Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007999.1 Hibiscus syriacus cultivar Beakdansim tig00110450_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11700749
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 44 of 50
Found at i:10397193 original size:3 final size:3
Alignment explanation
Indices: 10397185--10397263 Score: 142
Period size: 3 Copynumber: 26.3 Consensus size: 3
10397175 AAAGAAAAAC
10397185 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATAA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
10397231 ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
10397264 CAGCAACAAC
Statistics
Matches: 74, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.03
3 69 0.93
4 3 0.04
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10397869 original size:23 final size:23
Alignment explanation
Indices: 10397822--10397871 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
10397812 AATAACATAT
**
10397822 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATAAAA
10397845 TAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCGCTTATATAATAAAA
10397868 TAGG
1 TAGG
10397872 CATTTAACCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATAAAA
Found at i:10397946 original size:87 final size:87
Alignment explanation
Indices: 10397785--10397947 Score: 290
Period size: 87 Copynumber: 1.9 Consensus size: 87
10397775 TATGCTATAT
10397785 CATTTAACCAGAAATATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCAGAAATATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
**
10397850 AGCGCTTATATAATAAAATAGG
66 AGCAATTATATAATAAAATAGG
* *
10397872 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCAGAAATATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
10397937 AGCAATTATAT
66 AGCAATTATAT
10397948 TGACCTATTT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
87 72 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (87 bp):
CATTTAACCAGAAATATTATCAAGCACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
AGCAATTATATAATAAAATAGG
Found at i:10398654 original size:182 final size:182
Alignment explanation
Indices: 10398329--10398657 Score: 529
Period size: 182 Copynumber: 1.8 Consensus size: 182
10398319 TGTTGACTTA
* *
10398329 TTTTCTCATATTTTTAGCTGTTATATTGTTATCGATCGATACATTTTCATAAAGTGTCGACACTT
1 TTTTCTCATATTTTTACCTGTTATATTGTTATCGATCGATACATTTTCATAAAGTATCGACACTT
*
10398394 TTTAACGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTTGATACTTATATTAAATTATCGAC
66 TTTAACGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGAC
*
10398459 ACTTTCAAACATATCCGATATCCTTTTACCGGTATTTTTATTTTGAGACCGG
131 ACTTGCAAACATATCCGATATCCTTTTACCGGTATTTTTATTTTGAGACCGG
* * * *
10398511 TTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATGCATTTT-TTAAAAGTATCGACACT
1 TTTTCTCATATTTTTACCTGTTATATTGTTATCGATCGATACATTTTCAT-AAAGTATCGACACT
*
10398575 TTTT-AGGTACTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATC
65 TTTTAACG--CTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATC
10398639 GACACTTGC-AACATATCCG
128 GACACTTGCAAACATATCCG
10398658 GTAGCGTTTT
Statistics
Matches: 135, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
181 3 0.02
182 70 0.52
183 62 0.46
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (182 bp):
TTTTCTCATATTTTTACCTGTTATATTGTTATCGATCGATACATTTTCATAAAGTATCGACACTT
TTTAACGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCGAC
ACTTGCAAACATATCCGATATCCTTTTACCGGTATTTTTATTTTGAGACCGG
Found at i:10398690 original size:162 final size:162
Alignment explanation
Indices: 10398510--10398843 Score: 535
Period size: 162 Copynumber: 2.1 Consensus size: 162
10398500 TTTGAGACCG
* * * *
10398510 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATGCATTTT-TTAAAAGTATCGACAC
1 GTTTTGTCATATTTTTACCTGTTATATTGTTATAGATCAATACATTTTCAT-AAAGTATCGACAC
* *
10398574 TTTTTAGGTACTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATC
65 TTTTTAAGCACTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATC
* *
10398639 GACACTTGCAACATATCCGGTAGCGTTTTACCA
130 GACACTTACAACAAATCCGGTAGCGTTTTACCA
*
10398672 GTTTTGTCATATTTTTACCTGTTATATTGTTATAGATCAATACATTTTCATAAAGTGTCGACACT
1 GTTTTGTCATATTTTTACCTGTTATATTGTTATAGATCAATACATTTTCATAAAGTATCGACACT
*
10398737 TTTTAAGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCG
66 TTTTAAGCACTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCG
** *
10398802 ACACTTACAACAAATCCGGTATTGTTTTACCG
131 ACACTTACAACAAATCCGGTAGCGTTTTACCA
10398834 GTTTTGTCAT
1 GTTTTGTCAT
10398844 TTTGAGACTG
Statistics
Matches: 158, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
162 157 0.99
163 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (162 bp):
GTTTTGTCATATTTTTACCTGTTATATTGTTATAGATCAATACATTTTCATAAAGTATCGACACT
TTTTAAGCACTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTATATTAAATTATCG
ACACTTACAACAAATCCGGTAGCGTTTTACCA
Found at i:10402834 original size:199 final size:200
Alignment explanation
Indices: 10402547--10403493 Score: 1073
Period size: 199 Copynumber: 4.8 Consensus size: 200
10402537 CTATTTACAC
* * * * * * * *
10402547 CGGTAAATTTAAATCGGTTACATTGTAAATTGACCTATTACATTATAATT-TCTGGTCTCAATGT
1 CGGTATATTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAATTAT-GGGTTTCGATGT
* * * * * * * * *
10402611 ATTTGGGGTCGATACTTTTTATAAATGTATCGAAACTTTATGCGTGGACATCGG-TTGGCATTA-
65 TTTTGGGATCGACACTTATTATAAATGTATCGACACTTTAT-CGTGGACATTGGTTTTGAAATAC
* * *** * * *** * * * * * *
10402674 ATTATGGA-CATACGTATCGACACAAATGTAAAAAGTATCGATACATTATGTATACATATTTGCT
129 ATTATGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACATGTTTTCT
10402738 CATAAAA
194 CATAAAA
**
10402745 CAGGTATATTTAGACCGGTTACATTGTTAATTTACCTATTACATTAT-ATCTATGTATTTCGATG
1 C-GGTATATTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAAT-TATGGGTTTCGATG
* * * *
10402809 TTTTTAGTATCGACACTTATTATAAATGTATCGACACGTT-TCAGTGCA-ATTGGTTTTGAAATA
64 TTTTTGGGATCGACACTTATTATAAATGTATCGACACTTTATC-GTGGACATTGGTTTTGAAATA
10402872 CATTATGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACATGTTTTC
128 CATTATGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACATGTTTTC
*
10402937 TCATAAAC
193 TCATAAAA
***
10402945 CGGTATATTTAGACTAATTACATTGTTAATTTACCTATTAC-TTCATAATTATGGGTTTCGATGT
1 CGGTATATTTAGACCGGTTACATTGTTAATTTACCTATTACATT-ATAATTATGGGTTTCGATGT
*
10403009 TTTTGGGATCGACACTTATTATAAATGTATCGACACGTTTA--GT-G-CATTTGGTTTTAAAATA
65 TTTTGGGATCGACACTTATTATAAATGTATCGACAC-TTTATCGTGGACA-TTGGTTTTGAAATA
* *
10403070 CATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTC
128 CATTATGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACATGTTTTC
10403135 TCA-AAAA
193 TCATAAAA
* * *
10403142 TCGGTATACTTAGACCGGTTACATTGTTAATTTATCTAGTACATTATAATTATGGGTTTCGATGT
1 -CGGTATATTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGT
* * *
10403207 TTTTGGGATCGACACTTATTATAAATGTATCGACACTTTTTAGTGCAC-TTGGTTTTGAAATACA
65 TTTTGGGATCGACACTTATTATAAATGTATCGACACTTTATCGTGGACATTGGTTTTGAAATACA
* * *
10403271 TTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTATACACCTGTTTTCTC
130 TTATGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACATGTTTTCTC
10403336 A-AAAA
195 ATAAAA
* * * * *
10403341 CCGGTATACTTAGACCGGTTAAATTGTTAATTTACCTATTACATCATAATTATGGGTTTCGTTAT
1 -CGGTATATTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGT
* * * * *
10403406 TTTTGGGATCGACACTTATTATAAATGTATCAACATTTTTTTCGTGCAC-TTGGTTTGGAAATAC
65 TTTTGGGATCGACACTTATTATAAATGTATCGACA-CTTTATCGTGGACATTGGTTTTGAAATAC
*
10403470 ATTATGGA-CAATATGTATCGACAC
129 ATTATGGACCAA-AAGTATCGACAC
10403494 GAATGAATAA
Statistics
Matches: 652, Mismatches: 76, Indels: 40
0.85 0.10 0.05
Matches are distributed among these distances:
197 12 0.02
198 188 0.29
199 356 0.55
200 95 0.15
201 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (200 bp):
CGGTATATTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGATGTT
TTTGGGATCGACACTTATTATAAATGTATCGACACTTTATCGTGGACATTGGTTTTGAAATACAT
TATGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACATGTTTTCTCA
TAAAA
Found at i:10403149 original size:198 final size:198
Alignment explanation
Indices: 10402736--10403493 Score: 1126
Period size: 199 Copynumber: 3.8 Consensus size: 198
10402726 TACATATTTG
* * *
10402736 CTCATAAAACAGGTATATTTAGACCGGTTACATTGTTAATTTACCTATTACATTAT-ATCTATGT
1 CTCA-AAAACCGGTATACTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAAT-TATGG
* * *
10402800 ATTTCGATGTTTTTAGTATCGACACTTATTATAAATGTATCGACACGTTTCAGTGCAATTGGTTT
64 GTTTCGATGTTTTTGGGATCGACACTTATTATAAATGTATCGACACGTTT-AGTGCAATTGGTTT
* *
10402865 TGAAATACATTATGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACA
128 TGAAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACC
10402930 TGTTTT
193 TGTTTT
* * ***
10402936 CTCATAAACCGGTATATTTAGACTAATTACATTGTTAATTTACCTATTAC-TTCATAATTATGGG
1 CTCAAAAACCGGTATACTTAGACCGGTTACATTGTTAATTTACCTATTACATT-ATAATTATGGG
* *
10403000 TTTCGATGTTTTTGGGATCGACACTTATTATAAATGTATCGACACGTTTAGTGCATTTGGTTTTA
65 TTTCGATGTTTTTGGGATCGACACTTATTATAAATGTATCGACACGTTTAGTGCAATTGGTTTTG
10403065 AAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTG
130 AAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTG
10403130 TTTT
195 TTTT
* * *
10403134 CTCAAAAATCGGTATACTTAGACCGGTTACATTGTTAATTTATCTAGTACATTATAATTATGGGT
1 CTCAAAAACCGGTATACTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGT
* *
10403199 TTCGATGTTTTTGGGATCGACACTTATTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTG
66 TTCGATGTTTTTGGGATCGACACTTATTATAAATGTATCGACAC-GTTTAGTGCAATTGGTTTTG
*
10403264 AAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTATACACCTG
130 AAATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTG
10403329 TTTT
195 TTTT
* *
10403333 CTCAAAAACCGGTATACTTAGACCGGTTAAATTGTTAATTTACCTATTACATCATAATTATGGGT
1 CTCAAAAACCGGTATACTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGT
* * * ** * * *
10403398 TTCGTTATTTTTGGGATCGACACTTATTATAAATGTATCAACATTTTTTTCGTGCACTTGGTTTG
66 TTCGATGTTTTTGGGATCGACACTTATTATAAATGTATCGACA--CGTTTAGTGCAATTGGTTTT
* *
10403463 GAAATACATTATGGA-CAATATGTATCGACAC
129 GAAATACATTCTGGACCAA-AAGTATCGACAC
10403494 GAATGAATAA
Statistics
Matches: 513, Mismatches: 38, Indels: 14
0.91 0.07 0.02
Matches are distributed among these distances:
198 181 0.35
199 284 0.55
200 48 0.09
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.41
Consensus pattern (198 bp):
CTCAAAAACCGGTATACTTAGACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGT
TTCGATGTTTTTGGGATCGACACTTATTATAAATGTATCGACACGTTTAGTGCAATTGGTTTTGA
AATACATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGT
TTT
Found at i:10403701 original size:24 final size:24
Alignment explanation
Indices: 10403674--10403730 Score: 78
Period size: 24 Copynumber: 2.3 Consensus size: 24
10403664 TAAAATTTAC
10403674 ATTTAAATTCAAACTCAAACTCAA
1 ATTTAAATTCAAACTCAAACTCAA
* * *
10403698 ATTTAAATTTAAATTCAAACTCTA
1 ATTTAAATTCAAACTCAAACTCAA
10403722 ATTATAAAT
1 ATT-TAAAT
10403731 GAAATGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 24 0.83
25 5 0.17
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (24 bp):
ATTTAAATTCAAACTCAAACTCAA
Found at i:10406170 original size:15 final size:15
Alignment explanation
Indices: 10406150--10406193 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
10406140 AGGAGGTTGT
10406150 GGTTGGGAAGAGCTG
1 GGTTGGGAAGAGCTG
*
10406165 GGTTGGGAAGAGGTG
1 GGTTGGGAAGAGCTG
*
10406180 GGTTGAGAAGAGCT
1 GGTTGGGAAGAGCT
10406194 TTGAGAAAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.23, C:0.05, G:0.52, T:0.20
Consensus pattern (15 bp):
GGTTGGGAAGAGCTG
Found at i:10406880 original size:199 final size:199
Alignment explanation
Indices: 10406540--10407836 Score: 2209
Period size: 199 Copynumber: 6.5 Consensus size: 199
10406530 TTTTCAAATT
** * *
10406540 AAACCGGTATTTTTATACCGGTTACATTGTTAATTTACCTATTACATTATAATTATGGGTTTCGA
1 AAACCGGTATACTTAGACCGGTTACATTGTTAATTTACCTAGTACATTATAATTATGGGTTTCGA
*
10406605 TGTTTTTGGGATCGACACTTATTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGGAATA
66 TGTTTTTGGGATCGACACTTATTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* *
10406670 CATTTTGGACCAAAAGTATTGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTC
131 CATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTC
*
10406735 TCAT
196 TCAA
* * *
10406739 AAACCGGTATAATTAGACTGGTTACATTGTTAATTTACCTAGTACATTATAATTGTGGGTTTCGA
1 AAACCGGTATACTTAGACCGGTTACATTGTTAATTTACCTAGTACATTATAATTATGGGTTTCGA
*
10406804 TGTTTTTGGGATCGACACTTATTATAAATGTATCGACACTTTTTAGTGAACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTATTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* *
