genome.fa.s80.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000080.1 Hibiscus syriacus cultivar Beakdansim tig00000144_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60479

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285--317	2	16.5	2	100	0	66	48	0	0	51	1.00
701--767	14	4.8	14	86	0	98	11	13	17	56	1.66
704--767	28	2.3	28	94	0	110	12	12	17	57	1.64
910--1005	47	2.0	47	95	0	174	11	13	17	57	1.65
910--1045	23	5.8	24	78	10	136	12	14	16	56	1.67
1189--1268	32	2.6	32	90	7	121	38	7	33	20	1.80
9654--9696	5	8.6	5	92	0	59	4	41	2	51	1.35
14719--14764	24	1.9	24	86	0	65	28	10	28	32	1.91
17868--17905	20	1.9	20	94	0	67	28	36	23	10	1.88
17907--17958	23	2.3	23	89	0	77	25	26	38	9	1.86
18012--18086	33	2.3	33	88	0	105	9	38	26	25	1.86
18083--18139	10	5.7	10	80	15	73	10	26	36	26	1.89
18024--18105	33	2.5	33	85	0	110	9	36	28	25	1.88
18083--18140	20	2.9	20	97	0	107	10	27	36	25	1.89
18152--18209	29	2.0	29	89	0	89	24	24	36	15	1.94
19395--19431	3	12.3	3	100	0	74	64	0	0	35	0.94
21316--21394	38	2.1	38	100	0	158	58	18	0	22	1.40
21931--21975	22	2.1	21	92	8	74	51	8	0	40	1.33
22059--22325	36	7.8	35	73	11	203	44	18	10	25	1.82
22117--22307	32	5.8	32	72	10	123	43	18	10	26	1.83
22078--22325	68	3.7	68	83	0	336	44	18	11	25	1.83
22447--22560	51	2.2	50	85	3	147	27	9	8	54	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28434--28514	24	3.5	24	70	20	75	22	24	23	29	1.99
28435--28537	44	2.3	44	82	9	138	22	26	22	29	1.99
30046--30089	21	2.1	21	82	0	52	9	43	15	31	1.79
32155--32418	53	5.0	53	89	1	395	26	15	18	39	1.91
32155--32418	107	2.5	105	91	3	413	26	15	18	39	1.91
32919--32970	20	2.5	21	84	3	70	38	19	23	19	1.93
32959--33053	20	4.7	20	80	7	102	32	26	18	22	1.97
33774--33827	24	2.2	24	90	0	81	24	14	18	42	1.88
34002--34026	12	2.1	12	100	0	50	72	0	28	0	0.86
36318--36382	19	3.7	19	70	19	68	43	20	24	12	1.86
36318--36380	33	1.9	33	96	0	117	41	20	25	12	1.88
36393--36449	14	3.7	14	70	20	51	8	21	22	47	1.78
36378--36467	33	2.7	33	87	0	135	13	20	21	45	1.84
36407--36467	19	3.5	19	68	21	51	11	19	21	47	1.81
36574--36610	14	2.6	14	91	0	65	45	24	0	29	1.53
38304--38488	91	2.0	90	89	6	282	47	17	12	22	1.82
40173--40251	20	4.1	19	83	6	86	41	20	24	13	1.88
40182--40249	20	3.5	19	88	6	91	38	23	23	14	1.92
40173--40285	19	6.1	19	76	13	92	41	21	23	13	1.88
40281--40325	19	2.4	19	92	0	72	8	15	26	48	1.74
40877--40929	20	2.7	20	93	0	88	26	20	28	24	1.99
40938--40991	20	2.7	20	97	0	99	25	18	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40878--40994	61	1.9	61	85	0	162	23	17	24	33	1.97
40878--41012	61	2.2	61	81	2	155	22	20	24	32	1.98
41062--41102	21	2.0	21	85	0	55	34	29	17	19	1.94
41837--41883	18	2.6	18	96	0	85	42	10	23	23	1.85
53677--53786	35	3.1	35	93	0	184	43	24	0	31	1.55
53782--53858	35	2.2	35	80	0	91	38	0	19	41	1.52
55293--55378	23	3.7	23	71	20	79	29	24	25	20	1.99
58306--58349	22	2.0	21	95	4	79	29	22	20	27	1.99

Tables:   1

The End!