genome.fa.s800.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000800.1 Hibiscus syriacus cultivar Beakdansim tig00001555_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52359

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4276--4332	20	2.8	20	94	0	96	31	15	14	38	1.87
5917--5957	3	14.3	3	90	10	68	34	0	0	65	0.93
7321--7393	18	3.7	19	70	24	62	43	0	1	54	1.08
7324--7380	19	3.0	19	73	14	55	45	0	1	52	1.11
7336--7390	23	2.5	21	80	13	58	43	0	1	54	1.10
7368--7768	146	2.7	149	81	7	426	39	4	7	47	1.53
7515--7799	150	1.9	148	82	5	331	40	3	7	48	1.49
10680--10745	20	3.4	19	79	10	71	21	9	6	63	1.45
11734--11769	19	1.9	18	88	5	54	50	0	16	33	1.46
12864--13003	72	1.9	72	86	0	199	27	19	18	34	1.95
15880--15954	20	3.7	20	94	3	123	36	13	14	36	1.85
16576--16939	76	4.8	76	90	0	557	25	19	20	34	1.96
16882--16984	45	2.3	45	86	0	134	29	20	19	31	1.97
16729--17136	198	2.1	197	91	0	654	26	20	20	32	1.97
16805--17070	122	2.2	122	89	4	394	27	20	20	31	1.97
16654--17592	274	3.4	274	94	0	1569	26	20	20	32	1.97
16927--17213	76	3.8	76	91	1	432	26	20	20	32	1.97
17007--17420	198	2.1	197	90	1	648	26	21	20	31	1.97
17156--17268	45	2.5	45	85	2	145	28	21	20	30	1.98
16569--17487	350	2.6	350	86	2	1224	26	20	20	33	1.97
17079--17344	122	2.2	122	89	2	408	27	20	20	31	1.97
17205--17487	76	3.7	76	95	0	485	27	20	18	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17079--17592	198	2.6	195	83	4	570	26	20	20	32	1.97
17434--17542	45	2.4	45	87	3	155	25	22	22	30	1.99
17779--17813	3	12.3	3	88	11	56	37	0	0	62	0.95
19168--19212	20	2.2	20	84	15	56	44	4	2	48	1.35
19169--19224	22	2.5	21	78	18	60	42	3	1	51	1.29
19279--19330	22	2.4	21	73	17	52	50	1	1	46	1.23
19213--19621	147	2.7	148	79	11	415	39	5	6	48	1.53
19618--19653	18	2.1	18	89	5	56	58	0	0	41	0.98
20568--20615	20	2.4	20	96	0	87	8	22	25	43	1.81
20607--20678	22	3.4	21	73	11	76	19	19	23	37	1.94
20628--20692	19	3.3	19	71	12	67	20	20	18	41	1.91
20607--20692	41	2.1	41	97	0	163	19	19	20	39	1.93
20771--20857	6	14.5	6	100	0	174	33	50	16	0	1.45
20858--20904	5	9.6	5	95	4	87	38	21	40	0	1.53
21377--21437	6	10.2	6	100	0	122	0	16	49	34	1.46
21521--21585	19	3.3	19	69	12	58	41	21	18	18	1.90
21514--21606	41	2.3	41	92	1	152	38	23	18	19	1.93
21626--21780	20	7.6	20	74	9	152	37	24	23	14	1.93
21607--21805	41	4.9	41	95	2	330	35	25	21	17	1.95
21713--21976	142	1.9	141	89	4	415	35	21	23	20	1.96
21855--21922	20	3.3	20	73	4	73	44	23	22	10	1.83
21845--21947	41	2.5	41	88	0	143	39	22	19	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21959--22003	19	2.3	20	80	7	56	28	17	31	22	1.97
24191--24224	14	2.4	14	100	0	68	14	0	61	23	1.33
24792--24833	20	2.2	19	87	8	59	21	23	11	42	1.86
24946--25051	45	2.3	45	84	7	126	32	16	12	38	1.86
24879--25118	110	2.2	112	83	1	304	31	15	12	40	1.84
25101--25146	21	2.1	22	88	4	67	30	13	10	45	1.77
25307--25412	46	2.3	45	85	7	135	32	16	13	38	1.87
25307--25412	45	2.3	45	85	7	135	32	16	13	38	1.87
25351--25497	65	2.2	64	84	5	197	29	14	13	42	1.84
24793--25517	361	2.0	361	97	0	1369	29	17	12	40	1.87
25240--25548	110	2.8	112	82	6	331	30	15	12	40	1.85
25462--25548	21	3.8	21	68	19	66	28	18	11	41	1.85
25582--26080	134	3.7	134	84	4	583	26	31	17	24	1.97
25590--26088	273	1.8	269	82	4	644	25	31	17	25	1.97
26282--26320	3	12.7	3	94	5	69	30	0	0	69	0.89
31946--32028	21	3.7	23	72	16	77	49	1	1	48	1.16
31936--32023	46	2.0	42	82	8	104	51	1	1	46	1.15
32298--32342	22	2.0	22	95	0	81	40	4	15	40	1.67
42737--42769	16	2.1	16	100	0	66	36	15	6	42	1.71
43833--43903	29	2.5	30	84	9	78	40	0	2	56	1.14
43848--43906	12	4.9	12	85	0	55	38	0	3	57	1.15
43860--43906	17	2.6	17	83	6	58	38	0	2	59	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45302--45835	249	2.2	244	85	8	726	26	12	20	40	1.88

Tables:   1

The End!