10406869 CATTCTGGACC-AAAGTATCGACACTTTTTTTATTCGTGTCGATACTTTTTGTACACCTGTTTTC
131 CATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTC
10406933 TCAA
196 TCAA
*
10406937 AAATCGGTATACTTAGACCGGTTACATTGTTAATTTACCTAGTACATTATAATTATGGGTTTCGA
1 AAACCGGTATACTTAGACCGGTTACATTGTTAATTTACCTAGTACATTATAATTATGGGTTTCGA
*
10407002 TGTTTTTGGGATCGACACTTATTATAAATATATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTATTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
**
10407067 CATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACATATGTTTTC
131 CATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTC
10407132 TCAA
196 TCAA
* * *
10407136 AAACCGGTATACTTAGACCGGTTAAATTGTTAATTTACCTATTACATCATAATTATGGGTTTCGA
1 AAACCGGTATACTTAGACCGGTTACATTGTTAATTTACCTAGTACATTATAATTATGGGTTTCGA
* * *
10407201 TGTTTTTGGGATCGACACTTCTTATAAATGTATCGACACTTTTTAATGAACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTATTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* *
10407266 CATTATGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTATTTTC
131 CATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTC
10407331 TCAA
196 TCAA
* *
10407335 AAACCGATATACTTAAACCGGTTACATTGTTAATTTACCTAGTACATTATAATTATGGGTTTCGA
1 AAACCGGTATACTTAGACCGGTTACATTGTTAATTTACCTAGTACATTATAATTATGGGTTTCGA
* * *
10407400 TGTTTTTGGGATCAACACTTATTATAAATGTATCGAAACTTTTTAGTGCACATGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTATTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
*
10407465 CATTTTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTC
131 CATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTC
10407530 TCAA
196 TCAA
10407534 AAACCGGTATACTTAGACCGGTTACATTGTTAATTTACCTAGTACATTATAATTATGGGTTTCGA
1 AAACCGGTATACTTAGACCGGTTACATTGTTAATTTACCTAGTACATTATAATTATGGGTTTCGA
* *
10407599 TATTTTTGGGATCCACACTTATTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
66 TGTTTTTGGGATCGACACTTATTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
* *
10407664 CATTCTGGACCAAAAGTATCGACACTTTTTTTATTTGTGTCGATACTTTTTGTACAACTGTTTTC
131 CATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTC
10407729 TCAA
196 TCAA
* * * * * *
10407733 AAATCGGTATACTTATACCGGTTAAATTGTTAATTTACCTATTACATCAAAATTATGGGTTTCGA
1 AAACCGGTATACTTAGACCGGTTACATTGTTAATTTACCTAGTACATTATAATTATGGGTTTCGA
10407798 TGTTTTTGGGATCGACACTTATTATAAATGTATCGACAC
66 TGTTTTTGGGATCGACACTTATTATAAATGTATCGACAC
10407837 ATAAGTTTAC
Statistics
Matches: 1032, Mismatches: 65, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
198 188 0.18
199 844 0.82
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (199 bp):
AAACCGGTATACTTAGACCGGTTACATTGTTAATTTACCTAGTACATTATAATTATGGGTTTCGA
TGTTTTTGGGATCGACACTTATTATAAATGTATCGACACTTTTTAGTGCACTTGGTTTTGAAATA
CATTCTGGACCAAAAGTATCGACACTTGTTTTATTTGTGTCGATACTTTTTGTACACCTGTTTTC
TCAA
Found at i:10408231 original size:19 final size:19
Alignment explanation
Indices: 10408207--10408254 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
10408197 TTACATTCGC
*
10408207 ATACAAAATTATAAATCGT
1 ATACAAAATTAAAAATCGT
*
10408226 ATACAAAATTAAAAATCTT
1 ATACAAAATTAAAAATCGT
10408245 ATACAAAATT
1 ATACAAAATT
10408255 TACCCTACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.31
Consensus pattern (19 bp):
ATACAAAATTAAAAATCGT
Found at i:10410412 original size:22 final size:21
Alignment explanation
Indices: 10410384--10410440 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 21
10410374 AACCTGTATT
*
10410384 TATAATAAAAGTTATCATTTTA
1 TATAATAAAA-CTATCATTTTA
10410406 TATAATAACTATACTATCATTTTA
1 TATAATAA--A-ACTATCATTTTA
*
10410430 TATAAAAAAAC
1 TATAATAAAAC
10410441 ATTCTTCAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
21 2 0.07
22 9 0.30
24 18 0.60
25 1 0.03
ACGTcount: A:0.49, C:0.09, G:0.02, T:0.40
Consensus pattern (21 bp):
TATAATAAAACTATCATTTTA
Found at i:10411703 original size:19 final size:19
Alignment explanation
Indices: 10411679--10411734 Score: 87
Period size: 19 Copynumber: 3.0 Consensus size: 19
10411669 CACATTTATA
*
10411679 CAACCTAAAATATCATTTT
1 CAACCTATAATATCATTTT
10411698 CAACCTATAATATCATTTT
1 CAACCTATAATATCATTTT
*
10411717 -TACCTATAATATCATTTT
1 CAACCTATAATATCATTTT
10411735 TACATATAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
18 17 0.49
19 18 0.51
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.43
Consensus pattern (19 bp):
CAACCTATAATATCATTTT
Found at i:10411735 original size:19 final size:18
Alignment explanation
Indices: 10411681--10411746 Score: 96
Period size: 18 Copynumber: 3.6 Consensus size: 18
10411671 CATTTATACA
* *
10411681 ACCTAAAATATCATTTTCA
1 ACCTATAATATCATTTT-T
10411700 ACCTATAATATCATTTTT
1 ACCTATAATATCATTTTT
10411718 ACCTATAATATCATTTTT
1 ACCTATAATATCATTTTT
*
10411736 ACATATAATAT
1 ACCTATAATAT
10411747 TAAAAAAAGT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
18 28 0.64
19 16 0.36
ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44
Consensus pattern (18 bp):
ACCTATAATATCATTTTT
Found at i:10412443 original size:182 final size:182
Alignment explanation
Indices: 10412133--10413643 Score: 2119
Period size: 182 Copynumber: 8.3 Consensus size: 182
10412123 TGCGTGTACT
*** * * *
10412133 TATTAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCAGTTTTGTCATTTTTAGACCT
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCG
* *
10412198 GTTTTGTCCTATTTTTACCTCTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACACT
66 GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACACT
* *
10412263 TTGTAGGTGCTATAACTTCTTCTCTTTTAAATTCCA-AAAGTGTCGATACTTA
131 TTATAGGCGCTATAACTTCTTCTCTTTTAAATT-CAGAAAGTGTCGATACTTA
10412315 TATTAAAGTATCGACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCG
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCG
* *
10412380 GTTTTGTCATA-TTTTAGGCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTGTCGACAC
66 GTTTTGTCATATTTTTA-CCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACAC
10412444 GTTT-TAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
130 -TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* * * * * *
10412497 TATTAAATTATCGATACTTTCAATATATCCGGTA-TCGT-TTTACCGGTTTTATCATTTTTTAGA
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGT--TATTTACCTGTTTTGTCA-TTTTGAGA
* *
10412560 CCTGTTTTGTCCTATTTTTACCTGTTATATTGTTATGGATCGATACA-TTTTTTAAAGTATCGAC
63 CCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGAC
* * * *
10412624 ACTTTATAGGCGCTACAACTTCTTCTTTTTTAAATTCCA-AAAGTGGCAATACTTA
128 ACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATT-CAGAAAGTGTCGATACTTA
*
10412679 TATTAAAGTATCGACACTTTCAACATATCCGGTAATTATTTACCTGTTTTGTCATTTTGAGACCG
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCG
* *
10412744 GTTTTGTCATA-TTTTAGGCTGTTATATTGTTATGGATCGATACA-TTTTTTAAAGTGTCGACAC
66 GTTTTGTCATATTTTTA-CCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACAC
*
10412807 GTTT-TAGGCGCTATAACTTCTTCTCTTTTAAATTTAGAAAGTGTCGATACTTA
130 -TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* * * *
10412860 TATTAAATTATCGACACTTTCAATATATCCGGTA-TCGT-TTTACCGGTTTTGTCATTTTTTAGA
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGT--TATTTACCTGTTTTGTCA-TTTTGAGA
* * *
10412923 CCTGTTTTGTCTTATTTTTACCTGTTATATTGTTATGGATCTATACATTTTTTTAAAGTATCGAC
63 CCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGAC
10412988 ACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCA-AAAGTGTCGATACTTA
128 ACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATT-CAGAAAGTGTCGATACTTA
10413043 TATTAAAGTATCGACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCG
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCG
* *
10413108 GTTTTGTCATA-TTTTAGGCTGTTATATTGTTATGGATCGATACA-TTTTTTAAAGTGTCGACA-
66 GTTTTGTCATATTTTTA-CCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACAC
*
10413170 TGTTTTAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
130 T-TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* * * * * *
10413224 TATTAAATTATCGAAACTTTCAATATATTCGGTA-TCGT-TTTACCGGTTTTGTCATTTTTTAGA
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGT--TATTTACCTGTTTTGTCA-TTTTGAGA
** *
10413287 CCTTTTTTGTCCTATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGAC
63 CCGGTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGAC
*
10413352 ACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCA-AAAGTGTAGATACTTA
128 ACTTTATAGGCGCTATAACTTCTTCTCTTTTAAATT-CAGAAAGTGTCGATACTTA
*
10413407 TATTAAAGTATCGACACTTTCAACATATCCGATAGTTATTTACCTGTTTTGTCATTTTGAGACCG
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCG
* ** * *** *
10413472 ATTTTGTCATA-TTTTAGGTTGTTATATTGTTATGGATTGATACATTTGCATAAAGTGTCGACA-
66 GTTTTGTCATATTTTTA-CCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACAC
* *
10413535 TGTTTTAGGCGCTATAACTTCTTTTCTTTTAAATTCAGAAAGTGTCGATACTTA
130 T-TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* ***
10413589 TATTAAATTATCGACACTTTCAACATATCCGGTAGCGCTTTACCTGTTTTGTCAT
1 TATTAAAGTATCGACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCAT
10413644 ATTTTTACCT
Statistics
Matches: 1193, Mismatches: 98, Indels: 76
0.87 0.07 0.06
Matches are distributed among these distances:
180 11 0.01
181 287 0.24
182 603 0.51
183 281 0.24
184 11 0.01
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (182 bp):
TATTAAAGTATCGACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCG
GTTTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACACT
TTATAGGCGCTATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
Found at i:10412947 original size:20 final size:20
Alignment explanation
Indices: 10412897--10412948 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
10412887 TCCGGTATCG
*
10412897 TTTTACCGGTTTTGTCATTT
1 TTTTACCTGTTTTGTCATTT
*
10412917 TTTAGACCTGTTTTGTC-TTAT
1 TTT-TACCTGTTTTGTCATT-T
10412938 TTTTACCTGTT
1 TTTTACCTGTT
10412949 ATATTGTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 12 0.44
21 15 0.56
ACGTcount: A:0.12, C:0.15, G:0.13, T:0.60
Consensus pattern (20 bp):
TTTTACCTGTTTTGTCATTT
Found at i:10412977 original size:364 final size:364
Alignment explanation
Indices: 10412133--10413650 Score: 2646
Period size: 364 Copynumber: 4.2 Consensus size: 364
10412123 TGCGTGTACT
* * * * *
10412133 TATTAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCAGTTTTGTCA-TTTTTAGACC
1 TATTAAATTATCGACACTTTCAATATATCCGGTATCGTTTTACCGGTTTTGTCATTTTTTAGACC
*
10412197 TGTTTTGTCCTATTTTTACCTCTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACAC
66 TGTTTTGTCCTATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACAC
* * * *
10412262 TTTGTAGGTGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAAGTATC
131 TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGGCAATACTTATATTAAAGTATC
10412327 GACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCGGTTTTGTCATAT
196 GACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCGGTTTTGTCATAT
10412392 TTTAGGCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTGTCGACACGTTTTAGGCGCTA
261 TTTAGGCTGTTATATTGTTATGGATCGATACA-TTTTTTAAAGTGTCGACACGTTTTAGGCGCTA
10412457 TAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
325 TAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* *
10412497 TATTAAATTATCGATACTTTCAATATATCCGGTATCGTTTTACCGGTTTTATCATTTTTTAGACC
1 TATTAAATTATCGACACTTTCAATATATCCGGTATCGTTTTACCGGTTTTGTCATTTTTTAGACC
10412562 TGTTTTGTCCTATTTTTACCTGTTATATTGTTATGGATCGATACA-TTTTTTAAAGTATCGACAC
66 TGTTTTGTCCTATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACAC
* *
10412626 TTTATAGGCGCTACAACTTCTTCTTTTTTAAATTCCAAAAGTGGCAATACTTATATTAAAGTATC
131 TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGGCAATACTTATATTAAAGTATC
*
10412691 GACACTTTCAACATATCCGGTAATTATTTACCTGTTTTGTCATTTTGAGACCGGTTTTGTCATAT
196 GACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCGGTTTTGTCATAT
10412756 TTTAGGCTGTTATATTGTTATGGATCGATACATTTTTTAAAGTGTCGACACGTTTTAGGCGCTAT
261 TTTAGGCTGTTATATTGTTATGGATCGATACATTTTTTAAAGTGTCGACACGTTTTAGGCGCTAT
*
10412821 AACTTCTTCTCTTTTAAATTTAGAAAGTGTCGATACTTA
326 AACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
10412860 TATTAAATTATCGACACTTTCAATATATCCGGTATCGTTTTACCGGTTTTGTCATTTTTTAGACC
1 TATTAAATTATCGACACTTTCAATATATCCGGTATCGTTTTACCGGTTTTGTCATTTTTTAGACC
* *
10412925 TGTTTTGTCTTATTTTTACCTGTTATATTGTTATGGATCTATACATTTTTTTAAAGTATCGACAC
66 TGTTTTGTCCTATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACAC
* *
10412990 TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGTCGATACTTATATTAAAGTATC
131 TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGGCAATACTTATATTAAAGTATC
10413055 GACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCGGTTTTGTCATAT
196 GACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCGGTTTTGTCATAT
*
10413120 TTTAGGCTGTTATATTGTTATGGATCGATACATTTTTTAAAGTGTCGACATGTTTTAGGCGCTAT
261 TTTAGGCTGTTATATTGTTATGGATCGATACATTTTTTAAAGTGTCGACACGTTTTAGGCGCTAT
10413185 AACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
326 AACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* *
10413224 TATTAAATTATCGAAACTTTCAATATATTCGGTATCGTTTTACCGGTTTTGTCATTTTTTAGACC
1 TATTAAATTATCGACACTTTCAATATATCCGGTATCGTTTTACCGGTTTTGTCATTTTTTAGACC
*
10413289 TTTTTTGTCCTATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACAC
66 TGTTTTGTCCTATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACAC
*
10413354 TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGT-GTAGATACTTATATTAAAGTAT
131 TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGGCA-ATACTTATATTAAAGTAT
* *
10413418 CGACACTTTCAACATATCCGATAGTTATTTACCTGTTTTGTCATTTTGAGACCGATTTTGTCATA
195 CGACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCGGTTTTGTCATA
* * ** *
10413483 TTTTAGGTTGTTATATTGTTATGGATTGATACATTTGCATAAAGTGTCGACATGTTTTAGGCGCT
260 TTTTAGGCTGTTATATTGTTATGGATCGATACATTT-TTTAAAGTGTCGACACGTTTTAGGCGCT
*
10413548 ATAACTTCTTTTCTTTTAAATTCAGAAAGTGTCGATACTTA
324 ATAACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
* * * *
10413589 TATTAAATTATCGACACTTTCAACATATCCGGTAGCGCTTTACCTGTTTTGTCATATTTTTA
1 TATTAAATTATCGACACTTTCAATATATCCGGTATCGTTTTACCGGTTTTGTCAT-TTTTTA
10413651 CCTGTTATAT
Statistics
Matches: 1101, Mismatches: 48, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
363 177 0.16
364 749 0.68
365 169 0.15
366 6 0.01
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.44
Consensus pattern (364 bp):
TATTAAATTATCGACACTTTCAATATATCCGGTATCGTTTTACCGGTTTTGTCATTTTTTAGACC
TGTTTTGTCCTATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTTTAAAGTATCGACAC
TTTATAGGCGCTATAACTTCTTCTCTTTTAAATTCCAAAAGTGGCAATACTTATATTAAAGTATC
GACACTTTCAACATATCCGGTAGTTATTTACCTGTTTTGTCATTTTGAGACCGGTTTTGTCATAT
TTTAGGCTGTTATATTGTTATGGATCGATACATTTTTTAAAGTGTCGACACGTTTTAGGCGCTAT
AACTTCTTCTCTTTTAAATTCAGAAAGTGTCGATACTTA
Found at i:10414628 original size:29 final size:29
Alignment explanation
Indices: 10414569--10414629 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
10414559 ATAAAAAATC
** *
10414569 TGCCAAACTTTGAATTATGCACCATTCGG
1 TGCCAAACTTTGAACCATGCACCAATCGG
10414598 TGCCAAACTTTGAACCATGCACCGAAT-GG
1 TGCCAAACTTTGAACCATGCACC-AATCGG
10414627 TGC
1 TGC
10414630 AGCCATTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 26 0.93
30 2 0.07
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (29 bp):
TGCCAAACTTTGAACCATGCACCAATCGG
Found at i:10429830 original size:31 final size:31
Alignment explanation
Indices: 10429790--10429865 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
10429780 ACCCTTGAAT
* *
10429790 TTTATACAAAATATTAATTTGACATC-TAAAA
1 TTTAGACAAAATATCAATTTGAC-TCTTAAAA
* *
10429821 TTTAGACAAAATATCAATTTTACTCTTAAAT
1 TTTAGACAAAATATCAATTTGACTCTTAAAA
*
10429852 TTTAGATAAAATAT
1 TTTAGACAAAATAT
10429866 ACATTTAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 2 0.05
31 37 0.95
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (31 bp):
TTTAGACAAAATATCAATTTGACTCTTAAAA
Found at i:10434767 original size:90 final size:89
Alignment explanation
Indices: 10434653--10434827 Score: 296
Period size: 90 Copynumber: 2.0 Consensus size: 89
10434643 TCTCGAATAT
* * *
10434653 TTAATTTCAATTAATTAAATATAGATTTAATTAATTTCAAATAATAAAATCCCTAATATGATTAG
1 TTAAATTCAATTAATTAAATATAGAATTAATTAATTTCAAATAATAAAAACCCTAATATGATTAG
10434718 GGTAACTTGGATATAAAAGGATTA
66 GGTAACTTGGATATAAAAGGATTA
*
10434742 TTAAATTCTAATTAATTAAATATAGAATTAATTAATTTGAAATAATAAAAACCCTAATATGATTA
1 TTAAATTC-AATTAATTAAATATAGAATTAATTAATTTCAAATAATAAAAACCCTAATATGATTA
*
10434807 GGGTAACTTGGCTATAAAAGG
65 GGGTAACTTGGATATAAAAGG
10434828 GTGTGTTAGG
Statistics
Matches: 80, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 7 0.09
90 73 0.91
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.37
Consensus pattern (89 bp):
TTAAATTCAATTAATTAAATATAGAATTAATTAATTTCAAATAATAAAAACCCTAATATGATTAG
GGTAACTTGGATATAAAAGGATTA
Found at i:10441497 original size:20 final size:20
Alignment explanation
Indices: 10441430--10441499 Score: 61
Period size: 22 Copynumber: 3.3 Consensus size: 20
10441420 ATATCTAGAG
*
10441430 TTAATTAAGTATATATTTTAA
1 TTAATTAAATATATA-TTTAA
* *
10441451 -TAATCTCGAATATTTAATTTCAA
1 TTAAT-T-AAATATAT-ATTT-AA
10441474 TTAATTAAATATATATTTAA
1 TTAATTAAATATATATTTAA
10441494 TTAATT
1 TTAATT
10441500 TGAAATAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
20 12 0.31
21 5 0.13
22 14 0.36
23 4 0.10
24 4 0.10
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.50
Consensus pattern (20 bp):
TTAATTAAATATATATTTAA
Found at i:10441582 original size:90 final size:89
Alignment explanation
Indices: 10441464--10441636 Score: 292
Period size: 90 Copynumber: 1.9 Consensus size: 89
10441454 TCTCGAATAT
* * * *
10441464 TTAATTTCAATTAATTAAATATATATTTAATTAATTTGAAATAATAAAATCCCTAATATGATTAG
1 TTAAATTCAATTAATTAAATATAAATTTAATTAATTTGAAATAATAAAAACCCTAATATGACTAG
10441529 GGTAACTTGGATATAAAAGGATTA
66 GGTAACTTGGATATAAAAGGATTA
10441553 TTAAATTCTAATTAATTAAATATAAATTTAATTAATTTGAAATAATAAAAACCCTAATATGACTA
1 TTAAATTC-AATTAATTAAATATAAATTTAATTAATTTGAAATAATAAAAACCCTAATATGACTA
*
10441618 GGGTAACTTGGCTATAAAA
65 GGGTAACTTGGATATAAAA
10441637 AGGTGTGTTA
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 7 0.09
90 71 0.91
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.38
Consensus pattern (89 bp):
TTAAATTCAATTAATTAAATATAAATTTAATTAATTTGAAATAATAAAAACCCTAATATGACTAG
GGTAACTTGGATATAAAAGGATTA
Found at i:10442963 original size:43 final size:41
Alignment explanation
Indices: 10442916--10443031 Score: 103
Period size: 43 Copynumber: 2.8 Consensus size: 41
10442906 GCCACTAAGG
* *
10442916 TACATCACTATTGCGCTGTTTATTACAAAAAATTTCACTA-AA
1 TACATGACTATTGCGCTGTTTATTACAAAAAA--ACACTATAA
* * *
10442958 TTACATGATTATTGTTGC-GTTTGTTACAAAAACAACACTATAA
1 -TACATGACTATTG-CGCTGTTTATTACAAAAA-AACACTATAA
* *
10443001 TACATGACTATTGCGGTGTTTA-AACAAAAAA
1 TACATGACTATTGCGCTGTTTATTACAAAAAA
10443032 CGCCACTAAA
Statistics
Matches: 59, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
40 1 0.02
41 8 0.14
42 21 0.36
43 26 0.44
44 3 0.05
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (41 bp):
TACATGACTATTGCGCTGTTTATTACAAAAAAACACTATAA
Found at i:10443072 original size:85 final size:85
Alignment explanation
Indices: 10442916--10443072 Score: 192
Period size: 84 Copynumber: 1.8 Consensus size: 85
10442906 GCCACTAAGG
* *** * * * *
10442916 TACATCACTATTGCGCTGTTTATTACAAAAAATTTCACTAAATTACATGATTATTGTTGCGTTTG
1 TACATCACTATTGCGCTGTTTATAACAAAAAACGCCACTAAAGTACAAGATTATAGTGGCGTTTG
10442981 TTACAAAAACAACACTATAA
66 TTACAAAAACAACACTATAA
* *
10443001 TACATGACTATTGCGGTGTTTA-AACAAAAAACGCCACTAAAGTACAAG-TCTATAGTGGCGTTT
1 TACATCACTATTGCGCTGTTTATAACAAAAAACGCCACTAAAGTACAAGAT-TATAGTGGCGTTT
10443064 GTTCACAAA
65 GTT-ACAAA
10443073 CAAAACGAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
83 1 0.02
84 34 0.57
85 25 0.42
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.32
Consensus pattern (85 bp):
TACATCACTATTGCGCTGTTTATAACAAAAAACGCCACTAAAGTACAAGATTATAGTGGCGTTTG
TTACAAAAACAACACTATAA
Found at i:10443227 original size:42 final size:41
Alignment explanation
Indices: 10443180--10443418 Score: 143
Period size: 42 Copynumber: 5.8 Consensus size: 41
10443170 ATGTTATACA
10443180 ACTCTATTACGGCATTTGTTTAAAAAACGCCACTAAAGTGCT
1 ACTCTATTACGGCATTTGTTT-AAAAACGCCACTAAAGTGCT
* ** * *
10443222 ACTCTATTGCGGCGCTTGTTGTAAAAACGCCATTATATA-TG-A
1 ACTCTATTACGGCATTTGTT-TAAAAACGCCACTA-A-AGTGCT
* ** *
10443264 ACCCTATTGTGGCATTTG-TTGAAAA-GCCACTAAAGTGCT
1 ACTCTATTACGGCATTTGTTTAAAAACGCCACTAAAGTGCT
* ** * *
10443303 ACTCTATTACGACGCTTGTTGTAAAAATGCCACTATATA-TG-A
1 ACTCTATTACGGCATTTGTT-TAAAAACGCCACTA-A-AGTGCT
* * * * *
10443345 ACCCTATTACGGCATTT-TTATACAAACACCGCTAAAGTACT
1 ACTCTATTACGGCATTTGTT-TAAAAACGCCACTAAAGTGCT
* * * *
10443386 -CTCTGTTGCGGCGTTTGTTGAAAAACGCCACTA
1 ACTCTATTACGGCATTTGTTTAAAAACGCCACTA
10443419 TATATGAACC
Statistics
Matches: 145, Mismatches: 39, Indels: 28
0.68 0.18 0.13
Matches are distributed among these distances:
37 1 0.01
38 3 0.02
39 19 0.13
40 30 0.21
41 20 0.14
42 63 0.43
43 7 0.05
44 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (41 bp):
ACTCTATTACGGCATTTGTTTAAAAACGCCACTAAAGTGCT
Found at i:10443297 original size:81 final size:82
Alignment explanation
Indices: 10443183--10443435 Score: 307
Period size: 81 Copynumber: 3.1 Consensus size: 82
10443173 TTATACAACT
* *
10443183 CTATTACGGCATTTGTTTAAAAAACGCCACTAAAGTGCTACTCTATTGCGGCGCTTGTTGTAAAA
1 CTATTGCGGCA-TT-TTTAGAAAACGCCACTAAAGTGCTACTCTATTGCGGCGCTTGTTGTAAAA
*
10443248 ACGCCATTATATATGAACC
64 ACGCCACTATATATGAACC
* * *
10443267 CTATTGTGGCATTTGTT-GAAAA-GCCACTAAAGTGCTACTCTATTACGACGCTTGTTGTAAAAA
1 CTATTGCGGCATTT-TTAGAAAACGCCACTAAAGTGCTACTCTATTGCGGCGCTTGTTGTAAAAA
*
10443330 TGCCACTATATATGAACC
65 CGCCACTATATATGAACC
* * * * * * *
10443348 CTATTACGGCATTTTTATACAAACACCGCTAAAGTACT-CTCTGTTGCGGCGTTTGTTG-AAAAA
1 CTATTGCGGCATTTTTAGA-AAACGCCACTAAAGTGCTACTCTATTGCGGCGCTTGTTGTAAAAA
10443411 CGCCACTATATATGAACC
65 CGCCACTATATATGAACC
*
10443429 ATATTGC
1 CTATTGC
10443436 AGCGTCTATA
Statistics
Matches: 145, Mismatches: 20, Indels: 11
0.82 0.11 0.06
Matches are distributed among these distances:
80 2 0.01
81 95 0.66
82 24 0.17
83 15 0.10
84 9 0.06
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (82 bp):
CTATTGCGGCATTTTTAGAAAACGCCACTAAAGTGCTACTCTATTGCGGCGCTTGTTGTAAAAAC
GCCACTATATATGAACC
Found at i:10443459 original size:81 final size:82
Alignment explanation
Indices: 10443212--10443461 Score: 283
Period size: 81 Copynumber: 3.1 Consensus size: 82
10443202 AAAAACGCCA
* *
10443212 CTAAAGTGCTACTCTATTGCGGCGCTTGTTGTAAAAACGCCATTATATATGAACCCTATTGTGGC
1 CTAAAGTGCTACTCTATTGCGGCGCTTGTTGTAAAAACGCCACTATATATGAACCCTATTGCGGC
* * *
10443277 ATTTGT-TGAAAAGC-CA
66 ATTTATAT-AAAAACACG
* * * *
10443293 CTAAAGTGCTACTCTATTACGACGCTTGTTGTAAAAATGCCACTATATATGAACCCTATTACGGC
1 CTAAAGTGCTACTCTATTGCGGCGCTTGTTGTAAAAACGCCACTATATATGAACCCTATTGCGGC
* *
10443358 ATTTTTATACAAACACCG
66 ATTTATATAAAAACA-CG
* * * * *
10443376 CTAAAGTACT-CTCTGTTGCGGCGTTTGTTG-AAAAACGCCACTATATATGAACCATATTGCAGC
1 CTAAAGTGCTACTCTATTGCGGCGCTTGTTGTAAAAACGCCACTATATATGAACCCTATTGCGGC
* *
10443439 GTCTATATAAAAACATCG
66 ATTTATATAAAAACA-CG
10443457 CTAAA
1 CTAAA
10443462 TTGACCATTT
Statistics
Matches: 142, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
81 115 0.81
82 17 0.12
83 10 0.07
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31
Consensus pattern (82 bp):
CTAAAGTGCTACTCTATTGCGGCGCTTGTTGTAAAAACGCCACTATATATGAACCCTATTGCGGC
ATTTATATAAAAACACG
Found at i:10444012 original size:13 final size:15
Alignment explanation
Indices: 10443968--10444006 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
10443958 AGGGGGCAAA
10443968 AGAGAAAAAGAGGAG
1 AGAGAAAAAGAGGAG
10443983 AGAGAAAAAGAGGAG
1 AGAGAAAAAGAGGAG
10443998 AGAGAAAAA
1 AGAGAAAAA
10444007 ATAGAGCGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (15 bp):
AGAGAAAAAGAGGAG
Found at i:10453307 original size:42 final size:43
Alignment explanation
Indices: 10453260--10453378 Score: 127
Period size: 43 Copynumber: 2.8 Consensus size: 43
10453250 TTGGGCCCCC
* * *
10453260 ATTTTTCATCTTTATAATT-AGGTCATTAATTTTA-TAAATCTT
1 ATTTTTCATCTTTATAATTGAGGTC-CTAATATTATTAAATCTA
* * *
10453302 ATTTTTCACCTTTATAATTGCGGTCCTAATATTATTCAATCTA
1 ATTTTTCATCTTTATAATTGAGGTCCTAATATTATTAAATCTA
*
10453345 ACTTTTT-ATCTTTATAATTGAAGTCTCTAATATT
1 A-TTTTTCATCTTTATAATTGAGGTC-CTAATATT
10453379 TTTCAATCCC
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 25 0.39
43 26 0.41
44 13 0.20
ACGTcount: A:0.29, C:0.13, G:0.06, T:0.51
Consensus pattern (43 bp):
ATTTTTCATCTTTATAATTGAGGTCCTAATATTATTAAATCTA
Found at i:10453417 original size:42 final size:42
Alignment explanation
Indices: 10453303--10453417 Score: 115
Period size: 42 Copynumber: 2.7 Consensus size: 42
10453293 ATAAATCTTA
* *
10453303 TTTTTCACCTTTATAATTGCGGTCCTAATATTATTCAATCTAAC
1 TTTTT-ACCTTTATAATTGAGGCCCTAATATTATTCAATC-AAC
* * * * *
10453347 TTTTTATCTTTATAATTGAAGTCTCTAATATTTTTCAATC-CC
1 TTTTTACCTTTATAATTG-AGGCCCTAATATTATTCAATCAAC
*
10453389 TTTTTACCTTTATAATTGGGGCCCCTAAT
1 TTTTTACCTTTATAATTGAGG-CCCTAAT
10453418 TTTGTAATCT
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
41 1 0.02
42 24 0.41
43 12 0.21
44 21 0.36
ACGTcount: A:0.25, C:0.19, G:0.08, T:0.48
Consensus pattern (42 bp):
TTTTTACCTTTATAATTGAGGCCCTAATATTATTCAATCAAC
Found at i:10453434 original size:42 final size:43
Alignment explanation
