTC
1 TTTTATTTTTC
10275410 CCTTCAAGTG
Statistics
Matches: 58, Mismatches: 8, Indels: 13
0.73 0.10 0.16
Matches are distributed among these distances:
13 7 0.12
14 12 0.21
15 20 0.34
16 6 0.10
17 6 0.10
18 7 0.12
ACGTcount: A:0.08, C:0.13, G:0.01, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTCTTT
Found at i:10275372 original size:32 final size:32
Alignment explanation
Indices: 10275326--10275387 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 32
10275316 AACCACCTTT
*
10275326 TATTTATTC-TTTTTTTGTTTTTCTTTCTTTTTC
1 TATTTATTCATTTTTTT-CTTTTCTTT-TTTTTC
10275359 TATTT-TTCATTTTTTTCTTTTCTTTTTTT
1 TATTTATTCATTTTTTTCTTTTCTTTTTTT
10275388 ATTCATTCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 4 0.15
32 11 0.41
33 12 0.44
ACGTcount: A:0.06, C:0.11, G:0.02, T:0.81
Consensus pattern (32 bp):
TATTTATTCATTTTTTTCTTTTCTTTTTTTTC
Found at i:10275399 original size:28 final size:27
Alignment explanation
Indices: 10275343--10275401 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 27
10275333 TCTTTTTTTG
*
10275343 TTTTTCTTTCTTTTTCTATTTTTCATT
1 TTTTTCTTTCTTTTTCTATTATTCATT
*
10275370 TTTTTCTTTTCTTTTTTTATTCATTC-TT
1 TTTTTC-TTTCTTTTTCTATT-ATTCATT
10275398 TTTT
1 TTTT
10275402 CATTTTTCCC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 6 0.21
28 19 0.68
29 3 0.11
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.80
Consensus pattern (27 bp):
TTTTTCTTTCTTTTTCTATTATTCATT
Found at i:10281301 original size:21 final size:21
Alignment explanation
Indices: 10281277--10281322 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
10281267 GGATCAATTA
10281277 TTTTCCCTGACAGATCGATCC
1 TTTTCCCTGACAGATCGATCC
**
10281298 TTTTCCCTGAGGGATCGATCC
1 TTTTCCCTGACAGATCGATCC
10281319 TTTT
1 TTTT
10281323 AAAAATAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.15, C:0.28, G:0.17, T:0.39
Consensus pattern (21 bp):
TTTTCCCTGACAGATCGATCC
Found at i:10286579 original size:18 final size:18
Alignment explanation
Indices: 10286556--10286607 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
10286546 ATATAACACA
*
10286556 TATGTCCCGAATGACCAC
1 TATGTCCCGAAGGACCAC
*
10286574 TATGTCCCGAAGGACCAT
1 TATGTCCCGAAGGACCAC
10286592 TATGTCCCGAAGGACC
1 TATGTCCCGAAGGACC
10286608 GCGTAGACCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (18 bp):
TATGTCCCGAAGGACCAC
Found at i:10289160 original size:21 final size:21
Alignment explanation
Indices: 10289135--10289183 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
10289125 ATTTGTATCT
10289135 TCTCTGTTTTTTTTTTCTGTC
1 TCTCTGTTTTTTTTTTCTGTC
*
10289156 TCTCTCTTTTTTTTTTCTGTC
1 TCTCTGTTTTTTTTTTCTGTC
10289177 TCTCTGT
1 TCTCTGT
10289184 CCCGTTCTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.00, C:0.22, G:0.08, T:0.69
Consensus pattern (21 bp):
TCTCTGTTTTTTTTTTCTGTC
Found at i:10289655 original size:3 final size:3
Alignment explanation
Indices: 10289647--10289744 Score: 160
Period size: 3 Copynumber: 32.7 Consensus size: 3
10289637 AATATATATT
* *
10289647 TAA TAA TAA TAA TAA TAA TGA TGA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
10289695 TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA TAT TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10289743 TA
1 TA
10289745 TGGATAAAAA
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 89 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:10290204 original size:112 final size:113
Alignment explanation
Indices: 10290063--10290313 Score: 346
Period size: 116 Copynumber: 2.2 Consensus size: 113
10290053 ATAGAATTAT
* * *
10290063 GCAAAAAGTTGAACAAGTTCTTCTTATTATGAACTTCTTCTTTCTTCTTCAGAT-GAGTTCTTCT
1 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAGAGTTCTTCT
*
10290127 CATTATGAACTTCT-CTGGAAATGCTGATCCATCAAATGATGGATTC-A
66 CATTATGAAC-TCTACTGGAAATGCTGATCCATCAAATGATGAATTCAA
* * *
10290174 GATAAAAGGTTGAACAAATTCTTCTCATTATTAACTTCTTCTTCCTTCTTCAGATGACGAGTTCT
1 G-CAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT-A-GAGTTCT
* *
10290239 TCTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAA
63 TCTCATTATGAACTCTA-CTGGAAATGCTGATCCATCAAATGATGAATTCAA
*
10290291 GCAAAAGATTGAACAAGTTCTTC
1 GCAAAAGGTTGAACAAGTTCTTC
10290314 ATTCTTCAGA
Statistics
Matches: 121, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
111 1 0.01
112 47 0.39
114 3 0.02
115 20 0.17
116 48 0.40
117 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.37
Consensus pattern (113 bp):
GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAGAGTTCTTCT
CATTATGAACTCTACTGGAAATGCTGATCCATCAAATGATGAATTCAA
Found at i:10290387 original size:93 final size:94
Alignment explanation
Indices: 10290212--10290406 Score: 225
