genome.fa.s8.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000008.1 Hibiscus syriacus cultivar Beakdansim tig00000014_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92861

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3493--3527	18	1.9	18	88	0	52	31	8	5	54	1.54
3828--3865	20	1.9	20	94	0	67	34	31	15	18	1.92
3828--4030	65	3.1	63	79	12	198	32	24	17	25	1.97
4034--4073	19	2.1	19	100	0	80	22	32	20	25	1.98
10990--11014	2	12.5	2	100	0	50	52	0	0	48	1.00
11475--11500	5	5.2	5	100	0	52	19	0	0	80	0.71
12968--13059	31	3.0	31	91	0	148	34	9	27	28	1.88
17709--17898	42	4.5	42	75	7	186	33	16	24	25	1.96
21448--21626	82	2.2	81	80	1	205	31	15	19	33	1.93
26702--26764	23	2.8	22	78	7	72	31	25	22	20	1.98
27145--27185	14	2.9	14	96	0	73	39	21	7	31	1.81
29379--29432	21	2.6	21	90	0	81	31	24	20	24	1.98
29970--30018	13	3.6	14	83	8	57	73	0	20	6	1.04
31484--31568	44	1.9	44	88	7	127	37	21	15	25	1.92
32182--32254	18	3.9	18	85	7	110	19	21	31	27	1.97
32179--32255	38	2.0	38	94	0	136	20	22	29	27	1.98
34587--34657	35	2.0	35	97	0	133	39	14	16	29	1.88
35205--35545	171	2.0	171	94	0	592	46	10	5	37	1.61
37437--37470	2	17.0	2	100	0	68	50	0	50	0	1.00
40136--40179	20	2.2	20	100	0	88	27	0	13	59	1.35
48713--48804	30	3.1	30	85	4	123	36	40	4	18	1.71
52549--52578	3	10.0	3	92	0	51	33	36	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52574--52599	12	2.2	12	100	0	52	7	34	23	34	1.83
52571--52603	15	2.2	15	94	0	57	12	33	21	33	1.90
54600--54671	29	2.3	29	83	9	72	62	4	1	31	1.23
57975--58018	14	3.1	14	93	3	70	29	6	25	38	1.81
63273--63311	17	2.4	17	91	4	62	43	2	5	48	1.38
65644--65696	16	3.2	16	73	5	61	33	16	3	45	1.66
65718--65753	14	2.4	16	82	17	51	58	5	0	36	1.22
66907--66977	31	2.3	31	82	0	79	33	15	19	30	1.93
67687--67748	31	2.0	31	87	0	88	38	16	11	33	1.84
68421--68466	23	1.9	25	82	8	60	43	2	4	50	1.34
68827--68863	8	5.0	8	87	12	53	64	0	0	35	0.94
68809--68865	21	2.8	20	80	17	64	68	0	0	31	0.90
68836--68887	17	3.1	16	77	20	61	71	1	0	26	0.97
70368--70442	3	25.0	3	86	5	107	61	0	1	37	1.05
70630--70701	20	3.3	20	66	23	56	34	18	25	22	1.96
70571--70962	45	8.7	45	95	0	676	33	18	23	23	1.97
71617--71673	22	2.6	22	94	0	96	36	14	14	35	1.86
72039--72176	54	2.6	54	81	4	154	25	21	15	37	1.93
72589--74009	711	2.0	712	93	0	2441	31	18	15	33	1.93
79820--79867	6	7.7	6	81	6	51	56	12	12	18	1.67
79833--79868	12	3.0	12	95	0	63	58	13	8	19	1.61
83026--83080	23	2.4	22	82	17	67	67	5	0	27	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83053--83114	28	2.2	28	83	11	74	69	4	1	24	1.17
84590--84690	3	32.0	3	86	7	114	64	0	0	34	1.00
84590--84690	25	3.9	25	86	5	130	64	0	0	34	1.00
84590--84690	22	4.4	22	85	8	123	64	0	0	34	1.00
86413--86469	3	18.0	3	86	13	71	31	0	0	68	0.90
87895--88111	116	1.8	118	81	6	271	39	7	8	44	1.65

Tables:   1

The End!