Indices: 10453326--10453682 Score: 230
Period size: 44 Copynumber: 8.3 Consensus size: 43
10453316 TAATTGCGGT
* * * * *
10453326 CCTAATATTATTCAATCTAACTTTTTATCTTTATAATTGAAGTC
1 CCTAAT-TTTTTCAATCTCACTTTTTACCTTTATAATTGAGGCC
* *
10453370 TCTAATATTTTTCAATC-C-CTTTTTACCTTTATAATTGGGGCC
1 CCTAAT-TTTTTCAATCTCACTTTTTACCTTTATAATTGAGGCC
* * * * * *
10453412 CCTAATTTTGT-AATCTCAC-TTTTAAC-TTGTGATTGAAGCT
1 CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTGAGGCC
** * *
10453452 TTTAAGATTTTTT-AATCTCACTTTCTACCTTT-TCAATTGAGGTC
1 CCT-A-ATTTTTTCAATCTCACTTTTTACCTTTAT-AATTGAGGCC
* * * * *
10453496 TCTAAGTTTTTTTAATCTCAATTTCTACCTTTATAACTGAGGCC
1 CCTAA-TTTTTTCAATCTCACTTTTTACCTTTATAATTGAGGCC
* * *
10453540 CCTAATTTTTTAAATCTCATTTTTTAACTTTATAATTGAGGCC
1 CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTGAGGCC
* * * * * *
10453583 CTTAAGTTTTTTTAATCGCACTTTCTAACTTTCTAATTGAGG--
1 CCTAA-TTTTTTCAATCTCACTTTTTACCTTTATAATTGAGGCC
* * * * * *
10453625 CCT-CTTTTTTCAATCTCAATTTCTACATTTATAATTAAGTCC
1 CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTGAGGCC
*
10453667 TCTAATTTTTTACAAT
1 CCTAATTTTTT-CAAT
10453683 TTCATAAAAT
Statistics
Matches: 246, Mismatches: 52, Indels: 30
0.75 0.16 0.09
Matches are distributed among these distances:
40 42 0.17
41 12 0.05
42 45 0.18
43 56 0.23
44 90 0.37
45 1 0.00
ACGTcount: A:0.26, C:0.18, G:0.08, T:0.48
Consensus pattern (43 bp):
CCTAATTTTTTCAATCTCACTTTTTACCTTTATAATTGAGGCC
Found at i:10453577 original size:87 final size:86
Alignment explanation
Indices: 10453458--10453649 Score: 221
Period size: 87 Copynumber: 2.2 Consensus size: 86
10453448 AGCTTTTAAG
* * *
10453458 ATTTTTTAATCTCACTTTCTACCTTTTCAATTGAGG-TCTCTAAGTTTTTTTAATCTCAATTTCT
1 ATTTTTTAATCTCACTTTCTAACTTTTCAATTGAGGCCCT-TAAGTTTTTTTAATCGCAATTTCT
*
10453522 ACCTTTATAACTGAGGCCCCTA
65 AACTTTATAACTGAGGCCCCTA
* * *
10453544 ATTTTTTAAATCTCATTTTTTAACTTTAT-AATTGAGGCCCTTAAGTTTTTTTAATCGCACTTTC
1 ATTTTTT-AATCTCACTTTCTAACTTT-TCAATTGAGGCCCTTAAGTTTTTTTAATCGCAATTTC
* * *
10453608 TAACTTTCTAATTGAGGCCTCT-
64 TAACTTTATAACTGAGGCCCCTA
* *
10453630 -TTTTTCAATCTCAATTTCTA
1 ATTTTTTAATCTCACTTTCTA
10453650 CATTTATAAT
Statistics
Matches: 90, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
84 12 0.13
85 5 0.06
86 7 0.08
87 63 0.70
88 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.08, T:0.48
Consensus pattern (86 bp):
ATTTTTTAATCTCACTTTCTAACTTTTCAATTGAGGCCCTTAAGTTTTTTTAATCGCAATTTCTA
ACTTTATAACTGAGGCCCCTA
Found at i:10455590 original size:39 final size:39
Alignment explanation
Indices: 10455547--10455624 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
10455537 CTATGGATTT
10455547 TTAAATTATTTGTGAGGACAAATTTCTATATTAACCTCA
1 TTAAATTATTTGTGAGGACAAATTTCTATATTAACCTCA
10455586 TTAAATTATTTGTGAGGACAAATTTCTATATTAACCTCA
1 TTAAATTATTTGTGAGGACAAATTTCTATATTAACCTCA
10455625 CATTTTACAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (39 bp):
TTAAATTATTTGTGAGGACAAATTTCTATATTAACCTCA
Found at i:10459186 original size:12 final size:12
Alignment explanation
Indices: 10459169--10459202 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
10459159 TGCTTAACAC
10459169 TGAAGAAAATAA
1 TGAAGAAAATAA
10459181 TGAAGAAAATAA
1 TGAAGAAAATAA
**
10459193 CAAAGAAAAT
1 TGAAGAAAAT
10459203 GAAGAAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.03, G:0.15, T:0.15
Consensus pattern (12 bp):
TGAAGAAAATAA
Found at i:10463221 original size:75 final size:75
Alignment explanation
Indices: 10463098--10463240 Score: 277
Period size: 75 Copynumber: 1.9 Consensus size: 75
10463088 TAAACTCGGC
*
10463098 ATAAGCTGAATTCTTGTCTTAACTGTTAGAAAAAATAGAGAACATCACATAAAATTTATTCATTA
1 ATAAGCTGAATTCTTGTCTTAACTGTTAGAAAAAATAGAGAACATCACATAAAATTTATTCATGA
10463163 ATTTATGATT
66 ATTTATGATT
10463173 ATAAGCTGAATTCTTGTCTTAACTGTTAGAAAAAATAGAGAACATCACATAAAATTTATTCATGA
1 ATAAGCTGAATTCTTGTCTTAACTGTTAGAAAAAATAGAGAACATCACATAAAATTTATTCATGA
10463238 ATT
66 ATT
10463241 CTTGTCTTAT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 67 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (75 bp):
ATAAGCTGAATTCTTGTCTTAACTGTTAGAAAAAATAGAGAACATCACATAAAATTTATTCATGA
ATTTATGATT
Found at i:10465053 original size:2 final size:2
Alignment explanation
Indices: 10465046--10465071 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10465036 TATAAATTAA
10465046 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
10465072 TAAATTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10466508 original size:36 final size:36
Alignment explanation
Indices: 10466406--10466544 Score: 108
Period size: 35 Copynumber: 3.9 Consensus size: 36
10466396 TCTTAGGTCC
* * * *
10466406 ATAAGGAATTACCAGCTCGATCTG--TCTAAACCTAT
1 ATAAGGAATTACCAGCTTGATC-GAAGCTGAACATAT
* * * *
10466441 ATAAGGAATTACCAGTTTGACCGAAGCTGAACCTGT
1 ATAAGGAATTACCAGCTTGATCGAAGCTGAACATAT
* *
10466477 AATAAGGAATTACCAG-TTGATTGATA-TTGAACATAT
1 -ATAAGGAATTACCAGCTTGATCGA-AGCTGAACATAT
*
10466513 ATAAAGAATTACCAGCTTGATCAGAA-CTGAAC
1 ATAAGGAATTACCAGCTTGATC-GAAGCTGAAC
10466545 CTGCAGAGAC
Statistics
Matches: 84, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
34 1 0.01
35 33 0.39
36 32 0.38
37 18 0.21
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.27
Consensus pattern (36 bp):
ATAAGGAATTACCAGCTTGATCGAAGCTGAACATAT
Found at i:10470975 original size:26 final size:26
Alignment explanation
Indices: 10470918--10470975 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
10470908 TCATCATCAT
*
10470918 TATCAGCATCATGCACTGTTCATATA
1 TATCATCATCATGCACTGTTCATATA
* * * *
10470944 TATCATCATTATGCATTGTTTATTTA
1 TATCATCATCATGCACTGTTCATATA
10470970 TATCAT
1 TATCAT
10470976 TTCTTTTAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.29, C:0.17, G:0.09, T:0.45
Consensus pattern (26 bp):
TATCATCATCATGCACTGTTCATATA
Found at i:10471103 original size:24 final size:24
Alignment explanation
Indices: 10471070--10471115 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
10471060 TCATATAAAT
* *
10471070 TGCACCGAAGTGTCGCGTAGAATA
1 TGCACCGAAGTGCCACGTAGAATA
*
10471094 TGCACTGAAGTGCCACGTAGAA
1 TGCACCGAAGTGCCACGTAGAA
10471116 ATATCCCGAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.20
Consensus pattern (24 bp):
TGCACCGAAGTGCCACGTAGAATA
Found at i:10471984 original size:31 final size:31
Alignment explanation
Indices: 10471949--10472013 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
10471939 GAAAGACCTA
*
10471949 TCCATATGT-TCCAAAGAACATATGTAAATTG
1 TCCATATGTCT-CAAAGAACATAGGTAAATTG
* *
10471980 TCCATATGTCTCGAAGGACATAGGTAAATTG
1 TCCATATGTCTCAAAGAACATAGGTAAATTG
10472011 TCC
1 TCC
10472014 CTCGACTCTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (31 bp):
TCCATATGTCTCAAAGAACATAGGTAAATTG
Found at i:10472907 original size:55 final size:55
Alignment explanation
Indices: 10472842--10473094 Score: 393
Period size: 55 Copynumber: 4.6 Consensus size: 55
10472832 TCATACTTGG
* *
10472842 GGGTATCGATACACTCC-CTAGTGTACAGATACACAAATAGCACTCGATGTTTTGA
1 GGGTATCGATACACTCCTC-AGTGTACCGATACACAAATAGCATTCGATGTTTTGA
* *
10472897 GGGTATCGATACACTCCTCAGTGTACCGATACATAAATAGCATTTGATGTTTTGA
1 GGGTATCGATACACTCCTCAGTGTACCGATACACAAATAGCATTCGATGTTTTGA
* *
10472952 GGGTATCGATACACTCCTCAGTGTACCGATACACAAATGGCATTCAATGTTTTGA
1 GGGTATCGATACACTCCTCAGTGTACCGATACACAAATAGCATTCGATGTTTTGA
* * *
10473007 GGGTATCGATACACTTCTCAGTGTACCAATACACAAAT-GACATTTGATGTTTTGA
1 GGGTATCGATACACTCCTCAGTGTACCGATACACAAATAG-CATTCGATGTTTTGA
10473062 GGGTATCGATACACTCCTCAGTGTACCGATACA
1 GGGTATCGATACACTCCTCAGTGTACCGATACA
10473095 TACTCATACA
Statistics
Matches: 182, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
54 1 0.01
55 180 0.99
56 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (55 bp):
GGGTATCGATACACTCCTCAGTGTACCGATACACAAATAGCATTCGATGTTTTGA
Found at i:10476101 original size:20 final size:18
Alignment explanation
Indices: 10476063--10476101 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
10476053 TCTTATCTCT
*
10476063 TGTTCATATAATCTCTTA
1 TGTTCATATAATATCTTA
10476081 TGTTCATATCATATATCTTA
1 TGTTCATAT-A-ATATCTTA
10476101 T
1 T
10476102 AACTCATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 1 0.06
20 8 0.44
ACGTcount: A:0.28, C:0.15, G:0.05, T:0.51
Consensus pattern (18 bp):
TGTTCATATAATATCTTA
Found at i:10480790 original size:11 final size:14
Alignment explanation
Indices: 10480760--10480793 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
10480750 GTCTATTAAC
10480760 TCATCATTCCCTTA
1 TCATCATTCCCTTA
10480774 TCATCATTCCCTTA
1 TCATCATTCCCTTA
10480788 TCATCA
1 TCATCA
10480794 CGGGAACTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.24, C:0.35, G:0.00, T:0.41
Consensus pattern (14 bp):
TCATCATTCCCTTA
Found at i:10485239 original size:3 final size:3
Alignment explanation
Indices: 10485231--10485307 Score: 90
Period size: 3 Copynumber: 26.7 Consensus size: 3
10485221 CTGTAATGTA
* *
10485231 AAT AAT AAT AAT AAT -AT AAT TAT AA- AAT AAT AAT AGT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT
*
10485275 AA- AAT AAT AAT AAC AAT AAT AAT -AT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
10485308 AAACAAATGG
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
2 8 0.13
3 52 0.83
4 3 0.05
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:10485255 original size:11 final size:11
Alignment explanation
Indices: 10485234--10485307 Score: 80
Period size: 11 Copynumber: 6.7 Consensus size: 11
10485224 TAATGTAAAT
10485234 AATAATAATAA
1 AATAATAATAA
* *
10485245 TATAATTATAA
1 AATAATAATAA
10485256 AATAATAAT--
1 AATAATAATAA
*
10485265 AGTAATAAATAA
1 AATAAT-AATAA
10485277 AATAATAATAA
1 AATAATAATAA
*
10485288 CAATAATAATAT
1 -AATAATAATAA
10485300 AATAATAA
1 AATAATAA
10485308 AAACAAATGG
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
9 5 0.10
10 3 0.06
11 29 0.56
12 15 0.29
ACGTcount: A:0.66, C:0.01, G:0.01, T:0.31
Consensus pattern (11 bp):
AATAATAATAA
Found at i:10487744 original size:23 final size:21
Alignment explanation
Indices: 10487709--10487752 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
10487699 TACCAAATAT
10487709 AAAGAAAAAAAATAGACATTTGA
1 AAAGAAAAAAAAT-G-CATTTGA
* *
10487732 AAAGAATACAAATGCATTTGA
1 AAAGAAAAAAAATGCATTTGA
10487753 TATACCTGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 1 0.05
23 11 0.58
ACGTcount: A:0.59, C:0.07, G:0.14, T:0.20
Consensus pattern (21 bp):
AAAGAAAAAAAATGCATTTGA
Found at i:10495954 original size:21 final size:21
Alignment explanation
Indices: 10495907--10495967 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 21
10495897 CCCCCCATGA
10495907 GGGAACCGATTCCCCCTTCGAAG
1 GGGAACCGATTCCCCC--CGAAG
10495930 GGGAACCGATTCCCCCC-ACAG
1 GGGAACCGATTCCCCCCGA-AG
* *
10495951 GGGAATCGATACCCCCC
1 GGGAACCGATTCCCCCC
10495968 TGGGGTTCTG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.03
21 18 0.51
23 16 0.46
ACGTcount: A:0.23, C:0.39, G:0.25, T:0.13
Consensus pattern (21 bp):
GGGAACCGATTCCCCCCGAAG
Found at i:10503407 original size:19 final size:19
Alignment explanation
Indices: 10503367--10503408 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
10503357 AAACCCTAAT
* *
10503367 TAAATTATAAAAATTAGTA
1 TAAATTATAAAAAATAGAA
10503386 TAAATTATAAATAAATA-AA
1 TAAATTATAAA-AAATAGAA
10503405 TAAA
1 TAAA
10503409 AATTTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (19 bp):
TAAATTATAAAAAATAGAA
Found at i:10510000 original size:35 final size:35
Alignment explanation
Indices: 10509958--10510028 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
10509948 AAGAAATAAG
*
10509958 TTTATGGGCCCTACTTTTAATTTAGTTTATTAATA
1 TTTATGGGCCCTACTTTTAATTTAGTATATTAATA
*
10509993 TTTATGGGCCCTGCTTTTAATTTAGTATATTAATA
1 TTTATGGGCCCTACTTTTAATTTAGTATATTAATA
10510028 T
1 T
10510029 AGTTTTTAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.25, C:0.11, G:0.13, T:0.51
Consensus pattern (35 bp):
TTTATGGGCCCTACTTTTAATTTAGTATATTAATA
Found at i:10510130 original size:3 final size:3
Alignment explanation
Indices: 10510122--10510153 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
10510112 GGATACTATC
10510122 ATT ATT ATT ATT ATT A-T ATT ATT -TT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
10510154 ATAATAATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.15
3 23 0.85
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:10511451 original size:146 final size:146
Alignment explanation
Indices: 10511181--10511455 Score: 338
Period size: 146 Copynumber: 1.9 Consensus size: 146
10511171 TCTCGCCGGA
* *
10511181 GATCGGGATCTCTGATCAACATTCCGAACGGTCAAAAGTTGCGGAAGGCCATCACGAACAACATA
1 GATCGGAATCTCTGATCAACATTCCGAACGGTCAAAAGTTGCGGAAGGCCAACACGAACAACATA