Period size: 93 Copynumber: 2.1 Consensus size: 94
10290202 TATTAACTTC
* * *** *
10290212 TTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCA
1 TTCTTCATTCTTCAGAT-A-GAGTTCTTCTCATTATGAACTCTACCTGGAAAAAATAATCCATCA
*
10290277 AATGATGAATTCAAGCAAAAGATTGAACAAG
64 AATGATGAATTCAAGCAAAAGATTGAACAAA
*
10290308 TTCTTCATTCTTCAGAT-GAGTTCTTCTCATTATGAACT-TTCTCTGGAAAAAATAATCCATCAA
1 TTCTTCATTCTTCAGATAGAGTTCTTCTCATTATGAACTCTAC-CTGGAAAAAATAATCCATCAA
* ** *
10290371 GTGAT-AGATTTGAGCAAAAGGTTGAACAAA
65 ATGATGA-ATTCAAGCAAAAGATTGAACAAA
10290401 TTCTTC
1 TTCTTC
10290407 TTATTATGAA
Statistics
Matches: 85, Mismatches: 12, Indels: 7
0.82 0.12 0.07
Matches are distributed among these distances:
92 3 0.04
93 66 0.78
96 16 0.19
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (94 bp):
TTCTTCATTCTTCAGATAGAGTTCTTCTCATTATGAACTCTACCTGGAAAAAATAATCCATCAAA
TGATGAATTCAAGCAAAAGATTGAACAAA
Found at i:10290466 original size:209 final size:208
Alignment explanation
Indices: 10290107--10290717 Score: 732
Period size: 209 Copynumber: 2.8 Consensus size: 208
10290097 TTCTTCTTTC
*** * *
10290107 TTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAATGCTGATCCATCAAATGATGGATT
1 TTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAAATAATCCATCAAATGATAGATT
* *
10290172 CAGATAAAAGGTTGAACAAATTCTTCTCATTATTAACTTCTTCTTCCTTCTTCAGATGACGAGTT
66 CAGACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTT
*
10290237 CTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAGC-AAAAGATT
131 CTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAAG-TT
10290301 GAACAAGTTCTTCA
195 GAACAAGTTCTTCA
*
10290315 TTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAAATAATCCATCAAGTGATAGAT
1 TTCTTCAGATGAGTTCTTCTCATTATGAAC-TTCTCTGGAAAAAATAATCCATCAAATGATAGAT
* *
10290380 T-TGAGCAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGACGAG
65 TCAGA-CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAG
10290444 TTCTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAAGT
129 TTCTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAAGT
10290509 TGAACAAGTTCTTCTCATTATGAA
194 TGAACAAGTTC-T-TC-------A
*** * **
10290533 CTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAAATAATCCATC
1 ----TTCTT-C-AGATGAG-T-TCTTCT---CATTATGAAC-TTCTCTGGAAAAAATAATCCATC
* * *
10290598 AAGTGATAGATT-TGAGCAAAAGGTTGAACAAATTCTTCTAATTATGAACTTCTTCTTCCTTCTT
54 AAATGATAGATTCAGA-CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTT
* * *
10290662 CAGAT---GAGTTCTTCTCATTATGAAC-CTTCTCTGGCAATGATAATCCATCAAATGAT
118 CAGATGACGAGTTCTTCTCATTATGAACTCTAC-CTGGCAATGTTGATCCATCAAATGAT
10290718 ATATTTGAAT
Statistics
Matches: 358, Mismatches: 21, Indels: 30
0.88 0.05 0.07
Matches are distributed among these distances:
208 32 0.09
209 154 0.43
210 6 0.02
211 2 0.01
218 1 0.00
222 5 0.01
223 1 0.00
224 3 0.01
225 4 0.01
226 48 0.13
229 102 0.28
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (208 bp):
TTCTTCAGATGAGTTCTTCTCATTATGAACTTCTCTGGAAAAAATAATCCATCAAATGATAGATT
CAGACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTT
CTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAAGTTG
AACAAGTTCTTCA
Found at i:10290505 original size:116 final size:113
Alignment explanation
Indices: 10290308--10290725 Score: 588
Period size: 113 Copynumber: 3.7 Consensus size: 113
10290298 ATTGAACAAG
* *
10290308 TTCTTCATTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAAATAATCCATCAAGT
1 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAAATAATCCATCAAAT
*
10290373 GATAGATTTGAGCAAAAGGTTGAACAAATTCTTCTTATTATGAACTTC
66 GATAGATTTGAGCAAAAGGTTGAACAAATTCTTCTAATTATGAACTTC
* * *** *
10290421 TTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTAC-CTGGCAATGTTGATCCATC
1 TTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACT-TTCTCTGGAAAAAATAATCCATC
** * * * *
10290485 AAATGAT-GAATTCAAACAAAAAGTTGAACAAGTTCTTCTCATTATGAACTTC
62 AAATGATAG-ATTTGAGCAAAAGGTTGAACAAATTCTTCTAATTATGAACTTC
*
10290537 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAAATAATCCATCAAGT
1 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAAATAATCCATCAAAT
10290602 GATAGATTTGAGCAAAAGGTTGAACAAATTCTTCTAATTATGAACTTC
66 GATAGATTTGAGCAAAAGGTTGAACAAATTCTTCTAATTATGAACTTC
* * **
10290650 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACCTTCTCTGGCAATGATAATCCATCAAAT
1 TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAAATAATCCATCAAAT
*
10290715 GATATATTTGA
66 GATAGATTTGA
10290726 ATCTTTGCTA
Statistics
Matches: 265, Mismatches: 33, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
112 2 0.01
113 164 0.62
114 1 0.00
115 1 0.00
116 95 0.36
117 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (113 bp):
TTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAAATAATCCATCAAAT
GATAGATTTGAGCAAAAGGTTGAACAAATTCTTCTAATTATGAACTTC
Found at i:10291502 original size:83 final size:83
Alignment explanation
Indices: 10291363--10291654 Score: 532
Period size: 83 Copynumber: 3.5 Consensus size: 83
10291353 GTTCCTACTA
10291363 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
*
10291428 CAATGATTGGTTTTGTCC
66 CAATGATTGGTTCTGTCC
* *
10291446 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATCGGCAAATTCATCTTCCAAATT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
10291511 CAATGATTGGTTCTG-CC
66 CAATGATTGGTTCTGTCC
10291528 AAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAAT
1 -AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAAT
10291593 TCAATGATTGGTTCTGTCC
65 TCAATGATTGGTTCTGTCC
*
10291612 AACCAGATCAGATAACTCAAAGAACACTTCCAAAAGATGCTAT
1 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTAT
10291655 GAGTCTCTTT
Statistics
Matches: 201, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
82 2 0.01
83 197 0.98
84 2 0.01
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (83 bp):
AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTGGCAAATTCATCTTCTAAATT
CAATGATTGGTTCTGTCC
Found at i:10292449 original size:19 final size:20
Alignment explanation
Indices: 10292427--10292468 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
10292417 AATAGAAAAG
*
10292427 AATAAATTGAATTTCCAA-A
1 AATAAATTGAATCTCCAATA
10292446 AATAAATTGAATCTCCAATA
1 AATAAATTGAATCTCCAATA
10292466 AAT
1 AAT
10292469 TGAACTTGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.52, C:0.12, G:0.05, T:0.31
Consensus pattern (20 bp):
AATAAATTGAATCTCCAATA
Found at i:10303201 original size:18 final size:17
Alignment explanation
Indices: 10303152--10303204 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
10303142 AAATACTTGC
*
10303152 AAATAAAATAAAACATAT
1 AAAT-AAATAAAAAATAT
*
10303170 AAATATTATAAAAAAATAAT
1 AAATA-AAT-AAAAAAT-AT
10303190 AAATAAATAAAAAAT
1 AAATAAATAAAAAAT
10303205 TTGAAAAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 1 0.03
18 13 0.45
19 8 0.28
20 7 0.24
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.25
Consensus pattern (17 bp):
AAATAAATAAAAAATAT
Found at i:10304944 original size:19 final size:19
Alignment explanation
Indices: 10304916--10304960 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
10304906 GTTTGTATCT
*
10304916 TCTCTGTTTTTTTTTTCTG
1 TCTCTCTTTTTTTTTTCTG
10304935 TCTCTCTTTTTTTTTTCTG
1 TCTCTCTTTTTTTTTTCTG
10304954 TCTCTCT
1 TCTCTCT
10304961 GTCCCGTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.00, C:0.22, G:0.07, T:0.71
Consensus pattern (19 bp):
TCTCTCTTTTTTTTTTCTG
Found at i:10305436 original size:3 final size:3
Alignment explanation
Indices: 10305428--10305528 Score: 166
Period size: 3 Copynumber: 33.7 Consensus size: 3
10305418 AATATATATT
*
10305428 TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
10305476 TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAT TAA TAT TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10305524 TAA TA
1 TAA TA
10305529 TGGATAAAAA
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 90 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:10308257 original size:17 final size:18
Alignment explanation
Indices: 10308235--10308274 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
10308225 ATCTTCATTC
10308235 TTATCATT-ATCATTT-TA
1 TTATCATTCAT-ATTTATA
10308252 TTATCATTCATATTTATA
1 TTATCATTCATATTTATA
10308270 TTATC
1 TTATC
10308275 TTGTTCATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.57
Consensus pattern (18 bp):
TTATCATTCATATTTATA
Found at i:10308291 original size:18 final size:18
Alignment explanation
Indices: 10308270--10308312 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
10308260 CATATTTATA
*
10308270 TTATCTTGTTCATATGAT
1 TTATCTTGTTCATATCAT
10308288 TTAT-TATGTTCATATCAT
1 TTATCT-TGTTCATATCAT
*
10308306 ATATCTT
1 TTATCTT
10308313 ATAACATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.26, C:0.12, G:0.07, T:0.56
Consensus pattern (18 bp):
TTATCTTGTTCATATCAT
Found at i:10310725 original size:20 final size:20
Alignment explanation
Indices: 10310702--10310743 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
10310692 CCCTTTCCCC
*
10310702 AAGGGATCTATCCTTTTGAA
1 AAGGGATCGATCCTTTTGAA
* *
10310722 AAGGGATCGATTCTTTTTAA
1 AAGGGATCGATCCTTTTGAA
10310742 AA
1 AA
10310744 ATGATTGACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (20 bp):
AAGGGATCGATCCTTTTGAA
Found at i:10310744 original size:21 final size:20
Alignment explanation