* ** * ** *
10511246 TTGAAAATTCAAGACGATCGGACGGTGGACGGTGACGGATCGGAGAAAACATATCCGGACGGTTT
66 TTGAAAAATCAAGACGATCGGACGGTGGACGACGACAGATCAAAGAAAACACATCCGGACGGTTT
10511311 TTAGCCTCTTGCTGGT
131 TTAGCCTCTTGCTGGT
* * * * * *
10511327 GATCGGAATCT-TCGATCAATATTCCGAATGGTGAAAAGTTGTGTG-ATGCCAACACGAACAACC
1 GATCGGAATCTCT-GATCAACATTCCGAACGGTCAAAAGTTGCG-GAAGGCCAACACGAACAACA
* * * * *
10511390 TATTGAAAAATCAGGACGATCGGACGGTGGATGACGGCAGATCAAAGAAAATACATTCGGACGGT
64 TATTGAAAAATCAAGACGATCGGACGGTGGACGACGACAGATCAAAGAAAACACATCCGGACGGT
10511455 T
129 T
10511456 ATCTTTGTAT
Statistics
Matches: 107, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
145 1 0.01
146 105 0.98
147 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (146 bp):
GATCGGAATCTCTGATCAACATTCCGAACGGTCAAAAGTTGCGGAAGGCCAACACGAACAACATA
TTGAAAAATCAAGACGATCGGACGGTGGACGACGACAGATCAAAGAAAACACATCCGGACGGTTT
TTAGCCTCTTGCTGGT
Found at i:10517806 original size:3 final size:3
Alignment explanation
Indices: 10517798--10517832 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
10517788 CTTTAGTATT
10517798 GAA GAA GAA GAA GAA GAA GAA GAA GAA GATA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GA-A GAA G
10517833 GCCTTGGTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.63, C:0.00, G:0.34, T:0.03
Consensus pattern (3 bp):
GAA
Found at i:10518973 original size:8 final size:8
Alignment explanation
Indices: 10518954--10519023 Score: 67
Period size: 7 Copynumber: 8.8 Consensus size: 8
10518944 CTTAAAGATA
10518954 AAAAAATG
1 AAAAAATG
10518962 -AAAAATG
1 AAAAAATG
10518969 AAAAAAATG
1 -AAAAAATG
10518978 AAAAAAAATG
1 --AAAAAATG
10518988 AAAAAATG
1 AAAAAATG
*
10518996 -AAATA-G
1 AAAAAATG
10519002 AAAAAATGG
1 AAAAAAT-G
10519011 AAAAAAT-
1 AAAAAATG
10519018 AAAAAA
1 AAAAAA
10519024 AAAGAAGAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
6 1 0.02
7 21 0.39
8 8 0.15
9 15 0.28
10 9 0.17
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.11
Consensus pattern (8 bp):
AAAAAATG
Found at i:10518974 original size:9 final size:9
Alignment explanation
Indices: 10518953--10519035 Score: 63
Period size: 9 Copynumber: 9.8 Consensus size: 9
10518943 GCTTAAAGAT
10518953 AAAAAAATG
1 AAAAAAATG
10518962 --AAAAATG
1 AAAAAAATG
10518969 AAAAAAATG
1 AAAAAAATG
10518978 AAAAAAAATG
1 -AAAAAAATG
10518988 -AAAAAATG
1 AAAAAAATG
*
10518996 --AAATA-G
1 AAAAAAATG
10519002 -AAAAAATG
1 AAAAAAATG
* *
10519010 GAAAAAATA
1 AAAAAAATG
*
10519019 AAAAAAAAG
1 AAAAAAATG
10519028 AAGAAAAA
1 AA-AAAAA
10519036 AAGAAGAAGA
Statistics
Matches: 61, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
6 1 0.02
7 15 0.25
8 9 0.15
9 22 0.36
10 14 0.23
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (9 bp):
AAAAAAATG
Found at i:10518992 original size:33 final size:32
Alignment explanation
Indices: 10518954--10519036 Score: 93
Period size: 34 Copynumber: 2.6 Consensus size: 32
10518944 CTTAAAGATA
10518954 AAAAAATGAAAAATGAAAAAAATGAAAAAAAATG
1 AAAAAATGAAAAA-G-AAAAAATGAAAAAAAATG
* *
10518988 AAAAAATGAAATAGAAAAAATG-GAAAAAAT-
1 AAAAAATGAAAAAGAAAAAATGAAAAAAAATG
10519018 AAAAAA--AAAGAAGAAAAAA
1 AAAAAATGAAA-AAGAAAAAA
10519037 AGAAGAAGAA
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
28 3 0.07
29 8 0.18
30 6 0.13
31 7 0.16
32 8 0.18
33 1 0.02
34 12 0.27
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (32 bp):
AAAAAATGAAAAAGAAAAAATGAAAAAAAATG
Found at i:10519007 original size:26 final size:25
Alignment explanation
Indices: 10518947--10519066 Score: 81
Period size: 26 Copynumber: 4.7 Consensus size: 25
10518937 GGTTTTGCTT
10518947 AAAGATAAAAAAATGAAAAATGAAAA
1 AAAGA-AAAAAAATGAAAAATGAAAA
10518973 AAATGAAAAAAAATGAAAAAATG--AA
1 AAA-GAAAAAAAATG-AAAAATGAAAA
* *
10518998 ATAG--AAAAAATGGAAAAAATAAAAAA
1 AAAGAAAAAAAAT-G-AAAAAT-GAAAA
* *
10519024 AAAGAAGAAAAAAAGAAGAA-GAAAAA
1 AAAGAA-AAAAAATGAAAAATG-AAAA
*
10519050 AAACAAAAAAAAT-AAAA
1 AAAGAAAAAAAATGAAAA
10519067 GGGGGGTTCA
Statistics
Matches: 75, Mismatches: 9, Indels: 22
0.71 0.08 0.21
Matches are distributed among these distances:
22 7 0.09
23 8 0.11
24 4 0.05
25 10 0.13
26 26 0.35
27 13 0.17
28 1 0.01
29 6 0.08
ACGTcount: A:0.79, C:0.01, G:0.12, T:0.08
Consensus pattern (25 bp):
AAAGAAAAAAAATGAAAAATGAAAA
Found at i:10519034 original size:43 final size:41
Alignment explanation
Indices: 10518962--10519050 Score: 108
Period size: 43 Copynumber: 2.1 Consensus size: 41
10518952 TAAAAAAATG
* * *
10518962 AAAAATGAAAAAAATGAAAAAAAATGAAAAAATGAA-ATAGA
1 AAAAATGAAAAAAATAAAAAAAAAAGAAAAAAAGAAGA-AGA
*
10519003 AAAAATGGAAAAAATAAAAAAAAAGAAGAAAAAAAGAAGAAGA
1 AAAAATGAAAAAAAT-AAAAAAAA-AAGAAAAAAAGAAGAAGA
10519046 AAAAA
1 AAAAA
10519051 AACAAAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 14 0.34
42 7 0.17
43 19 0.46
44 1 0.02
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (41 bp):
AAAAATGAAAAAAATAAAAAAAAAAGAAAAAAAGAAGAAGA
Found at i:10519035 original size:14 final size:14
Alignment explanation
Indices: 10519018--10519052 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
10519008 TGGAAAAAAT
10519018 AAAAAAAAAGAAGA
1 AAAAAAAAAGAAGA
*
10519032 AAAAAAGAAGAAGA
1 AAAAAAAAAGAAGA
10519046 AAAAAAA
1 AAAAAAA
10519053 CAAAAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAGAAGA
Found at i:10519066 original size:14 final size:15
Alignment explanation
Indices: 10519013--10519066 Score: 51
Period size: 16 Copynumber: 3.6 Consensus size: 15
10519003 AAAAATGGAA
10519013 AAAATAAAAAAAAAG
1 AAAATAAAAAAAAAG
10519028 AAGAA-AAAAAGAAGAAG
1 AA-AATAAAAA-AA-AAG
*
10519045 AAAA-AAAACAAAA-
1 AAAATAAAAAAAAAG
10519058 AAAATAAAA
1 AAAATAAAA
10519067 GGGGGGTTCA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
13 4 0.12
14 6 0.18
15 9 0.26
16 10 0.29
17 5 0.15
ACGTcount: A:0.85, C:0.02, G:0.09, T:0.04
Consensus pattern (15 bp):
AAAATAAAAAAAAAG
Found at i:10520550 original size:108 final size:110
Alignment explanation
Indices: 10520346--10520629 Score: 491
Period size: 108 Copynumber: 2.6 Consensus size: 110
10520336 TGAAGCAAAA
*
10520346 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGGCCGACGCGATCGTTGAAGATTAT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATA-GGGGGCAGACGCGATCGTTGAAGATTAT
10520411 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
65 TCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
* *
10520457 GAAGATTG-TGGA-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
* *
10520520 CGAGTCTTATACTCTCTGAATAAATAGGGGGCAGACGCGATTGTT
66 CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
*
10520565 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGGAGATTATT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
10520630 GTTCGAGTTC
Statistics
Matches: 163, Mismatches: 8, Indels: 5
0.93 0.05 0.03
Matches are distributed among these distances:
108 78 0.48
109 25 0.15
110 52 0.32
111 8 0.05
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (110 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTTGAAGATTATT
CGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
Found at i:10520553 original size:55 final size:55
Alignment explanation
Indices: 10520346--10520626 Score: 467
Period size: 55 Copynumber: 5.1 Consensus size: 55
10520336 TGAAGCAAAA
*
10520346 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGGCCGACGCGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATA-GGGGGCAGACGCGATCGTT
* * *
10520402 GAAGATTATTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATTGAT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
*
10520457 GAAGATTG-TGGA-TCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
* *
10520510 GAAGATTGTTCGAGTCTTATACTCTCTGAATAAATAGGGGGCAGACGCGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
10520565 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
*
10520620 GGAGATT
1 GAAGATT
10520627 ATTGTTCGAG
Statistics
Matches: 209, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
53 47 0.22
54 6 0.03
55 121 0.58
56 35 0.17
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (55 bp):
GAAGATTGTTCGAGTCTTATACTCTCTGAAGAAATAGGGGGCAGACGCGATCGTT
Found at i:10520682 original size:52 final size:52
Alignment explanation
Indices: 10520622--10521380 Score: 1288
Period size: 52 Copynumber: 14.6 Consensus size: 52
10520612 CGATCGTTGG
10520622 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
** *
10520674 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCATTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
10520726 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
*
10520778 AGATTATTGTTCGAGTTCTAGTCCTTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
*
10520830 AGATTATTTTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* * *
10520882 AGATTATTGTTCGAGTTCTAGTCCCTAAAGAAAATTGGGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
10520934 AG-TTATTGTTCGAGTTCTAGTCCCTGAAG-AAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* *
10520984 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
*
10521036 AGATTATTGTTCGAGTTATAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
*
10521088 AGATTATTGTTCGAGTTCTAGTCCTTGAAGAAAATTGGGCAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* * * * *
10521140 AGATTATTTTTCAAGTTCTAGTCCCTGAAGAAAATTGGACAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* *
10521192 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
*
10521244 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGACAGACCCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* *
10521296 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGTCTCGTAGGA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
* *
10521348 AGATTATCGTTCGAGTTCTACTCCCTGAAGAAA
1 AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAA
10521381 TAGAGAGCGA
Statistics
Matches: 665, Mismatches: 40, Indels: 4
0.94 0.06 0.01
Matches are distributed among these distances:
50 21 0.03
51 53 0.08
52 591 0.89
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (52 bp):
AGATTATTGTTCGAGTTCTAGTCCCTGAAGAAAATTGGGCAGACCCGTAGGA
Found at i:10520756 original size:28 final size:28
Alignment explanation
Indices: 10520672--10520756 Score: 79
Period size: 28 Copynumber: 3.2 Consensus size: 28
10520662 AGACCCGTAG
10520672 GAAGATTATTGTTCGAGTTCTAGTCCCT
1 GAAGATTATTGTTCGAGTTCTAGTCCCT
** ** * **
10520700 GAAGAAAATTGGGC-A-TTCTCGT--AG
1 GAAGATTATTGTTCGAGTTCTAGTCCCT
10520724 GAAGATTATTGTTCGAGTTCTAGTCCCT
1 GAAGATTATTGTTCGAGTTCTAGTCCCT
10520752 GAAGA
1 GAAGA
10520757 AAATTGGGCA
Statistics
Matches: 39, Mismatches: 14, Indels: 8
0.64 0.23 0.13
Matches are distributed among these distances:
24 10 0.26
25 1 0.03
26 12 0.31
27 1 0.03
28 15 0.38
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (28 bp):
GAAGATTATTGTTCGAGTTCTAGTCCCT
Found at i:10520762 original size:28 final size:28
Alignment explanation
Indices: 10520627--10520762 Score: 78
Period size: 28 Copynumber: 5.1 Consensus size: 28
10520617 GTTGGAGATT
10520627 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
1 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
* **
10520655 ATTG---G-G--C-AGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTAGTCCC-T--GAAGAAA
10520679 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
1 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
** * ** **
10520707 ATTGGGC-A-TTCTCGT--AGGAAGATT
1 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
10520731 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
1 ATTGTTCGAGTTCTAGTCCCTGAAGAAA
10520759 ATTG
1 ATTG
10520763 GGCAGACCCG
Statistics
Matches: 74, Mismatches: 20, Indels: 28
0.61 0.16 0.23
Matches are distributed among these distances:
21 5 0.07
22 2 0.03
24 20 0.27
25 2 0.03
26 12 0.16
27 2 0.03
28 24 0.32
30 2 0.03
31 5 0.07
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (28 bp):
ATTGTTCGAGTTCTAGTCCCTGAAGAAA
Found at i:10521463 original size:55 final size:53
Alignment explanation
Indices: 10521249--10521451 Score: 166
Period size: 52 Copynumber: 3.8 Consensus size: 53
10521239 TAGGAAGATT
* * ** **
10521249 ATTGTTCGAGTTCTAGTCCCTGAAGAAAATTG-GA-C-AGACCCGTAGGAAGATT
1 ATTGTTCGAGTTCTACTCCCTGAAGAAAA-AGAGAGCGA-ACCCGTAAAAAGAAG
* * * * ** **
10521301 ATTGTTCGAGTTCTAGTCCCTGAAGAAAATTG-G-GC-AGTCTCGTAGGAAGATT
1 ATTGTTCGAGTTCTACTCCCTGAAGAAAA-AGAGAGCGA-ACCCGTAAAAAGAAG
* *
10521353 ATCGTTCGAGTTCTACTCCCTGAAGAAATAGAGAGCGAACCCGTAAAAAGAAG
1 ATTGTTCGAGTTCTACTCCCTGAAGAAAAAGAGAGCGAACCCGTAAAAAGAAG
10521406 ATTGTTCGAGTTCTATACTCCCTGAAGAAAAAGAGAGCGAACCCGT
1 ATTGTTCGAGTTC--TACTCCCTGAAGAAAAAGAGAGCGAACCCGT
10521452 TTGCAGAAGA
Statistics
Matches: 131, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