Indices: 10310702--10310744 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
10310692 CCCTTTCCCC
* *
10310702 AAGGGATCTATCCTTTTGAA
1 AAGGGATCGATCCTTTTAAA
*
10310722 AAGGGATCGATTCTTTTTAAA
1 AAGGGATCGA-TCCTTTTAAA
10310743 AA
1 AA
10310745 TGATTGACTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.35
Consensus pattern (20 bp):
AAGGGATCGATCCTTTTAAA
Found at i:10315884 original size:314 final size:314
Alignment explanation
Indices: 10315315--10315946 Score: 1246
Period size: 314 Copynumber: 2.0 Consensus size: 314
10315305 CATACTTTGG
10315315 AAAATAAATTCCAAACAAATTTTTCGATGCTAATTCTATATAATTTTCATGTCACAACAAAAATG
1 AAAATAAATTCCAAACAAATTTTTCGATGCTAATTCTATATAATTTTCATGTCACAACAAAAATG
10315380 TTAACCTTAATACTTCTAATTGGCCACTAAATTTCCTTTTTATCCCAATTTCACATAACATTTTC
66 TTAACCTTAATACTTCTAATTGGCCACTAAATTTCCTTTTTATCCCAATTTCACATAACATTTTC
10315445 ATTTAAGCTCCCAACCTTTCCATATTTTTGATTTAAACTTCAACTTTTACAAGCTTTCCAAAATA
131 ATTTAAGCTCCCAACCTTTCCATATTTTTGATTTAAACTTCAACTTTTACAAGCTTTCCAAAATA
10315510 ATCCAATTTCACATATGAACTTCAATTTCAACACTCAAACATTAATTTATAAACTACTGAACAAT
196 ATCCAATTTCACATATGAACTTCAATTTCAACACTCAAACATTAATTTATAAACTACTGAACAAT
*
10315575 TACACAACAATCCAGAACTTATCCAAAATTTTTGATTTGGTCCCCCAAGTTCTC
261 TACACAACAATCCAGAACTTATACAAAATTTTTGATTTGGTCCCCCAAGTTCTC
10315629 AAAATAAATTCCAAACAAATTTTTCGATGCTAATTCTATATAATTTTCATGTCACAACAAAAATG
1 AAAATAAATTCCAAACAAATTTTTCGATGCTAATTCTATATAATTTTCATGTCACAACAAAAATG
10315694 TTAACCTTAATACTTCTAATTGGCCACTAAATTTCCTTTTTATCCCAATTTCACATAACATTTTC
66 TTAACCTTAATACTTCTAATTGGCCACTAAATTTCCTTTTTATCCCAATTTCACATAACATTTTC
10315759 ATTTAAGCTCCCAACCTTTCCATATTTTTGATTTAAACTTCAACTTTTACAAGCTTTCCAAAATA
131 ATTTAAGCTCCCAACCTTTCCATATTTTTGATTTAAACTTCAACTTTTACAAGCTTTCCAAAATA
*
10315824 ATCCAATTTCACATCTGAACTTCAATTTCAACACTCAAACATTAATTTATAAACTACTGAACAAT
196 ATCCAATTTCACATATGAACTTCAATTTCAACACTCAAACATTAATTTATAAACTACTGAACAAT
10315889 TACACAACAATCCAGAACTTATACAAAATTTTTGATTTGGTCCCCCAAGTTCTC
261 TACACAACAATCCAGAACTTATACAAAATTTTTGATTTGGTCCCCCAAGTTCTC
10315943 AAAA
1 AAAA
10315947 ATTACATAAT
Statistics
Matches: 316, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
314 316 1.00
ACGTcount: A:0.37, C:0.22, G:0.05, T:0.36
Consensus pattern (314 bp):
AAAATAAATTCCAAACAAATTTTTCGATGCTAATTCTATATAATTTTCATGTCACAACAAAAATG
TTAACCTTAATACTTCTAATTGGCCACTAAATTTCCTTTTTATCCCAATTTCACATAACATTTTC
ATTTAAGCTCCCAACCTTTCCATATTTTTGATTTAAACTTCAACTTTTACAAGCTTTCCAAAATA
ATCCAATTTCACATATGAACTTCAATTTCAACACTCAAACATTAATTTATAAACTACTGAACAAT
TACACAACAATCCAGAACTTATACAAAATTTTTGATTTGGTCCCCCAAGTTCTC
Found at i:10316875 original size:4 final size:4
Alignment explanation
Indices: 10316868--10316914 Score: 94
Period size: 4 Copynumber: 11.8 Consensus size: 4
10316858 GTATGTATGT
10316868 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
10316915 CATAGTTGAA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:10348563 original size:2 final size:2
Alignment explanation
Indices: 10348556--10348586 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
10348546 TCAATCTACA
10348556 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
10348587 ACAATAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10348771 original size:13 final size:13
Alignment explanation
Indices: 10348755--10348803 Score: 62
Period size: 13 Copynumber: 3.8 Consensus size: 13
10348745 GCTCAATGAA
10348755 CGTCATAAATGCG
1 CGTCATAAATGCG
* *
10348768 CGTCACAAATGTG
1 CGTCATAAATGCG
* *
10348781 TGTCATAAATGCA
1 CGTCATAAATGCG
10348794 CGTCATAAAT
1 CGTCATAAAT
10348804 TTATGACGCA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (13 bp):
CGTCATAAATGCG
Found at i:10348778 original size:26 final size:26
Alignment explanation
Indices: 10348749--10348803 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
10348739 AATGACGCTC
*
10348749 AATGAACGTCATAAATGCGCGTCACA
1 AATGAACGTCATAAATGCACGTCACA
*** *
10348775 AATGTGTGTCATAAATGCACGTCATA
1 AATGAACGTCATAAATGCACGTCACA
10348801 AAT
1 AAT
10348804 TTATGACGCA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.25
Consensus pattern (26 bp):
AATGAACGTCATAAATGCACGTCACA
Found at i:10351703 original size:20 final size:21
Alignment explanation
Indices: 10351657--10351707 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
10351647 CTCAGTTTCC
*
10351657 AGATTCGCAACGTGAATATCC
1 AGATTCGCAACGTGAATATCA
* *
10351678 AGATTCGCAACGTGATTGT-A
1 AGATTCGCAACGTGAATATCA
10351698 AGATTCGCAA
1 AGATTCGCAA
10351708 TGCGATTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (21 bp):
AGATTCGCAACGTGAATATCA
Found at i:10351768 original size:22 final size:22
Alignment explanation
Indices: 10351714--10351770 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 22
10351704 GCAATGCGAT
*
10351714 TTTGAAAAATGTGTTGCGATAG
1 TTTGAAAAATGTGTTGCGAGAG
10351736 -TT--AAAATGTGTTGCGAGAG
1 TTTGAAAAATGTGTTGCGAGAG
*
10351755 TTTGAAAAACGTGTTG
1 TTTGAAAAATGTGTTG
10351771 TTGCAATAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 16 0.53
20 2 0.07
21 2 0.07
22 10 0.33
ACGTcount: A:0.32, C:0.05, G:0.28, T:0.35
Consensus pattern (22 bp):
TTTGAAAAATGTGTTGCGAGAG
Found at i:10351785 original size:22 final size:19
Alignment explanation
Indices: 10351716--10351805 Score: 72
Period size: 19 Copynumber: 4.4 Consensus size: 19
10351706 AATGCGATTT
*
10351716 TGAAAAATGTGTTGCGATAG
1 TGAAAAA-GTGTTGTGATAG
* * * *
10351736 TTAAAATGTGTTGCGAGAG
1 TGAAAAAGTGTTGTGATAG
10351755 TTTGAAAAACGTGTTGTTGCAATAG
1 --TGAAAAA-GTGTTG-TG--ATAG
10351780 TGAAAAAGTGTTGTGATAG
1 TGAAAAAGTGTTGTGATAG
10351799 TGAAAAA
1 TGAAAAA
10351806 TCCAAAATAA
Statistics
Matches: 57, Mismatches: 7, Indels: 13
0.74 0.09 0.17
Matches are distributed among these distances:
19 22 0.39
20 5 0.09
21 7 0.12
22 12 0.21
23 8 0.14
25 3 0.05
ACGTcount: A:0.37, C:0.04, G:0.28, T:0.31
Consensus pattern (19 bp):
TGAAAAAGTGTTGTGATAG
Found at i:10352057 original size:15 final size:16
Alignment explanation
Indices: 10352037--10352067 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
10352027 TCCCGTCTCA
10352037 GGTCAGGTCG-GGTCG
1 GGTCAGGTCGTGGTCG
10352052 GGTCAGGTCGTGGTCG
1 GGTCAGGTCGTGGTCG
10352068 TGATCGTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.06, C:0.19, G:0.52, T:0.23
Consensus pattern (16 bp):
GGTCAGGTCGTGGTCG
Found at i:10357671 original size:13 final size:15
Alignment explanation
Indices: 10357641--10357672 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
10357631 ATATACAAAG
10357641 TAAAATATATCGATA
1 TAAAATATATCGATA
10357656 TAAAA-ATATC-ATA
1 TAAAATATATCGATA
10357669 TAAA
1 TAAA
10357673 CCATATTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 5 0.29
15 5 0.29
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.31
Consensus pattern (15 bp):
TAAAATATATCGATA
Found at i:10370765 original size:55 final size:55
Alignment explanation
Indices: 10370654--10371195 Score: 741
Period size: 55 Copynumber: 9.9 Consensus size: 55
10370644 TATATGGTAG
* *
10370654 TTCATCAACTCATGATGAATTCCGTTGG--TTGCACATATCGTGCATT-TACGGTTA
1 TTCATCAACTCATGATGAATTCCG-TGGATTTGCACACATAGTGC-TTGTACGGTTA
* * *
10370708 TTCATCAACTCATGATGAATTTCGTGGATTTGCACACATAGTGCATGTATGGTTA
1 TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCTTGTACGGTTA
* * *
10370763 TTCACCAACTTATGATGAATTCTGTGGATTTGCACACATAGTGCTTGTACGGTTA
1 TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCTTGTACGGTTA
* * * *
10370818 TTCATCAACTCATGATGAATTCCGTAGATTTACACACATAGTGCCTGTATGGTTA
1 TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCTTGTACGGTTA
* * * ** *
10370873 TTCATCAACTCATGATAAATTCCATGGATTT-CACACATAGTGCCTAAACAGTTA
1 TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCTTGTACGGTTA
**
10370927 TTCATCAACTCATGATGAATTCCGTGGATTTGCACTTATAGTGCTTGTACGGTTA
1 TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCTTGTACGGTTA
* * * * *
10370982 TTCATCAACTCATGATGAATTCTGTGTATTTGTACACATAGTACCTGTACGGTTA
1 TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCTTGTACGGTTA
* *
10371037 TTCATCAACTCATGATGAATTTCGTGGATTTGCACACATAGTGCTTGTACAGTTA
1 TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCTTGTACGGTTA
* * * *
10371092 TTCATCAACTCATGATGAATTCCATGGATTTACACACATAGTGCATGTATGGTTA
1 TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCTTGTACGGTTA
* *
10371147 TTCATCAACTCATGATAAATTCCATGGATTTGCACACATAGTGCTTGTA
1 TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCTTGTA
10371196 GTACACTTAG
Statistics
Matches: 428, Mismatches: 56, Indels: 7
0.87 0.11 0.01
Matches are distributed among these distances:
53 3 0.01
54 72 0.17
55 353 0.82
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (55 bp):
TTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCTTGTACGGTTA
Found at i:10371033 original size:219 final size:219
Alignment explanation
Indices: 10370631--10371195 Score: 792
Period size: 219 Copynumber: 2.6 Consensus size: 219
10370621 TATTAAAATG
* * * * * * *
10370631 CACATATAGTACCTATATGG-TAGTTCATCAACTCATGATGAATTCCGTTGG-TTGCACATATCG
1 CACACATAGTGCCTGTATGGTTA-TTCATCAACTCATGATGAATTCC-ATGGATTTCACACATAG
* * * *
10370694 TGCATTTACGGTTATTCATCAACTCATGATGAATTTCGTGGATTTGCACACATAGTGCATGTATG
64 TGCATATACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCTTGTACG
* * *
10370759 GTTATTCACCAACTTATGATGAATTCTGTGGATTTGCACACATAGTGCTTGTACGGTTATTCATC
129 GTTATTCACCAACTCATGATGAATTCTGTGGATTTGCACACATAGTACCTGTACGGTTATTCATC
10370824 AACTCATGATGAATTCCGTAGATTTA