51 1 0.01
52 76 0.58
53 23 0.18
54 1 0.01
55 30 0.23
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (53 bp):
ATTGTTCGAGTTCTACTCCCTGAAGAAAAAGAGAGCGAACCCGTAAAAAGAAG
Found at i:10521646 original size:3 final size:3
Alignment explanation
Indices: 10521638--10521669 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
10521628 GGATACTATC
10521638 ATT ATT ATT ATT ATT A-T ATT ATT -TT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
10521670 ATAATAATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
2 4 0.15
3 23 0.85
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:10522969 original size:146 final size:146
Alignment explanation
Indices: 10522699--10522970 Score: 325
Period size: 146 Copynumber: 1.9 Consensus size: 146
10522689 TCTCGCCGGA
* *
10522699 GATCGGGATCTCTGATCAACATTCCGAACGGTCAAAAGTTGCGGAAGGCCATCACGAACAACATA
1 GATCGGAATCTCTGATCAACATTCCGAACGGTCAAAAGTTGCGGAAGGCCAACACGAACAACATA
* ** * ** *
10522764 TTGAAAATTCAAGACGATCGGACGGTGGACGGTGACGGATCGGAGAAAACATATCCGGACGATTT
66 TTGAAAAATCAAGACGATCGGACGGTGGACGACGACAGATCAAAGAAAACACATCCGGACGATTT
10522829 TTAGCCTCTTGCTGGT
131 TTAGCCTCTTGCTGGT
* * * * *
10522845 GATCGGAATCT-TCGATCAATATTCCGAATGGTGAAAAGTTGTGTG-ATGCCAACACGAACAA-A
1 GATCGGAATCTCT-GATCAACATTCCGAACGGTCAAAAGTTGCG-GAAGGCCAACACGAACAACA
* * * * *
10522907 CTATTGAAAAATCAGGACGATCGGACGGTGGATGACGGCAGATCAAAGAAAATACATTCGGACG
64 -TATTGAAAAATCAAGACGATCGGACGGTGGACGACGACAGATCAAAGAAAACACATCCGGACG
10522971 GTTATCTTTG
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
145 2 0.02
146 101 0.97
147 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.21
Consensus pattern (146 bp):
GATCGGAATCTCTGATCAACATTCCGAACGGTCAAAAGTTGCGGAAGGCCAACACGAACAACATA
TTGAAAAATCAAGACGATCGGACGGTGGACGACGACAGATCAAAGAAAACACATCCGGACGATTT
TTAGCCTCTTGCTGGT
Found at i:10527588 original size:16 final size:16
Alignment explanation
Indices: 10527563--10527605 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
10527553 ATAAAGTTTT
*
10527563 AATATAATATAATATA
1 AATATTATATAATATA
**
10527579 GGTATTATATAATATA
1 AATATTATATAATATA
10527595 AATATTATATA
1 AATATTATATA
10527606 GTGTAATATC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (16 bp):
AATATTATATAATATA
Found at i:10528155 original size:82 final size:83
Alignment explanation
Indices: 10528029--10528340 Score: 365
Period size: 82 Copynumber: 3.7 Consensus size: 83
10528019 TTGAATGAAA
* * * * *
10528029 TCGAACTCGAAGGTATTTTGGTGGCAGATAGCCCTTCTAGCCTTGAGCTATGCTGCAAATAATGT
1 TCGAACTCGAAGGT-CTTTGTTGGCAAATAGCCCTTCTAGCCTTGAGCTATGTTGCAAATGATGT
* *
10528094 GCCTTGGAGCTAAACGTAG
65 GCCTTGGAGCTGAGCGTAG
* * * *
10528113 TCGAACTC-AAGGTCTTTGTTAGCAAATAGCCCTTATAACCTTGAGCTATGTTGGAAATGATGTG
1 TCGAACTCGAAGGTCTTTGTTGGCAAATAGCCCTTCTAGCCTTGAGCTATGTTGCAAATGATGTG
* *
10528177 CATTGGAGCTGAGCATAG
66 CCTTGGAGCTGAGCGTAG
* * * * * **
10528195 TCGAACTCAAAGGTCTTTGTTGACAGATAACCCTTCTAGCCTTGAGTTATGTTATAAATGATGTT
1 TCGAACTCGAAGGTCTTTGTTGGCAAATAGCCCTTCTAGCCTTGAGCTATGTTGCAAATGATG-T
* * * *
10528260 CCCTCGAAGCTGAGTGTAG
65 GCCTTGGAGCTGAGCGTAG
*
10528279 TCGAACTCGAAGGTCTTTTGTTGGCAAATAGCCCTTCTTGCCTTGAGCTATGTTGCAAATGA
1 TCGAACTCGAAGGTC-TTTGTTGGCAAATAGCCCTTCTAGCCTTGAGCTATGTTGCAAATGA
10528341 ACACGATATC
Statistics
Matches: 189, Mismatches: 36, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
82 64 0.34
83 50 0.26
84 36 0.19
85 39 0.21
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (83 bp):
TCGAACTCGAAGGTCTTTGTTGGCAAATAGCCCTTCTAGCCTTGAGCTATGTTGCAAATGATGTG
CCTTGGAGCTGAGCGTAG
Found at i:10528570 original size:124 final size:124
Alignment explanation
Indices: 10528345--10528638 Score: 428
Period size: 124 Copynumber: 2.4 Consensus size: 124
10528335 AAATGAACAC
* * * *
10528345 GATATCCTTCGTCGTGAAGTTGAAATCCAATATGAAGATGAATGTTGCTGGTGAGCACGTTTCCC
1 GATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTACTGGTGAGCACGATTCCC
* **
10528410 TTCGTTGTAAAGTTAAAACCATGAATGGCTCATTCGTTGTGAAGTTGAGCCTTGAATTG
66 TTCGTCGTAAAGTTAAAACCATGAATGGCTCATTCGTTGTGAAGTTGAGCCGGGAATTG
* * *
10528469 GATATCCTCCGTCGTGAAGTTGAAATCTAATCTAAAGATGAATGTTACTGTTGAGCACGATTCCC
1 GATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTACTGGTGAGCACGATTCCC
* * * * *
10528534 TTCGTCGTGAAGTTGAAACCGTGGATGGCCTC-TTCGTTGTGAAGTTGAGCCGGGAATTT
66 TTCGTCGTAAAGTTAAAACCATGAATGG-CTCATTCGTTGTGAAGTTGAGCCGGGAATTG
*
10528593 GATATCCTTCTTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTT
1 GATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTT
10528639 GCTTCGAGTC
Statistics
Matches: 151, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
124 148 0.98
125 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.33
Consensus pattern (124 bp):
GATATCCTTCGTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTACTGGTGAGCACGATTCCC
TTCGTCGTAAAGTTAAAACCATGAATGGCTCATTCGTTGTGAAGTTGAGCCGGGAATTG
Found at i:10528831 original size:247 final size:246
Alignment explanation
Indices: 10528532--10529177 Score: 786
Period size: 240 Copynumber: 2.6 Consensus size: 246
10528522 AGCACGATTC
* * * **
10528532 CCTTCGTCGTGAAGTTGAAACCGTGGATGGCCTCTTCGTTGTGAAGTTGAGCCGGGAATTTGATA
1 CCTTCGTAGTGAAGTTGAAATCGTGGATGGCCCCTTCGTTGTGAAGTTGAGCCTTGAATTTGATA
* *
10528597 TCCTTCTTCGTGAAGTTGAAATCCAATCTAAAGATGAATGTTGCTTCGAGTCCAATATCATTCGC
66 TCCTTCATCGTGAAGTTGAAATCCAATCT--AG-TGAATGTTGCTTCGAGTCCAATATCCTTCGC
* * *
10528662 CGTGAAGTTGAAATTGGCTCTGAGTGAAACT-GAGAAGCCCCTTCGTCGTGAAGTTGAGCTTTGA
128 CGTGAAGTTGAAATTGGCTCTGAATAAAACTAG-GAAGCCCCTTCGCCGTGAAGTTGAGCTTTGA
* * *
10528726 ATTGGATATCCTTTGTCATGAAGTTGAAATCCAATCTAGAGT-TG-GCATGATAT
192 ATTGGATATCCTTAGTCATGAAGTTGAAATCCAATCTAGAGTGTGAGAACGATAT
* ** *
10528779 CCTTCGTTGTGAAGTTGAAATCGTGGATGGCCCCTTTATTGTGAAGTTGAGCCTTG-ACTTGAAT
1 CCTTCGTAGTGAAGTTGAAATCGTGGATGGCCCCTTCGTTGTGAAGTTGAGCCTTGAATTTG-AT
* ** * * *
10528843 ATCCTTCGTATTGAAGTTGAAATCCAAGCT--TG--TATTGTTTCGAGTCCAATATCCTTCGCCG
65 ATCCTTCATCGTGAAGTTGAAATCCAATCTAGTGAATGTTGCTTCGAGTCCAATATCCTTCGCCG
* *
10528904 TGAAGTTGAAATTGGTTTTGAATAAAACTAGGAAGCCCCTTCGCCGTGAAGTTGAGCTTTGAATT
130 TGAAGTTGAAATTGGCTCTGAATAAAACTAGGAAGCCCCTTCGCCGTGAAGTTGAGCTTTGAATT
** * * **
10528969 GGATATCCTTAGTTGTGAAGTTGAAATCCAATGTTGCTTGTGAGAACGATAT
195 GGATATCCTTAGTCATGAAGTTGAAATCCAATCTAGAGTGTGAGAACGATAT
* * * *
10529021 CATTCGTAGTGAAGTTGAAATTGTGGATGGCCCCTTCGCTGTGAAGTTGAGCCTTGAATTGGATA
1 CCTTCGTAGTGAAGTTGAAATCGTGGATGGCCCCTTCGTTGTGAAGTTGAGCCTTGAATTTGATA
* * *
10529086 TCCTTCATCGTGAAGTTGAAATCCAATATCGAGTAAATTGTGTCGCTTCGAGTTCAATATCCTTC
66 TCCTTCATCGTGAAGTTGAAATCC-A-ATCTAGTGAA-TGT-T-GCTTCGAGTCCAATATCCTTC
* *
10529151 GCTGTGAAGTTGAAATTGACTCTGAAT
126 GCCGTGAAGTTGAAATTGGCTCTGAAT
10529178 GAGACTCAGA
Statistics
Matches: 335, Mismatches: 50, Indels: 24
0.82 0.12 0.06
Matches are distributed among these distances:
240 116 0.35
241 3 0.01
242 83 0.25
243 4 0.01
244 2 0.01
246 5 0.01
247 77 0.23
249 2 0.01
250 1 0.00
251 42 0.13
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.33
Consensus pattern (246 bp):
CCTTCGTAGTGAAGTTGAAATCGTGGATGGCCCCTTCGTTGTGAAGTTGAGCCTTGAATTTGATA
TCCTTCATCGTGAAGTTGAAATCCAATCTAGTGAATGTTGCTTCGAGTCCAATATCCTTCGCCGT
GAAGTTGAAATTGGCTCTGAATAAAACTAGGAAGCCCCTTCGCCGTGAAGTTGAGCTTTGAATTG
GATATCCTTAGTCATGAAGTTGAAATCCAATCTAGAGTGTGAGAACGATAT
Found at i:10542831 original size:25 final size:26
Alignment explanation
Indices: 10542790--10542851 Score: 67
Period size: 27 Copynumber: 2.5 Consensus size: 26
10542780 TTAAATTTAA
10542790 AAAATAT-TTTTACATTAACAT-ATT
1 AAAATATATTTTACATTAACATAATT
* *
10542814 -AAATATATTTTATTATTAACTTAATT
1 AAAATATATTTTA-CATTAACATAATT
*
10542840 AAAAAATATTTT
1 AAAATATATTTT
10542852 TTGTTTTAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 6 0.19
24 5 0.16
25 7 0.23
26 3 0.10
27 10 0.32
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (26 bp):
AAAATATATTTTACATTAACATAATT
Found at i:10542850 original size:27 final size:26
Alignment explanation
Indices: 10542779--10542852 Score: 75
Period size: 25 Copynumber: 2.9 Consensus size: 26
10542769 ATTTATATAT
10542779 ATTAA-AT-TTAAAAAATATTTTTAC
1 ATTAACATATTAAAAAATATTTTTAC
* *
10542803 ATTAACATATT-AAATATA-TTTTATT
1 ATTAACATATTAAAAAATATTTTTA-C
*
10542828 ATTAACTTAATTAAAAAATATTTTT
1 ATTAACAT-ATTAAAAAATATTTTT
10542853 TGTTTTAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
24 10 0.25
25 15 0.38
26 5 0.12
27 6 0.15
28 4 0.10
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (26 bp):
ATTAACATATTAAAAAATATTTTTAC
Found at i:10542930 original size:29 final size:28
Alignment explanation
Indices: 10542884--10542968 Score: 77
Period size: 29 Copynumber: 2.9 Consensus size: 28
10542874 ATTCTATGTT
10542884 AAAATAT-TTTAAAGTTAAGATAAAAATA
1 AAAATATATTTAAA-TTAAGATAAAAATA
*
10542912 AAAATATATTTAATATTAA-A-AATAATA
1 AAAATATATTTAA-ATTAAGATAAAAATA
10542939 ATATAATATATTTAGTAAATTAAGATAAAA
1 A-A-AATATA-TT--TAAATTAAGATAAAA
10542969 TATACACTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 13
0.75 0.03 0.21
Matches are distributed among these distances:
27 7 0.15
28 9 0.20
29 15 0.33
30 3 0.07
31 5 0.11
32 4 0.09
33 3 0.07
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (28 bp):
AAAATATATTTAAATTAAGATAAAAATA
Found at i:10542970 original size:29 final size:28
Alignment explanation
Indices: 10542887--10543056 Score: 78
Period size: 30 Copynumber: 5.8 Consensus size: 28
10542877 CTATGTTAAA
*
10542887 ATATTT-TAAAGTTAAGATAAAAATAAAAAT
1 ATATTTATAAA-TTAAGAT-AAAAT-ATAAT
* *
10542917 ATATTTA-ATATTAAAAATAATAATATAAT
1 ATATTTATAAATT-AAGATAA-AATATAAT
*
10542946 ATATTTAGTAAATTAAGATAAAATAT-AC
1 ATATTTA-TAAATTAAGATAAAATATAAT
* * * * *
10542974 A-CTTTAAAAATTAAAATGATAATAAAAT
1 ATATTTATAAATTAAGAT-AAAATATAAT
* * *
10543002 ATATTTTTAAAAGTTTAGATAATAATAAAAT
1 ATATTTAT-AAA-TTAAGATAA-AATATAAT
* *
10543033 ATACATTTTTAAATTAAAATAAAA
1 AT--ATTTATAAATTAAGATAAAA
10543057 AATGTTTTTA
Statistics
Matches: 107, Mismatches: 20, Indels: 26
0.70 0.13 0.17
Matches are distributed among these distances:
26 9 0.08
27 9 0.08
28 4 0.04
29 23 0.21
30 27 0.25
31 26 0.24
32 3 0.03
33 6 0.06
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (28 bp):
ATATTTATAAATTAAGATAAAATATAAT
Found at i:10543001 original size:32 final size:31
Alignment explanation
Indices: 10542963--10543054 Score: 103
Period size: 31 Copynumber: 2.9 Consensus size: 31
10542953 GTAAATTAAG
*
10542963 ATAAAATATACACTTTAAAAATTAAAATGATA
1 ATAAAATATACA-TTTAAAAATTAAAATAATA
** * * *
10542995 ATAAAATATATTTTTAAAAGTTTAGATAATA
1 ATAAAATATACATTTAAAAATTAAAATAATA
**
10543026 ATAAAATATACATTTTTAAATTAAAATAA
1 ATAAAATATACATTTAAAAATTAAAATAA
10543055 AAAATGTTTT
Statistics
Matches: 47, Mismatches: 13, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
31 37 0.79
32 10 0.21
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (31 bp):
ATAAAATATACATTTAAAAATTAAAATAATA
Found at i:10543171 original size:27 final size:27
Alignment explanation
Indices: 10543080--10543171 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
10543070 GAAGTTAATA
*
10543080 ATAAAATATATCTAATAAGTTAATATA-
1 ATAAAATATTTCTAA-AAGTTAATATAT
* *
10543107 AAAAATATATTTCTCAAAGTTAATATAT
1 ATAAA-ATATTTCTAAAAGTTAATATAT
* * *
10543135 ATACAATATTTCTTAAAGTTATTATAT
1 ATAAAATATTTCTAAAAGTTAATATAT
10543162 ATAAAATATT
1 ATAAAATATT
10543172 ATAAATTTAA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
27 44 0.80
28 11 0.20
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.41
Consensus pattern (27 bp):
ATAAAATATTTCTAAAAGTTAATATAT
Found at i:10544685 original size:64 final size:65
Alignment explanation
Indices: 10544580--10544742 Score: 188
Period size: 65 Copynumber: 2.5 Consensus size: 65
10544570 CGGCGCACCA
* * *
10544580 AGTGTGCATCGATGCATGAAATGCATTCAATG-TTTGAAAAATAGCCTG-GTGCATCGATACATG
1 AGTGTGCATCGATGCAT-AAATGCATTCGATGTTTTGAAAAATAGCCAGAGTGCATCGATACATA
10544643 G
65 G
** ** *
10544644 CTTGTGCATCGATGCATCAAATGCATTCGATGTTTTG-AAAATATTCAGAGTGCATCGATGCATA
1 AGTGTGCATCGATGCAT-AAATGCATTCGATGTTTTGAAAAATAGCCAGAGTGCATCGATACATA
10544708 G
65 G
* *
10544709 AGAGTGCATCGGTGCATAGAATGCATTCGATGTT
1 AGTGTGCATCGATGCATA-AATGCATTCGATGTT
10544743 CAATTAATTC
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
64 37 0.45
65 46 0.55
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (65 bp):
AGTGTGCATCGATGCATAAATGCATTCGATGTTTTGAAAAATAGCCAGAGTGCATCGATACATAG
Found at i:10544714 original size:19 final size:19
Alignment explanation
Indices: 10544690--10544740 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
10544680 GAAAATATTC
10544690 AGAGTGCATCGATGCATAG
1 AGAGTGCATCGATGCATAG
*
10544709 AGAGTGCATCGGTGCATAG
1 AGAGTGCATCGATGCATAG
10544728 A-A-TGCATTCGATG