194 AACTCATGATGAATTCCGTAGATTTA
*
10370850 CACACATAGTGCCTGTATGGTTATTCATCAACTCATGATAAATTCCATGGATTTCACACATAGTG
1 CACACATAGTGCCTGTATGGTTATTCATCAACTCATGATGAATTCCATGGATTTCACACATAGTG
* * * **
10370915 CCTAAACAGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACTTATAGTGCTTGTACGGT
66 CATATACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCTTGTACGGT
* * *
10370980 TATTCATCAACTCATGATGAATTCTGTGTATTTGTACACATAGTACCTGTACGGTTATTCATCAA
131 TATTCACCAACTCATGATGAATTCTGTGGATTTGCACACATAGTACCTGTACGGTTATTCATCAA
* * *
10371045 CTCATGATGAATTTCGTGGATTTG
196 CTCATGATGAATTCCGTAGATTTA
* **
10371069 CACACATAGTGCTTGTACAGTTATTCATCAACTCATGATGAATTCCATGGATTTACACACATAGT
1 CACACATAGTGCCTGTATGGTTATTCATCAACTCATGATGAATTCCATGGATTT-CACACATAGT
* * * *
10371134 GCATGTATGGTTATTCATCAACTCATGATAAATTCCATGGATTTGCACACATAGTGCTTGTA
65 GCATATACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCTTGTA
10371196 GTACACTTAG
Statistics
Matches: 304, Mismatches: 39, Indels: 5
0.87 0.11 0.01
Matches are distributed among these distances:
218 3 0.01
219 236 0.78
220 65 0.21
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (219 bp):
CACACATAGTGCCTGTATGGTTATTCATCAACTCATGATGAATTCCATGGATTTCACACATAGTG
CATATACGGTTATTCATCAACTCATGATGAATTCCGTGGATTTGCACACATAGTGCTTGTACGGT
TATTCACCAACTCATGATGAATTCTGTGGATTTGCACACATAGTACCTGTACGGTTATTCATCAA
CTCATGATGAATTCCGTAGATTTA
Found at i:10374966 original size:21 final size:21
Alignment explanation
Indices: 10374940--10374991 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
10374930 AAACTCTTCA
*
10374940 TTCTTGTCCTTCTTATTATTT
1 TTCTTGTCCTTCTTATTATTC
*
10374961 TTCTTGTCCTTCTTCTTATTC
1 TTCTTGTCCTTCTTATTATTC
*
10374982 TTCTCGTCCT
1 TTCTTGTCCT
10374992 CTTCCTTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.06, C:0.27, G:0.06, T:0.62
Consensus pattern (21 bp):
TTCTTGTCCTTCTTATTATTC
Found at i:10376805 original size:19 final size:19
Alignment explanation
Indices: 10376777--10376813 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10376767 TCTTTCCTTC
*
10376777 AATATTTAAAAAATAAATA
1 AATATCTAAAAAATAAATA
*
10376796 AATATCTAAAATATAAAT
1 AATATCTAAAAAATAAAT
10376814 TAAACATATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (19 bp):
AATATCTAAAAAATAAATA
Found at i:10377956 original size:14 final size:13
Alignment explanation
Indices: 10377933--10377964 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
10377923 TGTTTTCCGG
10377933 TTTTTCTCTTCTT
1 TTTTTCTCTTCTT
10377946 TTTTTCTTCTTCTT
1 TTTTTC-TCTTCTT
10377960 TTTTT
1 TTTTT
10377965 TTGCAGGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTCTCTTCTT
Found at i:10378383 original size:3 final size:3
Alignment explanation
Indices: 10378375--10378428 Score: 81
Period size: 3 Copynumber: 17.7 Consensus size: 3
10378365 TATATTTATT
*
10378375 TAA TAA TAA TGA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
10378421 TAA AAA TA
1 TAA TAA TA
10378429 GTAAGAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:10378709 original size:76 final size:76
Alignment explanation
Indices: 10378583--10379518 Score: 1552
Period size: 76 Copynumber: 12.1 Consensus size: 76
10378573 GGTCTTATGA
*
10378583 ATGACCCTG-AGGGTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
1 ATGACCC-GAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTG
*
10378647 AAGGGCTTACAG
65 AAGGACTTACAG
*
10378659 ATGACCCGAAGGCTTTGAAAACATCAAAAAGTTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
10378724 AGGACTTACAG
66 AGGACTTACAG
10378735 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
10378800 AGGACTTACAG
66 AGGACTTACAG
10378811 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTTGGAAACATCATGCACTG
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGC-TTTTTGGAAACATCATGCACTG
10378876 AAGGACTTACAG
65 AAGGACTTACAG
10378888 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
10378953 AGGACTTACAG
66 AGGACTTACAG
* *
10378964 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGTTATTTTTTTTTTTTGAAACATCA
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGG---------CTTTTTG---G---A
10379029 TTTTTAACATCATGCACTGAAGGACTTACAG
51 -----AACATCATGCACTGAAGGACTTACAG
*
10379060 ATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
10379125 AGGACTTACAG
66 AGGACTTACAG
*
10379136 ATGACCCGAAGGCTTTGAAAACATCAAAAAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGA
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
10379201 AGGACTTACAG
66 AGGACTTACAG
* *
10379212 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAATATCATGCACTGT
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
10379277 AGGACTTACAG
66 AGGACTTACAG
* *
10379288 ATGACCCTAAGG-TTTGAAAACATCAAAAAGCTCCCAAAGGCTTTTTGGAAACATCATGCACTGA
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
10379352 AGGACTTACAG
66 AGGACTTACAG
*
10379363 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCAAAGGCTTTTTGGAAACATCATGCACTGA
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
10379428 AGGACTTACAG
66 AGGACTTACAG
10379439 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
1 ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
10379504 AGGACTTACAG
66 AGGACTTACAG
10379515 ATGA
1 ATGA
10379519 GGGAAATAGT
Statistics
Matches: 817, Mismatches: 20, Indels: 46
0.93 0.02 0.05
Matches are distributed among these distances:
75 72 0.09
76 589 0.72
77 76 0.09
81 1 0.00
85 6 0.01
87 6 0.01
91 1 0.00
96 66 0.08
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.23
Consensus pattern (76 bp):
ATGACCCGAAGGCTTTGAAAACATCAAAAAGCTCCCGAAGGCTTTTTGGAAACATCATGCACTGA
AGGACTTACAG
Found at i:10379334 original size:227 final size:228
Alignment explanation
Indices: 10379034--10379518 Score: 918
Period size: 227 Copynumber: 2.1 Consensus size: 228
10379024 CATCATTTTT
*
10379034 AACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCGAA
1 AACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCAAA
10379099 GGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAA
66 GGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAA
*
10379164 AAGATCCCGAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTG
131 AAGATCCCAAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTG
10379229 AAAACATCAAAAAGCTCCCGAAGGCTTTTTGGA
196 AAAACATCAAAAAGCTCCCGAAGGCTTTTTGGA
* *
10379262 AATATCATGCACTGTAGGACTTACAGATGACCCTAAGG-TTTGAAAACATCAAAAAGCTCCCAAA
1 AACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCAAA
10379326 GGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAA
66 GGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAA
*
10379391 AAGCTCCCAAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTG
131 AAGATCCCAAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTG
10379456 AAAACATCAAAAAGCTCCCGAAGGCTTTTTGGA
196 AAAACATCAAAAAGCTCCCGAAGGCTTTTTGGA
10379489 AACATCATGCACTGAAGGACTTACAGATGA
1 AACATCATGCACTGAAGGACTTACAGATGA
10379519 GGGAAATAGT
Statistics
Matches: 250, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
227 214 0.86
228 36 0.14
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (228 bp):
AACATCATGCACTGAAGGACTTACAGATGACCCTAAGGCTTTGAAAACATCAAAAAGCTCCCAAA
GGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTGAAAACATCAAA
AAGATCCCAAAGGCTTTTTGGAAACATCATGCACTGAAGGACTTACAGATGACCCGAAGGCTTTG
AAAACATCAAAAAGCTCCCGAAGGCTTTTTGGA
Found at i:10380212 original size:22 final size:23
Alignment explanation
Indices: 10380187--10380241 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 23
10380177 AATAAAGCTT
*
10380187 TCATCTTTGAAAAGA-GAATCTA
1 TCATCTTTGAAAAAAGGAATCTA
*
10380209 TCATCTTT-AAAAAAGGAGTCTA
1 TCATCTTTGAAAAAAGGAATCTA
10380231 TCATCTTTGAA
1 TCATCTTTGAA
10380242 GAGTGTAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 5 0.17
22 22 0.76
23 2 0.07
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.35
Consensus pattern (23 bp):
TCATCTTTGAAAAAAGGAATCTA
Found at i:10382658 original size:93 final size:93
Alignment explanation
Indices: 10382499--10382689 Score: 287
Period size: 93 Copynumber: 2.1 Consensus size: 93
10382489 CTTATTTCTA
* * *
10382499 CTATGAGCAAAATTCATCTTTCAAATCCAATGATTGATTTTGGAGTTCATACCAAATCATATCAG
1 CTATGAGCAAAATTCATCTTCCAAATCCAATGATTGATTTTGGAGTTCATACCAAACCAGATCAG
10382564 ATAACTCAAAGAACACCTCCAGAAGATG
66 ATAACTCAAAGAACACCTCCAGAAGATG
* * *
10382592 CTATGAGC-ACATTCATCTTCCAAATTCAATGATTGATTCTGTGG-TTTCATACCAAACCAGATC
1 CTATGAGCAAAATTCATCTTCCAAATCCAATGATTGATT-T-TGGAGTTCATACCAAACCAGATC
*
10382655 AGATAACTCAAAGAACACTTCCAGAAGATG
64 AGATAACTCAAAGAACACCTCCAGAAGATG
10382685 CTATG
1 CTATG
10382690 GGTCTCCTTA
Statistics
Matches: 89, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
92 27 0.30
93 59 0.66
94 3 0.03
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (93 bp):
CTATGAGCAAAATTCATCTTCCAAATCCAATGATTGATTTTGGAGTTCATACCAAACCAGATCAG
ATAACTCAAAGAACACCTCCAGAAGATG
Found at i:10385031 original size:23 final size:23
Alignment explanation
Indices: 10384996--10385060 Score: 62
Period size: 23 Copynumber: 2.8 Consensus size: 23
10384986 CTTGATTCAA
* * *
10384996 TTTTCCTTCTTCTTTTTCCTTTT
1 TTTTCTTTTTTCTTTTTCATTTT
10385019 TGTTT-TTTTTTCTTTATT-ATTTT
1 T-TTTCTTTTTTCTTT-TTCATTTT
10385042 TTTTCTTTTTTCTCTTTTC
1 TTTTCTTTTTTCT-TTTTC
10385061 TCTTCTTTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
22 3 0.09
23 24 0.71
24 7 0.21
ACGTcount: A:0.03, C:0.17, G:0.02, T:0.78