1 AGAGTGCA-TCGATG
10544741 TTCAATTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 4 0.14
18 6 0.21
19 19 0.66
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (19 bp):
AGAGTGCATCGATGCATAG
Found at i:10553189 original size:65 final size:63
Alignment explanation
Indices: 10553056--10553215 Score: 189
Period size: 65 Copynumber: 2.5 Consensus size: 63
10553046 TGCACCAAGT
* * ***
10553056 GTGCATCGATGCATGAAATGCATTCGATG-TTTGAAAAATAGCCTGGTGCATCGATGCATGGCTT
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAG-C-AGTGCATCGATGCATAGAGA
*
10553120 GTGCATCGATGCATCAAATGCATTCGATGTTTTGAAAACATTTAG-AGTGCATCGATGCATAGAG
1 GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAA-A--TAGCAGTGCATCGATGCATAGAG
10553184 A
63 A
* *
10553185 GTGCATCGGTGCATGGAATGCATTCGATGTT
1 GTGCATCGATGCATGAAATGCATTCGATGTT
10553216 CAATTAATTC
Statistics
Matches: 83, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
64 28 0.34
65 51 0.61
66 1 0.01
68 3 0.04
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (63 bp):
GTGCATCGATGCATGAAATGCATTCGATGTTTTGAAAAATAGCAGTGCATCGATGCATAGAGA
Found at i:10561565 original size:64 final size:63
Alignment explanation
Indices: 10561442--10561601 Score: 198
Period size: 64 Copynumber: 2.5 Consensus size: 63
10561432 CGGTTCACCA
* *
10561442 AGTGTGCATCGATGCATGAATGCATTCGATG-TTGAAAAATAGCCTGGTGCATCGATGCATGG
1 AGTGTGCATCGATGCATGAATGCATTCGATGTTTGAAAAATAGCCAGGTGCATCGATGCATAG
** * **
10561504 CTTGTGCATCGATGCATCAAATGCATTCGATGTTTG-AAAATATTCAGAGTGCATCGATGCATAG
1 AGTGTGCATCGATGCAT-GAATGCATTCGATGTTTGAAAAATAGCCAG-GTGCATCGATGCATAG
* *
10561568 AGAGTGCATCGGTGCATGGAATGCATTCGATGTT
1 AGTGTGCATCGATGCAT-GAATGCATTCGATGTT
10561602 CAATTAATTT
Statistics
Matches: 82, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
62 15 0.18
63 21 0.26
64 46 0.56
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (63 bp):
AGTGTGCATCGATGCATGAATGCATTCGATGTTTGAAAAATAGCCAGGTGCATCGATGCATAG
Found at i:10563198 original size:21 final size:21
Alignment explanation
Indices: 10563164--10563217 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
10563154 ACAAAGAAGC
* *
10563164 GATCGATCTTTTCTTTCGAGG
1 GATCGATCCTTTCTCTCGAGG
**
10563185 GATTTATCCTTTCTCTCGAGG
1 GATCGATCCTTTCTCTCGAGG
10563206 GATCGATCCTTT
1 GATCGATCCTTT
10563218 TGAAAAGGGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.15, C:0.22, G:0.20, T:0.43
Consensus pattern (21 bp):
GATCGATCCTTTCTCTCGAGG
Found at i:10563585 original size:21 final size:21
Alignment explanation
Indices: 10563555--10563611 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
10563545 TTTGAATCCC
* * *
10563555 GAAATGAACCTTCTTTAGCTA
1 GAAATCAACCTCCTCTAGCTA
10563576 GAAATCAACCTCCTCTAGCTA
1 GAAATCAACCTCCTCTAGCTA
10563597 GAAATCAACCTCCTC
1 GAAATCAACCTCCTC
10563612 AAGGATTAGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.33, C:0.30, G:0.11, T:0.26
Consensus pattern (21 bp):
GAAATCAACCTCCTCTAGCTA
Found at i:10567481 original size:56 final size:56
Alignment explanation
Indices: 10567414--10567522 Score: 175
Period size: 56 Copynumber: 1.9 Consensus size: 56
10567404 TCTAAAACTG
*
10567414 GATTAGCACAGAATCAG-TAAAGAAACGAAAGAACCGGTTGAAAACCGAAAAAATCA
1 GATTAACACAGAA-CAGATAAAGAAACGAAAGAACCGGTTGAAAACCGAAAAAATCA
* *
10567470 GATTAACACAGAACCGATAAAGAACCGAAAGAACCGGTTGAAAACCGAAAAAA
1 GATTAACACAGAACAGATAAAGAAACGAAAGAACCGGTTGAAAACCGAAAAAA
10567523 CCGAAGTGAA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
55 2 0.04
56 47 0.96
ACGTcount: A:0.52, C:0.17, G:0.19, T:0.11
Consensus pattern (56 bp):
GATTAACACAGAACAGATAAAGAAACGAAAGAACCGGTTGAAAACCGAAAAAATCA
Found at i:10567544 original size:30 final size:29
Alignment explanation
Indices: 10567481--10567552 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 29
10567471 ATTAACACAG
*
10567481 AACCGATAAAGAACCGAAAGAACCGGTTGAA
1 AACCGA-AAA-AACCGAAAGAACCGGCTGAA
* *
10567512 AACCGAAAAAACCGAAGTGAATCGGCTGAA
1 AACCGAAAAAACCGAA-AGAACCGGCTGAA
10567542 AACCGAAAAAA
1 AACCGAAAAAA
10567553 TCGATTTGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 7 0.19
30 24 0.65
31 6 0.16
ACGTcount: A:0.51, C:0.19, G:0.21, T:0.08
Consensus pattern (29 bp):
AACCGAAAAAACCGAAAGAACCGGCTGAA
Found at i:10571553 original size:20 final size:20
Alignment explanation
Indices: 10571528--10571576 Score: 89
Period size: 20 Copynumber: 2.5 Consensus size: 20
10571518 AAATAGGTAT
10571528 CGATACCATGGTCACAGTAC
1 CGATACCATGGTCACAGTAC
*
10571548 CGATACCATGGTCACAGTAT
1 CGATACCATGGTCACAGTAC
10571568 CGATACCAT
1 CGATACCAT
10571577 CAGGCCCAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (20 bp):
CGATACCATGGTCACAGTAC
Found at i:10571710 original size:21 final size:20
Alignment explanation
Indices: 10571686--10571731 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
10571676 TATTTTGCTG
10571686 AGAAAACATCCCCAAACGACT
1 AGAAAACA-CCCCAAACGACT
* * *
10571707 AGAAATCACCCCCAACGGCT
1 AGAAAACACCCCAAACGACT
10571727 AGAAA
1 AGAAA
10571732 CGACCATAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.46, C:0.33, G:0.13, T:0.09
Consensus pattern (20 bp):
AGAAAACACCCCAAACGACT
Found at i:10584502 original size:31 final size:31
Alignment explanation
Indices: 10584467--10584525 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
10584457 GATGACGATG
*
10584467 TAGTGAAT-ATTTTGTTACAAATCAATAATGT
1 TAGTG-ATCATTTTGTCACAAATCAATAATGT
10584498 TAGTGATCATTTTGTCACAAATCAATAA
1 TAGTGATCATTTTGTCACAAATCAATAA
10584526 CATTAGTTGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 2 0.08
31 24 0.92
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (31 bp):
TAGTGATCATTTTGTCACAAATCAATAATGT
Found at i:10584532 original size:31 final size:31
Alignment explanation
Indices: 10584467--10584532 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
10584457 GATGACGATG
* **
10584467 TAGTGAATATTTTGTTACAAATCAATAATGT
1 TAGTGAATATTTTGTCACAAATCAATAACAT
10584498 TAGTG-ATCATTTTGTCACAAATCAATAACAT
1 TAGTGAAT-ATTTTGTCACAAATCAATAACAT
10584529 TAGT
1 TAGT
10584533 TGTAACATCC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
30 2 0.06
31 29 0.94
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (31 bp):
TAGTGAATATTTTGTCACAAATCAATAACAT
Found at i:10586270 original size:18 final size:18
Alignment explanation
Indices: 10586247--10586317 Score: 106
Period size: 18 Copynumber: 3.9 Consensus size: 18
10586237 AGGGATTATC
10586247 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
* *
10586265 AGTGGTCCTTTGGGACAC
1 AGTGGTCCTTCGGGACAT
10586283 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGGGACAT
* *
10586301 AGTGGTCATACGGGACA
1 AGTGGTCCTTCGGGACA
10586318 AATTTTACGC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.20, C:0.21, G:0.34, T:0.25
Consensus pattern (18 bp):
AGTGGTCCTTCGGGACAT
Found at i:10586316 original size:36 final size:36
Alignment explanation
Indices: 10586246--10586317 Score: 117
Period size: 36 Copynumber: 2.0 Consensus size: 36
10586236 GAGGGATTAT
* **
10586246 CAGTGGTCCTTCGGGACATAGTGGTCCTTTGGGACA
1 CAGTGGTCCTTCGGGACATAGTGGTCATACGGGACA
10586282 CAGTGGTCCTTCGGGACATAGTGGTCATACGGGACA
1 CAGTGGTCCTTCGGGACATAGTGGTCATACGGGACA
10586318 AATTTTACGC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.19, C:0.22, G:0.33, T:0.25
Consensus pattern (36 bp):
CAGTGGTCCTTCGGGACATAGTGGTCATACGGGACA
Found at i:10588665 original size:2 final size:2
Alignment explanation
Indices: 10588658--10588691 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
10588648 AGTAAGAAAG
10588658 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10588692 TGAGTATCGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10590568 original size:18 final size:18
Alignment explanation
Indices: 10590545--10590589 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
10590535 AGGGATTATC
*
10590545 AGTGGTCCTTCGAGACGT
1 AGTGGTCCTTCGAGACAT
*
10590563 AGTGGTCCTTCGGGACAT
1 AGTGGTCCTTCGAGACAT
10590581 AGTGGTCCT
1 AGTGGTCCT
10590590 ACGGAACAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.16, C:0.22, G:0.33, T:0.29
Consensus pattern (18 bp):
AGTGGTCCTTCGAGACAT
Found at i:10595202 original size:18 final size:19
Alignment explanation
Indices: 10595181--10595219 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
10595171 AAATTAACTT
10595181 TTCGATCAAAGTCAAT-GG
1 TTCGATCAAAGTCAATAGG
10595199 TTCGATCAAAGTCAATAGG
1 TTCGATCAAAGTCAATAGG
10595218 TT
1 TT
10595220 AGACCGGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (19 bp):
TTCGATCAAAGTCAATAGG
Found at i:10596250 original size:16 final size:14
Alignment explanation
Indices: 10596239--10596269 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
10596229 GCAAATATTC
10596239 AAAAAATAAAATAT
1 AAAAAATAAAATAT
10596253 AAAAAATAAAATA-
1 AAAAAATAAAATAT
10596266 AAAA
1 AAAA
10596270 GGAAATTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (14 bp):
AAAAAATAAAATAT
Found at i:10596560 original size:35 final size:35
Alignment explanation
Indices: 10596512--10596597 Score: 136
Period size: 35 Copynumber: 2.5 Consensus size: 35
10596502 ATTTTGAATT
*
10596512 AGTCGTAACTTATTATGTTTCCTAATTATATTTTA
1 AGTCGAAACTTATTATGTTTCCTAATTATATTTTA
* *
10596547 AGTCGAAAATTATTATGTTTCCTAATTATCTTTTA
1 AGTCGAAACTTATTATGTTTCCTAATTATATTTTA
*
10596582 TGTCGAAACTTATTAT
1 AGTCGAAACTTATTAT
10596598 ATAATTATCT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.49
Consensus pattern (35 bp):
AGTCGAAACTTATTATGTTTCCTAATTATATTTTA
Found at i:10596941 original size:22 final size:24
Alignment explanation
Indices: 10596916--10596979 Score: 66
Period size: 22 Copynumber: 2.9 Consensus size: 24
10596906 AATACGTATA
*
10596916 TTCAATTTTTAGTA-ATTTAAT-T
1 TTCAATTTTTAATATATTTAATAT
*
10596938 TTC-ATTTTTAATATTTTTAATAT
1 TTCAATTTTTAATATATTTAATAT
*
10596961 TT-AATTTTTAA-ATTTTTAA
1 TTCAATTTTTAATATATTTAA
10596980 ATAATTTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
21 9 0.24
22 17 0.46
23 11 0.30
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (24 bp):
TTCAATTTTTAATATATTTAATAT
Found at i:10596979 original size:31 final size:30
Alignment explanation
Indices: 10596920--10596995 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 30
10596910 CGTATATTCA
* *
10596920 ATTTTTAGTAATTTAATTTTCATTTTT-AAT
1 ATTTTTAAT-ATTTAATTTTAATTTTTAAAT
10596950 ATTTTTAATATTTAATTTTTAAATTTTTAAAT
1 ATTTTTAATATTTAA-TTTT-AATTTTTAAAT
*
10596982 AATTTT-ATATTTAA
1 ATTTTTAATATTTAA
10596996 AAATTTAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
29 6 0.15
30 12 0.30
31 14 0.35
32 8 0.20
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.62
Consensus pattern (30 bp):
ATTTTTAATATTTAATTTTAATTTTTAAAT
Found at i:10596996 original size:24 final size:23
Alignment explanation
Indices: 10596933--10596996 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 23
10596923 TTTAGTAATT
10596933 TAATTTTCATTTTTAATATTTTTAA
1 TAATTTT-ATTTTTAA-ATTTTTAA
*
10596958 T-ATTTAATTTTTAAATTTTTAAA
1 TAATTTTATTTTTAAATTTTT-AA
*
10596981 TAATTTTATATTTAAA
1 TAATTTTATTTTTAAA
10596997 AATTTAAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
22 6 0.18
23 11 0.32
24 16 0.47
25 1 0.03
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (23 bp):
TAATTTTATTTTTAAATTTTTAA
Found at i:10597002 original size:24 final size:22
Alignment explanation
Indices: 10596965--10597031 Score: 64
Period size: 24 Copynumber: 2.9 Consensus size: 22
10596955 TAATATTTAA
**
10596965 TTTTTAAATTTTTAAATAATTT
1 TTTTTAAAAATTTAAATAATTT
10596987 TATATTTAAAAATTTAAAATAACTTT
1 T-T-TTTAAAAATTT-AAATAA-TTT
*
10597013 TTTTTTAAAA-TTAAATAAT
1 TTTTTAAAAATTTAAATAAT
10597032 CCCTTGAACT
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
21 1 0.03
22 7 0.18
23 3 0.08
24 16 0.42
25 7 0.18
26 4 0.11
ACGTcount: A:0.45, C:0.01, G:0.00, T:0.54
Consensus pattern (22 bp):
TTTTTAAAAATTTAAATAATTT
Found at i:10597318 original size:29 final size:29
Alignment explanation
Indices: 10597252--10597319 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
10597242 GAAAATATAT
* *
10597252 TTTCGCCCCTAAAATTTTATAATTTCAAG
1 TTTCACCCCTAAAATTTTATAAATTCAAG
**
10597281 TTTGTCCCCTAAAATTTTATAAAATTCAAG
1 TTTCACCCCTAAAATTTTAT-AAATTCAAG
10597311 -TTCACCCCT
1 TTTCACCCCT
10597320 CAACTTAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
29 25 0.76
30 8 0.24
ACGTcount: A:0.31, C:0.24, G:0.06, T:0.40
Consensus pattern (29 bp):
TTTCACCCCTAAAATTTTATAAATTCAAG
Found at i:10599814 original size:24 final size:24
Alignment explanation
Indices: 10599787--10599832 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
10599777 TTAATTGTCG
* *
10599787 CATTTAATCATTACTTAATTTATT
1 CATTGAATAATTACTTAATTTATT
*
10599811 CATTGATTAATTACTTAATTTA