Consensus pattern (23 bp):
TTTTCTTTTTTCTTTTTCATTTT
Found at i:10385059 original size:16 final size:16
Alignment explanation
Indices: 10385008--10385072 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 16
10384998 TTCCTTCTTC
10385008 TTTTTC-CTTTTTGT-T
1 TTTTTCTCTTTTT-TCT
* * *
10385023 TTTTTTTCTTTATTAT
1 TTTTTCTCTTTTTTCT
*
10385039 TTTTTTTCTTTTTTCT
1 TTTTTCTCTTTTTTCT
* *
10385055 CTTTTCTCTTCTTTCT
1 TTTTTCTCTTTTTTCT
10385071 TT
1 TT
10385073 GCTGGATGAG
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
15 6 0.15
16 34 0.85
ACGTcount: A:0.03, C:0.15, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTTCTCTTTTTTCT
Found at i:10389758 original size:24 final size:24
Alignment explanation
Indices: 10389727--10389801 Score: 73
Period size: 24 Copynumber: 3.1 Consensus size: 24
10389717 ATAAAATGAA
10389727 ATAT-AAATAATATATATAAATACT
1 ATATAAAATAATATATATAAATA-T
* *
10389751 ATA-AAAATAATATGTATATATAT
1 ATATAAAATAATATATATAAATAT
* *
10389774 ATATAAAAGAATTATAAATTAAATAT
1 ATATAAAATAA-TATATA-TAAATAT
10389800 AT
1 AT
10389802 GAATTTTTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
23 4 0.10
24 25 0.61
25 4 0.10
26 8 0.20
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.37
Consensus pattern (24 bp):
ATATAAAATAATATATATAAATAT
Found at i:10390480 original size:19 final size:19
Alignment explanation
Indices: 10390452--10390488 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10390442 TCTTTCCTTC
*
10390452 AATATTTAAAAAATAAATA
1 AATATCTAAAAAATAAATA
*
10390471 AATATCTAAAATATAAAT
1 AATATCTAAAAAATAAAT
10390489 TAAACATATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (19 bp):
AATATCTAAAAAATAAATA
Found at i:10391285 original size:20 final size:20
Alignment explanation
Indices: 10391260--10391304 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
10391250 GATCGCCACC
10391260 GCCGGCCACCGCTCACGGTG
1 GCCGGCCACCGCTCACGGTG
10391280 GCCGGCCACCGCTCACGGTG
1 GCCGGCCACCGCTCACGGTG
10391300 GCCGG
1 GCCGG
10391305 AACTCCTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.09, C:0.44, G:0.38, T:0.09
Consensus pattern (20 bp):
GCCGGCCACCGCTCACGGTG
Found at i:10391650 original size:11 final size:11
Alignment explanation
Indices: 10391629--10391658 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
10391619 TGTTTTCCGA
10391629 TTTTTTCTCTTC
1 TTTTTT-TCTTC
10391641 TTTTTTTCTTC
1 TTTTTTTCTTC
10391652 TTTTTTT
1 TTTTTTT
10391659 TTTTTTTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.67
12 6 0.33
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTTTCTTC
Found at i:10392059 original size:2 final size:2
Alignment explanation
Indices: 10392052--10392076 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10392042 TGGGCCTTTG
10392052 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10392077 TTATTTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10392090 original size:3 final size:3
Alignment explanation
Indices: 10392082--10392126 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
10392072 TATATTTATT
* * *
10392082 TAA TAA TAA TGA TATA TAA TAA TAA AAA TAA TAA TAA TAA AAA TA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
10392127 GTAAGAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:10392117 original size:15 final size:15
Alignment explanation
Indices: 10392082--10392139 Score: 64
Period size: 15 Copynumber: 3.9 Consensus size: 15
10392072 TATATTTATT
**
10392082 TAATAATAATGATATA
1 TAATAATAAAAATA-A
10392098 TAATAATAAAAATAA
1 TAATAATAAAAATAA
*
10392113 TAATAATAAAAATAG
1 TAATAATAAAAATAA
*
10392128 TAAGAA-AAAAAT
1 TAATAATAAAAAT
10392140 TATTGTTTAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
14 6 0.16
15 20 0.53
16 12 0.32
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (15 bp):
TAATAATAAAAATAA
Found at i:10394273 original size:24 final size:24
Alignment explanation
Indices: 10394245--10394420 Score: 343
Period size: 24 Copynumber: 7.3 Consensus size: 24
10394235 AAAGTACATA
*
10394245 ACTTAAATTAAAAATAATTTAAAT
1 ACTTAAATTAAGAATAATTTAAAT
10394269 ACTTAAATTAAGAATAATTTAAAT
1 ACTTAAATTAAGAATAATTTAAAT
10394293 ACTTAAATTAAGAATAATTTAAAT
1 ACTTAAATTAAGAATAATTTAAAT
10394317 ACTTAAATTAAGAATAATTTAAAT
1 ACTTAAATTAAGAATAATTTAAAT
10394341 ACTTAAATTAAGAATAATTTAAAT
1 ACTTAAATTAAGAATAATTTAAAT
10394365 ACTTAAATTAAGAATAATTTAAAT
1 ACTTAAATTAAGAATAATTTAAAT
10394389 ACTTAAATTAAGAATAATTTAAAT
1 ACTTAAATTAAGAATAATTTAAAT
10394413 ACTTAAAT
1 ACTTAAAT
10394421 AATTAAATAT
Statistics
Matches: 151, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
24 151 1.00
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (24 bp):
ACTTAAATTAAGAATAATTTAAAT
Done.