1 CATTGAATAATTACTTAATTTA
10599833 ATCAATTGGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.35, C:0.11, G:0.02, T:0.52
Consensus pattern (24 bp):
CATTGAATAATTACTTAATTTATT
Found at i:10603505 original size:29 final size:27
Alignment explanation
Indices: 10603473--10603590 Score: 83
Period size: 29 Copynumber: 3.9 Consensus size: 27
10603463 ACTTTGATAA
10603473 AAAAAATTAATTCATATGATATAAGGCT
1 AAAAAATTAA-TCATATGATATAAGGCT
*
10603501 GAAAATTTTACGTTTAATCACTATGATATAAGGCT
1 -AAAA----A--ATTAATCA-TATGATATAAGGCT
*
10603536 AAAAAATTTGATCGATATGATATAAGGCT
1 AAAAAA-TTAATC-ATATGATATAAGGCT
* *
10603565 AAAAATTTTGATCGATATGATATAAG
1 AAAAA-ATTAATC-ATATGATATAAG
10603591 AATGAAAAGT
Statistics
Matches: 75, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
29 47 0.63
30 2 0.03
33 1 0.01
34 7 0.09
35 18 0.24
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (27 bp):
AAAAAATTAATCATATGATATAAGGCT
Found at i:10603598 original size:29 final size:29
Alignment explanation
Indices: 10603522--10603590 Score: 129
Period size: 29 Copynumber: 2.4 Consensus size: 29
10603512 GTTTAATCAC
10603522 TATGATATAAGGCTAAAAAATTTGATCGA
1 TATGATATAAGGCTAAAAAATTTGATCGA
*
10603551 TATGATATAAGGCTAAAAATTTTGATCGA
1 TATGATATAAGGCTAAAAAATTTGATCGA
10603580 TATGATATAAG
1 TATGATATAAG
10603591 AATGAAAAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.43, C:0.06, G:0.17, T:0.33
Consensus pattern (29 bp):
TATGATATAAGGCTAAAAAATTTGATCGA
Found at i:10604672 original size:199 final size:199
Alignment explanation
Indices: 10604332--10604728 Score: 776
Period size: 199 Copynumber: 2.0 Consensus size: 199
10604322 GTCTCTTACT
10604332 TTTGCTACCTATTTTATGGGTTAATCGCGCATAAATCCTTTCAGTTTCAGCGTGTTTCACGCTTT
1 TTTGCTACCTATTTTATGGGTTAATCGCGCATAAATCCTTTCAGTTTCAGCGTGTTTCACGCTTT
*
10604397 TATCACTATCAGGGGAAAATCACGTATCAAGTCCCCAGTCTTGGTATGTTATCTTTTTTGGTCAC
66 TATCACTATCAGGGGAAAATCACGCATCAAGTCCCCAGTCTTGGTATGTTATCTTTTTTGGTCAC
10604462 TGACCTATGCATTTTTATTATTTTAAATTAACTGCTAACTTTTATTTTATCGCACATTAATCACT
131 TGACCTATGCATTTTTATTATTTTAAATTAACTGCTAACTTTTATTTTATCGCACATTAATCACT
10604527 GACA
196 GACA
10604531 TTTGCTACCTATTTTATGGGTTAATCGCGCATAAATCCTTTCAGTTTCAGCGTGTTTCACGCTTT
1 TTTGCTACCTATTTTATGGGTTAATCGCGCATAAATCCTTTCAGTTTCAGCGTGTTTCACGCTTT
*
10604596 TATCACTATCAGGGGAAAATCACGCATCAAGTCCTCAGTCTTGGTATGTTATCTTTTTTGGTCAC
66 TATCACTATCAGGGGAAAATCACGCATCAAGTCCCCAGTCTTGGTATGTTATCTTTTTTGGTCAC
10604661 TGACCTATGCATTTTTATTATTTTAAATTAACTGCTAACTTTTATTTTATCGCACATTAATCACT
131 TGACCTATGCATTTTTATTATTTTAAATTAACTGCTAACTTTTATTTTATCGCACATTAATCACT
10604726 GAC
196 GAC
10604729 TTTTATTTTA
Statistics
Matches: 196, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
199 196 1.00
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.41
Consensus pattern (199 bp):
TTTGCTACCTATTTTATGGGTTAATCGCGCATAAATCCTTTCAGTTTCAGCGTGTTTCACGCTTT
TATCACTATCAGGGGAAAATCACGCATCAAGTCCCCAGTCTTGGTATGTTATCTTTTTTGGTCAC
TGACCTATGCATTTTTATTATTTTAAATTAACTGCTAACTTTTATTTTATCGCACATTAATCACT
GACA
Found at i:10605921 original size:18 final size:18
Alignment explanation
Indices: 10605898--10605942 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
10605888 TATTATCTTG
10605898 TTTTTAATCCTT-TATTAT
1 TTTTTAAT-CTTATATTAT
*
10605916 TTTTT-ATCTTATTTTAT
1 TTTTTAATCTTATATTAT
10605933 TTTTT-ATCTT
1 TTTTTAATCTT
10605943 GTTCTATCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 3 0.12
17 17 0.68
18 5 0.20
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTTTAATCTTATATTAT
Found at i:10609315 original size:26 final size:27
Alignment explanation
Indices: 10609257--10609325 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
10609247 AATATCACAT
10609257 GAATTACAGATTCTTTTAGTTCATCAA
1 GAATTACAGATTCTTTTAGTTCATCAA
10609284 GAATTACAGATTCTTTTAGTT-ATCAA
1 GAATTACAGATTCTTTTAGTTCATCAA
*
10609310 GAATTATAGATT-TTTT
1 GAATTACAGATTCTTTT
10609326 GACATATGCA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
25 4 0.10
26 16 0.39
27 21 0.51
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (27 bp):
GAATTACAGATTCTTTTAGTTCATCAA
Found at i:10613503 original size:3 final size:3
Alignment explanation
Indices: 10613482--10613565 Score: 52
Period size: 3 Copynumber: 29.0 Consensus size: 3
10613472 ATGGCCCGTT
* * * * *
10613482 TTA TTT TTA TTA -TA GTTA TTA TAA TTG TTA -TA ATA TTA TTA TAA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
10613526 TTA TTA -TA TT- TT- TTA TTA TTA TTAA TAA ATA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA
10613566 CATATTACAG
Statistics
Matches: 62, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
2 10 0.16
3 48 0.77
4 4 0.06
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:10613524 original size:29 final size:27
Alignment explanation
Indices: 10613488--10613560 Score: 83
Period size: 29 Copynumber: 2.6 Consensus size: 27
10613478 CGTTTTATTT
*
10613488 TTATTATAGTTATTATAATTGTTATAATA
1 TTATTATAATTATTAT-ATT-TTATAATA
* *
10613517 TTATTATAATTATTATATTTTTTATTA
1 TTATTATAATTATTATATTTTATAATA
*
10613544 TTATTAATAAATATTAT
1 TTATT-ATAATTATTAT
10613561 TATTACATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
27 11 0.28
28 13 0.33
29 15 0.38
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (27 bp):
TTATTATAATTATTATATTTTATAATA
Found at i:10614956 original size:2 final size:2
Alignment explanation
Indices: 10614949--10614974 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10614939 CATATTAGTC
10614949 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
10614975 TTAAATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10614988 original size:18 final size:18
Alignment explanation
Indices: 10614967--10615006 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
10614957 ATATATATAT
10614967 ATATATATTTAAATTTTA
1 ATATATATTTAAATTTTA
* **
10614985 ATATTTATTTATTTTTTA
1 ATATATATTTAAATTTTA
10615003 ATAT
1 ATAT
10615007 TAAGGAATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
ATATATATTTAAATTTTA
Found at i:10615641 original size:18 final size:19
Alignment explanation
Indices: 10615600--10615641 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
10615590 ATTCTTTCTT
* *
10615600 TTTAATATTTTTATATATA
1 TTTATTATTTTCATATATA
*
10615619 CTTATTATTTTCATA-ATA
1 TTTATTATTTTCATATATA
10615637 TTTAT
1 TTTAT
10615642 ATATATTATT
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTATTATTTTCATATATA
Found at i:10617240 original size:14 final size:14
Alignment explanation
Indices: 10617203--10617243 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
10617193 CATTCTTATT
* *
10617203 TTTGCATCGTTGTA
1 TTTGCATCTTTGCA
10617217 TTTGCA--TTTGCA
1 TTTGCATCTTTGCA
10617229 TTTGCATCTTTGCA
1 TTTGCATCTTTGCA
10617243 T
1 T
10617244 AGTTACATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 10 0.43
14 13 0.57
ACGTcount: A:0.15, C:0.17, G:0.17, T:0.51
Consensus pattern (14 bp):
TTTGCATCTTTGCA
Found at i:10619165 original size:94 final size:95
Alignment explanation
Indices: 10619051--10619296 Score: 433
Period size: 94 Copynumber: 2.6 Consensus size: 95
10619041 AAGTAAATTA
*
10619051 TCACAGTGTTAAAGAATACACAATTTAGCAGAATTGGCAGCAACCGAATAAATTTACTTTCAACC
1 TCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAATAAATTTACTTTCAACC
*
10619116 AAAAGACAAAAC-AAAGATAAATACTAACT
66 AAAAGACAAAACAAAAGACAAATACTAACT
*
10619145 TCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAATAAATTAAC-TTCAACC
1 TCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAATAAATTTACTTTCAACC
10619209 AAAAGACAAAACAAAAGACAAATACTAACT
66 AAAAGACAAAACAAAAGACAAATACTAACT
* *
10619239 TCACAGTGTTAAAGAATAAACAGTTTAGCAGTATTGGCAGCAACCGAATAAATTTACT
1 TCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAATAAATTTACT
10619297 GAGCAATCTA
Statistics
Matches: 144, Mismatches: 6, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
93 19 0.13
94 125 0.87
ACGTcount: A:0.46, C:0.18, G:0.13, T:0.22
Consensus pattern (95 bp):
TCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAATAAATTTACTTTCAACC
AAAAGACAAAACAAAAGACAAATACTAACT
Found at i:10621511 original size:20 final size:20
Alignment explanation
Indices: 10621488--10621543 Score: 87
Period size: 20 Copynumber: 2.8 Consensus size: 20
10621478 TGAAATGAAA
10621488 ATCGCAACGAGAGAATGACT
1 ATCGCAACGAGAGAATGACT
*
10621508 ATCGCAACGCG-GAAATGACT
1 ATCGCAACGAGAG-AATGACT
10621528 ATCGCAACGAGAGAAT
1 ATCGCAACGAGAGAAT
10621544 CGCAATGCGA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.39, C:0.21, G:0.25, T:0.14
Consensus pattern (20 bp):
ATCGCAACGAGAGAATGACT
Found at i:10621547 original size:14 final size:14
Alignment explanation
Indices: 10621528--10621583 Score: 58
Period size: 14 Copynumber: 3.6 Consensus size: 14
10621518 GGAAATGACT
10621528 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
*
10621542 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAGA
10621561 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
10621575 ATCGCAACG
1 ATCGCAACG
10621584 CGAAATGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 19 0.54
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.43, C:0.21, G:0.25, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAGA
Found at i:10621558 original size:33 final size:33
Alignment explanation
Indices: 10621479--10621602 Score: 158
Period size: 33 Copynumber: 3.5 Consensus size: 33
10621469 TCTTTTGGTT
10621479 GAAATGAAAATCGCAACGAGAGAATGACTATCGCAACGC
1 GAAATGAAAATCGCAAC--GAG-A-GA--ATCGCAACGC
** *
10621518 GGAAATGACTATCGCAACGAGAGAATCGCAATGC
1 -GAAATGAAAATCGCAACGAGAGAATCGCAACGC
10621552 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
10621585 GAAATGAAAATCGCAACG
1 GAAATGAAAATCGCAACG
10621603 CGAAATGAAA
Statistics
Matches: 78, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
33 48 0.62
34 9 0.12
36 2 0.03
37 1 0.01
38 3 0.04
40 15 0.19
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.12
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:10621565 original size:19 final size:19
Alignment explanation
Indices: 10621479--10621624 Score: 123
Period size: 19 Copynumber: 8.1 Consensus size: 19
10621469 TCTTTTGGTT
*
10621479 GAAATGAAAATCGCAACGA
1 GAAATGAAAATCGCAACGC
**
10621498 GAGAATGACTATCGCAACGC
1 GA-AATGAAAATCGCAACGC
**
10621518 GGAAATGACTATCGCAA--C
1 -GAAATGAAAATCGCAACGC
* *
10621536 G--A-GAGAATCGCAATGC
1 GAAATGAAAATCGCAACGC
10621552 GAAATGAAAATCGCAA--C
1 GAAATGAAAATCGCAACGC
*
10621569 G--A-GAGAATCGCAACGC
1 GAAATGAAAATCGCAACGC
10621585 GAAATGAAAATCGCAACGC
1 GAAATGAAAATCGCAACGC
*
10621604 GAAATGAAAATCGCAATGC
1 GAAATGAAAATCGCAACGC
10621623 GA
1 GA
10621625 TTTTGTTTTC
Statistics
Matches: 106, Mismatches: 9, Indels: 24
0.76 0.06 0.17
Matches are distributed among these distances:
14 19 0.18
15 2 0.02
16 4 0.04
17 3 0.03
18 3 0.03
19 45 0.42
20 28 0.26
21 2 0.02
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.12
Consensus pattern (19 bp):
GAAATGAAAATCGCAACGC
Found at i:10621716 original size:20 final size:20
Alignment explanation
Indices: 10621652--10621741 Score: 112
Period size: 20 Copynumber: 4.5 Consensus size: 20
10621642 GATTATCTCA
*
10621652 TTGCGATTTTCA-TTTCGCG
1 TTGCGATTTTCATTTTCGTG
10621671 TTGCGATTTTCATTTCTC-TCG
1 TTGCGATTTTCATTT-TCGT-G
**
10621692 TTGCGATAGTCATTTTCGTG
1 TTGCGATTTTCATTTTCGTG
*
10621712 TTGCGATTTTCATTTTCATG
1 TTGCGATTTTCATTTTCGTG
10621732 TTGCGATTTT
1 TTGCGATTTT
10621742 AAGTTTAGAA
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
19 12 0.20
20 32 0.52
21 17 0.28
ACGTcount: A:0.12, C:0.18, G:0.19, T:0.51
Consensus pattern (20 bp):
TTGCGATTTTCATTTTCGTG
Found at i:10622302 original size:40 final size:40
Alignment explanation
Indices: 10622236--10622467 Score: 234
Period size: 40 Copynumber: 5.8 Consensus size: 40
10622226 TTAAAAATCG
* * *
10622236 CGTTGCGATTTACGGATATGCATTGCGATTTACGTATTCT
1 CGTTGCGATTTACAGATACGCGTTGCGATTTACGTATTCT
10622276 CGTTGCGATTTACAGATACGCGTTGCGATTTACGTATTCT
1 CGTTGCGATTTACAGATACGCGTTGCGATTTACGTATTCT
* * * *
10622316 CGTTGCGATTTACGGATACACGTTACGATTTTACGTATTGT
1 CGTTGCGATTTACAGATACGCGTTGCGA-TTTACGTATTCT
* * *
10622357 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGGATACT
1 CGTTGCGATTTACAGATACGCGTTGCGA-TTTACGTATTCT
* * ** * *
10622398 CGTTGCGATAGT-CAGA-ATCGCGTTGTGATTTATATGTTCG
1 CGTTGCGAT-TTACAGATA-CGCGTTGCGATTTACGTATTCT
* * * *
10622438 CGTTGCGATTTTCATATTCGTGTTGCGATT
1 CGTTGCGATTTACAGATACGCGTTGCGATT
10622468 CTGGAAAATC
Statistics
Matches: 161, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 91 0.57
41 68 0.42
42 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.24, T:0.39
Consensus pattern (40 bp):
CGTTGCGATTTACAGATACGCGTTGCGATTTACGTATTCT
Done.